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add modifications to combine outputs when running for subregions #737

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ManuelaRunge opened this issue Apr 28, 2021 · 1 comment

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ManuelaRunge commented Apr 28, 2021

either add region name to trajectories filename to move into a combined exp_name, for which postprocessing can run as usual
or combine outcome csvs per region after postprocessing, recalculate all IL

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ManuelaRunge commented Apr 29, 2021 •

edited

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initial script here #740
further modifications include

rename experiment name in sh files, test for multiple regions in one experiment,
submit Rt and overflow process for IL and add to deliverable csvs (currently using average Rt or overflow percentage)
re-generate plots that show all regions + Il, (needs modification of get_group_names)

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