diff --git a/niworkflows/reports/default.yml b/niworkflows/reports/default.yml index 51221017978..86bd3bc1a24 100644 --- a/niworkflows/reports/default.yml +++ b/niworkflows/reports/default.yml @@ -26,12 +26,51 @@ sections: caption: Surfaces (white and pial) reconstructed with FreeSurfer (recon-all) overlaid on the participant's T1w template. subtitle: Surface reconstruction -- name: Fieldmaps - ordering: session + +- name: B0 field mapping + ordering: session,acquisition,reconstruction,direction,run,fmapid reportlets: - - bids: {datatype: figures, desc: brain, suffix: fieldmap} - caption: Brain extraction of the magnitude image from the fieldmap. - subtitle: Skull stripped magnitude image + - bids: {datatype: figures, desc: mapped, suffix: fieldmap} + caption: Inhomogeneities of the B0 field introduce (oftentimes severe) spatial distortions + along the phase-encoding direction of the image. Some scanners produce a B0 + mapping of the field, using Spiral Echo Imaging (SEI) or postprocessing a "phase-difference" + acquisition. The plot below shows an anatomical "magnitude" reference and the corresponding + fieldmap. + description: Hover over the panels with the mouse pointer to also visualize the intensity of the + field inhomogeneity in Hertz. + static: false + subtitle: "Preprocessed B0 mapping acquisition" + - bids: {datatype: figures, desc: phasediff, suffix: fieldmap} + caption: Inhomogeneities of the B0 field introduce (oftentimes severe) spatial distortions + along the phase-encoding direction of the image. A Gradient-Recalled Echo (GRE) scheme for the + mapping of the B0 inhomogeneities by subtracting the phase maps obtained at + two subsequent echoes. The plot below shows an anatomical "magnitude" reference and the corresponding + fieldmap. + description: Hover over the panels with the mouse pointer to also visualize the intensity of the + field inhomogeneity in Hertz. + static: false + subtitle: "Preprocessed mapping of phase-difference acquisition" + - bids: {datatype: figures, desc: pepolar, suffix: fieldmap} + caption: Inhomogeneities of the B0 field introduce (oftentimes severe) spatial distortions + along the phase-encoding direction of the image. Utilizing two or more images with different + phase-encoding polarities (PEPolar) or directions, it is possible to estimate the inhomogeneity + of the field. The plot below shows a reference EPI (echo-planar imaging) volume generated + using two or more EPI images with varying phase-encoding blips. + description: Hover on the panels with the mouse pointer to also visualize the intensity of the + inhomogeneity of the field in Hertz. + static: false + subtitle: "Preprocessed estimation with varying Phase-Endocing (PE) blips" + - bids: {datatype: figures, desc: anat, suffix: fieldmap} + caption: Inhomogeneities of the B0 field introduce (oftentimes severe) spatial distortions + along the phase-encoding direction of the image. Utilizing an anatomically-correct acquisition + (for instance, T1w or T2w), it is possible to estimate the inhomogeneity of the field by means of nonlinear + registration. The plot below shows a reference EPI (echo-planar imaging) volume generated + using two or more EPI images with the same PE encoding, after alignment to the anatomical scan. + description: Hover on the panels with the mouse pointer to also visualize the intensity of the + inhomogeneity of the field in Hertz. + static: false + subtitle: "Preprocessed estimation by nonlinear registration to an anatomical scan (“fieldmap-less”)" + - name: Functional ordering: session,task,acquisition,ceagent,reconstruction,direction,run,echo reportlets: