diff --git a/mriqc/workflows/anatomical.py b/mriqc/workflows/anatomical.py index ca75ea758..4c3e8bcf8 100644 --- a/mriqc/workflows/anatomical.py +++ b/mriqc/workflows/anatomical.py @@ -382,7 +382,9 @@ def compute_iqms(name="ComputeIQMs"): ) # Extract metadata - meta = pe.Node(ReadSidecarJSON(), name="metadata") + meta = pe.Node(ReadSidecarJSON( + index_db=config.execution.bids_database_dir + ), name="metadata") # Add provenance addprov = pe.Node(AddProvenance(), name="provenance", run_without_submitting=True) diff --git a/mriqc/workflows/functional.py b/mriqc/workflows/functional.py index ecca3d608..23392104c 100644 --- a/mriqc/workflows/functional.py +++ b/mriqc/workflows/functional.py @@ -364,7 +364,9 @@ def compute_iqms(name="ComputeIQMs"): # fmt: on # Add metadata - meta = pe.Node(ReadSidecarJSON(), name="metadata") + meta = pe.Node(ReadSidecarJSON( + index_db=config.execution.bids_database_dir + ), name="metadata") addprov = pe.Node( AddProvenance(modality="bold"), diff --git a/pyproject.toml b/pyproject.toml index a763ac476..3794ef2f9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,7 +31,7 @@ dependencies = [ "nipype ~= 1.4", "nireports >= 23.0", "nitransforms >= 21.0.1", - "niworkflows >= 1.7.6", + "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master", "numpy ~=1.20", "pandas ~=1.0", "pybids >= 0.15.6",