DESCRIPTION

Package: progressionEstimation
Type: Package
Title: R package for the estimation of microbial progression rates 
Version: 1.0.1
Author: c(person(given = "Alessandra",
               family = "Løchen",
               role = c("ctb")),
          person(given = "James",
               family = "Truscott",
               role = c("ctb")),
          person(given = "Nicholas",
               family = "Croucher",
               email = "n.croucher@imperial.ac.uk",
               role = c("aut", "cre"))
          )
Maintainer: Nicholas Croucher <n.croucher@imperial.ac.uk>
Description: This package uses Bayesian models implemented in stan to estimate the rates at which microbes progress from carriage to disease using case and carrier data.
License: GPL-3.0
URL: https://github.com/nickjcroucher/progressionEstimation
Encoding: UTF-8
LazyData: true
Depends: 
    R (>= 3.4.0)
Imports:
    bridgesampling (>= 1.0),
    kableExtra (>= 1.2.1),
    loo (>= 2.4.1),
    magrittr (>= 2.0),
    methods,
    Rcpp (>= 0.12.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.21.2),
    rstantools (>= 2.1.1),
    tidyverse (>= 1.3),
    xlsx (>= 0.6.5),
    cowplot (>= 1.1.1),
    gtools (>= 3.9),
    ggplot2,
    dplyr,
    rlang,
    stringr
Suggests: 
    knitr,
    rmarkdown,
    metafor (>= 3.0),
    ggpubr (>= 0.4),
    testthat (>= 3.0.0),
    roxygen2
VignetteBuilder: knitr
RoxygenNote: 7.1.1
Biarch: true
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
Config/testthat/edition: 3