diff --git a/Dockerfile b/Dockerfile index 772ecfbb..00b5a8ef 100644 --- a/Dockerfile +++ b/Dockerfile @@ -31,7 +31,9 @@ RUN pip3 install certifi \ && pip3 install nose \ && pip3 install pillow \ && pip3 install dendropy \ - && pip3 install biopython + && pip3 install biopython \ + && pip3 install functools \ + && pip3 install multiprocess # Install RAxML ARG raxml_version='8.2.12' @@ -59,6 +61,22 @@ RUN curl -L https://github.com/Cibiv/IQ-TREE/releases/download/v${iqtree_version && cp iqtree-${iqtree_version}-Linux/bin/iqtree /usr/local/bin \ && rm -rf iqtree-${iqtree_version}-Linux +# Install RAxML-NG +ARG raxmlng_version='1.0.1' +RUN curl https://github.com/amkozlov/raxml-ng/releases/download/${raxmlng_version}/raxml-ng_v${raxmlng_version}_linux_x86_64.zip \ + && unzip raxml-ng_v${raxmlng_version}_linux_x86_64.zip \ + && cp raxml-ng /usr/local/bin + +# Install RapidNJ +ARG rapidnj_version=2.3.2 +RUN curl https://github.com/johnlees/rapidnj/archive/${rapidnj_version}.zip \ + && unzip ${rapidnj_version}.zip \ + && cd rapidnj-${rapidnj_version} \ + && make \ + && cp bin/rapidnj /usr/local/bin \ + && cd .. \ + && rm -rf rapidnj-${rapidnj_version} + # Install Gubbins ENV BUILD_DIR /opt/gubbins RUN mkdir -p ${BUILD_DIR}