From a7ac11822eb789b990dc38bca9587259428f4954 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Tue, 1 Jun 2021 10:39:26 +0200 Subject: [PATCH 1/3] fix: default value for email is null --- nextflow.config | 2 +- nextflow_schema.json | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index 0947c5f67..1350a9be6 100644 --- a/nextflow.config +++ b/nextflow.config @@ -88,7 +88,7 @@ params { sequencing_center = null // No sequencing center to be written in BAM header in MapReads process multiqc_config = false monochrome_logs = false // Monochrome logs disabled - email = false // No default email + email = null // No default email email_on_fail = false plaintext_email = false // Plaintext email disabled max_multiqc_email_size = 25.MB diff --git a/nextflow_schema.json b/nextflow_schema.json index 4e4acc1cc..8fff90c3b 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -625,6 +625,7 @@ }, "email": { "type": "string", + "default": null, "description": "Email address for completion summary.", "fa_icon": "fas fa-envelope", "help_text": "Set this parameter to your e-mail address to get a summary e-mail with details of the run sent to you when the workflow exits. If set in your user config file (`~/.nextflow/config`) then you don't need to specify this on the command line for every run.", From 789ea5f2f2057f6f2a15abc1836a2d2efbf2954b Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Tue, 1 Jun 2021 10:40:55 +0200 Subject: [PATCH 2/3] feat: update CHANGELOG --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 3b80cfcdf..fb632b091 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,7 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Fixed -- [#375](https://github.com/nf-core/sarek/pull/375), [#381](https://github.com/nf-core/sarek/pull/381), [#382](https://github.com/nf-core/sarek/pull/382) - Fix bugs due to `TEMPLATE` sync from [#373](https://github.com/nf-core/sarek/pull/373) +- [#375](https://github.com/nf-core/sarek/pull/375), [#381](https://github.com/nf-core/sarek/pull/381), [#382](https://github.com/nf-core/sarek/pull/382), [#385](https://github.com/nf-core/sarek/pull/385) - Fix bugs due to `TEMPLATE` sync from [#373](https://github.com/nf-core/sarek/pull/373) - [#378](https://github.com/nf-core/sarek/pull/378) - Fix `Spark` related issue due to `Docker` settings in `nextflow.config` ### Deprecated From 7763fe42dc0ac19dd2da9d9b6cde12f079e706a7 Mon Sep 17 00:00:00 2001 From: MaxUlysse Date: Tue, 1 Jun 2021 10:46:21 +0200 Subject: [PATCH 3/3] fix: null -> empty --- nextflow.config | 2 +- nextflow_schema.json | 1 - 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/nextflow.config b/nextflow.config index 1350a9be6..af70bfbb9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -88,7 +88,7 @@ params { sequencing_center = null // No sequencing center to be written in BAM header in MapReads process multiqc_config = false monochrome_logs = false // Monochrome logs disabled - email = null // No default email + email = "" // No default email email_on_fail = false plaintext_email = false // Plaintext email disabled max_multiqc_email_size = 25.MB diff --git a/nextflow_schema.json b/nextflow_schema.json index 8fff90c3b..4e4acc1cc 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -625,7 +625,6 @@ }, "email": { "type": "string", - "default": null, "description": "Email address for completion summary.", "fa_icon": "fas fa-envelope", "help_text": "Set this parameter to your e-mail address to get a summary e-mail with details of the run sent to you when the workflow exits. If set in your user config file (`~/.nextflow/config`) then you don't need to specify this on the command line for every run.",