dont hardcode path to gubbins

nickjcroucher · May 8, 2012 · 5b86da5 · 5b86da5
1 parent aaa4ed9
commit 5b86da5
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,7 @@
 *.o
 gubbins
 tests/run_all_tests
+src/run_all_tests
 .DS_Store
 Makefile
 src/.deps

diff --git a/run_gubbins.py b/run_gubbins.py
@@ -16,7 +16,7 @@
 RAXML_EXEC = 'raxmlHPC -f d  -m GTRGAMMA'
 FASTTREE_EXEC = 'FastTree'
 FASTTREE_PARAMS = '-gtr -gamma -nt'
-GUBBINS_EXEC = './src/gubbins'
+GUBBINS_EXEC = 'gubbins'
 
 def robinson_foulds_distance(input_tree_name,output_tree_name):
   input_tree  = dendropy.Tree.get_from_path(input_tree_name, 'newick')