R

Contents:

• boostrap.R: plot bootstrapped results across all models, e.g., distributions, calculate confidence intervals for
• compareClassification.R: inspect cross-validation results of selected models
• demographics.R: patient demographics in each dataset
• label_association.R imaging traits and demographics association testing
• nn_gsea.R gene set enrichment analysis (GSEA)
• plot_gsea.R GSEA heatmaps
• plot_performance.R plot figs and get table data related to model performance
• plot_perturbations.R gene masking heatmaps