From e843703b0213541c52880e396d07e1fec1b2a1ef Mon Sep 17 00:00:00 2001
From: nschcolnicov <nico.schcolnicov@gmail.com>
Date: Mon, 26 Aug 2024 15:45:44 +0000
Subject: [PATCH] Updated snaps

---
 tests/test.nf.test.snap                   | 64 +++++++++++------------
 tests/test_index.nf.test.snap             | 64 +++++++++++------------
 tests/test_no_genome.nf.test.snap         | 64 +++++++++++------------
 tests/test_technical_repeats.nf.test.snap | 44 ++++++++--------
 tests/test_umi.nf.test.snap               | 54 +++++++++----------
 5 files changed, 145 insertions(+), 145 deletions(-)

diff --git a/tests/test.nf.test.snap b/tests/test.nf.test.snap
index 43c24334..39ccd69f 100644
--- a/tests/test.nf.test.snap
+++ b/tests/test.nf.test.snap
@@ -34,19 +34,19 @@
     },
     "mirtrace": {
         "content": [
-            "mirtrace-stats-contamination_basic.tsv:md5,baeeda551a91def51b0d945b4c1ea8a2",
-            "mirtrace-stats-length.tsv:md5,c09651fb8f8417aafad3f3173ae855df",
-            "mirtrace-stats-contamination_detailed.tsv:md5,3256b063ab94df31154104416abdeafe",
-            "mirtrace-stats-rnatype.tsv:md5,fdba5f1ccad362dfa2a2e219aa5b16e7",
-            "mirtrace-stats-phred.tsv:md5,4b8fa6f5aaeb4f2e43fcb1afa40ebcfa",
-            "mirtrace-stats-qcstatus.tsv:md5,00a31eee51e4b2306e83fcdc65790da3",
-            "mirtrace-stats-mirna-complexity.tsv:md5,6f7c2ced9fae8315b2ebb91dd6db9638"
+            "mirtrace-stats-contamination_basic.tsv:md5,a67910702b13918a7d53f1283119f899",
+            "mirtrace-stats-length.tsv:md5,0609fcb0014f0d2af3308655b2418635",
+            "mirtrace-stats-contamination_detailed.tsv:md5,feb096d380e1ae62b4e73d54ed79e891",
+            "mirtrace-stats-rnatype.tsv:md5,8a333ff54c189c4a5a175a619139a9ac",
+            "mirtrace-stats-phred.tsv:md5,3f645df09c8eb314577cf6c4afda10f4",
+            "mirtrace-stats-qcstatus.tsv:md5,5fdd73860d2df454e21593df68975459",
+            "mirtrace-stats-mirna-complexity.tsv:md5,fce67408e9a9ab4a1a6f97e7e23ea2c8"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:51:53.974696252"
+        "timestamp": "2024-08-26T14:47:45.013663624"
     },
     "mirna_quant_reference": {
         "content": [
@@ -209,7 +209,7 @@
             "fastqc_overrepresented_sequences_plot.txt:md5,d861a4a956a3023efa19b1259d8665b2",
             true,
             "fastqc_sequence_counts_plot-1.txt:md5,37d8ae6c5734eb2679e65e46c9af9101",
-            "mirtrace_complexity_plot.txt:md5,5f78d6f559a9642e68e1fd74ac2c11ca",
+            "mirtrace_complexity_plot.txt:md5,bb92ed0659dddb15d3e01686acef85b5",
             "fastqc_per_sequence_gc_content_plot-1_Percentages.txt:md5,edf5130b48b0814788867dd42e9cf407",
             "multiqc_citations.txt:md5,3adbccd17a42d0d5d97ee7ebb476f433",
             true,
@@ -222,14 +222,14 @@
             "fastqc_per_base_n_content_plot.txt:md5,fb8a49467d1679dbf716e1f00c1f25e5",
             "fastp-seq-quality-plot_Read_1_After_filtering.txt:md5,b1481a9fbf5ea541b39aed99b51d616f",
             "fastqc_per_sequence_quality_scores_plot.txt:md5,38dbd6509de7f1beac17e44acb8336be",
-            "mirtrace_qc_plot.txt:md5,c436d017382baed6617fc3c1ad8ab41d",
+            "mirtrace_qc_plot.txt:md5,9036243402f6248214dc0458cb1291e9",
             "fastqc_per_sequence_quality_scores_plot-1.txt:md5,69f4459318311103fe71a5d1d3b2c076",
-            "mirtrace_length_plot.txt:md5,2366f10eb8bd3c32d2b35e2df20c786c",
+            "mirtrace_length_plot.txt:md5,86a0d54324cbe4817b112b02d4872cbb",
             true,
             "fastqc_overrepresented_sequences_plot-1.txt:md5,1de000de50cc7516bb9d996def14c6eb",
             "fastqc-status-check-heatmap-1.txt:md5,e64c353797e6dc057d10b3194ca6b20d",
             "fastqc_sequence_counts_plot.txt:md5,384516be5885fdeac59e70c17f1413c2",
-            "mirtrace_rna_categories_plot.txt:md5,8665376e2a123e1661f82cbbee54789f",
+            "mirtrace_rna_categories_plot.txt:md5,9a57e6b3a3dd75906134030d25f6a7a9",
             "fastp-seq-quality-plot_Read_1_Before_filtering.txt:md5,65685440fcb927115ac30b01133e2f92",
             true,
             "fastqc_per_base_sequence_quality_plot.txt:md5,80ea53d94917cadcb41f3fdb56cba014",
@@ -251,7 +251,7 @@
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:52:27.886436979"
+        "timestamp": "2024-08-26T14:48:43.985133435"
     },
     "mirna_quant_seqcluster": {
         "content": [
@@ -272,20 +272,20 @@
     },
     "mirtrace_qc_passed_reads.rnatype_unknown.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,e297dfa46353946d6c140e4513dd4525",
-            "Clone9_N1.fastp.fasta:md5,63a17d136548fc98f34c8d98006cc7da",
-            "Control_N3.fastp.fasta:md5,d9980a598ece252e19d6c9ebefd51861",
-            "Control_N1.fastp.fasta:md5,e964e05ce2c93937a8e76602f2e08150",
-            "Clone9_N2.fastp.fasta:md5,b1ca39e6e1e75ee7d654d9ccfb35e906",
-            "Control_N2.fastp.fasta:md5,8cefbc494be7b363b19c10b8c00366b2",
-            "Clone1_N3.fastp.fasta:md5,4012282462dde0750f09cec883304cc3",
-            "Clone9_N3.fastp.fasta:md5,f733e20eb8d2a2009ca82464e8ccb148"
+            "Clone1_N1.fastp.fasta:md5,ba5a705fbc7c4aadd259c29c3a443d97",
+            "Clone9_N1.fastp.fasta:md5,3e9a4ce784cbcdb946a3e271cc899da9",
+            "Control_N3.fastp.fasta:md5,850c3a525359f14ea488fcd0eedc2e36",
+            "Control_N1.fastp.fasta:md5,446f3452ffac337eb1afa5861c2ba94a",
+            "Clone9_N2.fastp.fasta:md5,168aa25977927be9480f9fe2399a82c7",
+            "Control_N2.fastp.fasta:md5,5018f8b15dbd524eb7dd0ce39e9b7101",
+            "Clone1_N3.fastp.fasta:md5,7a6c3163b377b25cf2886004ea9d4a73",
+            "Clone9_N3.fastp.fasta:md5,80a4b70ef276cf5628dfa2942c7e4988"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:52:09.114139077"
+        "timestamp": "2024-08-26T14:48:32.628512644"
     },
     "genome_quant_bam": {
         "content": [
@@ -368,20 +368,20 @@
     },
     "mirtrace_qc_passed_reads.all.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,2b7ae92e9b8fcdfa34b62e39d13e49be",
-            "Clone9_N1.fastp.fasta:md5,c82f662747004a6873580898e29e1f44",
-            "Control_N3.fastp.fasta:md5,178c466a3dae3c168dc1bdaffa647e77",
-            "Control_N1.fastp.fasta:md5,5e377b864d5d4443234b46593884514c",
-            "Clone9_N2.fastp.fasta:md5,0a676933f44f59ccbf388093e1815b22",
-            "Control_N2.fastp.fasta:md5,8b11f194e66d35d8240cabf4493950ef",
-            "Clone1_N3.fastp.fasta:md5,b52ce91e385589c82474039c32b9bc0d",
-            "Clone9_N3.fastp.fasta:md5,d1b074453b3edb85ada10bd7d82b66a8"
+            "Clone1_N1.fastp.fasta:md5,3761badda2e1c2dd2da3eb1bbfe6e1f8",
+            "Clone9_N1.fastp.fasta:md5,97310b5094e02329f412bae2657a2765",
+            "Control_N3.fastp.fasta:md5,f24ddebb1b012ec3817b88ff2e8989ea",
+            "Control_N1.fastp.fasta:md5,888c2e9639dd152d2f63e3c00019376b",
+            "Clone9_N2.fastp.fasta:md5,7f3879545cf3beb43af71ce83430abbf",
+            "Control_N2.fastp.fasta:md5,16e03efca3b17ec279658ad1556f52e4",
+            "Clone1_N3.fastp.fasta:md5,c6f029e821dceb6d60869a8f3e6e8198",
+            "Clone9_N3.fastp.fasta:md5,43d45f4416d0028f9adadd0f5ca44d9c"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:51:59.69892856"
+        "timestamp": "2024-08-26T14:48:10.730193602"
     },
     "mirna_quant_mirtop": {
         "content": [
@@ -397,4 +397,4 @@
         },
         "timestamp": "2024-08-22T22:51:32.899870265"
     }
-}
\ No newline at end of file
+}
diff --git a/tests/test_index.nf.test.snap b/tests/test_index.nf.test.snap
index 2d35b6f4..323a9cdb 100644
--- a/tests/test_index.nf.test.snap
+++ b/tests/test_index.nf.test.snap
@@ -18,19 +18,19 @@
     },
     "mirtrace": {
         "content": [
-            "mirtrace-stats-rnatype.tsv:md5,fdba5f1ccad362dfa2a2e219aa5b16e7",
-            "mirtrace-stats-length.tsv:md5,c09651fb8f8417aafad3f3173ae855df",
-            "mirtrace-stats-contamination_basic.tsv:md5,baeeda551a91def51b0d945b4c1ea8a2",
-            "mirtrace-stats-contamination_detailed.tsv:md5,3256b063ab94df31154104416abdeafe",
-            "mirtrace-stats-phred.tsv:md5,4b8fa6f5aaeb4f2e43fcb1afa40ebcfa",
-            "mirtrace-stats-qcstatus.tsv:md5,00a31eee51e4b2306e83fcdc65790da3",
-            "mirtrace-stats-mirna-complexity.tsv:md5,6f7c2ced9fae8315b2ebb91dd6db9638"
+            "mirtrace-stats-rnatype.tsv:md5,8a333ff54c189c4a5a175a619139a9ac",
+            "mirtrace-stats-length.tsv:md5,0609fcb0014f0d2af3308655b2418635",
+            "mirtrace-stats-contamination_basic.tsv:md5,a67910702b13918a7d53f1283119f899",
+            "mirtrace-stats-contamination_detailed.tsv:md5,feb096d380e1ae62b4e73d54ed79e891",
+            "mirtrace-stats-phred.tsv:md5,3f645df09c8eb314577cf6c4afda10f4",
+            "mirtrace-stats-qcstatus.tsv:md5,5fdd73860d2df454e21593df68975459",
+            "mirtrace-stats-mirna-complexity.tsv:md5,fce67408e9a9ab4a1a6f97e7e23ea2c8"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:10:40.727064117"
+        "timestamp": "2024-08-26T14:59:18.343473208"
     },
     "mirna_quant_reference": {
         "content": [
@@ -193,7 +193,7 @@
             "fastqc_overrepresented_sequences_plot.txt:md5,d861a4a956a3023efa19b1259d8665b2",
             true,
             "fastqc_sequence_counts_plot-1.txt:md5,37d8ae6c5734eb2679e65e46c9af9101",
-            "mirtrace_complexity_plot.txt:md5,5f78d6f559a9642e68e1fd74ac2c11ca",
+            "mirtrace_complexity_plot.txt:md5,bb92ed0659dddb15d3e01686acef85b5",
             "fastqc_per_sequence_gc_content_plot-1_Percentages.txt:md5,edf5130b48b0814788867dd42e9cf407",
             "multiqc_citations.txt:md5,3adbccd17a42d0d5d97ee7ebb476f433",
             true,
@@ -206,14 +206,14 @@
             "fastqc_per_base_n_content_plot.txt:md5,fb8a49467d1679dbf716e1f00c1f25e5",
             "fastp-seq-quality-plot_Read_1_After_filtering.txt:md5,b1481a9fbf5ea541b39aed99b51d616f",
             "fastqc_per_sequence_quality_scores_plot.txt:md5,38dbd6509de7f1beac17e44acb8336be",
-            "mirtrace_qc_plot.txt:md5,c436d017382baed6617fc3c1ad8ab41d",
+            "mirtrace_qc_plot.txt:md5,9036243402f6248214dc0458cb1291e9",
             "fastqc_per_sequence_quality_scores_plot-1.txt:md5,69f4459318311103fe71a5d1d3b2c076",
-            "mirtrace_length_plot.txt:md5,2366f10eb8bd3c32d2b35e2df20c786c",
+            "mirtrace_length_plot.txt:md5,86a0d54324cbe4817b112b02d4872cbb",
             true,
             "fastqc_overrepresented_sequences_plot-1.txt:md5,1de000de50cc7516bb9d996def14c6eb",
             "fastqc-status-check-heatmap-1.txt:md5,e64c353797e6dc057d10b3194ca6b20d",
             "fastqc_sequence_counts_plot.txt:md5,384516be5885fdeac59e70c17f1413c2",
-            "mirtrace_rna_categories_plot.txt:md5,8665376e2a123e1661f82cbbee54789f",
+            "mirtrace_rna_categories_plot.txt:md5,9a57e6b3a3dd75906134030d25f6a7a9",
             "fastp-seq-quality-plot_Read_1_Before_filtering.txt:md5,65685440fcb927115ac30b01133e2f92",
             true,
             "fastqc_per_base_sequence_quality_plot.txt:md5,80ea53d94917cadcb41f3fdb56cba014",
@@ -235,7 +235,7 @@
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:11:37.214190607"
+        "timestamp": "2024-08-26T14:59:48.680287029"
     },
     "untar_bowtie_index": {
         "content": [
@@ -271,20 +271,20 @@
     },
     "mirtrace_qc_passed_reads.rnatype_unknown.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,e297dfa46353946d6c140e4513dd4525",
-            "Clone9_N1.fastp.fasta:md5,63a17d136548fc98f34c8d98006cc7da",
-            "Control_N3.fastp.fasta:md5,d9980a598ece252e19d6c9ebefd51861",
-            "Control_N1.fastp.fasta:md5,e964e05ce2c93937a8e76602f2e08150",
-            "Clone9_N2.fastp.fasta:md5,b1ca39e6e1e75ee7d654d9ccfb35e906",
-            "Control_N2.fastp.fasta:md5,8cefbc494be7b363b19c10b8c00366b2",
-            "Clone1_N3.fastp.fasta:md5,4012282462dde0750f09cec883304cc3",
-            "Clone9_N3.fastp.fasta:md5,f733e20eb8d2a2009ca82464e8ccb148"
+            "Clone1_N1.fastp.fasta:md5,ba5a705fbc7c4aadd259c29c3a443d97",
+            "Clone9_N1.fastp.fasta:md5,3e9a4ce784cbcdb946a3e271cc899da9",
+            "Control_N3.fastp.fasta:md5,850c3a525359f14ea488fcd0eedc2e36",
+            "Control_N1.fastp.fasta:md5,446f3452ffac337eb1afa5861c2ba94a",
+            "Clone9_N2.fastp.fasta:md5,168aa25977927be9480f9fe2399a82c7",
+            "Control_N2.fastp.fasta:md5,5018f8b15dbd524eb7dd0ce39e9b7101",
+            "Clone1_N3.fastp.fasta:md5,7a6c3163b377b25cf2886004ea9d4a73",
+            "Clone9_N3.fastp.fasta:md5,80a4b70ef276cf5628dfa2942c7e4988"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:10:57.082105969"
+        "timestamp": "2024-08-26T14:59:34.948240231"
     },
     "bowtie_index_mirna_mature": {
         "content": [
@@ -318,20 +318,20 @@
     },
     "mirtrace_qc_passed_reads.all.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,2b7ae92e9b8fcdfa34b62e39d13e49be",
-            "Clone9_N1.fastp.fasta:md5,c82f662747004a6873580898e29e1f44",
-            "Control_N3.fastp.fasta:md5,178c466a3dae3c168dc1bdaffa647e77",
-            "Control_N1.fastp.fasta:md5,5e377b864d5d4443234b46593884514c",
-            "Clone9_N2.fastp.fasta:md5,0a676933f44f59ccbf388093e1815b22",
-            "Control_N2.fastp.fasta:md5,8b11f194e66d35d8240cabf4493950ef",
-            "Clone1_N3.fastp.fasta:md5,b52ce91e385589c82474039c32b9bc0d",
-            "Clone9_N3.fastp.fasta:md5,d1b074453b3edb85ada10bd7d82b66a8"
+            "Clone1_N1.fastp.fasta:md5,3761badda2e1c2dd2da3eb1bbfe6e1f8",
+            "Clone9_N1.fastp.fasta:md5,97310b5094e02329f412bae2657a2765",
+            "Control_N3.fastp.fasta:md5,f24ddebb1b012ec3817b88ff2e8989ea",
+            "Control_N1.fastp.fasta:md5,888c2e9639dd152d2f63e3c00019376b",
+            "Clone9_N2.fastp.fasta:md5,7f3879545cf3beb43af71ce83430abbf",
+            "Control_N2.fastp.fasta:md5,16e03efca3b17ec279658ad1556f52e4",
+            "Clone1_N3.fastp.fasta:md5,c6f029e821dceb6d60869a8f3e6e8198",
+            "Clone9_N3.fastp.fasta:md5,43d45f4416d0028f9adadd0f5ca44d9c"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:10:45.973826356"
+        "timestamp": "2024-08-26T14:59:21.2869702"
     },
     "mirna_quant_mirtop": {
         "content": [
@@ -347,4 +347,4 @@
         },
         "timestamp": "2024-08-22T22:10:16.715546319"
     }
-}
\ No newline at end of file
+}
diff --git a/tests/test_no_genome.nf.test.snap b/tests/test_no_genome.nf.test.snap
index c9a5477e..1035e8fb 100644
--- a/tests/test_no_genome.nf.test.snap
+++ b/tests/test_no_genome.nf.test.snap
@@ -18,19 +18,19 @@
     },
     "mirtrace": {
         "content": [
-            "mirtrace-stats-mirna-complexity.tsv:md5,6f7c2ced9fae8315b2ebb91dd6db9638",
-            "mirtrace-stats-length.tsv:md5,c09651fb8f8417aafad3f3173ae855df",
-            "mirtrace-stats-contamination_detailed.tsv:md5,3256b063ab94df31154104416abdeafe",
-            "mirtrace-stats-contamination_basic.tsv:md5,baeeda551a91def51b0d945b4c1ea8a2",
-            "mirtrace-stats-rnatype.tsv:md5,fdba5f1ccad362dfa2a2e219aa5b16e7",
-            "mirtrace-stats-qcstatus.tsv:md5,00a31eee51e4b2306e83fcdc65790da3",
-            "mirtrace-stats-phred.tsv:md5,4b8fa6f5aaeb4f2e43fcb1afa40ebcfa"
+            "mirtrace-stats-mirna-complexity.tsv:md5,fce67408e9a9ab4a1a6f97e7e23ea2c8",
+            "mirtrace-stats-length.tsv:md5,0609fcb0014f0d2af3308655b2418635",
+            "mirtrace-stats-contamination_detailed.tsv:md5,feb096d380e1ae62b4e73d54ed79e891",
+            "mirtrace-stats-contamination_basic.tsv:md5,a67910702b13918a7d53f1283119f899",
+            "mirtrace-stats-rnatype.tsv:md5,8a333ff54c189c4a5a175a619139a9ac",
+            "mirtrace-stats-qcstatus.tsv:md5,5fdd73860d2df454e21593df68975459",
+            "mirtrace-stats-phred.tsv:md5,3f645df09c8eb314577cf6c4afda10f4"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:12:34.488403228"
+        "timestamp": "2024-08-26T15:19:07.296656154"
     },
     "mirna_quant_reference": {
         "content": [
@@ -241,7 +241,7 @@
             "fastqc_overrepresented_sequences_plot.txt:md5,d861a4a956a3023efa19b1259d8665b2",
             true,
             "fastqc_sequence_counts_plot-1.txt:md5,37d8ae6c5734eb2679e65e46c9af9101",
-            "mirtrace_complexity_plot.txt:md5,5f78d6f559a9642e68e1fd74ac2c11ca",
+            "mirtrace_complexity_plot.txt:md5,bb92ed0659dddb15d3e01686acef85b5",
             "fastqc_per_sequence_gc_content_plot-1_Percentages.txt:md5,edf5130b48b0814788867dd42e9cf407",
             "multiqc_citations.txt:md5,3adbccd17a42d0d5d97ee7ebb476f433",
             true,
@@ -254,14 +254,14 @@
             "fastqc_per_base_n_content_plot.txt:md5,fb8a49467d1679dbf716e1f00c1f25e5",
             "fastp-seq-quality-plot_Read_1_After_filtering.txt:md5,b1481a9fbf5ea541b39aed99b51d616f",
             "fastqc_per_sequence_quality_scores_plot.txt:md5,38dbd6509de7f1beac17e44acb8336be",
-            "mirtrace_qc_plot.txt:md5,c436d017382baed6617fc3c1ad8ab41d",
+            "mirtrace_qc_plot.txt:md5,9036243402f6248214dc0458cb1291e9",
             "fastqc_per_sequence_quality_scores_plot-1.txt:md5,69f4459318311103fe71a5d1d3b2c076",
-            "mirtrace_length_plot.txt:md5,2366f10eb8bd3c32d2b35e2df20c786c",
+            "mirtrace_length_plot.txt:md5,86a0d54324cbe4817b112b02d4872cbb",
             true,
             "fastqc_overrepresented_sequences_plot-1.txt:md5,1de000de50cc7516bb9d996def14c6eb",
             "fastqc-status-check-heatmap-1.txt:md5,e64c353797e6dc057d10b3194ca6b20d",
             "fastqc_sequence_counts_plot.txt:md5,384516be5885fdeac59e70c17f1413c2",
-            "mirtrace_rna_categories_plot.txt:md5,8665376e2a123e1661f82cbbee54789f",
+            "mirtrace_rna_categories_plot.txt:md5,9a57e6b3a3dd75906134030d25f6a7a9",
             "fastp-seq-quality-plot_Read_1_Before_filtering.txt:md5,65685440fcb927115ac30b01133e2f92",
             true,
             "fastqc_per_base_sequence_quality_plot.txt:md5,80ea53d94917cadcb41f3fdb56cba014",
@@ -283,7 +283,7 @@
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:15:02.747986455"
+        "timestamp": "2024-08-26T15:19:17.521099383"
     },
     "mirna_quant_seqcluster": {
         "content": [
@@ -304,20 +304,20 @@
     },
     "mirtrace_qc_passed_reads.rnatype_unknown.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,e297dfa46353946d6c140e4513dd4525",
-            "Clone9_N1.fastp.fasta:md5,63a17d136548fc98f34c8d98006cc7da",
-            "Control_N3.fastp.fasta:md5,d9980a598ece252e19d6c9ebefd51861",
-            "Control_N1.fastp.fasta:md5,e964e05ce2c93937a8e76602f2e08150",
-            "Clone9_N2.fastp.fasta:md5,b1ca39e6e1e75ee7d654d9ccfb35e906",
-            "Control_N2.fastp.fasta:md5,8cefbc494be7b363b19c10b8c00366b2",
-            "Clone1_N3.fastp.fasta:md5,4012282462dde0750f09cec883304cc3",
-            "Clone9_N3.fastp.fasta:md5,f733e20eb8d2a2009ca82464e8ccb148"
+            "Clone1_N1.fastp.fasta:md5,ba5a705fbc7c4aadd259c29c3a443d97",
+            "Clone9_N1.fastp.fasta:md5,3e9a4ce784cbcdb946a3e271cc899da9",
+            "Control_N3.fastp.fasta:md5,850c3a525359f14ea488fcd0eedc2e36",
+            "Control_N1.fastp.fasta:md5,446f3452ffac337eb1afa5861c2ba94a",
+            "Clone9_N2.fastp.fasta:md5,168aa25977927be9480f9fe2399a82c7",
+            "Control_N2.fastp.fasta:md5,5018f8b15dbd524eb7dd0ce39e9b7101",
+            "Clone1_N3.fastp.fasta:md5,7a6c3163b377b25cf2886004ea9d4a73",
+            "Clone9_N3.fastp.fasta:md5,80a4b70ef276cf5628dfa2942c7e4988"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:13:32.848948424"
+        "timestamp": "2024-08-26T15:19:14.421401668"
     },
     "bowtie_index_mirna_mature": {
         "content": [
@@ -351,20 +351,20 @@
     },
     "mirtrace_qc_passed_reads.all.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,2b7ae92e9b8fcdfa34b62e39d13e49be",
-            "Clone9_N1.fastp.fasta:md5,c82f662747004a6873580898e29e1f44",
-            "Control_N3.fastp.fasta:md5,178c466a3dae3c168dc1bdaffa647e77",
-            "Control_N1.fastp.fasta:md5,5e377b864d5d4443234b46593884514c",
-            "Clone9_N2.fastp.fasta:md5,0a676933f44f59ccbf388093e1815b22",
-            "Control_N2.fastp.fasta:md5,8b11f194e66d35d8240cabf4493950ef",
-            "Clone1_N3.fastp.fasta:md5,b52ce91e385589c82474039c32b9bc0d",
-            "Clone9_N3.fastp.fasta:md5,d1b074453b3edb85ada10bd7d82b66a8"
+            "Clone1_N1.fastp.fasta:md5,3761badda2e1c2dd2da3eb1bbfe6e1f8",
+            "Clone9_N1.fastp.fasta:md5,97310b5094e02329f412bae2657a2765",
+            "Control_N3.fastp.fasta:md5,f24ddebb1b012ec3817b88ff2e8989ea",
+            "Control_N1.fastp.fasta:md5,888c2e9639dd152d2f63e3c00019376b",
+            "Clone9_N2.fastp.fasta:md5,7f3879545cf3beb43af71ce83430abbf",
+            "Control_N2.fastp.fasta:md5,16e03efca3b17ec279658ad1556f52e4",
+            "Clone1_N3.fastp.fasta:md5,c6f029e821dceb6d60869a8f3e6e8198",
+            "Clone9_N3.fastp.fasta:md5,43d45f4416d0028f9adadd0f5ca44d9c"
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "23.10.0"
         },
-        "timestamp": "2024-08-22T22:12:47.213844865"
+        "timestamp": "2024-08-26T15:19:10.317601475"
     },
     "mirna_quant_mirtop": {
         "content": [
@@ -380,4 +380,4 @@
         },
         "timestamp": "2024-08-22T22:12:05.154814163"
     }
-}
\ No newline at end of file
+}
diff --git a/tests/test_technical_repeats.nf.test.snap b/tests/test_technical_repeats.nf.test.snap
index 6b04897b..7472e123 100644
--- a/tests/test_technical_repeats.nf.test.snap
+++ b/tests/test_technical_repeats.nf.test.snap
@@ -17,19 +17,19 @@
     },
     "mirtrace": {
         "content": [
-            "mirtrace-stats-contamination_basic.tsv:md5,ca3f99b1b89d2674864b62bbf9c41592",
-            "mirtrace-stats-length.tsv:md5,71591c754eed9db419b91fb499f8e2ab",
-            "mirtrace-stats-qcstatus.tsv:md5,37465e5d4d756792b95f187e6406fc6b",
-            "mirtrace-stats-contamination_detailed.tsv:md5,c16e27cc433dacdd5bfff09a9aaab736",
-            "mirtrace-stats-phred.tsv:md5,1ac6fdae848cc4e39904edc361f75d1f",
-            "mirtrace-stats-mirna-complexity.tsv:md5,c69c4762a887a8e792c896dc5d3866b8",
-            "mirtrace-stats-rnatype.tsv:md5,2843855add34a73acd332a112bd80a34"
+            "mirtrace-stats-contamination_basic.tsv:md5,e27f51e118896c51ffcf4e6876da32c3",
+            "mirtrace-stats-length.tsv:md5,7b3a33f0237c050b43dff34b52edbbf2",
+            "mirtrace-stats-qcstatus.tsv:md5,9ebba807d2ef929bb0bd9029847571a8",
+            "mirtrace-stats-contamination_detailed.tsv:md5,2f3b3fd832e8c09fc4be81957b259e31",
+            "mirtrace-stats-phred.tsv:md5,e2cedb9d91521823c648365dd6606f4a",
+            "mirtrace-stats-mirna-complexity.tsv:md5,39d7405425c3db8faa3514fb33a81492",
+            "mirtrace-stats-rnatype.tsv:md5,b2a56404c01c0b44b20a03c50285cc2d"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:46:28.913796722"
+        "timestamp": "2024-08-26T15:36:54.667308127"
     },
     "mirna_quant_reference": {
         "content": [
@@ -132,15 +132,15 @@
     },
     "mirtrace_qc_passed_reads.rnatype_unknown.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,f49d63f3d05aeb349f58f2bb95552332",
-            "Control_N1.fastp.fasta:md5,b34c20e0736351db5d0d1d3236de18ec",
-            "Clone9_N3.fastp.fasta:md5,726d1d14a88d7b816bb97bab9f006c45"
+            "Clone1_N1.fastp.fasta:md5,869717d19534f6f89aa43bcad6256603",
+            "Control_N1.fastp.fasta:md5,35910fa3cfd3956634f562d31dfc92b1",
+            "Clone9_N3.fastp.fasta:md5,9c00a9ad6365891b828f381baf600c31"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:46:32.009856508"
+        "timestamp": "2024-08-26T15:36:55.12102921"
     },
     "genome_quant_bam": {
         "content": [
@@ -198,15 +198,15 @@
     },
     "mirtrace_qc_passed_reads.all.collapsed": {
         "content": [
-            "Clone1_N1.fastp.fasta:md5,7630d5d8f047d2f7e9492598e6f97c84",
-            "Control_N1.fastp.fasta:md5,534de89c8354a874458497804dcb7785",
-            "Clone9_N3.fastp.fasta:md5,0f2ef6c209a0b591d4eff5d77b713957"
+            "Clone1_N1.fastp.fasta:md5,1c1c8ceb14bafb43548abca69e61ffa0",
+            "Control_N1.fastp.fasta:md5,643d639fc1a56f2fa7616a1ba8b8dd22",
+            "Clone9_N3.fastp.fasta:md5,b0d3a983db699e9c429012a02de33268"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:46:36.356862083"
+        "timestamp": "2024-08-26T15:36:56.134008484"
     },
     "mirna_quant_mirtop": {
         "content": [
diff --git a/tests/test_umi.nf.test.snap b/tests/test_umi.nf.test.snap
index 64e295ac..df5aaa96 100644
--- a/tests/test_umi.nf.test.snap
+++ b/tests/test_umi.nf.test.snap
@@ -28,19 +28,19 @@
     },
     "mirtrace": {
         "content": [
-            "mirtrace-stats-contamination_detailed.tsv:md5,428d2fd6ea0a6f2af1018a557e89bece",
-            "mirtrace-stats-mirna-complexity.tsv:md5,cd2f37963adeee159764a89688a4a6a5",
-            "mirtrace-stats-length.tsv:md5,3edbc31452dba97f8b829e3f8f635955",
-            "mirtrace-stats-contamination_basic.tsv:md5,3d54b37ab3206e9fec909fe3ea1a4777",
-            "mirtrace-stats-qcstatus.tsv:md5,de4f8a670b736bedf348d358cfdfb9fc",
+            "mirtrace-stats-contamination_detailed.tsv:md5,4015530b4d5935b241eb70bf0c51dfad",
+            "mirtrace-stats-mirna-complexity.tsv:md5,9ed7b0c56b5fe2913cadf9a47f2d4731",
+            "mirtrace-stats-length.tsv:md5,b9f57e2e6c950a065a28769928d7dbdd",
+            "mirtrace-stats-contamination_basic.tsv:md5,cf6ced069895d8d6183a5b391c532d1c",
+            "mirtrace-stats-qcstatus.tsv:md5,bc24cec6cfa63462005d86dba95cfdfd",
             "mirtrace-stats-phred.tsv:md5,8cf9fc2223b9aeb50f92c8845edbf535",
-            "mirtrace-stats-rnatype.tsv:md5,00e584439bec82f5de8d6485a73dec37"
+            "mirtrace-stats-rnatype.tsv:md5,b485dc91adfc66a2237f145430dfbc21"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:52:15.212444825"
+        "timestamp": "2024-08-26T15:42:33.712941492"
     },
     "mirna_quant_reference": {
         "content": [
@@ -153,7 +153,7 @@
             "fastp_filtered_reads_plot.txt:md5,3aaa79e1ede44347971c26100d9e954b",
             true,
             "fastqc_sequence_counts_plot-1.txt:md5,24744e039ce4dbcbacf42edbfd642a8b",
-            "mirtrace_complexity_plot.txt:md5,5a860a872f793250b8c4482d031176a8",
+            "mirtrace_complexity_plot.txt:md5,03b2a5783383193eeee4a3a094612112",
             "fastqc_per_sequence_gc_content_plot-1_Percentages.txt:md5,351f949c0abf4fb7587f3f5d9a28d461",
             "multiqc_citations.txt:md5,3adbccd17a42d0d5d97ee7ebb476f433",
             true,
@@ -166,13 +166,13 @@
             "fastqc_per_base_n_content_plot.txt:md5,5b5b8cee3162d092c0bcddffbd000f34",
             "fastp-seq-quality-plot_Read_1_After_filtering.txt:md5,66a47c7ce00ede2053f8e6eb20ec3417",
             "fastqc_per_sequence_quality_scores_plot.txt:md5,3aa99649540afc898d32d2e49a364487",
-            "mirtrace_qc_plot.txt:md5,b08d11ea51c54e615f9608002644c787",
+            "mirtrace_qc_plot.txt:md5,b8e9e241fd258a3ddd13ae407d6dd746",
             "fastqc_per_sequence_quality_scores_plot-1.txt:md5,4108da6fe352558a652ee2b17d609e07",
-            "mirtrace_length_plot.txt:md5,440a84ce9bbdb89b736e4e2446382665",
+            "mirtrace_length_plot.txt:md5,3f84d4b3dd20053815b7524bc43f0261",
             true,
             "fastqc-status-check-heatmap-1.txt:md5,cb2ea844834808ae4c95c6440269cf2e",
             "fastqc_sequence_counts_plot.txt:md5,5e5c5132ff1969dfa40cb8b1eadf7a46",
-            "mirtrace_rna_categories_plot.txt:md5,6d08c297377a6241c4c1e82278d71f32",
+            "mirtrace_rna_categories_plot.txt:md5,d7d616cd1ef0797727299f8820f50ab9",
             "fastp-seq-quality-plot_Read_1_Before_filtering.txt:md5,f36b7cfd3057b26281367397db45033a",
             true,
             "fastqc_per_base_sequence_quality_plot.txt:md5,e2e187bc0b0c1f0d1abb3b666945c7b3",
@@ -180,7 +180,7 @@
             "fastp-seq-content-n-plot_Read_1_After_filtering.txt:md5,bbad2035ada86867c4ed579a93b78d64",
             true,
             true,
-            "mirtrace_contamination_check_plot.txt:md5,7f12917ce506127a729edb733fdda511",
+            "mirtrace_contamination_check_plot.txt:md5,46c2709ae5228d93ff117b88f9792620",
             "fastqc_adapter_content_plot.txt:md5,de1d7324ff5146b49fc9a2e6d4633962",
             "fastqc_sequence_duplication_levels_plot.txt:md5,fe7598e49f93bb980a7675a2bb4bd3b5",
             "fastqc_per_sequence_gc_content_plot_Percentages.txt:md5,c2f2f9282a50c3eef475664cc969b8ec",
@@ -192,10 +192,10 @@
             "fastp-seq-content-gc-plot_Read_1_After_filtering.txt:md5,d673e3b18c40c5af1edccffba386d678"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:52:47.905877394"
+        "timestamp": "2024-08-26T15:42:34.218114878"
     },
     "mirna_quant_seqcluster": {
         "content": [
@@ -210,14 +210,14 @@
     },
     "mirtrace_qc_passed_reads.rnatype_unknown.collapsed": {
         "content": [
-            "SRX8195118_SRR11631014.fastp.fasta:md5,7db07b8c0b9e2b484eb3d42a04e480d1",
-            "SRX8195117_SRR11631013.fastp.fasta:md5,eb1ba9fa6f7d956e5d650fdd306d5634"
+            "SRX8195118_SRR11631014.fastp.fasta:md5,5aff6ac8bf0f5637b730ad8f49ac7a47",
+            "SRX8195117_SRR11631013.fastp.fasta:md5,08902643a45e944be04ad62dd4eaa610"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:52:32.630636315"
+        "timestamp": "2024-08-26T15:42:34.012175996"
     },
     "genome_quant_bam": {
         "content": [
@@ -281,14 +281,14 @@
     },
     "mirtrace_qc_passed_reads.all.collapsed": {
         "content": [
-            "SRX8195118_SRR11631014.fastp.fasta:md5,99e2ce92ce102bd3fedc3a9d3b926873",
-            "SRX8195117_SRR11631013.fastp.fasta:md5,e0e31d882568a7853dea75b3c595108f"
+            "SRX8195118_SRR11631014.fastp.fasta:md5,472b73017f8a22c10855fd196f19c1c7",
+            "SRX8195117_SRR11631013.fastp.fasta:md5,d05deb2132050f04843341d613cc6e65"
         ],
         "meta": {
-            "nf-test": "0.9.0",
-            "nextflow": "23.10.0"
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.4"
         },
-        "timestamp": "2024-08-22T22:52:22.862929991"
+        "timestamp": "2024-08-26T15:42:33.842847298"
     },
     "mirna_quant_mirtop": {
         "content": [