Renovate Dashboard 🤖

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.

Pending Branch Automerge

These updates await pending status checks before automerging. Click on a checkbox to abort the branch automerge, and create a PR instead.

• Update GitHub Actions (nf-core/setup-nextflow, tj-actions/changed-files)

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Warning

Renovate failed to look up the following dependencies: Failed to look up npm package repo: https://github.com/pre-commit/mirrors-prettier rev: 'v3.1.0' hooks: - id: prettier # NOTE https://github.com/pre-commit/pre-commit/issues/3133 additional_dependencies: - prettier.

Files affected: .pre-commit-config.yaml

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Detected dependencies

github-actions

.github/workflows/add-netlify-link.yml

• tj-actions/changed-files v45@4edd678ac3f81e2dc578756871e4d00c19191daf
• actions/github-script v7@60a0d83039c74a4aee543508d2ffcb1c3799cdea

.github/workflows/add-tools-api-docs.yml

• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/setup-node v4@39370e3970a6d050c480ffad4ff0ed4d3fdee5af
• actions/setup-python v5@0b93645e9fea7318ecaed2b359559ac225c90a2b
• peter-evans/create-pull-request v7@5e914681df9dc83aa4e4905692ca88beb2f9e91f

.github/workflows/broken-link-checker.yml

• jakepartusch/wait-for-netlify-action v1.4@f1e137043864b9ab9034ae3a5adc1c108e3f1a48
• JustinBeckwith/linkinator-action v1@3d5ba091319fa7b0ac14703761eebb7d100e6f6d

.github/workflows/build-json-files-and-md-cache.yml

• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/setup-node v4@39370e3970a6d050c480ffad4ff0ed4d3fdee5af
• peter-evans/create-pull-request v7@5e914681df9dc83aa4e4905692ca88beb2f9e91f

.github/workflows/fix-linting.yml

• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• peter-evans/create-or-update-comment v4@71345be0265236311c031f5c7866368bd1eff043
• actions/setup-python v5@0b93645e9fea7318ecaed2b359559ac225c90a2b
• actions/setup-node v4@39370e3970a6d050c480ffad4ff0ed4d3fdee5af
• peter-evans/create-or-update-comment v4@71345be0265236311c031f5c7866368bd1eff043
• peter-evans/create-or-update-comment v4@71345be0265236311c031f5c7866368bd1eff043
• peter-evans/create-or-update-comment v4@71345be0265236311c031f5c7866368bd1eff043
• peter-evans/create-or-update-comment v4@71345be0265236311c031f5c7866368bd1eff043

.github/workflows/linting.yml

• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/setup-node v4@39370e3970a6d050c480ffad4ff0ed4d3fdee5af
• pre-commit/action v3.0.1@2c7b3805fd2a0fd8c1884dcaebf91fc102a13ecd
• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683

.github/workflows/playwright.yml

• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/setup-node v4@39370e3970a6d050c480ffad4ff0ed4d3fdee5af
• jakepartusch/wait-for-netlify-action v1.4@f1e137043864b9ab9034ae3a5adc1c108e3f1a48
• actions/upload-artifact v4@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882

.github/workflows/remove-canceled-netlify-builds.yml

• actions/github-script v7@60a0d83039c74a4aee543508d2ffcb1c3799cdea

.github/workflows/rich-codex.yml

• actions/checkout v4@11bd71901bbe5b1630ceea73d27597364c9af683
• actions/setup-python v5@0b93645e9fea7318ecaed2b359559ac225c90a2b
• nf-core/setup-nextflow v2@561fcfc7146dcb12e3871909b635ab092a781f34
• nf-core/setup-nf-test v1
• ewels/rich-codex v1@8ce988cc253c240a3027ba58e33e47640935dd8b

pre-commit

.pre-commit-config.yaml

• pre-commit/mirrors-prettier v3.1.0

regex

.pre-commit-config.yaml

• `repo: https://github.com/pre-commit/mirrors-prettier
  rev: 'v3.1.0'
  hooks:
  • id: prettier

    NOTE https://github.com/pre-commit/pre-commit/issues/3133

    additional_dependencies:
    • prettier 3.2.5`

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