From 6cc931e8ea93c56d9a808a795539a9d62b4468b7 Mon Sep 17 00:00:00 2001 From: ewabergmann Date: Sun, 17 Jun 2018 19:39:24 +0100 Subject: [PATCH] minor changes to reflect Python 3 compatibility --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 286dde1..5c885b6 100644 --- a/README.md +++ b/README.md @@ -4,12 +4,12 @@ Conpair: concordance and contamination estimator for tumor–normal pairs Conpair is a fast and robust method dedicated for human tumor-normal studies to perform concordance verification (= samples coming from the same individual), as well as cross-individual contamination level estimation in whole-genome and whole-exome sequencing experiments. Importantly, our method of estimating contamination in the tumor samples is not affected by copy number changes and is able to detect contamination levels as low as 0.1%. * Version: 0.1 (more options to be added in the future release) -* Author: Ewa A Bergmann, [New York Genome Center](https://www.nygenome.org) +* Author: Ewa A Bergmann * Contact: ewa.a.bergmann@gmail.com **Required input files:** two bam files (tumor, normal) -**Required software:** GATK 2.3 or later, python 2.7, scipy, numpy, java +**Required software:** GATK 2.3 or later, python 2.7 or higher, scipy, numpy, java **Required data:** Human genome file (GRCh37) @@ -23,7 +23,7 @@ To create these files please follow: http://gatkforums.broadinstitute.org/gatk/d **Dependencies:** -* python 2.7 : [www.python.org](https://www.python.org/) +* python 2.7 or higher : [www.python.org](https://www.python.org/) * numpy 1.7.0 or higher : [www.numpy.org](http://www.numpy.org/) * scipy 0.14.0 or higher : [www.scipy.org](http://www.scipy.org/) * GATK 2.3 or higher : [www.broadinstitute.org/gatk/download](http://www.broadinstitute.org/gatk/download/)