From 9201c245e105e392327fcd4959bc6515eb7445bf Mon Sep 17 00:00:00 2001
From: bpinsard <basile.pinsard@gmail.com>
Date: Mon, 15 Jan 2024 14:06:48 -0500
Subject: [PATCH] fix circleci job

---
 .circleci/config.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.circleci/config.yml b/.circleci/config.yml
index 0db99820f..54ca7e053 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -555,6 +555,8 @@ jobs:
           name: Re-run fMRIPrep on single run of task data, without T1w in BIDS
           no_output_timeout: 2h
           command: |
+            mkdir -p /tmp/${DATASET}/fmriprep-partial_noT1w
+            chmod a+rwX /tmp/${DATASET}/fmriprep-partial_noT1w
             rm -Rf /tmp/data/${DATASET}/sub-01/anat
             FASTRACK_ARG="--derivatives anat=/tmp/${DATASET}/smriprep"
             fmriprep-docker -i nipreps/fmriprep:latest \
@@ -564,8 +566,8 @@ jobs:
                 /tmp/data/${DATASET} /tmp/${DATASET}/fmriprep-partial-noT1w participant \
                 --fs-subjects-dir /tmp/${DATASET}/freesurfer \
                 ${FASTRACK_ARG} \
-                --sloppy --write-graph --use-syn-sdc --mem-mb 14336 \
-                --output-spaces MNI152NLin2009cAsym fsaverage5 fsnative MNI152NLin6Asym anat \
+                --sloppy --write-graph --mem-mb 14336 \
+                --output-spaces MNI152NLin2009cAsym fsaverage5 \
                 --nthreads 4 --cifti-output --project-goodvoxels -vv
       - run:
           name: Clean working directory