_pkgdown.yml

articles:
- title: onmsR Vignettes
  navbar: ~
  contents:
  - Introduction
  - Overview
  - Calcofi
  - Erddap
  - Marine
  - Reporting
  - Utilities

reference:
- title: "Data: Fisheries (CalCOFI)"
  desc: Generate figures for [CalCOFI](http://calcofi.org) dataset.
  contents:
  - calcofi_map
  - calcofi_plot
- title: "Data: Oceanography (ERDDAP)"
  desc:  Extract, calculate and plot oceanographic data.
  contents:
  - calculate_SST_anomaly
  - calculate_statistics
  - get_dates
  - ply2erddap
  - plot_metric_timeseries
  - plot_SST_anomaly
- title: "Data: Rocky intertidal (MARINe)"
  desc:  Produce interactive maps and plots.
  contents:
  - starts_with("rocky")
- title: Reporting functions
  desc: Render html for R markdown files that form the modal windows.
  contents:
  - generate_html_4_rmd
  - get_figure_info
  - get_modal_info
  - md_caption
  - render_all_rmd
  - render_figure
  - glossarize_md
  - insert_tooltip
  - rmd2html
  - create_website
- title: Sanctuaries utilities
  desc:  Utility functions for Sanctuary regions.
  contents:
  - get_nms_polygons
- title: Other
  desc: Other functions not defined by concepts above
  contents:
  - lacks_concepts(c("utility", "calcofi", "erddap", "rocky"))