From a6e64bd9cf14367e2ba2a864f2fb81a94737c9b4 Mon Sep 17 00:00:00 2001 From: Christopher Mohr Date: Thu, 2 May 2024 13:12:41 +0000 Subject: [PATCH] change conda channels --- modules/local/datatable_merge.nf | 2 +- modules/local/mirtop_quant.nf | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/local/datatable_merge.nf b/modules/local/datatable_merge.nf index c71b9c4d..fcfed309 100644 --- a/modules/local/datatable_merge.nf +++ b/modules/local/datatable_merge.nf @@ -1,7 +1,7 @@ process TABLE_MERGE { label 'process_medium' - conda 'conda-base::r-data.table=1.12.2' + conda 'conda-forge::r-data.table=1.12.2' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/r-data.table:1.12.2' : 'biocontainers/r-data.table:1.12.2' }" diff --git a/modules/local/mirtop_quant.nf b/modules/local/mirtop_quant.nf index ab38c93d..7d8d6767 100644 --- a/modules/local/mirtop_quant.nf +++ b/modules/local/mirtop_quant.nf @@ -1,7 +1,7 @@ process MIRTOP_QUANT { label 'process_medium' - conda 'mirtop=0.4.25 bioconda::samtools=1.15.1 conda-base::r-base=4.1.1 conda-base::r-data.table=1.14.2' + conda 'mirtop=0.4.25 bioconda::samtools=1.15.1 conda-forge::r-base=4.1.1 conda-forge::r-data.table=1.14.2' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/mulled-v2-0c13ef770dd7cc5c76c2ce23ba6669234cf03385:63be019f50581cc5dfe4fc0f73ae50f2d4d661f7-0' : 'biocontainers/mulled-v2-0c13ef770dd7cc5c76c2ce23ba6669234cf03385:63be019f50581cc5dfe4fc0f73ae50f2d4d661f7-0' }"