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don't annotate gvcfs #793

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Oct 12, 2022
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don't annotate gvcfs #793

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -31,6 +31,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#771](https://github.com/nf-core/sarek/pull/771) - update to new modules syntax
- [#777](https://github.com/nf-core/sarek/pull/777) - Fix mixed up aws full size tests output paths
- [#789](https://github.com/nf-core/sarek/issues/789) - Fix somatic mutect2 test
- [#793](https://github.com/nf-core/sarek/pull/793) - Remove DeepVariant GVCF from annotation

### Deprecated

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2 changes: 1 addition & 1 deletion subworkflows/local/germline_variant_calling.nf
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Expand Up @@ -125,7 +125,7 @@ workflow GERMLINE_VARIANT_CALLING {
fasta_fai
)

deepvariant_vcf = Channel.empty().mix(RUN_DEEPVARIANT.out.deepvariant_vcf,RUN_DEEPVARIANT.out.deepvariant_gvcf)
deepvariant_vcf = Channel.empty().mix(RUN_DEEPVARIANT.out.deepvariant_vcf)
ch_versions = ch_versions.mix(RUN_DEEPVARIANT.out.versions)
}

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