Merge pull request #11 from andrewjpage/use_get_opt_long

Use get opt long
nickjcroucher · Apr 25, 2012 · 8f80df2 · 8f80df2
2 parents dce8bfa + a95b71a
commit 8f80df2
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diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,7 @@
 *.o
 gubbins
 tests/run_all_tests
+.DS_Store
+Makefile
+src/.deps
+autom4te.cache/*
diff --git a/AUTHORS b/AUTHORS
@@ -0,0 +1 @@
+Andrew J. Page
diff --git a/ChangeLog b/ChangeLog
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+2012-4-24 Andrew J. Page <ap13@sanger.ac.uk>
+* Initial beta testing version
diff --git a/INSTALL b/INSTALL
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+./configure
+make
+make install
+
+The main executable should be in ./src/gubbins
+
+
+These applications must be in your PATH:
+FastTree http://www.microbesonline.org/fasttree/
+RAxML (the full version) http://sco.h-its.org/exelixis/software.html
+
+These Python packages must be in your PYTHONPATH:
+Biopython (>=1.59)
+DendroPy (>=3.11.1)
diff --git a/Makefile.am b/Makefile.am
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+SUBDIRS=src
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		2012-4-24 Andrew J. Page <ap13@sanger.ac.uk>
		* Initial beta testing version