{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":121360155,"defaultBranch":"master","name":"tools","ownerLogin":"nf-core","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-02-13T08:57:15.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35520196?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1725903698.0","currentOid":""},"activityList":{"items":[{"before":"7ad930e534650a4ef1ee666e797e9fff58f5bb57","after":null,"ref":"refs/heads/sateeshperi-patch-1","pushedAt":"2024-09-09T17:41:38.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"sateeshperi","name":"Sateesh_Peri","path":"/sateeshperi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33637490?s=80&v=4"}},{"before":"593ffef9fc1818edb06cd1949551852ba7b043c8","after":"6293dd0a2116b3145944011936fe354f18be90b2","ref":"refs/heads/container_cache_download","pushedAt":"2024-09-08T22:38:33.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"},"commit":{"message":"Copy from the library directory if set","shortMessageHtmlLink":"Copy from the library directory if set"}},{"before":"116714f077016cbbbeda054200d12652a4964499","after":"593ffef9fc1818edb06cd1949551852ba7b043c8","ref":"refs/heads/container_cache_download","pushedAt":"2024-09-08T21:15:27.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"},"commit":{"message":"bugfix: don't overwrite the cached container","shortMessageHtmlLink":"bugfix: don't overwrite the cached container"}},{"before":null,"after":"7ad930e534650a4ef1ee666e797e9fff58f5bb57","ref":"refs/heads/sateeshperi-patch-1","pushedAt":"2024-09-08T15:51:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"sateeshperi","name":"Sateesh_Peri","path":"/sateeshperi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/33637490?s=80&v=4"},"commit":{"message":"Update gitpod.Dockerfile\n\nupdate and pin nf-test version","shortMessageHtmlLink":"Update gitpod.Dockerfile"}},{"before":null,"after":"8daad8ab2936f7e4b06d30efd1d0f1537e8b8777","ref":"refs/heads/update-modules","pushedAt":"2024-09-08T00:08:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"[automated] Fix code linting","shortMessageHtmlLink":"[automated] Fix code linting"}},{"before":"89633131293d4d35728ab1be803d61d587932ce9","after":"116714f077016cbbbeda054200d12652a4964499","ref":"refs/heads/container_cache_download","pushedAt":"2024-09-07T22:44:18.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"},"commit":{"message":"bugfix: don't overwrite the cached container","shortMessageHtmlLink":"bugfix: don't overwrite the cached container"}},{"before":"e0962d02c2bfa51c9cf3340cb6c8bc4ed52f9b38","after":"89633131293d4d35728ab1be803d61d587932ce9","ref":"refs/heads/container_cache_download","pushedAt":"2024-09-07T22:41:17.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"},"commit":{"message":"bugfix: don't overwrite the cached container","shortMessageHtmlLink":"bugfix: don't overwrite the cached container"}},{"before":"78650af6d406834671f0f754e91ee8767dbf776c","after":"e0962d02c2bfa51c9cf3340cb6c8bc4ed52f9b38","ref":"refs/heads/container_cache_download","pushedAt":"2024-09-07T22:35:14.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"},"commit":{"message":"bugfix: don't overwrite the cached container","shortMessageHtmlLink":"bugfix: don't overwrite the cached container"}},{"before":"4fa6d67ce0347ab4e41268c0ca8fc5e66db396ad","after":null,"ref":"refs/heads/update-modules","pushedAt":"2024-09-07T22:34:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"}},{"before":"4e06915dc86b416be0265cb4950e3c1db0cbbf16","after":null,"ref":"refs/heads/revert-2983-commands-to-pipelines","pushedAt":"2024-09-07T22:33:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"}},{"before":"984283ee32688843fae9eb451e97dcce4f5a6f2b","after":null,"ref":"refs/heads/container_registry","pushedAt":"2024-09-07T22:32:29.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"}},{"before":null,"after":"78650af6d406834671f0f754e91ee8767dbf776c","ref":"refs/heads/container_cache_download","pushedAt":"2024-09-07T12:14:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"muffato","name":"Matthieu Muffato","path":"/muffato","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/623458?s=80&v=4"},"commit":{"message":"Create symlinks in the cache *and* output directory","shortMessageHtmlLink":"Create symlinks in the cache *and* output directory"}},{"before":"16d66cb82b966d320afb768027f527d2953f5ee4","after":"8e47a33202c8f9a6a8f554620c897d2cefd1da53","ref":"refs/heads/dev","pushedAt":"2024-09-06T15:25:02.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Merge pull request #3148 from mirpedrol/lint-release\n\nrun `nf-core lint --release` on PRs to master","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2496880472\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3148\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3148/hovercard\" href=\"https://github.com/nf-core/tools/pull/3148\">#3148</a> from mirpedrol/lint-release"}},{"before":"d6bd738156a59a879227fdab7e9464f1e127a87e","after":"16d66cb82b966d320afb768027f527d2953f5ee4","ref":"refs/heads/dev","pushedAt":"2024-09-06T14:36:05.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Merge pull request #3161 from ewels/module-lint-no-name\n\nDon't test conda `environment.yml` `name` attribute","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2510376113\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3161\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3161/hovercard\" href=\"https://github.com/nf-core/tools/pull/3161\">#3161</a> from ewels/module-lint-no-name"}},{"before":"1d195456f1529c8604aea47390197a9fec71281d","after":"fd7a433a4f4063a1e0eb489e815020b04fa7789a","ref":"refs/heads/renovate/astral-sh-ruff-pre-commit-0.x","pushedAt":"2024-09-05T19:12:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.4","shortMessageHtmlLink":"Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.4"}},{"before":"308baef238ffb33f620fb6a8bfd2a2f50338f3b8","after":"d6bd738156a59a879227fdab7e9464f1e127a87e","ref":"refs/heads/dev","pushedAt":"2024-09-05T12:37:59.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"mahesh-panchal","name":"Mahesh Binzer-Panchal","path":"/mahesh-panchal","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15652539?s=80&v=4"},"commit":{"message":"Merge pull request #3159 from mahesh-panchal/patch_conda_gitpod\n\nAdd --update-all flag to conda in Gitpod","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2507228706\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3159\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3159/hovercard\" href=\"https://github.com/nf-core/tools/pull/3159\">#3159</a> from mahesh-panchal/patch_conda_gitpod"}},{"before":"25224a03db8d16767e4241982f6bf66829a03b21","after":"308baef238ffb33f620fb6a8bfd2a2f50338f3b8","ref":"refs/heads/dev","pushedAt":"2024-09-05T08:17:11.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"nvnieuwk","name":"Nicolas Vannieuwkerke","path":"/nvnieuwk","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/101190534?s=80&v=4"},"commit":{"message":"Merge pull request #3156 from nvnieuwk/fix/tool-subtool-same-name\n\nFix issue where tool and subtool have the same name","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2503102980\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3156\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3156/hovercard\" href=\"https://github.com/nf-core/tools/pull/3156\">#3156</a> from nvnieuwk/fix/tool-subtool-same-name"}},{"before":"3d475d553fa7074ddfa06affc2cdff2a69d28990","after":"25224a03db8d16767e4241982f6bf66829a03b21","ref":"refs/heads/dev","pushedAt":"2024-09-01T15:24:13.000Z","pushType":"pr_merge","commitsCount":15,"pusher":{"login":"ewels","name":"Phil Ewels","path":"/ewels","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/465550?s=80&v=4"},"commit":{"message":"Merge pull request #3099 from mirpedrol/test-template-customisation\n\nTemplate: Add tests to ensure all files are part of a template customisation group and all groups are tested","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2448055417\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3099\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3099/hovercard\" href=\"https://github.com/nf-core/tools/pull/3099\">#3099</a> from mirpedrol/test-template-customisation"}},{"before":null,"after":"94d28d177c688c7071a0fc11b27414eae922a486","ref":"refs/heads/renovate/editorconfig-checker-editorconfig-checker.python-3.x","pushedAt":"2024-09-01T03:58:39.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update pre-commit hook editorconfig-checker/editorconfig-checker.python to v3","shortMessageHtmlLink":"Update pre-commit hook editorconfig-checker/editorconfig-checker.pyth…"}},{"before":null,"after":"d67733cb05348d4430cf78d3fad90afc59dbe0ef","ref":"refs/heads/renovate/pytest-textual-snapshot-1.x","pushedAt":"2024-09-01T03:58:35.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update dependency pytest-textual-snapshot to v1","shortMessageHtmlLink":"Update dependency pytest-textual-snapshot to v1"}},{"before":null,"after":"17eb14364381b7d59abff34eedeb58bfcaa88d35","ref":"refs/heads/renovate/textual-dev-1.x","pushedAt":"2024-09-01T03:58:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update dependency textual-dev to v1.6.1","shortMessageHtmlLink":"Update dependency textual-dev to v1.6.1"}},{"before":null,"after":"71cc0ce255bfe4ef33505f97bb86a63f5673a29d","ref":"refs/heads/renovate/textual-0.x","pushedAt":"2024-09-01T01:36:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update dependency textual to v0.79.1","shortMessageHtmlLink":"Update dependency textual to v0.79.1"}},{"before":null,"after":"1be881e4d0047d1d8d037afdd09c2353ec016213","ref":"refs/heads/renovate/pre-commit-mirrors-mypy-1.x","pushedAt":"2024-09-01T01:36:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update pre-commit hook pre-commit/mirrors-mypy to v1.11.2","shortMessageHtmlLink":"Update pre-commit hook pre-commit/mirrors-mypy to v1.11.2"}},{"before":null,"after":"1d195456f1529c8604aea47390197a9fec71281d","ref":"refs/heads/renovate/astral-sh-ruff-pre-commit-0.x","pushedAt":"2024-09-01T01:36:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"renovate[bot]","name":null,"path":"/apps/renovate","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/2740?s=80&v=4"},"commit":{"message":"Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.3","shortMessageHtmlLink":"Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.3"}},{"before":"4e385ab3cb519ffc6fc93ea6e20b512e8410b9e5","after":"3d475d553fa7074ddfa06affc2cdff2a69d28990","ref":"refs/heads/dev","pushedAt":"2024-08-29T10:11:49.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"mirpedrol","name":"Júlia Mir Pedrol","path":"/mirpedrol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8224255?s=80&v=4"},"commit":{"message":"Merge pull request #3147 from mirpedrol/module-pipeline-same-name\n\nLinting: handle cases where the directory path contains the name of the component","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2493685940\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3147\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3147/hovercard\" href=\"https://github.com/nf-core/tools/pull/3147\">#3147</a> from mirpedrol/module-pipeline-same-name"}},{"before":"b4acddc9c64b3aaf61d709023f5be67707a8d659","after":"4e385ab3cb519ffc6fc93ea6e20b512e8410b9e5","ref":"refs/heads/dev","pushedAt":"2024-08-28T07:34:36.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"mirpedrol","name":"Júlia Mir Pedrol","path":"/mirpedrol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8224255?s=80&v=4"},"commit":{"message":"Merge pull request #3128 from mirpedrol/template-customisation-nfcoremodules\n\nTemplate: add option to exclude nf-core components from pipeline template","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2477895074\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3128\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3128/hovercard\" href=\"https://github.com/nf-core/tools/pull/3128\">#3128</a> from mirpedrol/template-customisation-nfcore…"}},{"before":"0de86f987dffd8ac28a7208293973554fe454ad9","after":"df23fa0db9985e213209ec4b427c0b42e9376c62","ref":"refs/heads/pre-commit","pushedAt":"2024-08-27T15:50:11.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"feat: Add lint-pipeline test","shortMessageHtmlLink":"feat: Add lint-pipeline test"}},{"before":"7d23535b3f4040b53fe34092ed74fdf84c7494d5","after":"b4acddc9c64b3aaf61d709023f5be67707a8d659","ref":"refs/heads/dev","pushedAt":"2024-08-27T14:43:01.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"mirpedrol","name":"Júlia Mir Pedrol","path":"/mirpedrol","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8224255?s=80&v=4"},"commit":{"message":"Merge pull request #3143 from mirpedrol/fix-sync-dir\n\nfix syncing a pipeline from current directory","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2489490636\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3143\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3143/hovercard\" href=\"https://github.com/nf-core/tools/pull/3143\">#3143</a> from mirpedrol/fix-sync-dir"}},{"before":"ee85104ac861c10af9f20ff7c60f174847294d04","after":"7d23535b3f4040b53fe34092ed74fdf84c7494d5","ref":"refs/heads/dev","pushedAt":"2024-08-27T14:23:59.000Z","pushType":"pr_merge","commitsCount":70,"pusher":{"login":"nvnieuwk","name":"Nicolas Vannieuwkerke","path":"/nvnieuwk","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/101190534?s=80&v=4"},"commit":{"message":"Merge pull request #3116 from nvnieuwk/feat/linting-nf-schema\n\nnf-schema support","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2465938331\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nf-core/tools/issues/3116\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/nf-core/tools/pull/3116/hovercard\" href=\"https://github.com/nf-core/tools/pull/3116\">#3116</a> from nvnieuwk/feat/linting-nf-schema"}},{"before":"a05189cf04d41e85674a85fc2af9e7178b8c3a58","after":"0de86f987dffd8ac28a7208293973554fe454ad9","ref":"refs/heads/pre-commit","pushedAt":"2024-08-26T16:28:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"[automated] Update CHANGELOG.md","shortMessageHtmlLink":"[automated] Update CHANGELOG.md"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEsTF0RwA","startCursor":null,"endCursor":null}},"title":"Activity · nf-core/tools"}