From 2247e52ccfc90330f960673318385e0fbd94619c Mon Sep 17 00:00:00 2001
From: Koji Noshita <noshita@morphometrics.jp>
Date: Sun, 10 Mar 2024 22:12:12 +0900
Subject: [PATCH 1/2] =?UTF-8?q?test:=20=F0=9F=9A=A8=20add=20tests=20for=20?=
 =?UTF-8?q?input/output=20shapes?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .../tests/test_Procrustes_analysis.py         | 28 +++++++++++++++++++
 .../tests/test_elliptic_Fourier_analysis.py   | 20 ++++++++-----
 2 files changed, 41 insertions(+), 7 deletions(-)
 create mode 100644 ktch/landmark/tests/test_Procrustes_analysis.py

diff --git a/ktch/landmark/tests/test_Procrustes_analysis.py b/ktch/landmark/tests/test_Procrustes_analysis.py
new file mode 100644
index 0000000..4e65814
--- /dev/null
+++ b/ktch/landmark/tests/test_Procrustes_analysis.py
@@ -0,0 +1,28 @@
+import numpy as np
+import pytest
+from numpy.testing import assert_array_almost_equal
+
+from ktch.datasets import load_landmark_mosquito_wings
+from ktch.landmark import GeneralizedProcrustesAnalysis, centroid_size
+
+data_landmark_mosquito_wings = load_landmark_mosquito_wings(as_frame=True)
+data_landmark_mosquito_wings.coords
+
+X = data_landmark_mosquito_wings.coords.to_numpy().reshape(-1, 18 * 2)
+
+
+def test_gpa_shape():
+    gpa = GeneralizedProcrustesAnalysis()
+    gpa.fit_transform(X)
+    X_transformed = gpa.fit_transform(X)
+
+    assert X.shape == X_transformed.shape
+
+
+@pytest.mark.parametrize("n_dim", [2, 3])
+def test_centroid_size(n_dim):
+    x = np.random.uniform(0, 100, (10, n_dim))
+    cs_r = np.sqrt(np.sum((x - x.mean(axis=0)) ** 2))
+    cs_t = centroid_size(x)
+
+    assert_array_almost_equal(cs_r, cs_t)
diff --git a/ktch/outline/tests/test_elliptic_Fourier_analysis.py b/ktch/outline/tests/test_elliptic_Fourier_analysis.py
index 1f01337..3dbd9bc 100644
--- a/ktch/outline/tests/test_elliptic_Fourier_analysis.py
+++ b/ktch/outline/tests/test_elliptic_Fourier_analysis.py
@@ -1,13 +1,8 @@
 import numpy as np
-
-from numpy.testing import assert_array_almost_equal
 import pytest
+from numpy.testing import assert_array_almost_equal
 
-from ktch.datasets import (
-    load_outline_bottles,
-    load_coefficient_bottles,
-    convert_coords_df_to_list,
-)
+from ktch.datasets import load_coefficient_bottles, load_outline_bottles
 from ktch.outline import EllipticFourierAnalysis
 
 bottles = load_outline_bottles()
@@ -31,6 +26,17 @@ def test_data_prep_align():
         assert_array_almost_equal(x_frame, x_list)
 
 
+@pytest.mark.parametrize("norm", [False, True])
+def test_efa_shape(norm):
+    n_harmonics = 6
+
+    X = bottles.coords
+    efa = EllipticFourierAnalysis(n_harmonics=n_harmonics)
+    X_transformed = efa.fit_transform(X, norm=norm)
+
+    assert X_transformed.shape == (len(X), 4 * (n_harmonics + 1))
+
+
 @pytest.mark.parametrize("norm", [False, True])
 @pytest.mark.parametrize("set_output", [None, "pandas"])
 def test_efa(norm, set_output):

From b0d6150bc1f7117fffaec04c45b8293edca203b6 Mon Sep 17 00:00:00 2001
From: Koji Noshita <noshita@morphometrics.jp>
Date: Sun, 10 Mar 2024 22:22:29 +0900
Subject: [PATCH 2/2] =?UTF-8?q?release:=20=F0=9F=9A=80=20v0.4.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 environment.yml | 2 +-
 pyproject.toml  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/environment.yml b/environment.yml
index 4441624..2eaf011 100644
--- a/environment.yml
+++ b/environment.yml
@@ -1,7 +1,7 @@
 ###############################################################################
 # NOTE: This file has been auto-generated by poetry2conda
 #       poetry2conda version = 0.3.0
-#       date: Fri Feb  9 00:53:13 2024
+#       date: Sun Mar 10 22:20:31 2024
 ###############################################################################
 # If you want to change the contents of this file, you should probably change
 # the pyproject.toml file and then use poetry2conda again to update this file.
diff --git a/pyproject.toml b/pyproject.toml
index 39a9ca3..5a97fec 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -20,7 +20,7 @@ license = "Apache-2.0"
 name = "ktch"
 readme = "README.md"
 repository = "https://github.com/noshita/ktch"
-version = "0.3.2"
+version = "0.4.0"
 
 [tool.poetry.dependencies]
 numpy = ">=1.22"