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Adding spring-files #1218

Merged
merged 1 commit into from
May 22, 2024
Merged

Adding spring-files #1218

merged 1 commit into from
May 22, 2024

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asp8200
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@asp8200 asp8200 commented May 22, 2024

Needed for tests of new functionality in Sarek for handling fastq.gz.spring-files as input. nf-core/sarek#1534

From our usual test_1.fastq.gz and test_2.fastq.gz, I got

test_1.fastq.gz.spring
test_2.fastq.gz.spring
test_R1_R2.fastq.gz.spring

and they were made with spring 1.1.1 like this:

spring -c -g -i test_1.fastq.gz -o test_1.fastq.gz.spring
spring -c -g -i test_2.fastq.gz -o test_2.fastq.gz.spring
spring -c -g -i test_1.fastq.gz test_2.fastq.gz -o test_R1_R2.fastq.gz.spring

@asp8200 asp8200 marked this pull request as ready for review May 22, 2024 13:22
@maxulysse maxulysse merged commit dc2830a into nf-core:sarek3 May 22, 2024
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asp8200 commented May 22, 2024

@maxulysse : You sure this should have gone to the branch sarek3? It seems that all the other test-configs over in the sarek-repo are fetching data from the modules-branch.

@maxulysse
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Yeah it's fine

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2 participants