1 News

#News about iRAP.

• 19/03/2015 - Moving to GitHub.
• 15/03/2015 - Release 0.6.1. Several fixes and initial support for DESeq2.
• 03/03/2015 - Release 0.6.0. New: iRAP docker images and wrappers; options to add read group ids and arbitrary sam headers to BAM files; BAM statistics reports (faster and more detailed). Upgraded versions of several tools and packages.
• 20/10/2014 - Release 0.5.0. New: support for MapSplice and NURD; initial input files (FASTQ/BAM) can now be distributed across different sub-folders; support for strand-specific RNA-seq data (<libname>_strand parameter); upgraded versions of many tools (TopHat, Cufflinks, Bowtie, ...).
• 14/06/2014 - Release 0.4.2. Several fixes and improvements (mostly in the report generation).
• 06/06/2014 - Manuscript describing iRAP available in [http://biorxiv.org/content/early/2014/06/06/005991 bioRxiv].
• 02/05/2014 - Release 0.4.0
• Include support for gene set enrichment (GSE) analysis.
• Web report generation for all stages of the analysis (QC, mapping, quantification, DE and GSE) - in beta status.
• Improved installation script and support for manual (semi-automatic) installation.
• 08/01/2014 - Release 0.3.3
• Several fixes and improvements.
• Upgrade of 3rd party tools to more recent versions.
• 26/11/2013 - Release 0.3.0
• Several fixes and improvements.
• BAM support: accept BAM files as input (as an alternative for FASTQ files)
• RPKMs: generate tsv files with RPKMs per feature/library.
• 21/08/2013 - iRAP is now online.