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storage: rename replica application files and objects
This isn't being squashed into the previous diff to keep the diffs there more clear. The renames include: Types: `replicaApplier` -> `replicaStateMachine` `cmdAppCtx` -> `replicatedCmd` `cmdAppCtxBuf` -> `replicatedCmdBuf` Files: `replica_application_impl.go` -> `replica_application_state_machine.go` `cmd_app_ctx.go` -> `replica_application_cmd.go` `cmd_app_ctx_buf.go` -> `replica_application_cmd_buf.go` Release note: None
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