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ultimate preprocessing refactoring for 3.0 #515

Merged
merged 18 commits into from
Apr 13, 2022
Merged

ultimate preprocessing refactoring for 3.0 #515

merged 18 commits into from
Apr 13, 2022

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maxulysse
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
    • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
    • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
    • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint .).
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

maxulysse
maxulysse commented Mar 25, 2022
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conf/igenomes.config Outdated Show resolved Hide resolved
@maxulysse maxulysse marked this pull request as ready for review April 13, 2022 14:34
@FriederikeHanssen FriederikeHanssen merged commit d6dcbb9 into nf-core:dev Apr 13, 2022
@maxulysse maxulysse deleted the dev_ultimate_preprocessing branch April 29, 2022 12:30
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@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

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@maxulysse @FriederikeHanssen