From 424ec38a1a7282bb2061ef78384446a043fe1535 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Fri, 1 Apr 2022 12:30:44 +0300 Subject: [PATCH 1/8] Updates to release --- docs/odk-workflows/RepositoryFileStructure.md | 4 +- imports/cl_import.owl | 1057 +++- src/ontology/Makefile | 13 +- src/ontology/uberon-edit.obo | 188 +- src/ontology/uberon-odk.yaml | 5 +- src/ontology/uberon.Makefile | 163 +- uberon.obo | 5400 +++++------------ 7 files changed, 2597 insertions(+), 4233 deletions(-) diff --git a/docs/odk-workflows/RepositoryFileStructure.md b/docs/odk-workflows/RepositoryFileStructure.md index 73e4dee943..1ed5561468 100644 --- a/docs/odk-workflows/RepositoryFileStructure.md +++ b/docs/odk-workflows/RepositoryFileStructure.md @@ -25,11 +25,11 @@ These are the current imports in UBERON | chebi | http://purl.obolibrary.org/obo/chebi.owl | None | | pato | http://purl.obolibrary.org/obo/pato.owl | None | | bfo | http://purl.obolibrary.org/obo/bfo.owl | None | -| ncbitaxon | http://purl.obolibrary.org/obo/ncbitaxon.owl | None | +| ncbitaxon | http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl | None | | nbo | http://purl.obolibrary.org/obo/nbo.owl | None | | ceph | http://purl.obolibrary.org/obo/ceph.owl | None | | cteno | http://purl.obolibrary.org/obo/cteno.owl | None | -| ehdaa2 | http://purl.obolibrary.org/obo/ehdaa2.owl | None | +| ehdaa2 | https://raw.githubusercontent.com/cmungall/human-developmental-anatomy-ontology/uberon/src/ontology/ehdaa2-edit.obo | None | | emapa | http://purl.obolibrary.org/obo/emapa.owl | None | | fbbt | http://purl.obolibrary.org/obo/fbbt.owl | None | | fbdv | http://purl.obolibrary.org/obo/fbdv.owl | None | diff --git a/imports/cl_import.owl b/imports/cl_import.owl index 52d0966ef5..1dee496648 100644 --- a/imports/cl_import.owl +++ b/imports/cl_import.owl @@ -4,20 +4,22 @@ xmlns:cl="http://purl.obolibrary.org/obo/cl#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:cl1="http://purl.obolibrary.org/obo/cl#3" - xmlns:cl2="http://purl.obolibrary.org/obo/cl#1" + xmlns:cl2="http://purl.obolibrary.org/obo/cl#2" + xmlns:cl3="http://purl.obolibrary.org/obo/cl#1" xmlns:obo="http://purl.obolibrary.org/obo/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/" xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + - 2021-11-25 + 2022-02-16 Alexander Diehl Ceri van Slyke Chris Mungall @@ -76,7 +78,6 @@ - IAO:0000116 uberon editor_note @@ -117,12 +118,6 @@ - - - - - - @@ -154,8 +149,8 @@ Chris Mungall - ?X DisjointWith RO_0002162 some ?Y Class: <http://www.w3.org/2002/07/owl#Nothing> EquivalentTo: ?X and (RO_0002162 some ?Y) + Class: ?X DisjointWith: RO_0002162 some ?Y RO:0002161 uberon never_in_taxon @@ -205,19 +200,6 @@ - - - - depicted:by - uberon - depicted_by - true - depicted_by - depicted by - - - - @@ -647,15 +629,6 @@ - - - - - - - - - @@ -728,6 +701,15 @@ + + + + + + + + + @@ -804,6 +786,12 @@ + + + + + + @@ -937,24 +925,12 @@ - - - - - - - - - - - - @@ -979,7 +955,6 @@ http://www.w3.org/2000/01/rdf-schema#seeAlso - seeAlso uberon seeAlso true @@ -995,6 +970,19 @@ + + + + http://xmlns.com/foaf/0.1/depicted_by + uberon + depicted_by + true + depicted_by + depicted by + + + + - - A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid. - BTO:0003652 + A cell located in the synovial joint. CALOHA:TS-0995 - FMA:66786 synoviocyte - hyaluronic acid secreting cell cell CL:0000214 synovial cell @@ -5186,6 +5166,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u + cell CL:0000241 @@ -6130,9 +6111,10 @@ Covers cells actively being cultured or stored in a quiescent state for future u A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea. + tears secreting cell cell CL:0000315 - tears secreting cell + tear secreting cell @@ -6287,7 +6269,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u - cell CL:0000327 @@ -6616,7 +6597,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u - cell CL:0000350 @@ -6732,7 +6712,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u - A smooth muscle cell assocatiated with the vasculature. + A smooth muscle cell associated with the vasculature. VSMC vascular smooth muscle cell cell @@ -6983,9 +6963,10 @@ Covers cells actively being cultured or stored in a quiescent state for future u + support cell (sensu Nematoda and Protostomia) cell CL:0000378 - support cell (sensu Nematoda and Protostomia) + supporting cell (sensu Nematoda and Protostomia) @@ -7773,7 +7754,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u - A peptide hormone cell that secretes prolactin. cell @@ -9210,7 +9190,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system. - BTO:0000938 CALOHA:TS-0683 FBbt:00005106 @@ -9253,6 +9232,18 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + @@ -9351,6 +9342,18 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + @@ -9384,6 +9387,12 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + A nucleated immature erythrocyte, having cytoplasm generally similar to that of the earlier proerythroblast but sometimes even more basophilic, and usually regular in outline. The nucleus is still relatively large, but the chromatin strands are thicker and more deeply staining, giving a coarser appearance; the nucleoli have disappeared. This cell is CD71-positive and lacks hematopoeitic lineage markers. FMA:83505 basophilic normoblast @@ -9401,6 +9410,12 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + @@ -9437,6 +9452,12 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + @@ -9609,6 +9630,12 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + @@ -9633,14 +9660,13 @@ Covers cells actively being cultured or stored in a quiescent state for future u + Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. They lack large axons. BTO:0004044 - FBbt:00005127 FMA:67766 amacrine neuron cell CL:0000561 - Not clear if this term overlaps with retinal bipolar neuron (CL:0000748). amacrine cell @@ -9965,6 +9991,12 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, production of primary granules is complete and neutrophil-specific granules has started. No nucleolus is present. This cell type is CD13-positive, CD16-negative, integrin alpha-M-positive, CD15-positive, CD33-positive, CD24-positive, C/EBP-a-positive, C/EBPe-positive, PU.1-positive, lactotransferrin-positive, myeloperoxidase-positive and NGAL-positive. BTO:0003455 FMA:83540 @@ -9996,6 +10028,18 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + + + + + + + @@ -10569,9 +10613,10 @@ Covers cells actively being cultured or stored in a quiescent state for future u + support cell (sensu Nematoda) cell CL:0000619 - support cell (sensu Nematoda) + supporting cell (sensu Nematoda) @@ -10679,6 +10724,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u + Granule cell that is part of the olfactory bulb. cell CL:0000626 @@ -10730,9 +10776,10 @@ Covers cells actively being cultured or stored in a quiescent state for future u A cell whose primary function is to support other cell types. BTO:0002315 + supportive cell cell CL:0000630 - supportive cell + supporting cell @@ -10753,7 +10800,6 @@ Covers cells actively being cultured or stored in a quiescent state for future u - A cell that is found in the perisinusoidal space of the liver that is capable of multiple roles including storage of retinol, presentation of antigen to T cells (including CD1d-restricted NKT cells), and upon activation, production of extracellular matrix components that can contribute to liver fibrosis. This activated state has a myofibroblast-like phenotype, though it's not clear in the literature if this is terminally differentiated. This cell type comprises approximately 8-15% of total cells in the liver. BTO:0002741 @@ -12017,11 +12063,13 @@ radial glial cells acting as neural progenitors throughout life. - - A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons. + OBSOLETE. A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons. + CL:0008037 cell CL:0000717 - fusimotor neuron + Term merged into CL:0008037. Refer to https://github.com/obophenotype/cell-ontology/issues/1364 + obsolete fusimotor neuron + true @@ -12756,7 +12804,24 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + + + + + + @@ -12778,6 +12843,12 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + @@ -12796,7 +12867,24 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + + + + + + @@ -12836,7 +12924,24 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + + + + + + @@ -12859,6 +12964,18 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + @@ -12876,7 +12993,24 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + + + + + + @@ -12921,7 +13055,24 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + + + + + + @@ -13114,6 +13265,12 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + @@ -14159,6 +14316,18 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + @@ -14180,6 +14349,18 @@ radial glial cells acting as neural progenitors throughout life. + + + + + + + + + + + + @@ -14480,9 +14661,10 @@ radial glial cells acting as neural progenitors throughout life. Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells. + neuromast support cell cell CL:0000852 - neuromast support cell + neuromast supporting cell @@ -14494,12 +14676,13 @@ radial glial cells acting as neural progenitors throughout life. Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons. FMA:62302 + olfactory epithelial support cell olfactory sustentacular cell supporting cell of olfactory epithelium sustentaculocyte of olfactory epithelium cell CL:0000853 - olfactory epithelial support cell + olfactory epithelial supporting cell @@ -17633,6 +17816,8 @@ radial glial cells acting as neural progenitors throughout life. + + Granule cell that is part of the cerebral cortex. cell CL:0001032 @@ -17645,7 +17830,6 @@ radial glial cells acting as neural progenitors throughout life. - Granule cell that is part of the hippocampus. cell CL:0001033 @@ -18071,6 +18255,7 @@ radial glial cells acting as neural progenitors throughout life. + @@ -18379,6 +18564,7 @@ radial glial cells acting as neural progenitors throughout life. + @@ -21688,7 +21874,6 @@ radial glial cells acting as neural progenitors throughout life. - A cell that is a specialized type of pericyte providing structural support for the capillary loops of kidney. A flat, elongated cell with extensive fine cytoplasmic processes found outside the kidney glomerulus near the macula densa and bound laterally by afferent and efferent arterioles. Being phagocytic, this cell participates in the continuous turnover of the basal lamina by removing its outer portion containing residues of filtration, while the lamina is renewed on its inner surface by the endothelial cells. tmeehan @@ -21828,9 +22013,10 @@ radial glial cells acting as neural progenitors throughout life. 2010-08-25T03:41:30Z CL:1000401 FMA:62954 + mucus neck cell of gastric gland cell CL:0002181 - mucus neck cell of gastric gland + mucous neck cell of gastric gland @@ -22147,10 +22333,13 @@ radial glial cells acting as neural progenitors throughout life. - - A renal intercalated cell that secretes base and reabsorbs acid in the coritcal collecting duct to mantain acid/base balance. + + + A renal intercalated cell that secretes base and reabsorbs acid in the distal segments of the kidney tubule to maintain acid/base balance. tmeehan 2010-09-02T01:43:55Z + type B intercalated cell + type B-IC cell CL:0002201 renal beta-intercalated cell @@ -23856,12 +24045,17 @@ radial glial cells acting as neural progenitors throughout life. - A synovial cell type that resembles fibroblasts, has abundant granular endoplasmic reticulum but contains fewer vacuoles and vesicles. This cell type secretes glycoproteins and hyaluronic acid. + + A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles. tmeehan 2010-09-13T03:39:14Z + BTO:0003652 FMA:66788 + fibroblast-like synoviocyte + synovial fibroblast cell CL:0002301 + Type B synovial cells play a key role in the pathogenesis of chronic inflammatory diseases, such as rheumatoid arthritis, and are essential for the maintenance of normal joint functions. Fibroblast-like synoviocytes from different joints have different properties, which may contribute to the characteristic pattern of joint involvement in different types of arthritis. type B synovial cell @@ -23871,6 +24065,7 @@ radial glial cells acting as neural progenitors throughout life. + A synovial cell that is macrophage-like, characterized by surface ruffles or lamellipodia, plasma membrane invaginations and associated micropinocytotic vesicles, Golgi apparatus and little granular endoplasmic reticulum. tmeehan 2010-09-13T03:39:17Z @@ -23878,6 +24073,7 @@ radial glial cells acting as neural progenitors throughout life. type A synoviocyte cell CL:0002302 + Type A cells are usually round and located in the upper part of the synovial intima. type A synovial cell @@ -24157,7 +24353,7 @@ radial glial cells acting as neural progenitors throughout life. FMA:86712 cell CL:0002318 - periperhal blood mesothelial cell + peripheral blood mesothelial cell @@ -24284,6 +24480,8 @@ radial glial cells acting as neural progenitors throughout life. FMA:79866 epithelial cell of lactiferous gland luminal cell of alveolus of lactiferous gland + mammary alveolar epithelial cell + mammary gland alveolar epithelial cell cell CL:0002325 mammary alveolar cell @@ -24757,7 +24955,6 @@ radial glial cells acting as neural progenitors throughout life. - A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive. tmeehan @@ -26057,6 +26254,7 @@ radial glial cells acting as neural progenitors throughout life. tmeehan 2010-10-21T02:29:19Z T.4int8+.Th + T_4int8+_Th cell CL:0002430 CD4-intermediate, CD8-positive double-positive thymocyte @@ -26077,7 +26275,8 @@ radial glial cells acting as neural progenitors throughout life. A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD8 co-receptor. tmeehan 2010-10-21T02:29:23Z - T.4int8+.th + T.4+8int.Th + T_4+8int_Th cell CL:0002431 CD4-positive, CD8-intermediate double-positive thymocyte @@ -26444,18 +26643,23 @@ radial glial cells acting as neural progenitors throughout life. - - The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons. + A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons. + http://orcid.org/0000-0002-1773-2692 tmeehan 2010-11-10T02:51:34Z + O-2A/OPC + O2A/OPC + oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell + oligodendrocyte/type-2 astrocyte progenitor cell cell CL:0002453 + This cell type can be purified from optic nerves and other regions of the embryonic, postnatal and adult rat CNS and can be differentiated in vitro to oligodendrocytes and type-2 astrocytes. Some references use the terms 'oligodendrocyte precursor cell' and 'oligodendrocyte type-2 astrocyte (O-2A) progenitor' to refer to the same entity (e.g., PMID:10704434), while others describe an oligodendrocyte type-2 astrocyte (O-2A) progenitor cell as the precurosr to oligodendrocyte- and type-2 astrocyte- progenitor cells (e.g, ISBN:9780702028991). oligodendrocyte precursor cell @@ -27159,6 +27363,7 @@ radial glial cells acting as neural progenitors throughout life. A trophoblast cell that arises in the junctional zone (basal plate) of the placenta. tmeehan 2010-12-07T12:56:56Z + spongiotrophoblast cell CL:0002499 spongiotrophoblast cell @@ -28170,6 +28375,8 @@ radial glial cells acting as neural progenitors throughout life. A melanocyte that appears darker due to content or amount of melanin granules. tmeehan 2011-03-01T05:57:11Z + melanotic melanocyte + melanotic melanophore cell CL:0002566 dark melanocyte @@ -28184,6 +28391,8 @@ radial glial cells acting as neural progenitors throughout life. A melanocyte that appears lighter in color. tmeehan 2011-03-01T05:58:23Z + amelanotic melanocyte + amelanotic melanophore cell CL:0002567 light melanocyte @@ -28227,9 +28436,10 @@ radial glial cells acting as neural progenitors throughout life. A mesenchymal stem cell of adipose tissue. tmeehan 2011-03-01T09:57:17Z + mesenchymal stem cell of adipose cell CL:0002570 - mesenchymal stem cell of adipose + mesenchymal stem cell of adipose tissue @@ -28784,9 +28994,10 @@ radial glial cells acting as neural progenitors throughout life. - - - A CNS neuron of the cerebral cortex. + OBSOLETE. A CNS neuron of the cerebral cortex. + + + CL:0010012 tmeehan 2011-03-06T07:37:08Z BTO:0004102 @@ -28794,7 +29005,8 @@ radial glial cells acting as neural progenitors throughout life. cortical neuron cell CL:0002609 - neuron of cerebral cortex + obsolete neuron of cerebral cortex + true @@ -29440,9 +29652,9 @@ radial glial cells acting as neural progenitors throughout life. A venule endothelial cell that is cubodial, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream. tmeehan 2011-07-08T03:14:10Z + endothelial cell of postcapillary venule of lymph node FMA:67759 HEV cell - endothelial cell of postcapillary venule of lymph node cell CL:0002652 Markers expressed on HEV include: MAdCAM-1,PNAd (sulfated and glycosylated molecules, i.e. GlyCAM-1, CD34, endomucin, nepmucin), ICAM-1, ICAM-2,Fuc-TVII, beta 3GlcNAcT-3, GlcNAc6ST2,CCL21, CCL19, CXCL13, CXCL12, Autotaxin, DARC, angiomodulin, LRHG. @@ -30080,10 +30292,12 @@ radial glial cells acting as neural progenitors throughout life. A cuboidal epithelial cell of the kidney that regulates acid/base balance. + http://orcid.org/0000-0002-1773-2692 FMA:86560 intercalated cell cell CL:0005010 + Intercalated cells are also called “mitochondria-rich cells”, reflecting the high levels of round mitochondria at their apical pole, or in their cytoplasm, a distribution that is quite different from that of other kidney tubule cells, which accumulated mitochondria around the basolateral membrane. These cells also have numerous irregular apical microvilli compared with the surrounding segment-specific cells. Intercalated cells lack a central cilium, at least in the cortex, which also differentiates them from the adjacent principal cells. renal intercalated cell @@ -30092,10 +30306,15 @@ radial glial cells acting as neural progenitors throughout life. - + + + A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance. + type A intercalated cell + type A-IC cell CL:0005011 + Type A intercalated cells are the more abundant type of intercalated cell in the outer stripe of the outer medulla in most mammalian species. renal alpha-intercalated cell @@ -30136,9 +30355,10 @@ radial glial cells acting as neural progenitors throughout life. A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells. + auditory epithelial support cell cell CL:0005014 - auditory epithelial support cell + auditory epithelial supporting cell @@ -30607,10 +30827,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u - - - An epidermal cell with apical microvilli or a single apical projection have synaptic associations with nerve fibres in the epidermis. haendel CL:0007017 @@ -30623,8 +30840,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u - - + Ciliated cell of the embryonic epidermis and functions in embryonic movements. haendel @@ -30666,6 +30882,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u Secretory cell that produces a chemical mixture that triggers antipredator behavior. The substance is released only upon disruption of the epidermis. [Behavior of teleost fishes, second edition, edited by Pitcher, 1992] haendel + alarm substance secreting cell club cell (zebrafish) club cell CL:0007021 @@ -31175,6 +31392,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u FMA:83660 MESH:D009047 SAO:143800623 + fusimotor neuron CL:0008037 gamma motor neuron @@ -31262,12 +31480,12 @@ Covers cells actively being cultured or stored in a quiescent state for future u A giant pyramidal neuron with a soma in layer Vb of the primary motor cortex that sends its axons down the spinal cord via the corticospinal tract, either synapsing directly with alpha motor neurons, or targeting interneurons in the spinal cord. In humans, Betz cells are the largest known in the central nervous system. - https://en.wikipedia.org/w/index.php?title=Betz_cell&oldid=977472330#/media/File:GolgiStainedPyramidalCell.jpg dos 2020-09-28T09:52:58Z pyramidal cell of Betz CL:0008049 Betz cell + https://en.wikipedia.org/w/index.php?title=Betz_cell&oldid=977472330#/media/File:GolgiStainedPyramidalCell.jpg @@ -31724,7 +31942,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u - + A mesothelial cell that is located in a vermiform appendix. http://orcid.org/0000-0002-2825-0621 @@ -32523,6 +32741,134 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + An epithelial cell that is part of an endometrial gland. + 2021-11-30T16:13:30Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010710 + endometrial glandular epithelial cell + CL:0009084 + + epithelial cell of endometrial gland + + + + + + + + + An endothelial cell that is part of a respiratory system lymphatic vessel. + 2021-12-03T14:00:44Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010667 + CL:0009086 + + endothelial cell of respiratory system lymphatic vessel + + + + + + + + + An extravillous trophoblast that is polynuclear. + 2021-12-03T14:37:32Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010712 + fused EVT + CL:0009087 + fused extravillous trophoblast + + + + + + + + + A pericyte cell that is part of a lung. + 2021-12-03T17:13:33Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010669 + lung pericyte cell + pulmonary pericyte + CL:0009089 + + lung pericyte + + + + + + + + + + An endothelial cell that is part of a placenta. + 2021-12-13T13:53:01Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010708 + placental endothelial cell + CL:0009092 + + endothelial cell of placenta + + + + + + + + + A smooth muscle cell that is part of a placenta. + 2021-12-13T13:56:42Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010709 + placental smooth muscle cell + CL:0009093 + + smooth muscle cell of placenta + + + + + + + + + An endothelial cell that is part of a hepatic portal vein. + 2021-12-13T14:01:05Z + http://orcid.org/0000-0002-2825-0621 + portal endothelial cell + EFO:0010704 + CL:0009094 + + endothelial cell of hepatic portal vein + + + + + + + + + An endothelial cell that is part of a uterus. + 2021-12-13T14:39:25Z + http://orcid.org/0000-0002-2825-0621 + EFO:0010711 + uterine endothelial cell + CL:0009095 + + endothelial cell of uterus + + + + @@ -32648,6 +32994,7 @@ Covers cells actively being cultured or stored in a quiescent state for future u + CL:0010010 cerebellar stellate cell @@ -32658,8 +33005,9 @@ Covers cells actively being cultured or stored in a quiescent state for future u - + + A GABAergic interneuron whose soma is located in the cerebral cortex. CL:0010011 cerebral cortex GABAergic interneuron @@ -32671,9 +33019,17 @@ Covers cells actively being cultured or stored in a quiescent state for future u - A neuron that is part_of a cerebral cortex. + A CNS neuron of the cerebral cortex. + + CL:0002609 + BTO:0004102 + FMA:84104 + cortical neuron + neuron of cerebral cortex + cell CL:0010012 cerebral cortex neuron + https://github.com/obophenotype/cell-ontology/issues/1359 @@ -33170,6 +33526,21 @@ Covers cells actively being cultured or stored in a quiescent state for future u + + + + + + Any microvascular endothelial cell that is part of the dermis. + http://orcid.org/0000-0001-5208-3432 + DMEC cell + dermal microvascular endothelium cell + CL:0011030 + dermal microvascular endothelial cell + + + + @@ -33485,6 +33856,137 @@ plexiform layer using GABA. + + + + Cytoplasm that exhibits a characteristic staining and color, pale-pink, with Wright-Giemsa stain. + tmeehan + 2010-05-25T01:36:34Z + cell + CL:0017500 + neutrophillic cytoplasm + + + + + + + + Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin. + http://purl.obolibrary.org/obo/GO_0098537 + tmeehan + 2009-12-22T03:54:43Z + cell + CL:0017501 + Obsoleted because duplicate with GO term. + obsolete lobed nucleus + https://github.com/obophenotype/cell-ontology/issues/734 + true + + + + + + + + Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain. + tmeehan + 2009-12-22T04:23:25Z + eosinophilic + cell + CL:0017502 + acidophilic cytoplasm + + + + + + + + Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions. + tmeehan + 2009-12-22T04:24:54Z + cell + CL:0017503 + basophilic cytoplasm + + + + + + + + Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions. + tmeehan + 2009-12-28T04:25:23Z + cell + CL:0017504 + polychromatophilic cytoplasm + + + + + + + + A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell. + tmeehan + 2009-12-23T10:53:24Z + cell + CL:0017505 + increased nucleus size + + + + + + + + A concave nuclear shape where the nucleus is indented to more than half the distance to the farthest nuclear margin, but in no area is the chromatin condensed to a single filament. + tmeehan + 2009-12-23T02:18:43Z + cell + CL:0017506 + banded nucleus + + + + + + + + A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin. + tmeehan + 2009-12-23T02:31:25Z + cell + CL:0017507 + reniform nucleus + + + + + + + + Heterochromatin that is arranged in a carthwheel pattern. + tmeehan + 2009-12-28T04:28:35Z + cell + CL:0017508 + cartwheel heterochromatin + + + + + + + + CL:0017509 + alobate nucleus + + + + @@ -33609,7 +34111,9 @@ plexiform layer using GABA. An endothelial cell found in the periportal region hepatic sinusoid, near the portal triad. The fenestrae of these cells are larger but fewer in number compared with those of endothelial cells near the centrilobular region of the hepatic sinusoid. 2020-09-09T13:56:47Z + EFO:0010705 periportal LSEC + periportal hepatic sinusoidal endothelial cell CL:0019021 endothelial cell of periportal hepatic sinusoid @@ -33623,6 +34127,8 @@ plexiform layer using GABA. An endothelial cell found in the centrilobular region hepatic sinusoid, near the central vein. The fenestrae of these cells are smaller but more numerous compared with those of endothelial cells near the periportal region of the hepatic sinusoid. 2020-09-10T12:38:29Z + EFO:0010706 + central venous hepatic sinusoidal endothelial cell pericentral LSEC CL:0019022 endothelial cell of pericentral hepatic sinusoid @@ -33715,6 +34221,7 @@ plexiform layer using GABA. + CL:1000022 mesonephric nephron tubule epithelial cell @@ -33799,6 +34306,7 @@ plexiform layer using GABA. + CL:1000090 pronephric nephron tubule epithelial cell @@ -33809,6 +34317,7 @@ plexiform layer using GABA. + CL:1000123 metanephric nephron tubule epithelial cell @@ -35373,7 +35882,6 @@ plexiform layer using GABA. - A type I vestibular sensory cell that is part of the stato-acoustic epithelium. FMA:263186 @@ -35387,7 +35895,6 @@ plexiform layer using GABA. - A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth. FMA:263188 @@ -35401,7 +35908,6 @@ plexiform layer using GABA. - A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth. FMA:263190 @@ -35415,7 +35921,6 @@ plexiform layer using GABA. - A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth. FMA:263192 @@ -35429,7 +35934,6 @@ plexiform layer using GABA. - A type II vestibular sensory cell that is part of the stato-acoustic epithelium. FMA:263194 @@ -35443,7 +35947,6 @@ plexiform layer using GABA. - A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth. FMA:263196 @@ -35457,7 +35960,6 @@ plexiform layer using GABA. - A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth. FMA:263198 @@ -35471,7 +35973,6 @@ plexiform layer using GABA. - A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth. FMA:263200 @@ -36334,6 +36835,7 @@ plexiform layer using GABA. + An epithelial cell that is part of the collecting duct of renal tubule. FMA:70982 @@ -36823,6 +37325,7 @@ plexiform layer using GABA. + An epithelial cell that is part of a nephron tubule. FMA:86785 @@ -36905,7 +37408,7 @@ plexiform layer using GABA. - + KUPO:0001020 cell CL:1000507 @@ -36968,7 +37471,7 @@ plexiform layer using GABA. - + KUPO:0001063 cell @@ -37069,6 +37572,7 @@ plexiform layer using GABA. + KUPO:0001024 cell @@ -37302,6 +37806,7 @@ plexiform layer using GABA. + KUPO:0001130 @@ -37315,6 +37820,7 @@ plexiform layer using GABA. + KUPO:0001131 @@ -38131,7 +38637,7 @@ plexiform layer using GABA. - + KUPO:0001012 Wikipedia:Kidney_collecting_duct_cell cell @@ -39260,6 +39766,7 @@ plexiform layer using GABA. + Any lung endothelial cell that is part of a microvascular endothelium. TermGenie 2014-06-04T16:00:56Z @@ -39544,9 +40051,10 @@ plexiform layer using GABA. Any neuromast support cell that is part of a anterior lateral line. TermGenie 2014-06-25T03:44:51Z + anterior lateral line neuromast support cell cell CL:2000036 - anterior lateral line neuromast support cell + anterior lateral line neuromast supporting cell @@ -39586,9 +40094,10 @@ plexiform layer using GABA. Any neuromast support cell that is part of a posterior lateral line. TermGenie 2014-06-25T03:45:11Z + posterior lateral line neuromast support cell cell CL:2000039 - posterior lateral line neuromast support cell + posterior lateral line neuromast supporting cell @@ -39930,7 +40439,7 @@ plexiform layer using GABA. - + Any capillary endothelial cell that is part of a placenta. TermGenie 2014-10-07T17:55:56Z @@ -40198,12 +40707,13 @@ plexiform layer using GABA. - Any mesenchymal stem cell of adipose that is part of a abdomen. + Any mesenchymal stem cell of adipose tissue that is part of an abdomen. TermGenie 2014-12-02T19:10:34Z + mesenchymal stem cell of abdominal adipose cell CL:2000080 - mesenchymal stem cell of abdominal adipose + mesenchymal stem cell of abdominal adipose tissue @@ -40343,6 +40853,8 @@ plexiform layer using GABA. + + Any stellate cell that is part of a dentate gyrus of hippocampal formation. TermGenie 2015-02-23T05:48:40Z @@ -40356,6 +40868,7 @@ plexiform layer using GABA. + Any microvascular endothelial cell that is part of a endometrial blood vessel. TermGenie @@ -40428,7 +40941,6 @@ plexiform layer using GABA. - Any fibroblast that is part of a reticular layer of dermis. TermGenie @@ -40647,12 +41159,12 @@ plexiform layer using GABA. - A Vip GABAergic cortical interneuron with bipolar morphology, with a soma found in L2/3. L2/3 bipolar Vip Cells have extending axons across all layers (with preferences for layers II/III and Va) and a dendritic tree that is vertically more restricted than deeper layer VIP cells and extend fewer dendrites into the layers outside their home layer (location of soma). L2/3 Bipolar Vip Cells have great variability in firing patterns, though most are continuous adapting. L2/3 Bipolar Vip Cells are more depolarized in their resting state, had less fast rectification, and had smaller after hyperpolarization than deeper Vip cells. + A vip GABAergic cortical interneuron with bipolar morphology, with a soma found in L2/3. L2/3 bipolar vip cells have extending axons across all layers (with preferences for layers II/III and Va) and a dendritic tree that is vertically more restricted than deeper layer vip cells and extend fewer dendrites into the layers outside their home layer (location of soma). L2/3 bipolar vip cells have great variability in firing patterns, though most are continuous adapting. L2/3 bipolar vip cells are more depolarized in their resting state, had less fast rectification, and had smaller after hyperpolarization than deeper vip cells. L2/3 bipolar Vip (Mus) CL:4023007 - L2/3 bipolar Vip GABAergic cortical interneuron (Mus musculus) + L2/3 bipolar vip GABAergic cortical interneuron (Mus musculus) @@ -40713,7 +41225,7 @@ plexiform layer using GABA. ILX:0770149 CL:4023011 - Lamp5 GABAergic cortical interneuron + lamp5 GABAergic cortical interneuron @@ -40753,12 +41265,12 @@ plexiform layer using GABA. - A Vip GABAergic cortical interneuron with a soma found in L5. L5 Vip cells have mostly local morphology with some deep-projecting axons. They show only moderate resistance, comparable to that of Sst subclass and unlike typical Vip subclass cells that tend to show high input resistance. L5 Vip cells show particularly low resting membrane potential. + A vip GABAergic cortical interneuron with a soma found in L5. L5 vip cells have mostly local morphology with some deep-projecting axons. They show only moderate resistance, comparable to that of sst subclass and unlike typical Vip subclass cells that tend to show high input resistance. L5 vip cells show particularly low resting membrane potential. L5 VIP (Mus) CL:4023014 - L5 Vip cortical GABAergic interneuron (Mus musculus) + L5 vip cortical GABAergic interneuron (Mus musculus) @@ -40786,7 +41298,7 @@ plexiform layer using GABA. ILX:0770151 CL:4023016 - Vip GABAergic cortical interneuron + vip GABAergic cortical interneuron @@ -40823,12 +41335,12 @@ plexiform layer using GABA. - A Vip GABAergic cortical interneuron that expresses CCK. L5/6 CCK cells have soma found mainly in L5 and L6 and have large axonal arborization. + A vip GABAergic cortical interneuron that expresses cck. L5/6 cck cells have soma found mainly in L5 and L6 and have large axonal arborization. L5/6 CCK Vip (Mus) CL:4023019 - L5/6 CCK, Vip cortical GABAergic interneuron (Mus musculus) + L5/6 cck, vip cortical GABAergic interneuron (Mus musculus) @@ -40865,7 +41377,7 @@ plexiform layer using GABA. http://orcid.org/0000-0001-7258-9596 CL:4023022 - canopy Lamp5 GABAergic cortical interneuron (Mus musculus) + canopy lamp5 GABAergic cortical interneuron (Mus musculus) @@ -40875,12 +41387,12 @@ plexiform layer using GABA. - A Lamp 5 GABAergic cortical interneuron with neurogliaform morphology with a soma found in L5,6. L5,6 NGC Lamp5 have deep afterhyperpolarization (AHP) but narrow action potentials (APs). Unlike other deep neurogliaform cells (which are caudal ganglionic eminence (CGE) derived), L5,6 NGC Lamp5 cells are medial ganglionic eminence (MGE)-derived + A lamp 5 GABAergic cortical interneuron with neurogliaform morphology with a soma found in L5,6. L5,6 NGC lamp5 have deep afterhyperpolarization (AHP) but narrow action potentials (APs). Unlike other deep neurogliaform cells (which are caudal ganglionic eminence (CGE) derived), L5,6 NGC lamp5 cells are medial ganglionic eminence (MGE)-derived http://orcid.org/0000-0001-7258-9596 L5,6 NGC Lamp5 (mus) CL:4023023 - L5,6 Neurogliaform Lamp5 GABAergic cortical interneuron (Mus musculus) + L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mus musculus) @@ -40890,12 +41402,12 @@ plexiform layer using GABA. - A Lamp5 GABAergic cortical interneuron with layer-adapting morphology. NGC Lamp5 cells have a small round soma, short dendrites, and a wide dense axonal arbor that tends to establish a dense axonal mesh with high connection probability both to themselves and L2 pyramidal cells. NGC Lamp5 cells have unique synaptic properties that distinguish them from other GABAergic interneurons, including the release of GABA to the extracellular space via volume transmission, and the ability to produce GABA-B responses in connected postsynaptic targets. + A lamp5 GABAergic cortical interneuron with layer-adapting morphology. NGC lamp5 cells have a small round soma, short dendrites, and a wide dense axonal arbor that tends to establish a dense axonal mesh with high connection probability both to themselves and L2 pyramidal cells. NGC lamp5 cells have unique synaptic properties that distinguish them from other GABAergic interneurons, including the release of GABA to the extracellular space via volume transmission, and the ability to produce GABA-B responses in connected postsynaptic targets. http://orcid.org/0000-0001-7258-9596 NGC Lamp5 (mus) CL:4023024 - Neurogliaform Lamp5 GABAergic cortical interneuron (Mus musculus) + neurogliaform lamp5 GABAergic cortical interneuron (Mus musculus) @@ -40903,13 +41415,13 @@ plexiform layer using GABA. - - A Sst GABAergic cortical interneuron that is both an interneuron and a projecting neuron. They are found in all layers from upper L2/3 down to the bottom of L6. They have long-range projections, some with axons fading into white matter. These cells have low rebound potential, low hyperpolarization sag, and high variability in membrane time constant. + + A sst GABAergic cortical interneuron that is both an interneuron and a projecting neuron. They are found in all layers from upper L2/3 down to the bottom of L6. They have long-range projections, some with axons fading into white matter. These cells have low rebound potential, low hyperpolarization sag, and high variability in membrane time constant. http://orcid.org/0000-0001-7258-9596 LP SST (Mus) CL:4023025 - Long-range projecting Sst GABAergic cortical interneuron (Mus musculus) + long-range projecting sst GABAergic cortical interneuron (Mus musculus) @@ -40919,12 +41431,12 @@ plexiform layer using GABA. - A Sst GABAergic cortical interneuron with a soma found in L5 and possesses 'T-shaped' Martinotti morphologies with local axonal plexus in L5a and translaminar axons restricted to the uppermost part of L1. They show low-threshold spiking patterns with strong rebound firing, and inhibit the L1 apical tuft of nearby pyramidal cells. + A sst GABAergic cortical interneuron with a soma found in L5 and possesses 'T-shaped' Martinotti morphologies with local axonal plexus in L5a and translaminar axons restricted to the uppermost part of L1. They show low-threshold spiking patterns with strong rebound firing, and inhibit the L1 apical tuft of nearby pyramidal cells. http://orcid.org/0000-0001-7258-9596 L5 T Martinotti SST (Mus) CL:4023027 - L5 T-Martinotti Sst GABAergic cortical interneuron (Mus musculus) + L5 T-Martinotti sst GABAergic cortical interneuron (Mus musculus) @@ -40933,12 +41445,12 @@ plexiform layer using GABA. - A Sst GABAergic cortical interneuron with a soma found in lower L5 with mostly local axonal arborization but with some sparse ascending axons. L5 non-Martinotti Sst cells show somatic localization and local axon plexus in L5b and L5b/6 and substantial innervation of L3 and L4, and receive thalamic input from the ventral posteromedial nucleus and specifically target L4 neurons, avoiding L5 pyramidal cells. L5 non-Martinotti Sst cells tend to show a higher input resistance and seem to be less stuttering. + A sst GABAergic cortical interneuron with a soma found in lower L5 with mostly local axonal arborization but with some sparse ascending axons. L5 non-Martinotti sst cells show somatic localization and local axon plexus in L5b and L5b/6 and substantial innervation of L3 and L4, and receive thalamic input from the ventral posteromedial nucleus and specifically target L4 neurons, avoiding L5 pyramidal cells. L5 non-Martinotti sst cells tend to show a higher input resistance and seem to be less stuttering. http://orcid.org/0000-0001-7258-9596 L5 non-Martinotti SST (Mus) CL:4023028 - L5 non-Martinotti Sst GABAergic cortical interneuron (Mus musculus) + L5 non-Martinotti sst GABAergic cortical interneuron (Mus musculus) @@ -40948,13 +41460,13 @@ plexiform layer using GABA. - A Sst GABAergic cortical interneuron that has "fanning-out' Martinotti morphology that is found in layer 2/3/5 of the cerebral cortex. They have local axon arbor and long ascending axons that spreads horizontally and arborizes significantly in L1. + A sst GABAergic cortical interneuron that has "fanning-out' Martinotti morphology that is found in layer 2/3/5 of the cerebral cortex. They have local axon arbor and long ascending axons that spreads horizontally and arborizes significantly in L1. http://orcid.org/0000-0001-7258-9596 L2/3/5 fan Martinotti SST (Mus) CL:4023030 L2/3/5 fan Martionotti SST cells have an adapting firing pattern and non-zero afterdepolarization (ADP). - L2/3/5 fan Martinotti Sst GABAergic cortical interneuron (Mus musculus) + L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mus musculus) @@ -40964,12 +41476,12 @@ plexiform layer using GABA. - A Sst GABAergic cortical interneuron with a soma found in lower L2/3 and upper 5, L4 Sst cells have Martinotti morphology with ascending axons but denser local axons and sparser ‘fanning-out’ projections to L1. L4 Sst cells have smaller membrane time constant to calb2 (L2/3/5 Fan Martinotti Cell) and non-zero afterdepolarization (ADP). + A sst GABAergic cortical interneuron with a soma found in lower L2/3 and upper 5, L4 Sst cells have Martinotti morphology with ascending axons but denser local axons and sparser ‘fanning-out’ projections to L1. L4 sst cells have smaller membrane time constant to calb2 (L2/3/5 fan Martinotti Cell) and non-zero afterdepolarization (ADP). http://orcid.org/0000-0001-7258-9596 L4 SST (Mus) CL:4023031 - L4 Sst GABAergic cortical interneuron (Mus musculus) + L4 sst GABAergic cortical interneuron (Mus musculus) @@ -40977,13 +41489,14 @@ plexiform layer using GABA. - - A Sst GABAergic cortical interneuron transcriptomically between the Sst and the Pvalb families with a soma found in L2/3. Some L2/3 PV-like SST cells have Martinotti morphology while some have basket cell morphology. L2/3 PV-like SST cells have lower AP width and higher firing rate than typical Sst subclass cells. L2/3 PV-like SST cells have high maximum firing rate variability, with many classified as belonging to the Pvalb subclass on the basis of electrophysiology. + OBSOLETE A sst GABAergic cortical interneuron transcriptomically between the sst and the pvalb families with a soma found in L2/3. Some L2/3 PV-like sst cells have Martinotti morphology while some have basket cell morphology. L2/3 PV-like sst cells have lower AP width and higher firing rate than typical Sst subclass cells. L2/3 PV-like sst cells have high maximum firing rate variability, with many classified as belonging to the pvalb subclass on the basis of electrophysiology. + PCL:1000002 http://orcid.org/0000-0001-7258-9596 L2/3 PV-like SST Mus) CL:4023034 - - L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) + Moved to PCL - see https://github.com/obophenotype/brain_data_standards_ontologies/issues/231. Use PCL:1000002 instead. + obsolete L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) + true @@ -40993,14 +41506,14 @@ plexiform layer using GABA. - A Pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. + A pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner. http://orcid.org/0000-0001-7258-9596 ILX:0107356 Chandelier PV CL:4023036 In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag. - Chandelier Pvalb GABAergic cortical interneuron + chandelier pvalb GABAergic cortical interneuron @@ -41334,14 +41847,14 @@ plexiform layer using GABA. - - - A L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) that has Martinotti morphology. + OBSOLETE A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has Martinotti morphology. + PCL:1000004 Martinotti L2/3 PV-like SST (Mus) CL:4023067 - - Martinotti morphology L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) + Moved to PCL - see https://github.com/obophenotype/brain_data_standards_ontologies/issues/231. Use PCL:1000004 instead. + obsolete Martinotti morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) + true @@ -41377,12 +41890,26 @@ plexiform layer using GABA. - A GABAergic cortical interneuron that expresses CCK. L5/6 CCK cells have soma found mainly in L5 and L6 and have large axonal arborization. + A GABAergic cortical interneuron that expresses cck. L5/6 cck cells have soma found mainly in L5 and L6 and have large axonal arborization. L5/6 CCK (Mus) CL:4023071 - L5/6 CCK cortical GABAergic interneuron (Mus musculus) + L5/6 cck cortical GABAergic interneuron (Mus musculus) + + + + + + + + + A sst GABAergic cortical interneuron found in L6 that expresses tyrosine hydroxylase. L6 Th+ SST cells have mostly local axonal arborization within L6. + + L6 Th+ SST (Mus) + CL:4023075 + + L6 tyrosine hydroxylase positive sst expressing GABAergic cortical interneuron (Mus musculus) @@ -41420,14 +41947,14 @@ plexiform layer using GABA. - - - A L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) that has basket morphology. + OBSOLETE A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has basket morphology. + PCL:1000003 basket L2/3 PV-like SST (Mus) CL:4023078 - - basket morphology L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) + Moved to PCL - see https://github.com/obophenotype/brain_data_standards_ontologies/issues/231. Use PCL:1000003 instead. + obsolete basket morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) + true @@ -41601,7 +42128,6 @@ plexiform layer using GABA. - A mesothelial fibroblast of the arachnoid barrier layer. Arachnoid barrier cells make up the tight-junctioned layer in the leptomeninx that functions as the physiologic barrier between the cerebrospinal fluid in the subarachnoid space and the fenestrated capillaries in the dura. @@ -41929,6 +42455,179 @@ plexiform layer using GABA. + + + + + A sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection. + + long-range GABAergic interneuron + CL:4023121 + sst chodl GABAergic cortical interneuron + + + + + + + + + An interneuron located in the cerebral cortex that expresses the oxytocin receptor. These interneurons also express somatostatin. + + + OxtrINs + CL:4023122 + These cells were first identified in mouse. + oxytocin receptor sst GABAergic cortical interneuron + + + + + + + + + A retinal cell that is immature or undifferentiated. + + + retinal stem cell + CL:4023129 + retinoblast + + + + + + + + + + Any capillary endothelial cell that is part of a lung. + http://orcid.org/0000-0002-3293-5463 + 2021-11-23T02:31:40Z + lung capillary endothelial cell + CL:4028001 + pulmonary capillary endothelial cell + + + + + + + + + + An alveolar capillary endothelial cell that is located distally to alveolar capillary type 2 endothelial cells. + http://orcid.org/0000-0002-3293-5463 + 2021-11-23T03:23:53Z + 'CAP1' + 'capillary 1 cell' + 'gCAP' + 'general capillary cell' + CL:4028002 + alveolar capillary type 1 endothelial cell + + + + + + + + + + An alveolar capillary endothelial cell that is located proximally to alveolar capillary type 1 endothelial cells and in close apposition to alveolar type 1 epithelial cells (also known as type I pneumocytes). + http://orcid.org/0000-0002-3293-5463 + 2021-11-23T03:23:53Z + CD34hi endothelial cells + Car4+ capillary endothelial cell + aCAP + aerocyte + alveolar capillary cell + capillary 2 cell + CL:4028003 + alveolar capillary type 2 endothelial cell + + + + + + + + + + A pulmonary interstitial fibroblast that is part of the alveolus and contains lipid droplets. + https://orcid.org/0000-0001-9610-7627 + https://orcid.org/0000-0002-1425-877X + https://orcid.org/0000-0002-8445-4565 + http://orcid.org/0000-0002-3293-5463 + 2021-12-09T15:34:13Z + AF1 + alveolar fibroblast + alveolar fibroblast 1 + lipid interstitial cell + lipofibroblast + matrix fibroblast 1 + pulmonary lipofibroblast + CL:4028004 + alveolar type 1 fibroblast cell + + + + + + + + + + A pulmonary interstitial fibroblast that is part of the alveolus and localizes to vascular adventitia. + http://orcid.org/0000-0002-3293-5463 + 2021-12-09T15:53:21Z + AF2 + MANC + adventitial fibroblast + alveolar fibroblast + matrix fibroblast 2 + mesenchymal alveolar niche cell + type-2 associated stromal cell + CL:4028006 + alveolar type 2 fibroblast cell + + + + + + + + + A melanocyte located in the vascular uvea and involved in photoprotection, regulation of oxidative damage and immune responses. + http://orcid.org/0000-0002-1773-2692 + 2022-01-20T12:59:06Z + uveal melanocyte + CL:4030000 + Cellular functions and extracellular interactions of choroidal melanocytes are distinct to skin melanocytes. They might have both neuroectodermal as well as mesectodermal origins. + choroidal melanocyte + + + + + + + + + An alpha-beta memory T cell with the phenotype CD45RA-positive. + + 2022-02-01T13:04:46Z + TEMRA + effector memory RA T cell + TEMRA cell + terminally differentiated effector memory CD45RA+ T cells + terminally differentiated effector memory cells re-expressing CD45RA + CL:4030002 + effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated + + + + diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 1fe4230a2d..a4444e365c 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -280,13 +280,6 @@ $(IMPORTDIR)/chebi_import.owl: $(MIRRORDIR)/chebi.owl $(IMPORTDIR)/chebi_terms_c query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \ annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi -## Module for ontology: ncbitaxon - -$(IMPORTDIR)/ncbitaxon_import.owl: $(MIRRORDIR)/ncbitaxon.owl $(IMPORTDIR)/ncbitaxon_terms_combined.txt - if [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then $(ROBOT) extract -i $< -T $(IMPORTDIR)/ncbitaxon_terms_combined.txt --force true --individuals include --method BOT \ - query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \ - annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi - .PHONY: refresh-imports refresh-imports: make IMP=true MIR=true PAT=false IMP_LARGE=true all_imports -B @@ -374,7 +367,7 @@ mirror-ro: | $(TMPDIR) .PHONY: mirror-bspo .PRECIOUS: $(MIRRORDIR)/bspo.owl mirror-bspo: | $(TMPDIR) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/bspo.owl --create-dirs -o $(MIRRORDIR)/bspo.owl --retry 4 --max-time 200 && $(ROBOT) convert -i $(MIRRORDIR)/bspo.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi + if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/bspo/bspo-base.owl --create-dirs -o $(MIRRORDIR)/bspo.owl --retry 4 --max-time 200 && $(ROBOT) convert -i $(MIRRORDIR)/bspo.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi ## ONTOLOGY: chebi @@ -402,7 +395,7 @@ mirror-bfo: | $(TMPDIR) .PHONY: mirror-ncbitaxon .PRECIOUS: $(MIRRORDIR)/ncbitaxon.owl mirror-ncbitaxon: | $(TMPDIR) - if [ $(MIR) = true ] && [ $(IMP) = true ] && [ $(IMP_LARGE) = true ]; then curl -L $(URIBASE)/ncbitaxon.owl.gz --create-dirs -o $(MIRRORDIR)/ncbitaxon.owl.gz --retry 4 --max-time 200 && $(ROBOT) convert -i $(MIRRORDIR)/ncbitaxon.owl.gz -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi + if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi ## ONTOLOGY: nbo @@ -430,7 +423,7 @@ mirror-cteno: | $(TMPDIR) .PHONY: mirror-ehdaa2 .PRECIOUS: $(MIRRORDIR)/ehdaa2.owl mirror-ehdaa2: | $(TMPDIR) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(URIBASE)/ehdaa2.owl --create-dirs -o $(MIRRORDIR)/ehdaa2.owl --retry 4 --max-time 200 && $(ROBOT) convert -i $(MIRRORDIR)/ehdaa2.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi + if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I https://raw.githubusercontent.com/cmungall/human-developmental-anatomy-ontology/uberon/src/ontology/ehdaa2-edit.obo -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi ## ONTOLOGY: emapa diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 162c426eb8..0c31d17365 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -186,8 +186,8 @@ property_value: doap-GitRepository https://github.com/cmungall/uberon/ xsd:anyUR property_value: doap-mailing-list https://lists.sourceforge.net/lists/listinfo/obo-anatomy xsd:anyURI property_value: doap-SVNRepository https://obo.svn.sourceforge.net/svnroot/obo/uberon/ xsd:anyURI property_value: foaf-homepage http://uberon.org xsd:anyURI -property_value: IAO:0000700 UBERON:0000104 -property_value: IAO:0000700 UBERON:0001062 +property_value: has_ontology_root_term UBERON:0000104 +property_value: has_ontology_root_term UBERON:0001062 treat-xrefs-as-has-subclass: EHDAA treat-xrefs-as-has-subclass: EV treat-xrefs-as-has-subclass: NCIT @@ -45979,6 +45979,7 @@ property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/4/43/C id: UBERON:0002246 name: dorsal thoracic nucleus def: "Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments." [NLXANAT:20090102] +comment: "Created by Sarah M. Maynard" xsd:string subset: uberon_slim synonym: "Clarke's column" EXACT [] synonym: "Clarke's nuclei" RELATED PLURAL [NLXANAT:20090102] @@ -46002,7 +46003,6 @@ xref: Wikipedia:Clarke's_column is_a: UBERON:0011777 {source="FMA"} ! nucleus of spinal cord relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord property_value: external_definition "Clarke's column (column of Clarke, dorsal nucleus, posterior thoracic nucleus, nucleus dorsalis of Clarke) is a group of interneurons found in the medial part of Lamina VII, also known as the intermediate zone, of the spinal cord. It is mainly located from the T1 to L3-L4 levels and is an important structure for proprioception[Wikipedia:Posterior_thoracic_nucleus]." xsd:string {source="Wikipedia:Posterior_thoracic_nucleus"} -property_value: IAO:0000117 "Sarah M. Maynard" xsd:string [Term] id: UBERON:0002247 @@ -81571,7 +81571,6 @@ xref: NCIT:C32256 xref: SCTID:280605006 xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"} xref: Wikipedia:Schlemm's_canal -xref: ZFA:0005829 is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0003956 ! aqueous drainage system relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus @@ -91649,7 +91648,6 @@ xref: UMLS:C0022427 {source="ncithesaurus:Jugular_Vein"} xref: Wikipedia:Jugular_vein is_a: UBERON:0001638 ! vein relationship: drains UBERON:0000033 ! head -relationship: part_of UBERON:0000974 ! neck property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png xsd:anyURI [Term] @@ -191126,127 +191124,127 @@ is_a: UBERON:0005612 ! intercostal artery [Term] id: UBERON:0039838 name: seventh anterior intercostal artery +xref: FMA:10649 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery -xref: FMA:10649 ! seventh anterior intercostal artery [Term] id: UBERON:0039839 name: eighth anterior intercostal artery +xref: FMA:10650 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery -xref: FMA:10650 ! eighth anterior intercostal artery [Term] id: UBERON:0039840 name: ninth anterior intercostal artery +xref: FMA:10651 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery -xref: FMA:10651 ! ninth anterior intercostal artery [Term] id: UBERON:0039841 name: first anterior intercostal artery +synonym: "first intercostal branch of internal thoracic artery" EXACT [FMA:10652] +xref: FMA:10652 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery -synonym: "first intercostal branch of internal thoracic artery" EXACT [FMA:10652] -xref: FMA:10652 ! first anterior intercostal artery [Term] id: UBERON:0039842 name: second anterior intercostal artery +synonym: "second intercostal branch of internal thoracic artery" EXACT [FMA:10653] +xref: FMA:10653 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery -synonym: "second intercostal branch of internal thoracic artery" EXACT [FMA:10653] -xref: FMA:10653 ! second anterior intercostal artery [Term] id: UBERON:0039843 name: third anterior intercostal artery +synonym: "third intercostal branch of internal thoracic artery" EXACT [FMA:10654] +xref: FMA:10654 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery -synonym: "third intercostal branch of internal thoracic artery" EXACT [FMA:10654] -xref: FMA:10654 ! third anterior intercostal artery [Term] id: UBERON:0039844 name: fourth anterior intercostal artery +synonym: "fourth intercostal branch of internal thoracic artery" EXACT [FMA:10655] +xref: FMA:10655 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery -synonym: "fourth intercostal branch of internal thoracic artery" EXACT [FMA:10655] -xref: FMA:10655 ! fourth anterior intercostal artery [Term] id: UBERON:0039845 name: fifth anterior intercostal artery +synonym: "fifth intercostal branch of internal thoracic artery" EXACT [FMA:10656] +xref: FMA:10656 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery -synonym: "fifth intercostal branch of internal thoracic artery" EXACT [FMA:10656] -xref: FMA:10656 ! fifth anterior intercostal artery [Term] id: UBERON:0039846 name: sixth anterior intercostal artery +synonym: "sixth intercostal branch of internal thoracic artery" EXACT [FMA:10657] +xref: FMA:10657 is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery -synonym: "sixth intercostal branch of internal thoracic artery" EXACT [FMA:10657] -xref: FMA:10657 ! sixth anterior intercostal artery [Term] id: UBERON:0039847 name: suprascapular artery +synonym: "transverse scapular artery" EXACT [FMA:10663] +xref: FMA:10663 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0039260 {source="FMA"} ! thyrocervical artery -synonym: "transverse scapular artery" EXACT [FMA:10663] -xref: FMA:10663 ! suprascapular artery [Term] id: UBERON:0039848 name: anterior external vertebral venous plexus +xref: FMA:10787 is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus -xref: FMA:10787 ! anterior external vertebral venous plexus [Term] id: UBERON:0039849 name: posterior external vertebral venous plexus +xref: FMA:12852 is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus -xref: FMA:12852 ! posterior external vertebral venous plexus [Term] id: UBERON:0039850 name: left anterior segmental artery -synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13279] -synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] -synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] -xref: FMA:13279 ! left anterior segmental artery +synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13279] +synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] +synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] +xref: FMA:13279 [Term] id: UBERON:0039851 name: apicoposterior segmental artery +synonym: "apicoposterior artery of left lung" EXACT [FMA:13281] +synonym: "apicoposterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13281] +synonym: "left apicoposterior pulmonary artery" EXACT [FMA:13281] +xref: FMA:13281 is_a: UBERON:0039262 {source="FMA"} ! segmental pulmonary artery -synonym: "apicoposterior artery of left lung" EXACT [FMA:13281] -synonym: "apicoposterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13281] -synonym: "left apicoposterior pulmonary artery" EXACT [FMA:13281] -xref: FMA:13281 ! apicoposterior segmental artery [Term] id: UBERON:0039856 name: right ovarian vein def: "Ovarian vein, each instance of which is a tributary of some inferior vena cava that drains the right pampiniform plexus of some broad ligament." [FMA:14342] +xref: FMA:14342 is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: drains UBERON:0002118 ! right ovary relationship: tributary_of UBERON:0001072 {source="FMA"} ! posterior vena cava -xref: FMA:14342 ! right ovarian vein [Term] id: UBERON:0039857 name: left ovarian vein def: "Ovarian vein, each instance of which is a tributary of some left renal vein that drains the left pampiniform plexus of some broad ligament." [FMA:14347] +xref: FMA:14347 is_a: UBERON:0001145 {source="FMA"} ! ovarian vein intersection_of: UBERON:0001145 ! ovarian vein intersection_of: drains UBERON:0002119 ! left ovary -xref: FMA:14347 ! left ovarian vein [Term] id: UBERON:1000000 @@ -222069,7 +222067,7 @@ def: "The ridge of the trochlea on a humerus lies in the middle of the distal en is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0000144 ! trochlea of humerus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-27T23:57:42Z xsd:dateTime +property_value: dcterms-date 2021-05-27T23:57:42Z xsd:dateTime [Term] id: UBERON:7500062 @@ -222079,7 +222077,7 @@ synonym: "fossa digitalis" EXACT [] intersection_of: UBERON:0005813 ! tubercle intersection_of: part_of UBERON:0008772 ! proximal epiphysis of tibia relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T00:06:11Z xsd:dateTime +property_value: dcterms-date 2021-05-28T00:06:11Z xsd:dateTime [Term] id: UBERON:7500063 @@ -222090,7 +222088,7 @@ synonym: "trochlea of astragalus" EXACT [] synonym: "trochlea tali" EXACT [] is_a: UBERON:7500081 ! articular surface for the tibia on the talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T00:56:19Z xsd:dateTime +property_value: dcterms-date 2021-05-28T00:56:19Z xsd:dateTime [Term] id: UBERON:7500064 @@ -222100,7 +222098,7 @@ synonym: "trochlear groove of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T00:57:49Z xsd:dateTime +property_value: dcterms-date 2021-05-28T00:57:49Z xsd:dateTime [Term] id: UBERON:7500065 @@ -222110,7 +222108,7 @@ synonym: "condyle of astragalus" EXACT [] intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0002395 ! talus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T00:59:42Z xsd:dateTime +property_value: dcterms-date 2021-05-28T00:59:42Z xsd:dateTime [Term] id: UBERON:7500066 @@ -222120,7 +222118,7 @@ synonym: "medial condyle of astragalus" EXACT [] is_a: UBERON:0009979 ! condyle relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T01:00:50Z xsd:dateTime +property_value: dcterms-date 2021-05-28T01:00:50Z xsd:dateTime [Term] id: UBERON:7500067 @@ -222130,7 +222128,7 @@ synonym: "lateral condyle of astragalus" EXACT [] is_a: UBERON:0009979 ! condyle relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T01:02:26Z xsd:dateTime +property_value: dcterms-date 2021-05-28T01:02:26Z xsd:dateTime [Term] id: UBERON:7500068 @@ -222140,7 +222138,7 @@ synonym: "ridge of medial condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500066 ! medial condyle of talus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T01:03:10Z xsd:dateTime +property_value: dcterms-date 2021-05-28T01:03:10Z xsd:dateTime [Term] id: UBERON:7500069 @@ -222150,7 +222148,7 @@ synonym: "ridge of lateral condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500067 ! lateral condyle of talus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T01:03:51Z xsd:dateTime +property_value: dcterms-date 2021-05-28T01:03:51Z xsd:dateTime [Term] id: UBERON:7500070 @@ -222160,7 +222158,7 @@ synonym: "sulcus for flexor hallucis longus tendon" EXACT [] is_a: UBERON:0000093 ! sulcus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T01:09:52Z xsd:dateTime +property_value: dcterms-date 2021-05-28T01:09:52Z xsd:dateTime [Term] id: UBERON:7500071 @@ -222174,7 +222172,7 @@ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0003128 ! cranium relationship: part_of UBERON:0004089 ! midface -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T06:58:22Z xsd:dateTime +property_value: dcterms-date 2021-05-28T06:58:22Z xsd:dateTime [Term] id: UBERON:7500073 @@ -222183,7 +222181,7 @@ def: "Nasal bone on the left side of an organism when in anatomical position." [ intersection_of: UBERON:0001681 ! nasal bone intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T19:07:14Z xsd:dateTime +property_value: dcterms-date 2021-05-28T19:07:14Z xsd:dateTime [Term] id: UBERON:7500074 @@ -222192,7 +222190,7 @@ def: "Nasal bone on the right side of an organism when in anatomical position." intersection_of: UBERON:0001681 ! nasal bone intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T19:08:06Z xsd:dateTime +property_value: dcterms-date 2021-05-28T19:08:06Z xsd:dateTime [Term] id: UBERON:7500075 @@ -222201,7 +222199,7 @@ def: "Zygomatic arch on the left side of an organism when in anatomical position intersection_of: UBERON:0002500 ! zygomatic arch intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T19:10:56Z xsd:dateTime +property_value: dcterms-date 2021-05-28T19:10:56Z xsd:dateTime [Term] id: UBERON:7500076 @@ -222210,7 +222208,7 @@ def: "Zygomatic arch on the right side of an organism when in anatomical positio intersection_of: UBERON:0002500 ! zygomatic arch intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-05-28T19:11:21Z xsd:dateTime +property_value: dcterms-date 2021-05-28T19:11:21Z xsd:dateTime [Term] id: UBERON:7500077 @@ -222219,7 +222217,7 @@ def: "A trochlea on the distal end of a femur that interacts with the patella." synonym: "patellar surface of femur" EXACT [] is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0004406 ! distal epiphysis of femur -property_value: http://purl.org/dc/elements/1.1/date 2021-06-02T00:19:07Z xsd:dateTime +property_value: dcterms-date 2021-06-02T00:19:07Z xsd:dateTime [Term] id: UBERON:7500078 @@ -222230,7 +222228,7 @@ synonym: "radial styloid process" EXACT [] intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0004407 ! distal epiphysis of radius relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-06-03T00:20:10Z xsd:dateTime +property_value: dcterms-date 2021-06-03T00:20:10Z xsd:dateTime [Term] id: UBERON:7500079 @@ -222242,7 +222240,7 @@ is_a: UBERON:0004120 ! mesoderm-derived structure relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: in_taxon NCBITaxon:9788 ! Equidae relationship: part_of UBERON:0004407 ! distal epiphysis of radius -property_value: http://purl.org/dc/elements/1.1/date 2021-06-03T00:22:09Z xsd:dateTime +property_value: dcterms-date 2021-06-03T00:22:09Z xsd:dateTime [Term] id: UBERON:7500080 @@ -222252,7 +222250,7 @@ synonym: "distal articular surface of radius" EXACT [] is_a: UBERON:4100003 ! articular surface relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0004407 ! distal epiphysis of radius -property_value: http://purl.org/dc/elements/1.1/date 2021-06-03T00:23:08Z xsd:dateTime +property_value: dcterms-date 2021-06-03T00:23:08Z xsd:dateTime [Term] id: UBERON:7500081 @@ -222261,7 +222259,7 @@ def: "Contact surface between the tibia and the talus located on the talus." [ht is_a: UBERON:4100003 ! articular surface relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus -property_value: http://purl.org/dc/elements/1.1/date 2021-07-27T17:04:35Z xsd:dateTime +property_value: dcterms-date 2021-07-27T17:04:35Z xsd:dateTime [Term] id: UBERON:7500083 @@ -222270,7 +222268,7 @@ def: "A foramen of the skull found at either posterior angle of the hard palate, is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone -property_value: http://purl.org/dc/elements/1.1/date 2021-07-28T20:01:21Z xsd:dateTime +property_value: dcterms-date 2021-07-28T20:01:21Z xsd:dateTime [Term] id: UBERON:7500084 @@ -222279,7 +222277,7 @@ def: "A foramen of the skull found at either posterior angle of the hard palate is_a: UBERON:0013685 ! foramen of skull relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone -property_value: http://purl.org/dc/elements/1.1/date 2021-07-28T20:07:21Z xsd:dateTime +property_value: dcterms-date 2021-07-28T20:07:21Z xsd:dateTime [Term] id: UBERON:7500085 @@ -222288,17 +222286,17 @@ def: "A pulp-dentin complex or endodont that is part of a calcareous tooth." [ht synonym: "endodont" EXACT [] synonym: "pulp-dentin complex" EXACT [] is_a: UBERON:0010365 ! odontoid tissue +relationship: dc-contributor http://orcid.org/0000-0003-2699-3066 relationship: has_part UBERON:0001751 ! dentine relationship: has_part UBERON:0001754 ! dental pulp relationship: part_of UBERON:0001091 ! calcareous tooth -property_value: http://purl.org/dc/elements/1.1/date 2021-07-28T20:20:53Z xsd:dateTime -property_value: term:editor http://orcid.org/0000-0003-2699-3066 +property_value: dcterms-date 2021-07-28T20:20:53Z xsd:dateTime [Term] id: UBERON:7500088 name: obsolete distal articular surface of radius comment: already made this term -property_value: http://purl.org/dc/elements/1.1/date 2021-08-03T21:28:12Z xsd:dateTime +property_value: dcterms-date 2021-08-03T21:28:12Z xsd:dateTime is_obsolete: true replaced_by: UBERON:7500080 @@ -222310,7 +222308,7 @@ synonym: "proximal facet of calcaneum" EXACT [] is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:14:22Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:14:22Z xsd:dateTime [Term] id: UBERON:7500091 @@ -222319,7 +222317,7 @@ def: "Middle facet on the proximal surface of the calcaneus for the articulation is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:19:10Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:19:10Z xsd:dateTime [Term] id: UBERON:7500092 @@ -222329,7 +222327,7 @@ synonym: "distal facet of calcaneum" EXACT [] is_a: UBERON:4300038 ! facet relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:21:34Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:21:34Z xsd:dateTime [Term] id: UBERON:7500093 @@ -222339,7 +222337,7 @@ synonym: "corpus calcanei" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:23:29Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:23:29Z xsd:dateTime [Term] id: UBERON:7500094 @@ -222350,7 +222348,7 @@ synonym: "trochlear process of calcaneus" EXACT [] intersection_of: UBERON:0005813 ! tubercle intersection_of: part_of UBERON:0001450 ! calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:25:01Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:25:01Z xsd:dateTime [Term] id: UBERON:7500095 @@ -222358,7 +222356,7 @@ name: lateral tubercle of calcaneus def: "A raised projection on the lateral side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:7500094 ! tubercle of calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:26:41Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:26:41Z xsd:dateTime [Term] id: UBERON:7500096 @@ -222366,7 +222364,7 @@ name: medial tubercle of calcaneus def: "A raised projection on the medial side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:7500094 ! tubercle of calcaneus relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 -property_value: http://purl.org/dc/elements/1.1/date 2021-08-04T00:27:56Z xsd:dateTime +property_value: dcterms-date 2021-08-04T00:27:56Z xsd:dateTime [Term] id: UBERON:7500101 @@ -222473,7 +222471,7 @@ relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage relationship: preceded_by UBERON:0014406 ! nauplius stage -property_value: http://purl.org/dc/elements/1.1/date 2021-07-26T14:57:48Z xsd:dateTime +property_value: dcterms-date 2021-07-26T14:57:48Z xsd:dateTime [Term] id: UBERON:8200003 @@ -222485,7 +222483,7 @@ relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage relationship: preceded_by UBERON:8200002 ! copepodite stage 1 -property_value: http://purl.org/dc/elements/1.1/date 2021-07-26T15:07:18Z xsd:dateTime +property_value: dcterms-date 2021-07-26T15:07:18Z xsd:dateTime [Term] id: UBERON:8200004 @@ -222497,7 +222495,7 @@ relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage relationship: preceded_by UBERON:8200003 ! copepodite stage 2 -property_value: http://purl.org/dc/elements/1.1/date 2021-07-26T15:43:37Z xsd:dateTime +property_value: dcterms-date 2021-07-26T15:43:37Z xsd:dateTime [Term] id: UBERON:8200005 @@ -222509,7 +222507,7 @@ relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0014860 ! copepodite stage relationship: part_of UBERON:0018378 ! crustacean larval stage relationship: preceded_by UBERON:8200004 ! copepodite stage 3 -property_value: http://purl.org/dc/elements/1.1/date 2021-07-26T15:45:12Z xsd:dateTime +property_value: dcterms-date 2021-07-26T15:45:12Z xsd:dateTime [Term] id: UBERON:8200006 @@ -222520,7 +222518,7 @@ relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0000113 ! post-juvenile adult stage relationship: preceded_by UBERON:8200005 ! copepodite stage 4 -property_value: http://purl.org/dc/elements/1.1/date 2021-07-26T15:46:40Z xsd:dateTime +property_value: dcterms-date 2021-07-26T15:46:40Z xsd:dateTime [Term] id: UBERON:8200007 @@ -222531,7 +222529,7 @@ relationship: dc-contributor https://orcid.org/0000-0002-2908-3327 relationship: only_in_taxon NCBITaxon:6830 ! Copepoda relationship: part_of UBERON:0000066 ! fully formed stage relationship: preceded_by UBERON:8200006 ! copepodite stage 5 -property_value: http://purl.org/dc/elements/1.1/date 2021-07-26T15:48:54Z xsd:dateTime +property_value: dcterms-date 2021-07-26T15:48:54Z xsd:dateTime [Term] id: UBERON:8300000 @@ -223429,7 +223427,7 @@ synonym: "small intestine capillary" EXACT [] intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0002108 ! small intestine relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 -property_value: http://purl.org/dc/elements/1.1/date 2021-12-21T15:14:31Z xsd:dateTime +property_value: dcterms-date 2021-12-21T15:14:31Z xsd:dateTime [Term] id: UBERON:8410069 @@ -223440,7 +223438,7 @@ synonym: "avian lymphoid nodule" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: in_taxon NCBITaxon:8782 ! Aves -property_value: http://purl.org/dc/elements/1.1/date 2022-01-24T16:47:47Z xsd:dateTime +property_value: dcterms-date 2022-01-24T16:47:47Z xsd:dateTime [Term] id: UBERON:8410070 @@ -223456,30 +223454,34 @@ relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: has_muscle_insertion UBERON:0002228 ! rib relationship: has_muscle_origin UBERON:0001077 ! transverse process of vertebra relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/date 2022-01-27T10:41:44Z xsd:dateTime +property_value: dcterms-date 2022-01-27T10:41:44Z xsd:dateTime [Term] id: UBERON:8410071 name: subcapsular sinus ceiling -def: "The upward section of the subcapsular sinus of lymph node. In human, it's characterized by specific protein markers." [PMID:31402260] +def: "The section of the lymph node capsule that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [PMID:31402260] synonym: "ceiling of subcapsular sinus of lymph node" EXACT [] +synonym: "floor of capsule of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node ceiling" EXACT [] is_a: UBERON:0000064 ! organ part +relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 -relationship: part_of UBERON:0005463 ! subcapsular sinus of lymph node +relationship: part_of UBERON:0002194 ! capsule of lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/date 2022-02-22T17:04:49Z xsd:dateTime +property_value: dcterms-date 2022-02-22T17:04:49Z xsd:dateTime [Term] id: UBERON:8410072 name: subcapsular sinus floor -def: "The downward section of the subcapsular sinus of lymph node. In human, it's characterized by specific protein markers." [PMID:31402260] +def: "The section of the lymph node cortex that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [PMID:31402260] +synonym: "ceiling of cortex of lymph node" EXACT [] synonym: "floor of subcapsular sinus of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node floor" EXACT [] is_a: UBERON:0000064 ! organ part +relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 -relationship: part_of UBERON:0005463 ! subcapsular sinus of lymph node -property_value: http://purl.org/dc/elements/1.1/date 2022-02-22T17:16:40Z xsd:dateTime +relationship: part_of UBERON:0002006 ! cortex of lymph node +property_value: dcterms-date 2022-02-22T17:16:40Z xsd:dateTime [Term] id: UBERON:8410073 @@ -223491,7 +223493,7 @@ is_a: UBERON:0000064 ! organ part relationship: has_part UBERON:0001284 ! renal column relationship: has_part UBERON:0004200 ! kidney pyramid relationship: part_of UBERON:0002113 ! kidney -property_value: http://purl.org/dc/elements/1.1/date 2022-02-03T14:18:40Z xsd:dateTime +property_value: dcterms-date 2022-02-03T14:18:40Z xsd:dateTime property_value: seeAlso https://github.com/obophenotype/uberon/issues/2126 xsd:string created_by: http://orcid.org/0000-0002-2825-0621 @@ -223507,7 +223509,7 @@ is_a: UBERON:0004111 ! anatomical conduit relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410066 ! lymph node paracortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/date 2022-02-24T11:30:26Z xsd:dateTime +property_value: dcterms-date 2022-02-24T11:30:26Z xsd:dateTime [Term] id: UBERON:8410075 @@ -223518,7 +223520,7 @@ is_a: UBERON:0000353 ! parenchyma relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410066 ! lymph node paracortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/date 2022-02-24T11:40:24Z xsd:dateTime +property_value: dcterms-date 2022-02-24T11:40:24Z xsd:dateTime [Term] id: UBERON:8410076 @@ -223533,7 +223535,7 @@ synonym: "glomus body" EXACT [PMID:30799440] synonym: "Luschka's gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] is_a: UBERON:0010000 ! multicellular anatomical structure relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 -property_value: http://purl.org/dc/elements/1.1/date 2022-02-24T14:12:33Z xsd:dateTime +property_value: dcterms-date 2022-02-24T14:12:33Z xsd:dateTime [Term] id: UBERON:8410077 @@ -223545,7 +223547,7 @@ xref: EFO:0010666 intersection_of: UBERON:0011148 ! submucosal gland intersection_of: part_of UBERON:0000065 ! respiratory tract relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 -property_value: http://purl.org/dc/elements/1.1/date 2022-03-24T14:21:59Z xsd:dateTime +property_value: dcterms-date 2022-03-24T14:21:59Z xsd:dateTime [Term] id: UBERON:8410078 @@ -223557,7 +223559,7 @@ xref: FMA:5832 is_a: UBERON:0001473 ! lymphatic vessel relationship: dc-contributor http://orcid.org/0000-0002-2825-0621 relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens -property_value: http://purl.org/dc/elements/1.1/date 2022-03-25T10:41:22Z xsd:dateTime +property_value: dcterms-date 2022-03-25T10:41:22Z xsd:dateTime [Term] id: UBERON:8420000 @@ -223873,6 +223875,12 @@ name: title xref: http://purl.org/dc/elements/1.1/title is_metadata_tag: true +[Typedef] +id: dcterms-date +name: date +xref: http://purl.org/dc/terms/date +is_metadata_tag: true + [Typedef] id: dcterms-isReferencedBy name: is referenced by @@ -224272,6 +224280,12 @@ expand_assertion_to: "Class: EquivalentT is_metadata_tag: true is_class_level: true +[Typedef] +id: has_ontology_root_term +name: has ontology root term +xref: IAO:0000700 +is_metadata_tag: true + [Typedef] id: has_part name: has part diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml index 2edf1907dc..ab83b7705e 100644 --- a/src/ontology/uberon-odk.yaml +++ b/src/ontology/uberon-odk.yaml @@ -36,19 +36,20 @@ import_group: - id: envo - id: ro - id: bspo + use_base: TRUE - id: chebi is_large: TRUE use_gzipped: TRUE - id: pato - id: bfo - id: ncbitaxon - is_large: TRUE - use_gzipped: TRUE + mirror_from: http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl - id: nbo # Pipeline dependencies (not directly imported) - id: ceph - id: cteno - id: ehdaa2 + mirror_from: https://raw.githubusercontent.com/cmungall/human-developmental-anatomy-ontology/uberon/src/ontology/ehdaa2-edit.obo - id: emapa - id: fbbt - id: fbdv diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 316ebbac29..3ea1ca3e0a 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -24,7 +24,7 @@ RELSIM = BFO:0000050 RO:0002202 immediate_transformation_of TAXON_GCI_RELS = RO:0002202 RO:0002496 RO:0002497 BFO:0000051 -all: uberon-qc prepare_release clean +all: uberon-qc echo "make $@ succeeded..." # ---------------------------------------- @@ -82,6 +82,8 @@ checks: $(REPORTDIR)/uberon-edit-xp-check $(REPORTDIR)/uberon-edit-obscheck.txt $(REPORTDIR)/uberon-orphans \ $(REPORTDIR)/uberon-synclash +test: $(REPORTDIR)/uberon-edit-xp-check reports/bfo-check.txt + # ---------------------------------------- # STEP 1: pre-processing and quick validation # ---------------------------------------- @@ -254,70 +256,30 @@ subsets/cumbo.obo: subsets/cumbo.owl # merge BSPO into RO # get rid of it -mirror/bspo.owl: $(OWLSRC) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) merge -I $(URIBASE)/bspo.owl remove --select "BFO:* RO:*" --select "object-properties" --axioms "annotation" -o $@.tmp.owl && mv $@.tmp.owl $@; fi +mirror/bspo.owl: mirror-bspo | $(MIRRORDIR) + if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) merge -I $(URIBASE)/bspo/bspo-base.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi .PRECIOUS: mirror/bspo.owl # Probably no reason to merge them first # --add-obo-shorthand-to-properties: remove this to add mappings into remove -mirror/ro.owl: $(OWLSRC) mirror/bspo.owl - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $(URIBASE)/ro.owl mirror/bspo.owl --merge-support-ontologies --merge-imports-closure --add-obo-shorthand-to-properties -o $@ && touch $@; fi - -# make-subset-by-properties -f BFO:0000050 excludes all properties that are not BFO:0000050, essentially making a basic file. Not super relevant here remove here -mirror/pato.owl: $(OWLSRC) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $(URIBASE)/pato.owl --extract-mingraph --make-subset-by-properties -f BFO:0000050 // --set-ontology-id $(URIBASE)/pato.owl -o $@; fi - -mirror/envo.owl: $(OWLSRC) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $(URIBASE)/envo.owl --extract-mingraph --set-ontology-id $(URIBASE)/envo.owl -o $@; fi - -mirror/nbo.owl: $(OWLSRC) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $(URIBASE)/nbo.owl --extract-mingraph --set-ontology-id $(URIBASE)/nbo.owl -o $@; fi - -mirror/chebi.obo.gz: $(OWLSRC) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then wget --no-check-certificate $(URIBASE)/chebi.obo.gz -O $@.tmp && mv $@.tmp $@ && touch $@; fi - -mirror/chebi.obo: mirror/chebi.obo.gz - if [ $(MIR) = true ] && [ $(IMP) = true ]; then gunzip -c $< > $@; fi - -# Does chebi still have these bad non RO OPs? Double check if relations are RO (partof) -mirror/chebi.owl: mirror/chebi.obo - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $< --extract-mingraph --rename-entity $(URIBASE)/chebi#has_part $(URIBASE)/BFO_0000051 --make-subset-by-properties -f BFO:0000051 // --set-ontology-id -v $(RELEASE)/chebi.owl $(URIBASE)/chebi.owl -o $@ && touch $@; fi - -# Do not rebuild: PR is now too big -# Why this step? (NICO: to get the branch and remove BFO top level). Dates back to the time when there were bad URIs, maybe we can switch to something normal now. - -#mirror/pr.owl.gz: $(OWLSRC) -# if [ $(MIR) = true ] && [ $(IMP) = true ]; then wget --no-check-certificate $(URIBASE)/pr.owl.gz -O $@.tmp && mv $@.tmp $@ && touch $@; fi -# currently using pro_obo_slim - -#mirror/pr-gunzip.owl: mirror/pr.owl.gz -# if [ $(MIR) = true ] && [ $(IMP) = true ]; then gunzip -c $< > $@; fi -# currently using pro_obo_slim +mirror/ro.owl: mirror/bspo.owl mirror-ro | $(MIRRORDIR) + if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $(URIBASE)/ro.owl $< --merge-support-ontologies --merge-imports-closure --add-obo-shorthand-to-properties -o $@ && touch $@; fi -#mirror/aminoacid.owl: mirror/pr-gunzip.owl -# if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $< --reasoner-query -r elk PR_000018263 --reasoner-dispose --make-ontology-from-results $(URIBASE)/uberon/aminoacid.owl -o $@; fi -# currently using pro_obo_slim +imports/envo_import.owl: + echo "ERROR $@ IMPORT CURRENTLY BLOCKED BECAUSE BROKEN UPSTREAM." -#mirror/pr.owl: mirror/aminoacid.owl -# if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) mirror/aminoacid.owl --extract-mingraph --rename-entity $(URIBASE)/pr#has_part $(URIBASE)/BFO_0000051 --rename-entity $(URIBASE)/pr#part_of $(URIBASE)/BFO_0000050 --make-subset-by-properties -f BFO:0000050 BFO:0000051 // --split-ontology -d components -l snap --remove-imports-declarations --remove-dangling --set-ontology-id $(URIBASE)/pr.owl -o $@ && touch $@; fi -# currently using pro_obo_slim +############ -mirror/ncbitaxon.obo: - if [ $(MIR) = true ] && [ $(IMP) = true ]; then wget $(URIBASE)/ncbitaxon.obo -O $@; fi - -mirror/fbbt.obo: - if [ $(MIR) = true ] && [ $(IMP) = true ]; then wget $(URIBASE)/fbbt.obo -O $@; fi - - -$(TMPDIR)/mirror-%: | $(TMPDIR) - if [ $(MIR) = true ] && [ $(IMP) = true ]; then wget --no-check-certificate $(URIBASE)/$* -O $@ && touch $@; fi -.PRECIOUS: $(TMPDIR)/mirror-% +# This goal here is needed as a new _intermediate_ for mirrors that need to be fixed +# by hacking into their OBO format representations. +$(TMPDIR)/mirror-%.obo: mirror-% | $(TMPDIR) + if [ $(IMP) = true ] && [ $(MIR) = true ]; then $(ROBOT) convert --input $(TMPDIR)/mirror-$*.owl --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo; fi # Filter only EMAPA classes # EMAPA using a list flat ids for stages, these are mapped to MmusDv ids by fix-emapa-stages.pl # It would be useful to make a combined stage ontology, but than make it filterable by species (subsets) -$(TMPDIR)/fixed-emapa.obo: $(TMPDIR)/mirror-emapa.obo | $(TMPDIR) - $(SCRIPTSDIR)/obo-grep.pl -r 'id: EMAPA' $< | $(SCRIPTSDIR)/fix-emapa-stages.pl > $@ +$(TMPDIR)/fixed-emapa.obo: $(TMPDIR)/mirror-emapa.obo + if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(SCRIPTSDIR)/obo-grep.pl -r 'id: EMAPA' $< | $(SCRIPTSDIR)/fix-emapa-stages.pl > $@; fi # stages must be mapped to MmusDv # We should add releate targets to stage ontology repo makefile. @@ -342,14 +304,14 @@ mirror/zfa.owl: $(TMPDIR)/fixed-zfa.obo $(TMPDIR)/fixed-ehdaa2.obo: $(TMPDIR)/mirror-ehdaa2.obo | $(SCRIPTSDIR)/obo-grep.pl $(SCRIPTSDIR)/fix-ehdaa2-stages.pl if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(SCRIPTSDIR)/obo-grep.pl -r 'id: (EHDAA2|AEO)' $< | $(SCRIPTSDIR)/fix-ehdaa2-stages.pl | grep -v ^alt_id > $@; fi -mirror/ehdaa2.obo: mirror/ehdaa2.owl +mirror/%.obo: mirror/%.owl if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(MAKEOBO); fi # https://raw.githubusercontent.com/cmungall/human-developmental-anatomy-ontology/uberon/src/ontology/ehdaa2-edit.obo # There was a period when Jonathan sent OBO files to Chris # Jonathan has "essentially" seeded the ownership? Double check -mirror/ehdaa2.owl: - if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) https://raw.githubusercontent.com/cmungall/human-developmental-anatomy-ontology/uberon/src/ontology/ehdaa2-edit.obo -o -f ofn $@; fi +#mirror/ehdaa2.owl: +# if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) https://raw.githubusercontent.com/cmungall/human-developmental-anatomy-ontology/uberon/src/ontology/ehdaa2-edit.obo -o -f ofn $@; fi #CMUNGALL_OBO_SCRIPTS=https://raw.githubusercontent.com/cmungall/obo-scripts/master/ #$(SCRIPTSDIR)/%.pl: @@ -376,8 +338,6 @@ mirror/ehdaa2.owl: # wget http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl -O cached-$@.owl && perl -pi -ne 's@http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#@$(URIBASE)/NIF_GrossAnatomy_@g' cached-$@.owl && owltools cached-$@.owl -o -f obo $@ - - #################################### ### Local Ontology dependencies #### #################################### @@ -394,6 +354,9 @@ imports/local-ceph.owl: # NON-ORTHOGONAL ONTOLOGY MIRRORING +## Devloper notes: Local files are used for a bunch of quality checks, and the composite file +## Not anywhere in normal uberon. + ## Map legacy OBO-format ObjectProperties to their BFO/RO intended equivalent ## a mirror is just a mirror, and local-mirror is a file with all that wrangling needed to message it into the right form. local- files are needed in composite file generation. ## @@ -443,13 +406,6 @@ imports/pato_import.owl: mirror/pato.owl imports/pato_terms_combined.txt query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \ annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi -# TODO - logical definitions go->ubr,cl -imports/go_import.owl: mirror/go.owl $(TMPDIR)/seed.owl - if [ $(IMP) = true ]; then $(OWLTOOLS) --map-ontology-iri $(ONTBASE)/$@ $< $(TMPDIR)/seed.owl --extract-module -s $(URIBASE)/go.owl -c --extract-mingraph --set-ontology-id -v $(RELEASE)/$@ $(ONTBASE)/$@ -o $@; fi - -imports/envo_import.owl: mirror/envo.owl $(TMPDIR)/seed.owl - if [ $(IMP) = true ]; then $(OWLTOOLS) --map-ontology-iri $(ONTBASE)/$@ $< $(TMPDIR)/seed.owl --extract-module -s $(URIBASE)/envo.owl -c --make-subset-by-properties --force --extract-mingraph --set-ontology-id -v $(RELEASE)/$@ $(ONTBASE)/$@ -o $@; fi - imports/nbo_import.owl: mirror/nbo.owl imports/nbo_terms_combined.txt if [ $(IMP) = true ]; then $(ROBOT) query -i $< --update ../sparql/preprocess-module.ru \ extract -T imports/nbo_terms_combined.txt --force true --copy-ontology-annotations true --individuals include --method BOT \ @@ -457,13 +413,6 @@ imports/nbo_import.owl: mirror/nbo.owl imports/nbo_terms_combined.txt remove --select "" \ query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \ annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi - -imports/chebi_import.owl: mirror/chebi.owl $(TMPDIR)/seed.owl - if [ $(IMP) = true ]; then $(OWLTOOLS) --map-ontology-iri $(ONTBASE)/$@ $< $(TMPDIR)/seed.owl --extract-module -s $(URIBASE)/chebi.owl -c --extract-mingraph --set-ontology-id -v $(RELEASE)/$@ $(ONTBASE)/$@ -o $@; fi - -#imports/pr_import.owl: mirror/pr.owl $(TMPDIR)/seed.owl -# if [ $(IMP) = true ]; then $(OWLTOOLS) --map-ontology-iri $(ONTBASE)/$@ $< $(TMPDIR)/seed.owl --extract-module -s $(URIBASE)/pr.owl -c --extract-mingraph --set-ontology-id -v $(RELEASE)/$@ $(ONTBASE)/$@ -o $@; fi -# Currently using pro_obo_slim imports/fbbt_import.owl: mirror/fbbt.owl imports/fbbt_terms_combined.txt if [ $(IMP) = true ]; then $(ROBOT) query -i $< --update ../sparql/preprocess-module.ru \ @@ -471,25 +420,6 @@ imports/fbbt_import.owl: mirror/fbbt.owl imports/fbbt_terms_combined.txt query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru --update $(SPARQLDIR)/remove_axioms.ru \ annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi -imports/cl_import.owl: mirror/cl.owl imports/cl_terms_combined.txt - if [ $(IMP) = true ]; then $(ROBOT) query -i $< --update ../sparql/preprocess-module.ru \ - extract -T imports/cl_terms_combined.txt --force true --copy-ontology-annotations true --individuals include --method BOT \ - remove --select "" --axioms annotation --signature true \ - remove --select "" --axioms annotation --signature true \ - query --update ../sparql/inject-subset-declaration.ru --update ../sparql/postprocess-module.ru \ - annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) --output $@.tmp.owl && mv $@.tmp.owl $@; fi - -.PRECIOUS: imports/%_import.owl - -# TODO - use full taxonomy -#ncbitaxon.owl: -# OWLTOOLS_MEMORY=14G owltools $(URIBASE)/ncbitaxon.owl -o $@ && touch $@ -## owltools $(URIBASE)/ncbitaxon/subsets/taxslim-disjoint-over-in-taxon.owl --merge-import-closure --make-subset-by-properties -f RO:0002162 // --split-ontology -d null -l cl go caro --remove-imports-declarations --set-ontology-id $(URIBASE)/$@ -o $@ - - -imports/ncbitaxon_import.owl: mirror/ncbitaxon.obo $(TMPDIR)/seed.owl $(TMPDIR)/composite-stages.obo - if [ $(IMP) = true ]; then $(OWLTOOLS) --map-ontology-iri $(ONTBASE)/$@ $< $(TMPDIR)/seed.owl $(TMPDIR)/composite-stages.obo --merge-support-ontologies --extract-module -s $(URIBASE)/ncbitaxon.owl -c --extract-mingraph --remove-dangling-annotations --create-taxon-disjoint-over-in-taxon -s -r NCBITaxon:2759 -m --set-ontology-id -v $(RELEASE)/$@ $(ONTBASE)/$@ -o $@; fi - # CL - take **everything** imports/cl_import.owl: $(TMPDIR)/cl-core.obo $(OWLSRC) if [ $(IMP) = true ]; then $(OWLTOOLS) $< --set-ontology-id -v $(RELEASE)/$@ $(ONTBASE)/$@ -o $@; fi @@ -497,9 +427,6 @@ imports/cl_import.owl: $(TMPDIR)/cl-core.obo $(OWLSRC) %_import.obo: %_import.owl if [ $(IMP) = true ]; then $(OWLTOOLS_NO_CAT) $< --add-obo-shorthand-to-properties -o -f obo --no-check $@; fi -imports: imports/pato_import.obo imports/chebi_import.obo imports/pr_import.obo imports/ncbitaxon_import.obo imports/cl_import.obo imports/go_import.obo imports/ro_import.obo - echo "STRONG WARNING: THIS GOAL HARDBAKES THE FOLLOWING IMPORTS AND COULD BE INCOMPLETE: $^" && touch $@ - # ---------------------------------------- # MARKDOWN EXPORT # ---------------------------------------- @@ -734,9 +661,8 @@ extra-full-bridge-checks: $(patsubst %,$(REPORTDIR)/extra-full-bridge-check-%.tx ##$(REPORTDIR)/bfo-check.txt: $(TMPDIR)/uberon-edit-plus-tax-equivs.owl # TODO @cmungall: worth fixing! # TODO @matentzn: use ROBOT merge instead and dump debug modules.. -$(REPORTDIR)/bfo-check.txt: $(OWLSRC) $(CATALOG_DYNAMIC) - echo "STRONG WARNING: check $@ FAIL currently!" - $(OWLTOOLS_CAT_DYNAMIC) $(URIBASE)/bfo.owl $(URIBASE)/ro.owl $< $(BRIDGEDIR)/uberon-bridge-to-bfo.owl --merge-support-ontologies -o $(REPORTDIR)/bfo-check.owl $(QELK) --run-reasoner -r elk -u > $@.tmp +$(REPORTDIR)/bfo-check.txt: $(OWLSRC) mirror/ro.owl mirror/bfo.owl + $(ROBOT) merge -i $(OWLSRC) -I $(URIBASE)/bfo.owl -I $(URIBASE)/ro.owl -i $(BRIDGEDIR)/uberon-bridge-to-bfo.owl reason --reasoner ELK --equivalent-classes-allowed asserted-only bfo-basic-check.txt: basic.owl $(CATALOG_DYNAMIC) $(OWLTOOLS_CAT_DYNAMIC) $(URIBASE)/bfo.owl $< $(BRIDGEDIR)/uberon-bridge-to-bfo.owl --merge-support-ontologies $(QELK) --run-reasoner -r elk -u > $@.tmp && mv $@.tmp $@ @@ -804,6 +730,10 @@ $(TMPDIR)/ext-merged-%.owl: ext.owl $(BRIDGEDIR)/bridges $(TMPDIR)/external-disj # check for dangling classes # TODO: add to Oort + +merged.obo: tmp/merged.owl + cp $< $@ + $(REPORTDIR)/%-orphans: %.obo $(SCRIPTSDIR)/obo-grep.pl --neg -r "(is_a|intersection_of|is_obsolete):" $< | $(SCRIPTSDIR)/obo-grep.pl -r Term - | $(SCRIPTSDIR)/obo-grep.pl --neg -r "id: UBERON:(0001062|0000000)" - | $(SCRIPTSDIR)/obo-grep.pl -r Term - > $@.tmp && (egrep '^(id|name):' $@.tmp > $@ || echo ok) @@ -1311,6 +1241,7 @@ ext-xref-conflict2.obo: echo "STRONG WARNING: $@ skipped, because there is no more blip." && touch $@ #blip-findall -r pext -r ZFA -i pe/tao-obsoletions.obo "entity_xref(Z,T),entity_replaced_by(T,U),\+id_idspace(Z,'UBERON'),id_idspace(U,'UBERON'),entity_xref(Ux,Z),id_idspace(Ux,'UBERON'),Ux\=U" -select "x(U,Z,Ux)" -label > $@ +.PHONY: release-diff release-diff: cd diffs && make all @@ -1320,18 +1251,26 @@ release-diff: #RELDIR=../.. +.PHONY: uberon +uberon: + $(MAKE) prepare_release IMP=false PAT=false BRI=true CLEANFILES=tmp/merged-uberon-edit.obo + $(MAKE) copy_additional_files # Probably not needed anymore now that we put everything on GitHub + $(MAKE) release-diff + $(MAKE) deploy_release GHVERSION="v$(TODAY)" --generate-notes -prepare_release: release-diff -# TODO @matentzn. Verify removal of following -# cp composite-brain.{obo,owl} $(RELDIR) ;\ - -prepare_release: copy_additional_files - +.PHONY: copy_additional_files copy_additional_files: rm -rf ../../bridge mkdir -p ../../bridge cp $(TMPDIR)/external-disjoints.owl ../../bridge/ ;\ cp $(COMPONENTSDIR)/external-disjoints.obo ../../bridge/ + # TODO @matentzn. Verify removal of following + # cp composite-brain.{obo,owl} $(RELDIR) ;\ + +deploy_release: + @test $(GHVERSION) + ls -alt $(ASSETS) + gh release create $(GHVERSION) --notes "TBD." --title "$(GHVERSION)" --draft $(ASSETS) #S3CMD = s3cmd -c ~/.s3cfg.go-push --acl-public --reduced-redundancy @@ -1771,9 +1710,6 @@ $(TMPDIR)/external-disjoints.owl: components/external-disjoints.obo $(ROBOT) convert -i $< -f owl -o $@ .PRECIOUS: $(TMPDIR)/external-disjoints.owl -$(BRIDGEDIR)/uberon-bridge-to-nifstd.obo: - echo "STRONG WARNING make $@ failed, because xref-to-equiv.pl script is missing!" && touch $@ - TEMPLATESDIR=templates TEMPLATES=$(patsubst %.tsv, $(TEMPLATESDIR)/%.owl, $(notdir $(wildcard $(TEMPLATESDIR)/*.tsv))) @@ -1813,10 +1749,6 @@ feature_diff: reports/robot_main_diff.md ######################## #### Utility commands ## -.PHONY: bless-mirrors -bless-mirrors: - touch go.owl chebi.owl mirror/ncbitaxon.obo - .PHONY: quick-qc quick-qc: tmp/core.owl $(REPORTDIR)/uberon-edit-obscheck.txt cat $(REPORTDIR)/uberon-edit-obscheck.txt @@ -1830,7 +1762,7 @@ normalize: $(TMPDIR)/NORMALIZE.obo mv $< $(SRC) echo "WARNING: $(SRC) has been overwritten! Please carefully check your diff before you commit!" -clean: +clean_uberon: rm -rf ./*.tmp rm -rf ./*.tmp1 rm -rf ./*.tmp2 @@ -1841,6 +1773,7 @@ clean: rm -f uberon.owl uberon.obo tmp/core.owl BUILDLOGUBERON.txt unsat_all_explanation.md rm -f ext.owl +clean: clean_uberon explain: $(ROBOT) explain --input $(TMPDIR)/unreasoned-composite-metazoan.owl --reasoner ELK \ @@ -1867,9 +1800,6 @@ cl_mondo_merged.owl: reports/composite-metazoan-dv.txt: echo "ERROR ERROR WARNING ERROR: $@ currently fails!" && touch $@ -subsets/life-stages-composite.obo: - echo "ERROR ERROR WARNING ERROR: $@ currently fails!" && touch $@ - OLDLOCATION=http://svn.code.sf.net/p/obo/svn/uberon/releases/2020-09-16 diffr-%: $(ROBOT) diff --left-iri $(OLDLOCATION)/$* --right ../../$* -o diff_$(shell echo $* | tr -cd '[:alnum:]._-').txt @@ -1956,9 +1886,6 @@ test_obsolete: test: test_obsolete -update_docs: - mkdocs build --config-file ../../mkdocs.yaml - .PHONY: test_owlaxioms test_owlaxioms: ! grep "owl-axioms: " uberon-edit.obo diff --git a/uberon.obo b/uberon.obo index 4c18a44d32..bee6b01933 100644 --- a/uberon.obo +++ b/uberon.obo @@ -1,6 +1,7 @@ format-version: 1.2 -data-version: releases/2022-02-21 +data-version: releases/2022-03-31 subsetdef: 1_STAR "" +subsetdef: 2_STAR "" subsetdef: 3_STAR "" subsetdef: abnormal_slim "" subsetdef: added_for_HCA "" @@ -68,7 +69,6 @@ subsetdef: pheno_slim "" subsetdef: pheno_slim "Phenotype slim" subsetdef: phenotype_rcn "" subsetdef: phenotype_rcn "A subset specifically created for the 2012 Phenotype RCN meeting. Includes some human-specific terms that may eventually be removed when they are adequately represented with part of relationships in FMA" -subsetdef: relational_slim "" subsetdef: ro-eco "" subsetdef: RO:0002259 "" subsetdef: scalar_slim "" @@ -2320,6 +2320,8 @@ id: CL:0000034 name: stem cell namespace: cell def: "A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [] +comment: This term applies to metazoan. For plant stem cells, consider using PO:0004011 ‘initial cell’ or its parent PO:0004010 ‘meristematic cell’. +synonym: "animal stem cell" EXACT [] xref: CALOHA:TS-2086 xref: FMA:63368 is_a: CL:0011115 ! precursor cell @@ -2338,6 +2340,7 @@ is_a: CL:0000723 ! somatic stem cell id: CL:0000036 name: epithelial fate stem cell namespace: cell +synonym: "epithelial stem cell" EXACT [] is_a: CL:0000035 ! single fate stem cell [Term] @@ -2402,6 +2405,7 @@ xref: FMA:83553 is_a: CL:0000763 ! myeloid cell is_a: CL:0002194 ! monopoietic cell relationship: develops_from CL:0002009 ! macrophage dendritic cell progenitor +relationship: has_part CL:0017503 ! basophilic cytoplasm [Term] id: CL:0000041 @@ -3008,6 +3012,7 @@ synonym: "polynuclear neutrophilic leukocyte" EXACT [] xref: BTO:0003473 is_a: CL:0000234 ! phagocyte is_a: CL:0000775 ! neutrophil +relationship: has_part CL:0017500 ! neutrophillic cytoplasm [Term] id: CL:0000097 @@ -3090,7 +3095,7 @@ is_a: CL:0000099 ! interneuron id: CL:0000104 name: multipolar neuron namespace: cell -def: "Neuron with an axon and two or more dendrites." [] +def: "A neuron with three or more neurites, usually an axon and multiple dendrites." [] subset: BDS_subset xref: FMA:67287 is_a: CL:0000540 ! neuron @@ -3958,7 +3963,7 @@ relationship: develops_from CL:0000857 ! slow muscle myoblast id: CL:0000190 name: fast muscle cell namespace: cell -def: "A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron ." [] +def: "A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron." [] synonym: "glycolytic muscle fiber" EXACT [] is_a: CL:0008046 ! extrafusal muscle fiber relationship: develops_from CL:0000858 ! fast muscle myoblast @@ -3970,7 +3975,7 @@ namespace: cell alt_id: CL:0000191 def: "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [] synonym: "myocytes, smooth muscle" EXACT [] -synonym: "non-striated muscle cell" NARROW [] +synonym: "non-striated muscle cell" BROAD [] synonym: "SMCs" EXACT [] synonym: "smooth muscle fiber" EXACT [] xref: BTO:0004576 @@ -4151,12 +4156,9 @@ is_a: CL:0000215 ! barrier cell id: CL:0000214 name: synovial cell namespace: cell -def: "A meso-epithelial cell that lies between the cartilaginous fibers in the synovial membrane of a joint and produces hyaluronic acid." [] -synonym: "hyaluronic acid secreting cell" NARROW [] +def: "A cell located in the synovial joint." [] synonym: "synoviocyte" EXACT [] -xref: BTO:0003652 xref: CALOHA:TS-0995 -xref: FMA:66786 is_a: CL:0000153 ! glycosaminoglycan secreting cell is_a: CL:0000213 ! lining cell is_a: CL:0002078 ! meso-epithelial cell @@ -4428,6 +4430,7 @@ is_a: CL:0000079 ! stratified epithelial cell id: CL:0000241 name: stratified cuboidal epithelial cell namespace: cell +is_a: CL:0000075 ! columnar/cuboidal epithelial cell is_a: CL:0000079 ! stratified epithelial cell [Term] @@ -4988,9 +4991,10 @@ is_a: CL:0000151 ! secretory cell [Term] id: CL:0000315 -name: tears secreting cell +name: tear secreting cell namespace: cell def: "A cell secreting tears, the fluid secreted by the lacrimal glands. This fluid moistens the conjunctiva and cornea." [] +synonym: "tears secreting cell" EXACT [] is_a: CL:0000152 ! exocrine cell [Term] @@ -5269,7 +5273,6 @@ is_a: CL:0002371 ! somatic cell id: CL:0000350 name: amnioserosal cell namespace: cell -is_a: CL:0000066 ! epithelial cell is_a: CL:0000349 ! extraembryonic cell [Term] @@ -5339,7 +5342,7 @@ is_a: CL:0000192 ! smooth muscle cell id: CL:0000359 name: vascular associated smooth muscle cell namespace: cell -def: "A smooth muscle cell assocatiated with the vasculature." [] +def: "A smooth muscle cell associated with the vasculature." [] synonym: "vascular smooth muscle cell" EXACT [] synonym: "VSMC" EXACT [] is_a: CL:0000192 ! smooth muscle cell @@ -5414,7 +5417,7 @@ id: CL:0000367 name: sheath cell (sensu Nematoda) namespace: cell synonym: "glial cell (sensu Nematoda)" RELATED [] -is_a: CL:0000619 ! support cell (sensu Nematoda) +is_a: CL:0000619 ! supporting cell (sensu Nematoda) [Term] id: CL:0000368 @@ -5488,8 +5491,9 @@ is_a: CL:0000069 ! branched duct epithelial cell [Term] id: CL:0000378 -name: support cell (sensu Nematoda and Protostomia) +name: supporting cell (sensu Nematoda and Protostomia) namespace: cell +synonym: "support cell (sensu Nematoda and Protostomia)" EXACT [] is_a: CL:0000630 ! supporting cell [Term] @@ -5504,7 +5508,7 @@ name: thecogen cell namespace: cell def: "The support cell that makes the thecogen dendritic cap - a cuticle-like matrix around the tip of the eo-dendrite and which encloses the soma of the eo-neuron." [] synonym: "fly sheath cell" EXACT [] -is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) +is_a: CL:0000378 ! supporting cell (sensu Nematoda and Protostomia) [Term] id: CL:0000381 @@ -5519,7 +5523,7 @@ id: CL:0000382 name: scolopale cell namespace: cell xref: FBbt:00005219 -is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) +is_a: CL:0000378 ! supporting cell (sensu Nematoda and Protostomia) [Term] id: CL:0000383 @@ -5572,7 +5576,7 @@ is_a: CL:0000386 ! attachment cell id: CL:0000389 name: socket cell (sensu Nematoda) namespace: cell -is_a: CL:0000619 ! support cell (sensu Nematoda) +is_a: CL:0000619 ! supporting cell (sensu Nematoda) is_a: CL:0000658 ! cuticle secreting cell [Term] @@ -5949,7 +5953,6 @@ id: CL:0000439 name: prolactin secreting cell namespace: cell def: "A peptide hormone cell that secretes prolactin." [] -is_a: CL:0000154 ! protein secreting cell is_a: CL:0000167 ! peptide hormone secreting cell [Term] @@ -6827,6 +6830,8 @@ xref: VHOG:0001535 is_a: CL:0000842 ! mononuclear cell disjoint_from: CL:0000766 ! myeloid leukocyte relationship: develops_from CL:0000051 ! common lymphoid progenitor +relationship: has_part CL:0017500 ! neutrophillic cytoplasm +relationship: has_part CL:0017505 ! increased nucleus size [Term] id: CL:0000543 @@ -6892,6 +6897,8 @@ xref: FMA:83518 is_a: CL:0000764 ! erythroid lineage cell is_a: CL:0002242 ! nucleate cell relationship: develops_from CL:0000038 ! erythroid progenitor cell +relationship: has_part CL:0017503 ! basophilic cytoplasm +relationship: has_part CL:0017505 ! increased nucleus size [Term] id: CL:0000548 @@ -6911,6 +6918,7 @@ synonym: "early normoblast" EXACT [] synonym: "prorubricyte" EXACT [] xref: FMA:83505 is_a: CL:0000765 ! erythroblast +relationship: has_part CL:0017503 ! basophilic cytoplasm [Term] id: CL:0000550 @@ -6926,6 +6934,7 @@ synonym: "rubricyte" EXACT [] xref: FMA:83506 is_a: CL:0000765 ! erythroblast relationship: develops_from CL:0000549 ! basophilic erythroblast +relationship: has_part CL:0017504 ! polychromatophilic cytoplasm [Term] id: CL:0000551 @@ -6946,6 +6955,7 @@ synonym: "pyknotic eto enrythroblast" EXACT [] xref: FMA:84646 is_a: CL:0000765 ! erythroblast relationship: develops_from CL:0000550 ! polychromatophilic erythroblast +relationship: has_part CL:0017502 ! acidophilic cytoplasm [Term] id: CL:0000553 @@ -7053,18 +7063,18 @@ synonym: "rod neutrophil" EXACT [] synonym: "stab cell" BROAD [] is_a: CL:0000096 ! mature neutrophil relationship: develops_from CL:0000582 ! neutrophilic metamyelocyte +relationship: has_part CL:0017506 ! banded nucleus [Term] id: CL:0000561 name: amacrine cell namespace: cell def: "Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer. They lack large axons." [] -comment: Not clear if this term overlaps with retinal bipolar neuron (CL:0000748). synonym: "amacrine neuron" EXACT [] xref: BTO:0004044 -xref: FBbt:00005127 xref: FMA:67766 is_a: CL:0000099 ! interneuron +is_a: CL:0009004 ! retinal cell [Term] id: CL:0000562 @@ -7258,6 +7268,7 @@ xref: FMA:83540 is_a: CL:0000776 ! immature neutrophil is_a: CL:0002087 ! nongranular leukocyte is_a: CL:0002193 ! myelocyte +relationship: has_part CL:0017502 ! acidophilic cytoplasm [Term] id: CL:0000581 @@ -7280,6 +7291,8 @@ xref: FMA:84197 is_a: CL:0000776 ! immature neutrophil is_a: CL:0002192 ! metamyelocyte relationship: develops_from CL:0000580 ! neutrophilic myelocyte +relationship: has_part CL:0017502 ! acidophilic cytoplasm +relationship: has_part CL:0017507 ! reniform nucleus [Term] id: CL:0000583 @@ -7626,9 +7639,10 @@ is_a: CL:0000075 ! columnar/cuboidal epithelial cell [Term] id: CL:0000619 -name: support cell (sensu Nematoda) +name: supporting cell (sensu Nematoda) namespace: cell -is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) +synonym: "support cell (sensu Nematoda)" EXACT [] +is_a: CL:0000378 ! supporting cell (sensu Nematoda and Protostomia) [Term] id: CL:0000620 @@ -7700,6 +7714,7 @@ name: olfactory granule cell namespace: cell def: "Granule cell that is part of the olfactory bulb." [] is_a: CL:0000120 ! granule cell +is_a: CL:0012001 ! neuron of the forebrain [Term] id: CL:0000627 @@ -7726,9 +7741,9 @@ is_a: CL:0000325 ! stuff accumulating cell [Term] id: CL:0000630 name: supporting cell -name: supportive cell namespace: cell def: "A cell whose primary function is to support other cell types." [] +synonym: "supportive cell" EXACT [] xref: BTO:0002315 is_a: CL:0000003 ! native cell @@ -7755,7 +7770,6 @@ xref: BTO:0002741 xref: CALOHA:TS-0452 xref: FMA:67763 is_a: CL:0000057 ! fibroblast -is_a: CL:0000152 ! exocrine cell is_a: CL:0000327 ! extracellular matrix secreting cell [Term] @@ -8169,7 +8183,7 @@ id: CL:0000676 name: cap cell namespace: cell xref: BTO:0001033 -is_a: CL:0000378 ! support cell (sensu Nematoda and Protostomia) +is_a: CL:0000378 ! supporting cell (sensu Nematoda and Protostomia) [Term] id: CL:0000677 @@ -8509,10 +8523,12 @@ is_a: CL:0000735 ! lymph gland hemocyte [Term] id: CL:0000717 -name: fusimotor neuron +name: obsolete fusimotor neuron namespace: cell -def: "A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons." [] -is_a: CL:0008039 ! lower motor neuron +def: "OBSOLETE. A subset of motor neurons that innervates intrafusal muscle fibers and has small diameter axons." [] +comment: Term merged into CL:0008037. Refer to https://github.com/obophenotype/cell-ontology/issues/1364 +is_obsolete: true +replaced_by: CL:0008037 [Term] id: CL:0000718 @@ -8950,7 +8966,10 @@ def: "Any of the immature forms of a basophil, in which basophilic specific gran synonym: "immature basophilic leucocyte" EXACT [] synonym: "immature basophilic leukocyte" EXACT [] is_a: CL:0000767 ! basophil +intersection_of: CL:0000767 ! basophil +intersection_of: has_part CL:0017509 ! alobate nucleus relationship: develops_from CL:0000830 ! basophilic promyelocyte +relationship: has_part CL:0017509 ! alobate nucleus [Term] id: CL:0000769 @@ -8961,6 +8980,7 @@ xref: FMA:84198 is_a: CL:0000768 ! immature basophil is_a: CL:0002192 ! metamyelocyte relationship: develops_from CL:0000614 ! basophilic myelocyte +relationship: has_part CL:0017507 ! reniform nucleus [Term] id: CL:0000770 @@ -8968,7 +8988,10 @@ name: band form basophil namespace: cell def: "A late basophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature basophil." [] is_a: CL:0000768 ! immature basophil +intersection_of: CL:0000768 ! immature basophil +intersection_of: has_part CL:0017506 ! banded nucleus relationship: develops_from CL:0000769 ! basophilic metamyelocyte +relationship: has_part CL:0017506 ! banded nucleus [Term] id: CL:0000771 @@ -8996,7 +9019,10 @@ synonym: "immature eosinocyte" EXACT [] synonym: "immature eosinophilic leucocyte" EXACT [] synonym: "immature eosinophilic leukocyte" EXACT [] is_a: CL:0000771 ! eosinophil +intersection_of: CL:0000771 ! eosinophil +intersection_of: has_part CL:0017509 ! alobate nucleus relationship: develops_from CL:0000833 ! eosinophilic promyelocyte +relationship: has_part CL:0017509 ! alobate nucleus [Term] id: CL:0000773 @@ -9006,6 +9032,8 @@ def: "A eosinophil precursor in the granulocytic series, being a cell intermedia is_a: CL:0000772 ! immature eosinophil is_a: CL:0002192 ! metamyelocyte relationship: develops_from CL:0000612 ! eosinophilic myelocyte +relationship: has_part CL:0017502 ! acidophilic cytoplasm +relationship: has_part CL:0017507 ! reniform nucleus [Term] id: CL:0000774 @@ -9013,7 +9041,10 @@ name: band form eosinophil namespace: cell def: "A late eosinophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature eosinophil." [] is_a: CL:0000772 ! immature eosinophil +intersection_of: CL:0000772 ! immature eosinophil +intersection_of: has_part CL:0017506 ! banded nucleus relationship: develops_from CL:0000773 ! eosinophilic metamyelocyte +relationship: has_part CL:0017506 ! banded nucleus [Term] id: CL:0000775 @@ -9048,7 +9079,10 @@ synonym: "immature neutrophil leucocyte" EXACT [] synonym: "immature neutrophil leukocyte" EXACT [] synonym: "immature neutrophilic leucocyte" EXACT [] is_a: CL:0000775 ! neutrophil +intersection_of: CL:0000775 ! neutrophil +intersection_of: has_part CL:0017509 ! alobate nucleus relationship: develops_from CL:0000564 ! neutrophilic promyelocyte +relationship: has_part CL:0017509 ! alobate nucleus [Term] id: CL:0000777 @@ -9170,6 +9204,7 @@ xref: BTO:0000392 xref: FMA:70574 is_a: CL:0000946 ! antibody secreting cell relationship: develops_from CL:0000980 ! plasmablast +relationship: has_part CL:0017508 ! cartwheel heterochromatin [Term] id: CL:0000787 @@ -9813,6 +9848,8 @@ xref: FMA:83524 is_a: CL:0000763 ! myeloid cell is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000557 ! granulocyte monocyte progenitor cell +relationship: has_part CL:0017503 ! basophilic cytoplasm +relationship: has_part CL:0017505 ! increased nucleus size [Term] id: CL:0000836 @@ -9824,6 +9861,8 @@ xref: FMA:83530 is_a: CL:0000763 ! myeloid cell is_a: CL:0002191 ! granulocytopoietic cell relationship: develops_from CL:0000835 ! myeloblast +relationship: has_part CL:0017503 ! basophilic cytoplasm +relationship: has_part CL:0017505 ! increased nucleus size [Term] id: CL:0000837 @@ -10011,17 +10050,19 @@ disjoint_from: CL:0000855 ! sensory hair cell [Term] id: CL:0000852 -name: neuromast support cell +name: neuromast supporting cell namespace: cell def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." [] +synonym: "neuromast support cell" EXACT [] is_a: CL:0000630 ! supporting cell disjoint_from: CL:0000855 ! sensory hair cell [Term] id: CL:0000853 -name: olfactory epithelial support cell +name: olfactory epithelial supporting cell namespace: cell def: "Olfactory epithelial support cell is a columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium. This cell type has a large, vertically, elongate, euchromatic nucleus, along with other nuclei, forms a layer superficial to the cell body of the receptor cell; sends long somewhat irregular microvilli into the mucus layer; at the base, with expanded end-feet containing numerous lamellated dense bodies resembling lipofuscin of neurons." [] +synonym: "olfactory epithelial support cell" EXACT [] synonym: "olfactory sustentacular cell" EXACT [] synonym: "supporting cell of olfactory epithelium" EXACT [] synonym: "sustentaculocyte of olfactory epithelium" EXACT [] @@ -11921,6 +11962,8 @@ name: cortical granule cell namespace: cell def: "Granule cell that is part of the cerebral cortex." [] is_a: CL:0000120 ! granule cell +is_a: CL:0010012 ! cerebral cortex neuron +is_a: CL:0012001 ! neuron of the forebrain [Term] id: CL:0001033 @@ -11928,7 +11971,6 @@ name: hippocampal granule cell namespace: cell def: "Granule cell that is part of the hippocampus." [] is_a: CL:0001032 ! cortical granule cell -is_a: CL:0002608 ! hippocampal neuron [Term] id: CL:0001034 @@ -12228,6 +12270,7 @@ synonym: "CD8+ TEMRA" EXACT [] synonym: "CD8-positive TEMRA" EXACT [] synonym: "TEMRA" BROAD [] is_a: CL:0000909 ! CD8-positive, alpha-beta memory T cell +is_a: CL:4030002 ! effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated relationship: develops_from CL:0000913 ! effector memory CD8-positive, alpha-beta T cell [Term] @@ -12414,6 +12457,7 @@ synonym: "CD4+ TEMRA" EXACT [] synonym: "CD4-positive TEMRA" EXACT [] synonym: "TEMRA" BROAD [] is_a: CL:0000897 ! CD4-positive, alpha-beta memory T cell +is_a: CL:4030002 ! effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated property_value: dc-creator http://orcid.org/0000-0001-9990-8331 relationship: develops_from CL:0000905 ! effector memory CD4-positive, alpha-beta T cell @@ -14493,7 +14537,6 @@ xref: KUPO:0001033 is_a: CL:0000650 ! mesangial cell is_a: CL:1000500 ! kidney interstitial cell is_a: CL:1000618 ! juxtaglomerular complex cell -is_a: CL:1000746 ! glomerular cell is_a: CL:1001318 ! renal interstitial pericyte created_by: tmeehan creation_date: 2010-08-25T02:20:55Z @@ -14577,10 +14620,11 @@ creation_date: 2010-08-25T03:38:51Z [Term] id: CL:0002181 -name: mucus neck cell of gastric gland +name: mucous neck cell of gastric gland namespace: cell alt_id: CL:1000401 def: "A neck cell that secretes mucus within the stomach. Its products are distinct histochemically from those of the surface mucous cells of stomach." [] +synonym: "mucus neck cell of gastric gland" EXACT [] xref: FMA:62954 is_a: CL:0000152 ! exocrine cell is_a: CL:0000651 ! mucous neck cell @@ -14786,8 +14830,11 @@ creation_date: 2010-09-02T11:33:26Z id: CL:0002201 name: renal beta-intercalated cell namespace: cell -def: "A renal intercalated cell that secretes base and reabsorbs acid in the coritcal collecting duct to mantain acid/base balance." [] -is_a: CL:0005010 ! renal intercalated cell +def: "A renal intercalated cell that secretes base and reabsorbs acid in the distal segments of the kidney tubule to maintain acid/base balance." [] +synonym: "type B intercalated cell" EXACT [] +synonym: "type B-IC" EXACT [] +is_a: CL:1000507 ! kidney tubule cell +is_a: CL:1001432 ! kidney collecting duct intercalated cell created_by: tmeehan creation_date: 2010-09-02T01:43:55Z @@ -15971,7 +16018,11 @@ creation_date: 2010-09-13T03:23:25Z id: CL:0002301 name: type B synovial cell namespace: cell -def: "A synovial cell type that resembles fibroblasts, has abundant granular endoplasmic reticulum but contains fewer vacuoles and vesicles. This cell type secretes glycoproteins and hyaluronic acid." [] +def: "A resident stromal cell located in the synovial membrane and responsible for the production of immune-related cytokines and chemokines. This cell type secretes glycoproteins and hyaluronic acid, has abundant granular endoplasmic reticulum, but contains fewer vacuoles and vesicles." [] +comment: Type B synovial cells play a key role in the pathogenesis of chronic inflammatory diseases, such as rheumatoid arthritis, and are essential for the maintenance of normal joint functions. Fibroblast-like synoviocytes from different joints have different properties, which may contribute to the characteristic pattern of joint involvement in different types of arthritis. +synonym: "fibroblast-like synoviocyte" EXACT [] +synonym: "synovial fibroblast" EXACT [] +xref: BTO:0003652 xref: FMA:66788 is_a: CL:0000214 ! synovial cell created_by: tmeehan @@ -15982,9 +16033,11 @@ id: CL:0002302 name: type A synovial cell namespace: cell def: "A synovial cell that is macrophage-like, characterized by surface ruffles or lamellipodia, plasma membrane invaginations and associated micropinocytotic vesicles, Golgi apparatus and little granular endoplasmic reticulum." [] +comment: Type A cells are usually round and located in the upper part of the synovial intima. synonym: "type A synoviocyte" EXACT [] xref: FMA:66787 is_a: CL:0000214 ! synovial cell +is_a: CL:0000234 ! phagocyte created_by: tmeehan creation_date: 2010-09-13T03:39:17Z @@ -16147,7 +16200,7 @@ namespace: cell def: "An epithelial supporting cell located in the cochlea." [] xref: FMA:79796 is_a: CL:0001035 ! bone cell -is_a: CL:0005014 ! auditory epithelial support cell +is_a: CL:0005014 ! auditory epithelial supporting cell created_by: tmeehan creation_date: 2010-09-14T03:31:38Z @@ -16157,7 +16210,7 @@ name: supporting cell of vestibular epithelium namespace: cell def: "A supporting cell of the vestibular epithelium." [] xref: FMA:75607 -is_a: CL:0005014 ! auditory epithelial support cell +is_a: CL:0005014 ! auditory epithelial supporting cell created_by: tmeehan creation_date: 2010-09-14T03:31:44Z @@ -16173,7 +16226,7 @@ creation_date: 2010-09-14T03:33:50Z [Term] id: CL:0002318 -name: periperhal blood mesothelial cell +name: peripheral blood mesothelial cell namespace: cell def: "A mesothelial cell capable of circulating in the blood by first losing its squamous character. This cell can incorporate into the regenerating mesothelium." [] xref: FMA:86712 @@ -16271,6 +16324,8 @@ alt_id: CL:1000476 def: "The milk-producing cell of the alveolar unit that emerges during pregnancy." [] synonym: "epithelial cell of lactiferous gland" EXACT [] synonym: "luminal cell of alveolus of lactiferous gland" EXACT [] +synonym: "mammary alveolar epithelial cell" EXACT [] +synonym: "mammary gland alveolar epithelial cell" EXACT [] xref: FMA:74506 xref: FMA:79866 is_a: CL:0000314 ! milk secreting cell @@ -16565,7 +16620,6 @@ name: yolk sac hematopoietic stem cell namespace: cell def: "A hematopoietic stem found in the yolk sac. In mice, this cell type is Sca-1-negative, CD45-negative, MHC-negative, HSA-positive, AA4.1-positive, CD44-positive." [] synonym: "hemangioblast precursor" EXACT [] -is_a: CL:0000066 ! epithelial cell is_a: CL:0002352 ! gestational hematopoietic stem cell created_by: tmeehan creation_date: 2010-09-22T09:08:34Z @@ -17370,6 +17424,7 @@ name: CD4-intermediate, CD8-positive double-positive thymocyte namespace: cell def: "A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD4 co-receptor." [] synonym: "T.4int8+.Th" EXACT [] +synonym: "T_4int8+_Th" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte relationship: develops_from CL:0002429 ! CD69-positive double-positive thymocyte created_by: tmeehan @@ -17380,7 +17435,8 @@ id: CL:0002431 name: CD4-positive, CD8-intermediate double-positive thymocyte namespace: cell def: "A double-positive thymocyte that is undergoing positive selection, has high expression of the alpha-beta T cell receptor, is CD69-positive, and is in the process of down regulating the CD8 co-receptor." [] -synonym: "T.4int8+.th" EXACT [] +synonym: "T.4+8int.Th" EXACT [] +synonym: "T_4+8int_Th" EXACT [] is_a: CL:0000809 ! double-positive, alpha-beta thymocyte relationship: develops_from CL:0002429 ! CD69-positive double-positive thymocyte created_by: tmeehan @@ -17606,7 +17662,12 @@ creation_date: 2010-11-10T01:46:51Z id: CL:0002453 name: oligodendrocyte precursor cell namespace: cell -def: "The cell type from which oligodendrocytes develop. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [] +def: "A progenitor cell of the central nervous system that can differentiate into oligodendrocytes or type-2 astrocytes. This cell originates from multiple structures within the developing brain including the medial ganglion eminence and the lateral ganglionic eminence. These cells migrate throughout the central nervous system and persist into adulthood where they play an important role in remyelination of injured neurons." [] +comment: This cell type can be purified from optic nerves and other regions of the embryonic, postnatal and adult rat CNS and can be differentiated in vitro to oligodendrocytes and type-2 astrocytes. Some references use the terms 'oligodendrocyte precursor cell' and 'oligodendrocyte type-2 astrocyte (O-2A) progenitor' to refer to the same entity (e.g., PMID:10704434), while others describe an oligodendrocyte type-2 astrocyte (O-2A) progenitor cell as the precurosr to oligodendrocyte- and type-2 astrocyte- progenitor cells (e.g, ISBN:9780702028991). +synonym: "O-2A/OPC" BROAD [] +synonym: "O2A/OPC" BROAD [] +synonym: "oligodendrocyte-type 2 astrocyte (O-2A) progenitor cell" BROAD [] +synonym: "oligodendrocyte/type-2 astrocyte progenitor cell" BROAD [] is_a: CL:0000123 ! neuron associated cell (sensu Vertebrata) relationship: develops_from CL:0000339 ! glioblast (sensu Vertebrata) created_by: tmeehan @@ -18074,6 +18135,7 @@ id: CL:0002499 name: spongiotrophoblast cell namespace: cell def: "A trophoblast cell that arises in the junctional zone (basal plate) of the placenta." [] +synonym: "spongiotrophoblast" EXACT [] is_a: CL:0000351 ! trophoblast cell created_by: tmeehan creation_date: 2010-12-07T12:56:56Z @@ -18730,6 +18792,8 @@ id: CL:0002566 name: dark melanocyte namespace: cell def: "A melanocyte that appears darker due to content or amount of melanin granules." [] +synonym: "melanotic melanocyte" EXACT [] +synonym: "melanotic melanophore" EXACT [] is_a: CL:0000148 ! melanocyte created_by: tmeehan creation_date: 2011-03-01T05:57:11Z @@ -18739,6 +18803,8 @@ id: CL:0002567 name: light melanocyte namespace: cell def: "A melanocyte that appears lighter in color." [] +synonym: "amelanotic melanocyte" EXACT [] +synonym: "amelanotic melanophore" EXACT [] is_a: CL:0000148 ! melanocyte created_by: tmeehan creation_date: 2011-03-01T05:58:23Z @@ -18764,10 +18830,10 @@ creation_date: 2011-03-01T09:55:12Z [Term] id: CL:0002570 -name: mesenchymal stem cell of adipose name: mesenchymal stem cell of adipose tissue namespace: cell def: "A mesenchymal stem cell of adipose tissue." [] +synonym: "mesenchymal stem cell of adipose" EXACT [] is_a: CL:0000134 ! mesenchymal stem cell created_by: tmeehan creation_date: 2011-03-01T09:57:17Z @@ -19124,19 +19190,6 @@ is_a: CL:0000117 ! CNS neuron (sensu Vertebrata) created_by: tmeehan creation_date: 2011-03-06T07:31:49Z -[Term] -id: CL:0002609 -name: neuron of cerebral cortex -namespace: cell -def: "A CNS neuron of the cerebral cortex." [] -synonym: "cortical neuron" EXACT [] -xref: BTO:0004102 -xref: FMA:84104 -is_a: CL:0010012 ! cerebral cortex neuron -is_a: CL:0012001 ! neuron of the forebrain -created_by: tmeehan -creation_date: 2011-03-06T07:37:08Z - [Term] id: CL:0002610 name: raphe nuclei neuron @@ -19566,7 +19619,7 @@ name: endothelial cell of high endothelial venule namespace: cell def: "A venule endothelial cell that is cubodial, expresses leukocyte-specific receptors, and allows for passage of lymphocytes into bloodstream." [] comment: Markers expressed on HEV include: MAdCAM-1,PNAd (sulfated and glycosylated molecules, i.e. GlyCAM-1, CD34, endomucin, nepmucin), ICAM-1, ICAM-2,Fuc-TVII, beta 3GlcNAcT-3, GlcNAc6ST2,CCL21, CCL19, CXCL13, CXCL12, Autotaxin, DARC, angiomodulin, LRHG. -synonym: "endothelial cell of postcapillary venule of lymph node" EXACT [] +synonym: "endothelial cell of postcapillary venule of lymph node" BROAD [] synonym: "HEV cell" EXACT [] xref: FMA:67759 is_a: CL:0000075 ! columnar/cuboidal epithelial cell @@ -19972,6 +20025,7 @@ id: CL:0005010 name: renal intercalated cell namespace: cell def: "A cuboidal epithelial cell of the kidney that regulates acid/base balance." [] +comment: Intercalated cells are also called “mitochondria-rich cells”, reflecting the high levels of round mitochondria at their apical pole, or in their cytoplasm, a distribution that is quite different from that of other kidney tubule cells, which accumulated mitochondria around the basolateral membrane. These cells also have numerous irregular apical microvilli compared with the surrounding segment-specific cells. Intercalated cells lack a central cilium, at least in the cortex, which also differentiates them from the adjacent principal cells. synonym: "intercalated cell" EXACT [] xref: FMA:86560 is_a: CL:0000075 ! columnar/cuboidal epithelial cell @@ -19983,7 +20037,12 @@ id: CL:0005011 name: renal alpha-intercalated cell namespace: cell def: "A cuboidal epithelial cell of the kidney which secretes acid and reabsorbs base to regulate acid/base balance." [] -is_a: CL:0005010 ! renal intercalated cell +comment: Type A intercalated cells are the more abundant type of intercalated cell in the outer stripe of the outer medulla in most mammalian species. +synonym: "type A intercalated cell" EXACT [] +synonym: "type A-IC" EXACT [] +is_a: CL:1000768 ! kidney connecting tubule epithelial cell +is_a: CL:1000849 ! kidney distal convoluted tubule epithelial cell +is_a: CL:1001432 ! kidney collecting duct intercalated cell [Term] id: CL:0005012 @@ -20005,9 +20064,10 @@ is_a: CL:0000067 ! ciliated epithelial cell [Term] id: CL:0005014 -name: auditory epithelial support cell +name: auditory epithelial supporting cell namespace: cell def: "A non-sensory cell that extends from the basement membrane to the apical surface of the auditory epithelium and provides support for auditory hair cells." [] +synonym: "auditory epithelial support cell" EXACT [] is_a: CL:0000630 ! supporting cell is_a: CL:0000710 ! neurecto-epithelial cell is_a: CL:0002491 ! auditory epithelial cell @@ -20297,10 +20357,7 @@ id: CL:0007017 name: Stiftchenzellen def: "An epidermal cell with apical microvilli or a single apical projection have synaptic associations with nerve fibres in the epidermis." [] comment: Taxon specificity not yet fully known, but are known in anuran larvae but not in adults. -is_a: CL:0000006 ! neuronal receptor cell -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0000206 ! chemoreceptor cell -is_a: CL:0000362 ! epidermal cell created_by: haendel [Term] @@ -20308,8 +20365,7 @@ id: CL:0007018 name: epidermal ciliary cell def: "Ciliated cell of the embryonic epidermis and functions in embryonic movements." [] comment: Taxon specificity not clear -present in embryonic anurans. -is_a: CL:0000067 ! ciliated epithelial cell -is_a: CL:0000362 ! epidermal cell +is_a: CL:0000064 ! ciliated cell is_a: CL:0002321 ! embryonic cell (metazoa) created_by: haendel @@ -20331,6 +20387,7 @@ created_by: haendel id: CL:0007021 name: alarm substance cell def: "Secretory cell that produces a chemical mixture that triggers antipredator behavior. The substance is released only upon disruption of the epidermis. [Behavior of teleost fishes, second edition, edited by Pitcher, 1992]" [] +synonym: "alarm substance secreting cell" EXACT [] synonym: "club cell" RELATED [] synonym: "club cell (zebrafish)" EXACT [] is_a: CL:0000151 ! secretory cell @@ -20463,7 +20520,6 @@ name: inhibitory motor neuron def: "A motor neuron that is capable of directly inhibiting muscle contraction." [] comment: In vertebrates, all motor neurons are excitatory, but various types of inhibitory motor neurons exist in invertebrates. is_a: CL:0000100 ! motor neuron -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: CL:0008016 @@ -20629,6 +20685,7 @@ creation_date: 2020-03-02T08:45:06Z id: CL:0008037 name: gamma motor neuron def: "A lower motor neuron that innervates only intrafusal muscle fibers. Unlike the alpha motor neurons, gamma motor neurons do not directly adjust the lengthening or shortening of muscles but function in adjusting the sensitivity of muscle spindles and in keeping muscle spindles taut, thereby allowing the continued firing of alpha neurons." [] +synonym: "fusimotor neuron" EXACT [] xref: FMA:83660 xref: MESH:D009047 xref: SAO:143800623 @@ -20998,7 +21055,7 @@ subset: location_grouping synonym: "appendix mesothelial cell" EXACT [] synonym: "mesothelial cell of appendix vermiformis" EXACT [] synonym: "mesothelial cell of vermiform appendix" EXACT [] -is_a: CL:0009025 ! mesothelial cell of colon +is_a: CL:0000077 ! mesothelial cell is_a: CL:1000405 ! epithelial cell of appendix created_by: http://orcid.org/0000-0002-2825-0621 @@ -21499,6 +21556,86 @@ comment: There is growing evidence that molecular markers characterizing double is_a: CL:0002489 ! double negative thymocyte created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: CL:0009084 +name: epithelial cell of endometrial gland +def: "An epithelial cell that is part of an endometrial gland." [] +subset: location_grouping +synonym: "endometrial glandular epithelial cell" EXACT [] +xref: EFO:0010710 +is_a: CL:0000066 ! epithelial cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009086 +name: endothelial cell of respiratory system lymphatic vessel +def: "An endothelial cell that is part of a respiratory system lymphatic vessel." [] +subset: location_grouping +xref: EFO:0010667 +is_a: CL:0000115 ! endothelial cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009087 +name: fused extravillous trophoblast +def: "An extravillous trophoblast that is polynuclear." [] +synonym: "fused EVT" EXACT [] +xref: EFO:0010712 +is_a: CL:0008036 ! extravillous trophoblast +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009089 +name: lung pericyte +def: "A pericyte cell that is part of a lung." [] +subset: location_grouping +synonym: "lung pericyte cell" EXACT [] +synonym: "pulmonary pericyte" EXACT [] +xref: EFO:0010669 +is_a: CL:0000669 ! pericyte cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009092 +name: endothelial cell of placenta +def: "An endothelial cell that is part of a placenta." [] +subset: location_grouping +synonym: "placental endothelial cell" EXACT [] +xref: EFO:0010708 +is_a: CL:0000115 ! endothelial cell +is_a: CL:0002577 ! placental epithelial cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009093 +name: smooth muscle cell of placenta +def: "A smooth muscle cell that is part of a placenta." [] +subset: location_grouping +synonym: "placental smooth muscle cell" EXACT [] +xref: EFO:0010709 +is_a: CL:0000192 ! smooth muscle cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009094 +name: endothelial cell of hepatic portal vein +def: "An endothelial cell that is part of a hepatic portal vein." [] +subset: location_grouping +synonym: "portal endothelial cell" BROAD [] +xref: EFO:0010704 +is_a: CL:0000115 ! endothelial cell +created_by: http://orcid.org/0000-0002-2825-0621 + +[Term] +id: CL:0009095 +name: endothelial cell of uterus +def: "An endothelial cell that is part of a uterus." [] +subset: location_grouping +synonym: "uterine endothelial cell" EXACT [] +xref: EFO:0010711 +is_a: CL:0000115 ! endothelial cell +created_by: http://orcid.org/0000-0002-2825-0621 + [Term] id: CL:0010000 name: keratinized cell of hair follicle @@ -21575,20 +21712,29 @@ is_a: CL:0000287 ! eye photoreceptor cell id: CL:0010010 name: cerebellar stellate cell is_a: CL:0000122 ! stellate neuron +is_a: CL:1001611 ! cerebellar neuron [Term] id: CL:0010011 name: cerebral cortex GABAergic interneuron def: "A GABAergic interneuron whose soma is located in the cerebral cortex." [] is_a: CL:0000402 ! CNS interneuron -is_a: CL:0002609 ! neuron of cerebral cortex +is_a: CL:0010012 ! cerebral cortex neuron is_a: CL:0011005 ! GABAergic interneuron +is_a: CL:0012001 ! neuron of the forebrain [Term] id: CL:0010012 name: cerebral cortex neuron -def: "A neuron that is part_of a cerebral cortex." [] +namespace: cell +alt_id: CL:0002609 +def: "A CNS neuron of the cerebral cortex." [] +synonym: "cortical neuron" EXACT [] +synonym: "neuron of cerebral cortex" EXACT [] +xref: BTO:0004102 +xref: FMA:84104 is_a: CL:2000029 ! central nervous system neuron +property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:0010013 @@ -21881,8 +22027,12 @@ created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011030 name: dermal microvascular endothelial cell +def: "Any microvascular endothelial cell that is part of the dermis." [] +synonym: "dermal microvascular endothelium cell" EXACT [] +synonym: "DMEC cell" EXACT [] is_a: CL:2000008 ! microvascular endothelial cell is_a: CL:2000010 ! dermis blood vessel endothelial cell +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: CL:0011031 @@ -22069,6 +22219,86 @@ def: "A mesodermal cell that is part of the splanchnic layer of lateral plate me is_a: CL:0011010 ! lateral mesodermal cell property_value: dc-creator https://orcid.org/0000-0003-2473-2313 +[Term] +id: CL:0017500 +name: neutrophillic cytoplasm +namespace: cell +def: "Cytoplasm that exhibits a characteristic staining and color, pale-pink, with Wright-Giemsa stain." [] +created_by: tmeehan +creation_date: 2010-05-25T01:36:34Z + +[Term] +id: CL:0017501 +name: obsolete lobed nucleus +namespace: cell +def: "Nucleus with two or more lobes connected by a thin filament that contains no internal chromatin." [] +comment: Obsoleted because duplicate with GO term. +is_obsolete: true +replaced_by: http://purl.obolibrary.org/obo/GO_0098537 +created_by: tmeehan +creation_date: 2009-12-22T03:54:43Z + +[Term] +id: CL:0017502 +name: acidophilic cytoplasm +namespace: cell +def: "Cytoplasm that exhibits a characteristic staining and color, red or pink, with Eosin stain." [] +synonym: "eosinophilic" NARROW [] +created_by: tmeehan +creation_date: 2009-12-22T04:23:25Z + +[Term] +id: CL:0017503 +name: basophilic cytoplasm +namespace: cell +def: "Cytoplasm that exhibits molecular interaction for basic dyes under specific pH conditions." [] +created_by: tmeehan +creation_date: 2009-12-22T04:24:54Z + +[Term] +id: CL:0017504 +name: polychromatophilic cytoplasm +namespace: cell +def: "Cytoplasm that exhibits affinity for both basic and acid stains under specific pH conditions." [] +created_by: tmeehan +creation_date: 2009-12-28T04:25:23Z + +[Term] +id: CL:0017505 +name: increased nucleus size +namespace: cell +def: "A nucleus size quality which is relatively high compared to the amount of cytoplasm present in the same cell." [] +created_by: tmeehan +creation_date: 2009-12-23T10:53:24Z + +[Term] +id: CL:0017506 +name: banded nucleus +namespace: cell +def: "A concave nuclear shape where the nucleus is indented to more than half the distance to the farthest nuclear margin, but in no area is the chromatin condensed to a single filament." [] +created_by: tmeehan +creation_date: 2009-12-23T02:18:43Z + +[Term] +id: CL:0017507 +name: reniform nucleus +namespace: cell +def: "A concave nucleus shape where the indentation is smaller than half of the distance to the farthest nuclear margin." [] +created_by: tmeehan +creation_date: 2009-12-23T02:31:25Z + +[Term] +id: CL:0017508 +name: cartwheel heterochromatin +namespace: cell +def: "Heterochromatin that is arranged in a carthwheel pattern." [] +created_by: tmeehan +creation_date: 2009-12-28T04:28:35Z + +[Term] +id: CL:0017509 +name: alobate nucleus + [Term] id: CL:0019001 name: tracheobronchial serous cell @@ -22142,7 +22372,9 @@ property_value: dc-creator http://orcid.org/0000-0003-2034-601X id: CL:0019021 name: endothelial cell of periportal hepatic sinusoid def: "An endothelial cell found in the periportal region hepatic sinusoid, near the portal triad. The fenestrae of these cells are larger but fewer in number compared with those of endothelial cells near the centrilobular region of the hepatic sinusoid." [] +synonym: "periportal hepatic sinusoidal endothelial cell" EXACT [] synonym: "periportal LSEC" EXACT [] +xref: EFO:0010705 is_a: CL:1000398 ! endothelial cell of hepatic sinusoid property_value: dc-creator http://orcid.org/0000-0003-2034-601X @@ -22150,7 +22382,9 @@ property_value: dc-creator http://orcid.org/0000-0003-2034-601X id: CL:0019022 name: endothelial cell of pericentral hepatic sinusoid def: "An endothelial cell found in the centrilobular region hepatic sinusoid, near the central vein. The fenestrae of these cells are smaller but more numerous compared with those of endothelial cells near the periportal region of the hepatic sinusoid." [] +synonym: "central venous hepatic sinusoidal endothelial cell" EXACT [] synonym: "pericentral LSEC" EXACT [] +xref: EFO:0010706 is_a: CL:1000398 ! endothelial cell of hepatic sinusoid property_value: dc-creator http://orcid.org/0000-0003-2034-601X @@ -22204,6 +22438,7 @@ is_a: CL:2000029 ! central nervous system neuron [Term] id: CL:1000022 name: mesonephric nephron tubule epithelial cell +is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell [Term] @@ -22243,11 +22478,13 @@ is_a: CL:0000357 ! stratified epithelial stem cell [Term] id: CL:1000090 name: pronephric nephron tubule epithelial cell +is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell [Term] id: CL:1000123 name: metanephric nephron tubule epithelial cell +is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell [Term] @@ -23196,7 +23433,6 @@ name: type 1 vestibular sensory cell of stato-acoustic epithelium namespace: cell def: "A type I vestibular sensory cell that is part of the stato-acoustic epithelium." [] xref: FMA:263186 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002070 ! type I vestibular sensory cell [Term] @@ -23205,7 +23441,6 @@ name: type 1 vestibular sensory cell of epithelium of macula of utricle of membr namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [] xref: FMA:263188 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002070 ! type I vestibular sensory cell [Term] @@ -23214,7 +23449,6 @@ name: type 1 vestibular sensory cell of epithelium of macula of saccule of membr namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [] xref: FMA:263190 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002070 ! type I vestibular sensory cell [Term] @@ -23223,7 +23457,6 @@ name: type 1 vestibular sensory cell of epithelium of crista of ampulla of semic namespace: cell def: "A type I vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [] xref: FMA:263192 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002070 ! type I vestibular sensory cell [Term] @@ -23232,7 +23465,6 @@ name: type 2 vestibular sensory cell of stato-acoustic epithelium namespace: cell def: "A type II vestibular sensory cell that is part of the stato-acoustic epithelium." [] xref: FMA:263194 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002069 ! type II vestibular sensory cell [Term] @@ -23241,7 +23473,6 @@ name: type 2 vestibular sensory cell of epithelium of macula of utricle of membr namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of macula of utricle of membranous labyrinth." [] xref: FMA:263196 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002069 ! type II vestibular sensory cell [Term] @@ -23250,7 +23481,6 @@ name: type 2 vestibular sensory cell of epithelium of macula of saccule of membr namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of macula of saccule of membranous labyrinth." [] xref: FMA:263198 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002069 ! type II vestibular sensory cell [Term] @@ -23259,7 +23489,6 @@ name: type 2 vestibular sensory cell of epithelium of crista of ampulla of semic namespace: cell def: "A type II vestibular sensory cell that is part of the epithelium of crista of ampulla of semicircular duct of membranous labyrinth." [] xref: FMA:263200 -is_a: CL:0000098 ! sensory epithelial cell is_a: CL:0002069 ! type II vestibular sensory cell [Term] @@ -23654,6 +23883,7 @@ synonym: "epithelial cell of renal collecting tubule" EXACT [] xref: FMA:70982 xref: KUPO:0001059 is_a: CL:0000072 ! non-branched duct epithelial cell +is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1001225 ! kidney collecting duct cell [Term] @@ -23915,6 +24145,7 @@ comment: This needs to be further defined as a juxtamedullary nephron. Will requ synonym: "kidney tubule epithelial cell" EXACT [] xref: FMA:86785 xref: KUPO:0001022 +is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell [Term] @@ -23963,7 +24194,7 @@ id: CL:1000507 name: kidney tubule cell namespace: cell xref: KUPO:0001020 -is_a: CL:1000449 ! epithelial cell of nephron +is_a: CL:1000497 ! kidney cell [Term] id: CL:1000510 @@ -24001,7 +24232,7 @@ id: CL:1000549 name: kidney cortex collecting duct epithelial cell namespace: cell xref: KUPO:0001063 -is_a: CL:0002584 ! renal cortical epithelial cell +is_a: CL:0002681 ! kidney cortical cell is_a: CL:1001225 ! kidney collecting duct cell [Term] @@ -24062,6 +24293,7 @@ name: kidney cortex tubule cell namespace: cell xref: KUPO:0001024 is_a: CL:0002584 ! renal cortical epithelial cell +is_a: CL:1000449 ! epithelial cell of nephron is_a: CL:1000507 ! kidney tubule cell [Term] @@ -24205,6 +24437,7 @@ id: CL:1000714 name: kidney cortex collecting duct principal cell namespace: cell xref: KUPO:0001130 +is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000549 ! kidney cortex collecting duct epithelial cell is_a: CL:1001431 ! kidney collecting duct principal cell @@ -24213,6 +24446,7 @@ id: CL:1000715 name: kidney cortex collecting duct intercalated cell namespace: cell xref: KUPO:0001131 +is_a: CL:0002584 ! renal cortical epithelial cell is_a: CL:1000549 ! kidney cortex collecting duct epithelial cell is_a: CL:1001432 ! kidney collecting duct intercalated cell @@ -24710,7 +24944,7 @@ name: kidney collecting duct cell namespace: cell xref: http://en.wikipedia.org/wiki/Kidney_collecting_duct_cell xref: KUPO:0001012 -is_a: CL:1000449 ! epithelial cell of nephron +is_a: CL:1000497 ! kidney cell [Term] id: CL:1001285 @@ -25617,10 +25851,11 @@ creation_date: 2014-06-25T03:44:44Z [Term] id: CL:2000036 -name: anterior lateral line neuromast support cell +name: anterior lateral line neuromast supporting cell namespace: cell def: "Any neuromast support cell that is part of a anterior lateral line." [] -is_a: CL:0000852 ! neuromast support cell +synonym: "anterior lateral line neuromast support cell" EXACT [] +is_a: CL:0000852 ! neuromast supporting cell created_by: TermGenie creation_date: 2014-06-25T03:44:51Z @@ -25644,10 +25879,11 @@ creation_date: 2014-06-25T03:45:04Z [Term] id: CL:2000039 -name: posterior lateral line neuromast support cell +name: posterior lateral line neuromast supporting cell namespace: cell def: "Any neuromast support cell that is part of a posterior lateral line." [] -is_a: CL:0000852 ! neuromast support cell +synonym: "posterior lateral line neuromast support cell" EXACT [] +is_a: CL:0000852 ! neuromast supporting cell created_by: TermGenie creation_date: 2014-06-25T03:45:11Z @@ -25880,7 +26116,7 @@ namespace: cell def: "Any capillary endothelial cell that is part of a placenta." [] comment: http://www.ncbi.nlm.nih.gov/books/NBK53245/ is_a: CL:0002144 ! capillary endothelial cell -is_a: CL:0002577 ! placental epithelial cell +is_a: CL:0009092 ! endothelial cell of placenta created_by: TermGenie creation_date: 2014-10-07T17:55:56Z @@ -26053,11 +26289,11 @@ creation_date: 2014-12-02T19:07:31Z [Term] id: CL:2000080 -name: mesenchymal stem cell of abdominal adipose name: mesenchymal stem cell of abdominal adipose tissue namespace: cell -def: "Any mesenchymal stem cell of adipose that is part of a abdomen." [] -is_a: CL:0002570 ! mesenchymal stem cell of adipose +def: "Any mesenchymal stem cell of adipose tissue that is part of an abdomen." [] +synonym: "mesenchymal stem cell of abdominal adipose" EXACT [] +is_a: CL:0002570 ! mesenchymal stem cell of adipose tissue created_by: TermGenie creation_date: 2014-12-02T19:10:34Z @@ -26153,6 +26389,8 @@ name: dentate gyrus of hippocampal formation stellate cell namespace: cell def: "Any stellate cell that is part of a dentate gyrus of hippocampal formation." [] is_a: CL:0000122 ! stellate neuron +is_a: CL:0010012 ! cerebral cortex neuron +is_a: CL:0012001 ! neuron of the forebrain created_by: TermGenie creation_date: 2015-02-23T05:48:40Z @@ -26161,6 +26399,7 @@ id: CL:2000091 name: endometrial microvascular endothelial cells namespace: cell def: "Any microvascular endothelial cell that is part of a endometrial blood vessel." [] +is_a: CL:0009095 ! endothelial cell of uterus is_a: CL:2000008 ! microvascular endothelial cell created_by: TermGenie creation_date: 2015-03-31T21:02:36Z @@ -26208,7 +26447,6 @@ id: CL:2000096 name: fibroblast of the reticular layer of dermis namespace: cell def: "Any fibroblast that is part of a reticular layer of dermis." [] -is_a: CL:0000066 ! epithelial cell is_a: CL:0002551 ! fibroblast of dermis created_by: TermGenie creation_date: 2015-08-11T16:28:16Z @@ -26340,12 +26578,12 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023007 -name: L2/3 bipolar Vip GABAergic cortical interneuron (Mus musculus) -def: "A Vip GABAergic cortical interneuron with bipolar morphology, with a soma found in L2/3. L2/3 bipolar Vip Cells have extending axons across all layers (with preferences for layers II/III and Va) and a dendritic tree that is vertically more restricted than deeper layer VIP cells and extend fewer dendrites into the layers outside their home layer (location of soma). L2/3 Bipolar Vip Cells have great variability in firing patterns, though most are continuous adapting. L2/3 Bipolar Vip Cells are more depolarized in their resting state, had less fast rectification, and had smaller after hyperpolarization than deeper Vip cells." [] +name: L2/3 bipolar vip GABAergic cortical interneuron (Mus musculus) +def: "A vip GABAergic cortical interneuron with bipolar morphology, with a soma found in L2/3. L2/3 bipolar vip cells have extending axons across all layers (with preferences for layers II/III and Va) and a dendritic tree that is vertically more restricted than deeper layer vip cells and extend fewer dendrites into the layers outside their home layer (location of soma). L2/3 bipolar vip cells have great variability in firing patterns, though most are continuous adapting. L2/3 bipolar vip cells are more depolarized in their resting state, had less fast rectification, and had smaller after hyperpolarization than deeper vip cells." [] subset: BDS_subset synonym: "L2/3 bipolar Vip (Mus)" EXACT [] is_a: CL:0000103 ! bipolar neuron -is_a: CL:4023016 ! Vip GABAergic cortical interneuron +is_a: CL:4023016 ! vip GABAergic cortical interneuron property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] @@ -26382,7 +26620,7 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023011 -name: Lamp5 GABAergic cortical interneuron +name: lamp5 GABAergic cortical interneuron def: "A GABAergic neuron located in the cerebral cortex that expresses Lamp5" [] subset: BDS_subset xref: ILX:0770149 @@ -26412,11 +26650,11 @@ property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023014 -name: L5 Vip cortical GABAergic interneuron (Mus musculus) -def: "A Vip GABAergic cortical interneuron with a soma found in L5. L5 Vip cells have mostly local morphology with some deep-projecting axons. They show only moderate resistance, comparable to that of Sst subclass and unlike typical Vip subclass cells that tend to show high input resistance. L5 Vip cells show particularly low resting membrane potential." [] +name: L5 vip cortical GABAergic interneuron (Mus musculus) +def: "A vip GABAergic cortical interneuron with a soma found in L5. L5 vip cells have mostly local morphology with some deep-projecting axons. They show only moderate resistance, comparable to that of sst subclass and unlike typical Vip subclass cells that tend to show high input resistance. L5 vip cells show particularly low resting membrane potential." [] subset: BDS_subset synonym: "L5 VIP (Mus)" EXACT [] -is_a: CL:4023016 ! Vip GABAergic cortical interneuron +is_a: CL:4023016 ! vip GABAergic cortical interneuron property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] @@ -26430,7 +26668,7 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023016 -name: Vip GABAergic cortical interneuron +name: vip GABAergic cortical interneuron def: "A GABAergic neuron located in the cerebral cortex that expresses vasoactive intestinal polypeptide" [] subset: BDS_subset xref: ILX:0770151 @@ -26457,11 +26695,11 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023019 -name: L5/6 CCK, Vip cortical GABAergic interneuron (Mus musculus) -def: "A Vip GABAergic cortical interneuron that expresses CCK. L5/6 CCK cells have soma found mainly in L5 and L6 and have large axonal arborization." [] +name: L5/6 cck, vip cortical GABAergic interneuron (Mus musculus) +def: "A vip GABAergic cortical interneuron that expresses cck. L5/6 cck cells have soma found mainly in L5 and L6 and have large axonal arborization." [] subset: BDS_subset synonym: "L5/6 CCK Vip (Mus)" EXACT [] -is_a: CL:4023071 ! L5/6 CCK cortical GABAergic interneuron (Mus musculus) +is_a: CL:4023071 ! L5/6 cck cortical GABAergic interneuron (Mus musculus) property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] @@ -26480,45 +26718,45 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023022 -name: canopy Lamp5 GABAergic cortical interneuron (Mus musculus) +name: canopy lamp5 GABAergic cortical interneuron (Mus musculus) def: "A Lamp5 GABAergic cortical interneuron that has extended axons in the surface of L1. Canopy Lamp5 cells resemble neurogliaform cells in having elongated horizontal axonal arbors largely confined to L1; but the dendritic arbors are wider and have fewer branches, while the axon is less tortuous and extends further from the soma" [] subset: BDS_subset -is_a: CL:4023011 ! Lamp5 GABAergic cortical interneuron +is_a: CL:4023011 ! lamp5 GABAergic cortical interneuron created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023023 -name: L5,6 Neurogliaform Lamp5 GABAergic cortical interneuron (Mus musculus) -def: "A Lamp 5 GABAergic cortical interneuron with neurogliaform morphology with a soma found in L5,6. L5,6 NGC Lamp5 have deep afterhyperpolarization (AHP) but narrow action potentials (APs). Unlike other deep neurogliaform cells (which are caudal ganglionic eminence (CGE) derived), L5,6 NGC Lamp5 cells are medial ganglionic eminence (MGE)-derived" [] +name: L5,6 neurogliaform lamp5 GABAergic cortical interneuron (Mus musculus) +def: "A lamp 5 GABAergic cortical interneuron with neurogliaform morphology with a soma found in L5,6. L5,6 NGC lamp5 have deep afterhyperpolarization (AHP) but narrow action potentials (APs). Unlike other deep neurogliaform cells (which are caudal ganglionic eminence (CGE) derived), L5,6 NGC lamp5 cells are medial ganglionic eminence (MGE)-derived" [] subset: BDS_subset synonym: "L5,6 NGC Lamp5 (mus)" EXACT [] is_a: CL:0000693 ! neurogliaform cell -is_a: CL:4023011 ! Lamp5 GABAergic cortical interneuron +is_a: CL:4023011 ! lamp5 GABAergic cortical interneuron created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023024 -name: Neurogliaform Lamp5 GABAergic cortical interneuron (Mus musculus) -def: "A Lamp5 GABAergic cortical interneuron with layer-adapting morphology. NGC Lamp5 cells have a small round soma, short dendrites, and a wide dense axonal arbor that tends to establish a dense axonal mesh with high connection probability both to themselves and L2 pyramidal cells. NGC Lamp5 cells have unique synaptic properties that distinguish them from other GABAergic interneurons, including the release of GABA to the extracellular space via volume transmission, and the ability to produce GABA-B responses in connected postsynaptic targets." [] +name: neurogliaform lamp5 GABAergic cortical interneuron (Mus musculus) +def: "A lamp5 GABAergic cortical interneuron with layer-adapting morphology. NGC lamp5 cells have a small round soma, short dendrites, and a wide dense axonal arbor that tends to establish a dense axonal mesh with high connection probability both to themselves and L2 pyramidal cells. NGC lamp5 cells have unique synaptic properties that distinguish them from other GABAergic interneurons, including the release of GABA to the extracellular space via volume transmission, and the ability to produce GABA-B responses in connected postsynaptic targets." [] subset: BDS_subset synonym: "NGC Lamp5 (mus)" EXACT [] is_a: CL:0000693 ! neurogliaform cell -is_a: CL:4023011 ! Lamp5 GABAergic cortical interneuron +is_a: CL:4023011 ! lamp5 GABAergic cortical interneuron created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023025 -name: Long-range projecting Sst GABAergic cortical interneuron (Mus musculus) -def: "A Sst GABAergic cortical interneuron that is both an interneuron and a projecting neuron. They are found in all layers from upper L2/3 down to the bottom of L6. They have long-range projections, some with axons fading into white matter. These cells have low rebound potential, low hyperpolarization sag, and high variability in membrane time constant." [] +name: long-range projecting sst GABAergic cortical interneuron (Mus musculus) +def: "A sst GABAergic cortical interneuron that is both an interneuron and a projecting neuron. They are found in all layers from upper L2/3 down to the bottom of L6. They have long-range projections, some with axons fading into white matter. These cells have low rebound potential, low hyperpolarization sag, and high variability in membrane time constant." [] subset: BDS_subset synonym: "LP SST (Mus)" EXACT [] -is_a: CL:4023017 ! sst GABAergic cortical interneuron +is_a: CL:4023121 ! sst chodl GABAergic cortical interneuron created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023027 -name: L5 T-Martinotti Sst GABAergic cortical interneuron (Mus musculus) -def: "A Sst GABAergic cortical interneuron with a soma found in L5 and possesses 'T-shaped' Martinotti morphologies with local axonal plexus in L5a and translaminar axons restricted to the uppermost part of L1. They show low-threshold spiking patterns with strong rebound firing, and inhibit the L1 apical tuft of nearby pyramidal cells." [] +name: L5 T-Martinotti sst GABAergic cortical interneuron (Mus musculus) +def: "A sst GABAergic cortical interneuron with a soma found in L5 and possesses 'T-shaped' Martinotti morphologies with local axonal plexus in L5a and translaminar axons restricted to the uppermost part of L1. They show low-threshold spiking patterns with strong rebound firing, and inhibit the L1 apical tuft of nearby pyramidal cells." [] subset: BDS_subset synonym: "L5 T Martinotti SST (Mus)" EXACT [] is_a: CL:4023017 ! sst GABAergic cortical interneuron @@ -26527,8 +26765,8 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023028 -name: L5 non-Martinotti Sst GABAergic cortical interneuron (Mus musculus) -def: "A Sst GABAergic cortical interneuron with a soma found in lower L5 with mostly local axonal arborization but with some sparse ascending axons. L5 non-Martinotti Sst cells show somatic localization and local axon plexus in L5b and L5b/6 and substantial innervation of L3 and L4, and receive thalamic input from the ventral posteromedial nucleus and specifically target L4 neurons, avoiding L5 pyramidal cells. L5 non-Martinotti Sst cells tend to show a higher input resistance and seem to be less stuttering." [] +name: L5 non-Martinotti sst GABAergic cortical interneuron (Mus musculus) +def: "A sst GABAergic cortical interneuron with a soma found in lower L5 with mostly local axonal arborization but with some sparse ascending axons. L5 non-Martinotti sst cells show somatic localization and local axon plexus in L5b and L5b/6 and substantial innervation of L3 and L4, and receive thalamic input from the ventral posteromedial nucleus and specifically target L4 neurons, avoiding L5 pyramidal cells. L5 non-Martinotti sst cells tend to show a higher input resistance and seem to be less stuttering." [] subset: BDS_subset synonym: "L5 non-Martinotti SST (Mus)" EXACT [] is_a: CL:4023017 ! sst GABAergic cortical interneuron @@ -26536,8 +26774,8 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023030 -name: L2/3/5 fan Martinotti Sst GABAergic cortical interneuron (Mus musculus) -def: "A Sst GABAergic cortical interneuron that has \"fanning-out' Martinotti morphology that is found in layer 2/3/5 of the cerebral cortex. They have local axon arbor and long ascending axons that spreads horizontally and arborizes significantly in L1." [] +name: L2/3/5 fan Martinotti sst GABAergic cortical interneuron (Mus musculus) +def: "A sst GABAergic cortical interneuron that has \"fanning-out' Martinotti morphology that is found in layer 2/3/5 of the cerebral cortex. They have local axon arbor and long ascending axons that spreads horizontally and arborizes significantly in L1." [] comment: L2/3/5 fan Martionotti SST cells have an adapting firing pattern and non-zero afterdepolarization (ADP). subset: BDS_subset synonym: "L2/3/5 fan Martinotti SST (Mus)" EXACT [] @@ -26547,8 +26785,8 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023031 -name: L4 Sst GABAergic cortical interneuron (Mus musculus) -def: "A Sst GABAergic cortical interneuron with a soma found in lower L2/3 and upper 5, L4 Sst cells have Martinotti morphology with ascending axons but denser local axons and sparser ‘fanning-out’ projections to L1. L4 Sst cells have smaller membrane time constant to calb2 (L2/3/5 Fan Martinotti Cell) and non-zero afterdepolarization (ADP)." [] +name: L4 sst GABAergic cortical interneuron (Mus musculus) +def: "A sst GABAergic cortical interneuron with a soma found in lower L2/3 and upper 5, L4 Sst cells have Martinotti morphology with ascending axons but denser local axons and sparser ‘fanning-out’ projections to L1. L4 sst cells have smaller membrane time constant to calb2 (L2/3/5 fan Martinotti Cell) and non-zero afterdepolarization (ADP)." [] subset: BDS_subset synonym: "L4 SST (Mus)" EXACT [] is_a: CL:4023017 ! sst GABAergic cortical interneuron @@ -26557,17 +26795,18 @@ created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023034 -name: L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) -def: "A Sst GABAergic cortical interneuron transcriptomically between the Sst and the Pvalb families with a soma found in L2/3. Some L2/3 PV-like SST cells have Martinotti morphology while some have basket cell morphology. L2/3 PV-like SST cells have lower AP width and higher firing rate than typical Sst subclass cells. L2/3 PV-like SST cells have high maximum firing rate variability, with many classified as belonging to the Pvalb subclass on the basis of electrophysiology." [] -subset: BDS_subset +name: obsolete L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) +def: "OBSOLETE A sst GABAergic cortical interneuron transcriptomically between the sst and the pvalb families with a soma found in L2/3. Some L2/3 PV-like sst cells have Martinotti morphology while some have basket cell morphology. L2/3 PV-like sst cells have lower AP width and higher firing rate than typical Sst subclass cells. L2/3 PV-like sst cells have high maximum firing rate variability, with many classified as belonging to the pvalb subclass on the basis of electrophysiology." [] +comment: Moved to PCL - see https://github.com/obophenotype/brain_data_standards_ontologies/issues/231. Use PCL:1000002 instead. synonym: "L2/3 PV-like SST Mus)" EXACT [] -is_a: CL:4023017 ! sst GABAergic cortical interneuron +is_obsolete: true +replaced_by: PCL:1000002 created_by: http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023036 -name: Chandelier Pvalb GABAergic cortical interneuron -def: "A Pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner." [] +name: chandelier pvalb GABAergic cortical interneuron +def: "A pvalb GABAergic cortical interneuron that is recognizable by the straight terminal axonal 'cartridges' of vertically oriented strings of synaptic boutons. Chandelier PV cells' boutons target exclusively the axon initial segment (AIS) of pyramidal cells, with a single cell innervating hundreds of pyramidal cells in a clustered manner." [] comment: In mice, Chandelier PV cells have soma found in in upper L2/3, with some in deep L5 and exhibit fast-spiking but lower firing rate compared to basket cells, and have practically absent hyperpolarization sag. subset: BDS_subset synonym: "Chandelier PV" EXACT [] @@ -26789,13 +27028,13 @@ property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023067 -name: Martinotti morphology L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) -def: "A L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) that has Martinotti morphology." [] -subset: BDS_subset +name: obsolete Martinotti morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) +def: "OBSOLETE A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has Martinotti morphology." [] +comment: Moved to PCL - see https://github.com/obophenotype/brain_data_standards_ontologies/issues/231. Use PCL:1000004 instead. synonym: "Martinotti L2/3 PV-like SST (Mus)" EXACT [] -is_a: CL:4023034 ! L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) -is_a: CL:4023076 ! Martinotti neuron property_value: dc-creator http://orcid.org/0000-0001-7258-9596 +is_obsolete: true +replaced_by: PCL:1000004 [Term] id: CL:4023069 @@ -26815,14 +27054,23 @@ property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023071 -name: L5/6 CCK cortical GABAergic interneuron (Mus musculus) -def: "A GABAergic cortical interneuron that expresses CCK. L5/6 CCK cells have soma found mainly in L5 and L6 and have large axonal arborization." [] +name: L5/6 cck cortical GABAergic interneuron (Mus musculus) +def: "A GABAergic cortical interneuron that expresses cck. L5/6 cck cells have soma found mainly in L5 and L6 and have large axonal arborization." [] subset: BDS_subset synonym: "L5/6 CCK (Mus)" EXACT [] is_a: CL:0000402 ! CNS interneuron is_a: CL:0011005 ! GABAergic interneuron property_value: dc-creator http://orcid.org/0000-0001-7258-9596 +[Term] +id: CL:4023075 +name: L6 tyrosine hydroxylase positive sst expressing GABAergic cortical interneuron (Mus musculus) +def: "A sst GABAergic cortical interneuron found in L6 that expresses tyrosine hydroxylase. L6 Th+ SST cells have mostly local axonal arborization within L6." [] +subset: BDS_subset +synonym: "L6 Th+ SST (Mus)" EXACT [] +is_a: CL:4023017 ! sst GABAergic cortical interneuron +property_value: dc-creator http://orcid.org/0000-0001-7258-9596 + [Term] id: CL:4023076 name: Martinotti neuron @@ -26845,13 +27093,13 @@ property_value: dc-creator http://orcid.org/0000-0001-7258-9596 [Term] id: CL:4023078 -name: basket morphology L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) -def: "A L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) that has basket morphology." [] -subset: BDS_subset +name: obsolete basket morphology L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) +def: "OBSOLETE A L2/3 pvalb-like sst GABAergic cortical interneuron (Mus musculus) that has basket morphology." [] +comment: Moved to PCL - see https://github.com/obophenotype/brain_data_standards_ontologies/issues/231. Use PCL:1000003 instead. synonym: "basket L2/3 PV-like SST (Mus)" EXACT [] -is_a: CL:0000118 ! basket cell -is_a: CL:4023034 ! L2/3 Pvalb-like Sst GABAergic cortical interneuron (Mus musculus) property_value: dc-creator http://orcid.org/0000-0001-7258-9596 +is_obsolete: true +replaced_by: PCL:1000003 [Term] id: CL:4023080 @@ -26965,7 +27213,6 @@ name: arachnoid barrier cell def: "A mesothelial fibroblast of the arachnoid barrier layer. Arachnoid barrier cells make up the tight-junctioned layer in the leptomeninx that functions as the physiologic barrier between the cerebrospinal fluid in the subarachnoid space and the fenestrated capillaries in the dura." [] synonym: "AB cell" EXACT [] synonym: "ABC" EXACT [] -is_a: CL:0002078 ! meso-epithelial cell is_a: CL:4023058 ! mesothelial fibroblast of the leptomeninx property_value: dc-creator http://orcid.org/0000-0001-7258-9596 @@ -27175,11 +27422,124 @@ is_a: CL:0000202 ! auditory hair cell is_a: CL:0002374 ! ear hair cell property_value: dc-creator http://orcid.org/0000-0001-7258-9596 +[Term] +id: CL:4023121 +name: sst chodl GABAergic cortical interneuron +def: "A sst GABAergic cortical interneuron that also expresses Chodl. These neurons are rare and correspond to the only known cortical interneurons with long-range projection." [] +synonym: "long-range GABAergic interneuron" BROAD [] +is_a: CL:4023017 ! sst GABAergic cortical interneuron +property_value: dc-creator http://orcid.org/0000-0001-7258-9596 + +[Term] +id: CL:4023122 +name: oxytocin receptor sst GABAergic cortical interneuron +def: "An interneuron located in the cerebral cortex that expresses the oxytocin receptor. These interneurons also express somatostatin." [] +comment: These cells were first identified in mouse. +synonym: "OxtrINs" BROAD [] +is_a: CL:4023017 ! sst GABAergic cortical interneuron +property_value: dc-creator http://orcid.org/0000-0001-7258-9596 +relationship: present_in_taxon NCBITaxon:10090 ! Mus musculus + +[Term] +id: CL:4023129 +name: retinoblast +def: "A retinal cell that is immature or undifferentiated." [] +synonym: "retinal stem cell" EXACT [] +is_a: CL:0009004 ! retinal cell +property_value: dc-contributor http://orcid.org/0000-0001-7258-9596 +property_value: dc-contributor http://orcid.org/0000-0002-0819-0473 + [Term] id: CL:4028001 name: pulmonary capillary endothelial cell +def: "Any capillary endothelial cell that is part of a lung." [] +synonym: "lung capillary endothelial cell" EXACT [] is_a: CL:0002144 ! capillary endothelial cell is_a: CL:2000016 ! lung microvascular endothelial cell +created_by: http://orcid.org/0000-0002-3293-5463 +creation_date: 2021-11-23T02:31:40Z + +[Term] +id: CL:4028002 +name: alveolar capillary type 1 endothelial cell +def: "An alveolar capillary endothelial cell that is located distally to alveolar capillary type 2 endothelial cells." [] +synonym: "'CAP1'" BROAD [] +synonym: "'capillary 1 cell'" BROAD [] +synonym: "'gCAP'" BROAD [] +synonym: "'general capillary cell'" BROAD [] +is_a: CL:0010003 ! epithelial cell of alveolus of lung +is_a: CL:4028001 ! pulmonary capillary endothelial cell +created_by: http://orcid.org/0000-0002-3293-5463 +creation_date: 2021-11-23T03:23:53Z + +[Term] +id: CL:4028003 +name: alveolar capillary type 2 endothelial cell +def: "An alveolar capillary endothelial cell that is located proximally to alveolar capillary type 1 endothelial cells and in close apposition to alveolar type 1 epithelial cells (also known as type I pneumocytes)." [] +synonym: "aCAP" BROAD [] +synonym: "aerocyte" BROAD [] +synonym: "alveolar capillary cell" BROAD [] +synonym: "capillary 2 cell" BROAD [] +synonym: "Car4+ capillary endothelial cell" BROAD [] +synonym: "CD34hi endothelial cells" BROAD [] +is_a: CL:0010003 ! epithelial cell of alveolus of lung +is_a: CL:4028001 ! pulmonary capillary endothelial cell +created_by: http://orcid.org/0000-0002-3293-5463 +creation_date: 2021-11-23T03:23:53Z + +[Term] +id: CL:4028004 +name: alveolar type 1 fibroblast cell +def: "A pulmonary interstitial fibroblast that is part of the alveolus and contains lipid droplets." [] +synonym: "AF1" BROAD [] +synonym: "alveolar fibroblast" BROAD [] +synonym: "alveolar fibroblast 1" BROAD [] +synonym: "lipid interstitial cell" BROAD [] +synonym: "lipofibroblast" BROAD [] +synonym: "matrix fibroblast 1" BROAD [] +synonym: "pulmonary lipofibroblast" BROAD [] +is_a: CL:0002241 ! pulmonary interstitial fibroblast +is_a: CL:0002553 ! fibroblast of lung +created_by: http://orcid.org/0000-0002-3293-5463 +creation_date: 2021-12-09T15:34:13Z + +[Term] +id: CL:4028006 +name: alveolar type 2 fibroblast cell +def: "A pulmonary interstitial fibroblast that is part of the alveolus and localizes to vascular adventitia." [] +synonym: "adventitial fibroblast" BROAD [] +synonym: "AF2" BROAD [] +synonym: "alveolar fibroblast" BROAD [] +synonym: "MANC" BROAD [] +synonym: "matrix fibroblast 2" BROAD [] +synonym: "mesenchymal alveolar niche cell" BROAD [] +synonym: "type-2 associated stromal cell" BROAD [] +is_a: CL:0002241 ! pulmonary interstitial fibroblast +is_a: CL:0002553 ! fibroblast of lung +created_by: http://orcid.org/0000-0002-3293-5463 +creation_date: 2021-12-09T15:53:21Z + +[Term] +id: CL:4030000 +name: choroidal melanocyte +def: "A melanocyte located in the vascular uvea and involved in photoprotection, regulation of oxidative damage and immune responses." [] +comment: Cellular functions and extracellular interactions of choroidal melanocytes are distinct to skin melanocytes. They might have both neuroectodermal as well as mesectodermal origins. +synonym: "uveal melanocyte" EXACT [] +is_a: CL:0000148 ! melanocyte +creation_date: 2022-01-20T12:59:06Z + +[Term] +id: CL:4030002 +name: effector memory CD45RA-positive, alpha-beta T cell, terminally differentiated +def: "An alpha-beta memory T cell with the phenotype CD45RA-positive." [] +synonym: "effector memory RA T cell" BROAD [] +synonym: "TEMRA" BROAD [] +synonym: "TEMRA cell" EXACT [] +synonym: "terminally differentiated effector memory CD45RA+ T cells" EXACT [] +synonym: "terminally differentiated effector memory cells re-expressing CD45RA" EXACT [] +is_a: CL:0000791 ! mature alpha-beta T cell +property_value: dc-contributor http://orcid.org/0000-0002-1773-2692 +creation_date: 2022-02-01T13:04:46Z [Term] id: ENVO:00000000 @@ -31316,7 +31676,6 @@ relationship: negatively_regulates GO:0001525 ! angiogenesis [Term] id: GO:0016528 name: sarcoplasm -is_a: CARO:0000000 ! anatomical entity is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: part_of CL:0000187 ! muscle cell @@ -32861,7 +33220,6 @@ is_a: GO:0030072 ! peptide hormone secretion [Term] id: GO:0036194 name: muscle cell projection -is_a: CARO:0000000 ! anatomical entity is_a: GO:0120025 ! plasma membrane bounded cell projection intersection_of: GO:0120025 ! plasma membrane bounded cell projection intersection_of: part_of CL:0000187 ! muscle cell @@ -33240,7 +33598,6 @@ is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0043209 name: myelin sheath -is_a: CARO:0000000 ! anatomical entity is_a: GO:0110165 ! cellular anatomical entity relationship: part_of CL:0000125 ! glial cell @@ -37045,7 +37402,6 @@ is_a: GO:0003014 ! renal system process [Term] id: GO:0097386 name: glial cell projection -is_a: CARO:0000000 ! anatomical entity is_a: GO:0120025 ! plasma membrane bounded cell projection intersection_of: GO:0120025 ! plasma membrane bounded cell projection intersection_of: part_of CL:0000125 ! glial cell @@ -37076,7 +37432,6 @@ is_a: GO:0044302 ! dentate gyrus mossy fiber [Term] id: GO:0097511 name: dendritic cell dendrite -is_a: CARO:0000000 ! anatomical entity is_a: GO:0120025 ! plasma membrane bounded cell projection intersection_of: GO:0120025 ! plasma membrane bounded cell projection intersection_of: part_of CL:0000451 ! dendritic cell @@ -42959,7 +43314,6 @@ xref: NCIT:C12311 xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA xref: UMLS:C0007874 {source="ncithesaurus:Cervix"} xref: VHOG:0001359 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001560 ! neck of organ @@ -43034,7 +43388,6 @@ is_a: CARO:0000003 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0002268 ! olfactory organ is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007608 ! sensory perception of smell relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system relationship: contributes_to_morphology_of UBERON:0001456 ! face @@ -43052,7 +43405,6 @@ subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: capable_of GO:0007606 ! sensory perception of chemical stimulus @@ -43090,7 +43442,6 @@ xref: NCIT:C12608 xref: UMLS:C0022131 {source="ncithesaurus:Islet_of_Langerhans"} xref: VHOG:0000646 xref: XAO:0000159 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034922 ! cell cluster relationship: contributes_to_morphology_of UBERON:0000016 ! endocrine pancreas relationship: fma_set_term FMA:76489 @@ -43153,9 +43504,15 @@ xref: XAO:0000017 xref: ZFA:0000118 is_a: UBERON:0002368 {source="BTO", source="EFO", source="VHOG"} ! endocrine gland is_a: UBERON:0003296 ! gland of diencephalon +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010133 ! neuroendocrine gland relationship: capable_of_part_of GO:0007276 ! gamete generation relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0007811 ! craniocervical region +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: develops_from UBERON:0034875 ! future pituitary gland relationship: has_part CL:0000440 {source="ZFA"} ! melanocyte stimulating hormone secreting cell relationship: has_part CL:0000642 {source="ZFA"} ! folliculostellate cell @@ -43234,7 +43591,6 @@ xref: UMLS:C1305921 {source="BIRNLEX:1111"} xref: VHOG:0000399 xref: XAO:0000178 xref: ZFA:0000142 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system @@ -43299,7 +43655,6 @@ xref: MA:0002850 xref: MAT:0000099 xref: MIAA:0000099 xref: NLXANAT:100301 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system @@ -43340,7 +43695,6 @@ xref: UMLS:C0039044 {source="BIRNLEX:2516"} xref: UMLS:C1269646 {source="BIRNLEX:2516"} xref: VHOG:0000384 xref: ZFA:0001576 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="ZFA-modified-from-isa"} ! autonomic nervous system @@ -43480,7 +43834,6 @@ xref: Compound:eye xref: FBbt:00004508 xref: HAO:0000217 xref: TGMA:0000024 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0015165 ! multi-unit eye intersection_of: UBERON:0000970 ! eye intersection_of: composed_primarily_of UBERON:0000971 ! ommatidium @@ -43608,7 +43961,6 @@ is_a: UBERON:0000021 ! cutaneous appendage is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0001003 ! skin epidermis relationship: has_part GO:0045095 ! keratin filament -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires relationship: only_in_taxon NCBITaxon:436491 ! Theropoda [Term] @@ -43631,18 +43983,6 @@ intersection_of: UBERON:0000026 ! appendage intersection_of: has_quality PATO:0002236 ! aliform relationship: capable_of_part_of GO:0060361 ! flight relationship: has_quality PATO:0002236 ! aliform -relationship: never_in_taxon NCBITaxon:118072 {source="bgee"} ! Coelacanthimorpha -relationship: never_in_taxon NCBITaxon:186634 {seeAlso="Wikipedia:Flying_fish", source="bgee"} ! Otomorpha -relationship: never_in_taxon NCBITaxon:314147 {source="bgee"} ! Glires -relationship: never_in_taxon NCBITaxon:6231 {source="bgee"} ! Nematoda -relationship: never_in_taxon NCBITaxon:7878 {source="bgee"} ! Dipnomorpha -relationship: never_in_taxon NCBITaxon:8292 {notes="we do not consider flying frogs to have wings", source="bgee"} ! Amphibia -relationship: never_in_taxon NCBITaxon:8457 {source="bgee"} ! Sauropsida -relationship: never_in_taxon NCBITaxon:91561 {source="bgee"} ! Artiodactyla -relationship: never_in_taxon NCBITaxon:9254 {source="bgee"} ! Prototheria -relationship: never_in_taxon NCBITaxon:9263 {source="bgee"} ! Metatheria -relationship: never_in_taxon NCBITaxon:9443 {source="bgee"} ! Primates -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:33213 ! Bilateria [Term] @@ -43978,7 +44318,6 @@ synonym: "ovarian follicle antrum" EXACT [GO:0001548] xref: EMAPA:37867 {source="MA:th"} xref: FMA:18675 xref: Follicular:antrum -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: location_of UBERON:0000038 ! follicular fluid @@ -43998,7 +44337,6 @@ is_a: UBERON:0005057 ! immune organ is_a: UBERON:0005178 ! thoracic cavity element relationship: composed_primarily_of CL:0000738 {source="Honma1983"} ! leukocyte relationship: located_in UBERON:0001096 ! wall of esophagus -relationship: never_in_taxon NCBITaxon:7863 {source="Wikipedia"} ! Holocephali relationship: only_in_taxon NCBITaxon:7778 {source="Wikipedia"} ! Elasmobranchii relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system @@ -44132,7 +44470,6 @@ xref: VHOG:0000222 xref: XAO:0000210 xref: ZFA:0000200 is_a: UBERON:0001800 {source="MA"} ! sensory ganglion -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0002261 ! dorsal root of spinal cord @@ -44164,7 +44501,6 @@ xref: EHDAA:5621 xref: EHDAA:918 xref: EMAPA:32846 xref: EV:0100372 -xref: FBbt:00005137 xref: FMA:5884 xref: http://en.wikipedia.org/wiki/Ganglion xref: http://linkedlifedata.com/resource/umls/id/C0017067 @@ -44188,6 +44524,7 @@ is_a: UBERON:0010001 {source="https://github.com/obophenotype/uberon/issues/702" disjoint_from: UBERON:0002420 {inconsistent_with="BTO"} ! basal ganglion relationship: composed_primarily_of UBERON:0003714 {source="EHDAA2"} ! neural tissue property_value: dc-contributor https://github.com/cmungall +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0003869 ! presumptive ganglion relationship: immediate_transformation_of UBERON:0003869 {source="Bgee:AN"} ! presumptive ganglion relationship: part_of UBERON:0001016 ! nervous system @@ -44200,7 +44537,6 @@ subset: uberon_slim synonym: "pit eye" EXACT [http://en.wikipedia.org/wiki/Eye#Pit_eyes] xref: http://en.wikipedia.org/wiki/Stemma is_a: UBERON:0000047 ! simple eye -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: UBERON:0000047 @@ -44238,7 +44574,6 @@ subset: uberon_slim xref: Multiple_lenses is_a: UBERON:0000047 ! simple eye relationship: has_component UBERON:0005389 {min_cardinality="2"} ! transparent eye structure -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata [Term] id: UBERON:0000051 @@ -44255,7 +44590,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245475003 xref: NCIT:C33848 xref: UMLS:C0227794 {source="ncithesaurus:Vaginal_Fornix"} xref: Vaginal:fornix -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity disjoint_from: UBERON:0000052 ! fornix of brain relationship: part_of UBERON:0000996 ! vagina @@ -44328,7 +44662,6 @@ xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea"} xref: UMLS:C0450295 {source="BIRNLEX:2540"} xref: UMLS:C1284755 {source="BIRNLEX:2540"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0000054 ! macula relationship: part_of UBERON:0000966 ! retina @@ -44349,8 +44682,6 @@ xref: MESH:D008267 xref: TAO:0000386 xref: ZFA:0000386 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part GO:0070451 ! cell hair relationship: part_of UBERON:0001846 ! internal ear @@ -44588,7 +44919,6 @@ disjoint_from: UBERON:0034921 ! multi organ part structure relationship: capable_of GO:0008150 ! biological_process relationship: existence_starts_during_or_after UBERON:0000111 ! organogenesis stage relationship: has_boundary UBERON:0006984 ! anatomical surface -relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} ! Xenoturbella relationship: part_of UBERON:0000467 ! anatomical system [Term] @@ -44632,8 +44962,8 @@ xref: FMA:265130 xref: http://www.snomedbrowser.com/Codes/Details/361110005 xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA xref: VHOG:0000393 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001005 ! respiratory airway -is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut relationship: develops_from UBERON:0008947 ! respiratory primordium relationship: part_of UBERON:0001004 ! respiratory system @@ -44742,7 +45072,6 @@ xref: OGES:000008 xref: ZFS:0000048 is_a: UBERON:0000105 ! life cycle stage relationship: immediately_preceded_by UBERON:0000068 ! embryo stage -relationship: never_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of GO:0002164 ! larval development relationship: part_of UBERON:0000092 ! post-embryonic stage relationship: simultaneous_with GO:0002164 ! larval development @@ -44790,7 +45119,6 @@ synonym: "subdivision of respiratory tract" RELATED [] xref: EMAPA:16737 xref: FMA:45660 xref: MA:0000434 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: part_of UBERON:0000065 ! respiratory tract @@ -44808,7 +45136,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518256 xref: http://www.snomedbrowser.com/Codes/Details/25087005 xref: NCIT:C13040 xref: UMLS:C1518256 {source="ncithesaurus:Nervous_System_Part"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001016 ! nervous system @@ -44895,7 +45222,6 @@ xref: FMA:87656 xref: http://linkedlifedata.com/resource/umls/id/C1515087 xref: NCIT:C34309 xref: UMLS:C1515087 {source="ncithesaurus:Surface_Ectoderm"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000922 ! embryo @@ -45116,6 +45442,7 @@ xref: VHOG:0000541 is_a: CARO:0000003 is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac +is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct relationship: developmentally_induced_by UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct @@ -45137,7 +45464,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/361474003 xref: MESH:A16.254.270.550 xref: NCIT:C34212 xref: UMLS:C0026573 {source="ncithesaurus:Morula"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000922 ! embryo relationship: existence_ends_during UBERON:0000107 ! cleavage stage relationship: existence_starts_during UBERON:0000107 ! cleavage stage @@ -45175,7 +45501,6 @@ xref: UMLS:C0043519 {source="ncithesaurus:Zona_Pellucida"} xref: VHOG:0000720 xref: ZFA:0001111 xref: Zona:pellucida -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: bounding_layer_of CL:0000023 ! oocyte relationship: has_part CHEBI:17089 ! glycoprotein @@ -45269,7 +45594,6 @@ xref: UMLS:C1512561 {source="ncithesaurus:Hypoblast"} xref: VHOG:0001222 xref: XAO:0003044 xref: ZFA:0000117 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm @@ -45375,7 +45699,6 @@ xref: http://en.wikipedia.org/wiki/Cardiac_neural_crest xref: TAO:0002173 xref: XAO:0004190 xref: ZFA:0001648 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue property_value: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0002342 ! neural crest @@ -45391,7 +45714,6 @@ xref: AAO:0000045 xref: BTO:0001695 xref: http://en.wikipedia.org/wiki/Blastopore xref: XAO:0000208 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure property_value: dc-contributor https://github.com/ANiknejad property_value: dc-contributor https://github.com/cmungall @@ -45415,7 +45737,6 @@ xref: MA:0003098 xref: NCIT:C34021 xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA xref: UMLS:C0225752 {source="ncithesaurus:Lung_Lobe"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe relationship: contributes_to_morphology_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung @@ -45430,7 +45751,6 @@ synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -45681,9 +46001,9 @@ xref: EMAPA:35521 xref: FMA:27533 xref: http://www.snomedbrowser.com/Codes/Details/201609008 xref: MA:0001782 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002048 ! lung relationship: contributes_to_morphology_of UBERON:0002048 ! lung @@ -45703,6 +46023,7 @@ synonym: "pulmonary epithelium" RELATED [BTO:0001653] xref: BTO:0001653 xref: EMAPA:32860 xref: MA:0001783 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002048 ! lung @@ -45716,7 +46037,6 @@ name: lung saccule def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] subset: pheno_slim is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: has_part CL:0000322 ! pneumocyte relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung @@ -45732,7 +46052,6 @@ synonym: "tracheobronchial tree segment" NARROW [FMA:12224] xref: EMAPA:37946 {source="MA:th"} xref: FMA:12224 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0000065 ! respiratory tract relationship: has_part UBERON:0000483 ! epithelium @@ -45758,8 +46077,8 @@ xref: NCIT:C34282 xref: Respiratory:bud xref: UMLS:C1514420 {source="ncithesaurus:Primary_Bronchial_Bud"} xref: UMLS:C1514897 {source="ncithesaurus:Respiratory_Diverticulum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud -is_a: UBERON:0005911 ! endo-epithelium relationship: adjacent_to UBERON:0004872 ! splanchnic layer of lateral plate mesoderm relationship: develops_from UBERON:0005597 ! lung primordium relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium @@ -45788,7 +46107,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0005854 xref: NCIT:C13194 xref: nlx_subcell:100205 xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0000955 ! brain @@ -45808,7 +46126,6 @@ xref: NCIT:C33302 xref: NCIT:C41407 xref: NLXANAT:090205 xref: UMLS:C0205890 {source="ncithesaurus:Perineurium"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: bounding_layer_of UBERON:0001019 ! nerve fasciculus relationship: has_part GO:0005581 ! collagen trimer @@ -45827,7 +46144,6 @@ synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 xref: FBbt:00005099 xref: NLX:147821 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: has_part GO:0043005 ! neuron projection relationship: part_of UBERON:0001016 ! nervous system @@ -45844,7 +46160,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/15931004 xref: NCIT:C32518 xref: NLXANAT:090202 xref: UMLS:C0205888 {source="ncithesaurus:Endoneurium"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006804 {source="FMA"} ! reticular tissue relationship: bounding_layer_of UBERON:0006134 ! nerve fiber relationship: located_in UBERON:0000121 ! perineurium @@ -45865,7 +46180,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/64482002 xref: NCIT:C32528 xref: NLXANAT:090203 xref: UMLS:C0205889 {source="ncithesaurus:Epineurium"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: surrounds UBERON:0001021 ! nerve @@ -45933,12 +46247,15 @@ xref: MA:0001014 xref: NCIT:C12898 xref: UMLS:C0228740 {source="ncithesaurus:Facial_Nerve_Nucleus"} xref: VHOG:0001412 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus intersection_of: UBERON:0000126 ! cranial nerve nucleus intersection_of: extends_fibers_into UBERON:0001647 ! facial nerve relationship: contributes_to_morphology_of UBERON:0000988 ! pons +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010123 ! future facial nucleus relationship: extends_fibers_into UBERON:0001647 ! facial nerve relationship: immediate_transformation_of UBERON:0010123 {evidence="definitional"} ! future facial nucleus @@ -45956,9 +46273,7 @@ synonym: "olive body" EXACT [] xref: BTO:0002299 xref: http://www.snomedbrowser.com/Codes/Details/279293003 xref: Olivary:body -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -45974,7 +46289,6 @@ xref: EMAPA:36272 xref: FMA:23997 xref: http://www.snomedbrowser.com/Codes/Details/280735005 xref: Transverse:foramen -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0001588 ! vertebral vein @@ -45991,7 +46305,6 @@ synonym: "trochlea humeri" EXACT [http://en.wikipedia.org/wiki/Trochlea_of_humer xref: FMA:23370 xref: http://en.wikipedia.org/wiki/Trochlea_of_humerus xref: http://www.snomedbrowser.com/Codes/Details/282817004 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0004404 ! distal epiphysis of humerus @@ -46075,8 +46388,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/361385000 xref: MA:0001712 xref: TAO:0001113 xref: ZFA:0001113 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000119 ! cell layer intersection_of: composed_primarily_of CL:0000503 ! theca cell @@ -46102,7 +46415,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/258767003 xref: MA:0001713 xref: Theca:externa is_a: UBERON:0000158 ! membranous layer -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: bounding_layer_of UBERON:0000155 ! theca cell layer relationship: has_part GO:0005581 ! collagen trimer @@ -46126,7 +46438,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/258869006 xref: MA:0001714 xref: Theca_interna is_a: UBERON:0000158 ! membranous layer -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: contributes_to_morphology_of UBERON:0000155 ! theca cell layer relationship: part_of UBERON:0000155 ! theca cell layer @@ -46249,7 +46560,6 @@ xref: UMLS:C0008987 {source="ncithesaurus:Cloaca"} xref: VHOG:0001186 xref: XAO:0000244 xref: ZFA:0005781 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0001555 {source="ZFA"} ! digestive tract @@ -46266,6 +46576,7 @@ xref: Cloaca:(embryology) xref: EHDAA2:0000256 xref: EHDAA:4895 xref: EMAPA:27573 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000162 ! cloaca relationship: has_developmental_contribution_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000922 ! embryo @@ -46353,6 +46664,7 @@ xref: VHOG:0000812 xref: XAO:0003029 xref: ZFA:0000547 xref: ZFA:0000590 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 {notes="the mouth contains structures such as jaw skeleton that may not strictly be considered tract parts"} ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: proximalmost_part_of UBERON:0001555 ! digestive tract @@ -46372,7 +46684,6 @@ synonym: "oral fissure" EXACT [FMA:59806] synonym: "oral orifice" EXACT [FMA:59806] synonym: "oral part of face" RELATED [] xref: FMA:59806 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000165 ! mouth @@ -46408,7 +46719,6 @@ xref: VHOG:0000188 xref: WBbt:0005255 xref: XAO:0000126 xref: ZFA:0001027 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000165 ! mouth @@ -46606,6 +46916,7 @@ is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000179 ! haemolymphatic fluid property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/tmeehan +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0006596 ! presumptive blood relationship: has_part CL:0000232 {source="CL:tm"} ! erythrocyte relationship: has_part UBERON:0001969 ! blood plasma @@ -46658,7 +46969,6 @@ synonym: "radial neck" EXACT [FMA:23479] xref: FMA:23479 xref: galen:NeckOfRadius xref: http://www.snomedbrowser.com/Codes/Details/181942005 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -46689,8 +46999,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0458308 xref: http://www.snomedbrowser.com/Codes/Details/279165009 xref: NCIT:C32290 xref: UMLS:C0458308 {source="ncithesaurus:Cerebral_Gyrus"} -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034768 ! morphological feature property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/RDruzinsky @@ -46720,6 +47028,7 @@ id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] xref: FBbt:00007091 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000120 ! blood brain barrier intersection_of: UBERON:0000120 ! blood brain barrier intersection_of: composed_primarily_of CL:0000125 ! glial cell @@ -46749,7 +47058,6 @@ xref: TAO:0000505 xref: TAO:0007007 xref: ZFA:0000505 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0001893 ! telencephalon relationship: present_in_taxon NCBITaxon:7762 {source="http://www.ncbi.nlm.nih.gov/pubmed/8932866"} ! Myxinidae @@ -46771,7 +47079,6 @@ xref: EFO:0003522 xref: TAO:0000304 xref: ZFA:0000304 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: dorsal_to UBERON:0000203 {notes="separated by cell-free region"} ! pallium relationship: part_of UBERON:0001893 ! telencephalon @@ -46968,7 +47275,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/361831006 xref: NCIT:C32158 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto xref: UMLS:C0004169 {source="ncithesaurus:Atlanto-occipital_Joint"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0002217 ! synovial joint @@ -46986,7 +47292,6 @@ name: supraauricular point def: "A craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] synonym: "supra-auricular part of head" EXACT [FMA:224222] xref: FMA:224222 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0004655 ! zygomatic process of temporal bone @@ -47007,6 +47312,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/280366002 xref: NCIT:C34102 xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"} xref: VHOG:0000855 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012466 ! extraembryonic cavity is_a: UBERON:0012467 ! enclosed anatomical space relationship: contains UBERON:0000173 ! amniotic fluid @@ -47081,7 +47387,7 @@ xref: MESH:A16.254.403.277 xref: NCIT:C12365 xref: UMLS:C0002630 {source="ncithesaurus:Amnion"} xref: VHOG:0000721 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold relationship: has_developmental_contribution_from UBERON:0000924 {source="ISBN:0073040584-table5.4"} ! ectoderm @@ -47244,6 +47550,9 @@ synonym: "spatium leptomeningeum" RELATED LATIN [BTO:0000230] synonym: "spatium subarachnoideum" RELATED LATIN [BTO:0000230] synonym: "spatium subarachnoideum" RELATED LATIN [http://en.wikipedia.org/wiki/Subarachnoid_space] synonym: "subarachnoid cavity" RELATED [BTO:0000230] +synonym: "subarachnoid space of central nervous system" EXACT [] +synonym: "subarachnoid space of CNS" EXACT [] +synonym: "subarachnoid space of neuraxis" EXACT [FMA:322060] xref: BTO:0000230 xref: EMAPA:32666 xref: FMA:83716 @@ -47251,7 +47560,6 @@ xref: GAID:689 xref: http://www.snomedbrowser.com/Codes/Details/362311001 xref: MESH:D013346 xref: Subarachnoid:space -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002361 ! pia mater @@ -47260,7 +47568,7 @@ relationship: adjacent_to UBERON:0002361 ! pia mater relationship: adjacent_to UBERON:0002362 ! arachnoid mater relationship: contains UBERON:0001359 ! cerebrospinal fluid relationship: contains UBERON:0001981 {source="ISBN:0471888893"} ! blood vessel -relationship: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0010743 ! meningeal cluster [Term] id: UBERON:0000316 @@ -47325,7 +47633,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/308841008 xref: NCIT:C33919 xref: UMLS:C0230960 {source="ncithesaurus:Cytotrophoblast"} xref: VHOG:0000683 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: adjacent_to UBERON:0000371 ! syncytiotrophoblast relationship: adjacent_to UBERON:0000453 ! decidua basalis @@ -47418,7 +47725,6 @@ synonym: "wall of digestive tract" EXACT [] synonym: "wall of gut" EXACT [FMA:45653] xref: BTO:0000547 xref: FMA:45653 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001555 ! digestive tract @@ -47438,8 +47744,6 @@ xref: NCIT:C32707 xref: NCIT:C32711 xref: UMLS:C1182707 {source="ncithesaurus:Hair_Root"} is_a: UBERON:0000021 ! cutaneous appendage -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001037 ! strand of hair [Term] @@ -47478,6 +47782,7 @@ xref: BTO:0000635 xref: FMA:74596 xref: http://www.snomedbrowser.com/Codes/Details/328639002 xref: http://www.snomedbrowser.com/Codes/Details/5023006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002371 ! bone marrow intersection_of: UBERON:0002371 ! bone marrow intersection_of: composed_primarily_of CL:0000136 ! fat cell @@ -47593,7 +47898,6 @@ xref: BTO:0000894 xref: FMA:62977 xref: http://en.wikipedia.org/wiki/Myelin xref: ncithesaurus:Myelin -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: has_part CHEBI:36498 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! galactosylceramide relationship: has_part CHEBI:64583 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! sphingomyelin @@ -47627,7 +47931,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0026973 xref: MESH:D009186 xref: NCIT:C13261 xref: UMLS:C0026973 {source="ncithesaurus:Myelin_Sheath"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: composed_primarily_of GO:0043209 ! myelin sheath relationship: has_part UBERON:0000345 ! myelin @@ -47681,6 +47984,7 @@ xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA xref: Ophthalmic:nerve xref: UMLS:C0029082 {source="ncithesaurus:Ophthalmic_Nerve"} xref: VHOG:0001349 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001645 {notes="may be a distinct nerve in teleosts", source="multiple"} ! trigeminal nerve @@ -47730,7 +48034,6 @@ is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0008846 ! skeletal ligament relationship: attaches_to UBERON:0001676 ! occipital bone relationship: attaches_to UBERON:0002413 {notes="C7 in humans"} ! cervical vertebra -relationship: never_in_taxon NCBITaxon:9596 ! Pan relationship: part_of UBERON:0012477 {source="BTO"} ! dorsal part of neck relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: present_in_taxon NCBITaxon:9608 ! Canidae @@ -47785,7 +48088,6 @@ xref: EMAPA:26957 xref: FMA:55031 xref: http://www.snomedbrowser.com/Codes/Details/362121003 xref: MA:0003143 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004785 ! respiratory system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001042 ! chordate pharynx @@ -47841,7 +48143,6 @@ xref: UMLS:C1947929 {source="ncithesaurus:Prepucial_Gland_MMHCC"} is_a: UBERON:0003937 ! reproductive gland is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland relationship: fma_set_term FMA:71652 -relationship: never_in_taxon NCBITaxon:9606 {source="ISBN:0123813611", source="MP:0013329"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0000990 ! reproductive system @@ -47900,7 +48201,6 @@ xref: MESH:D007679 xref: NCIT:C12740 xref: Renal:medulla xref: UMLS:C0022664 {source="ncithesaurus:Renal_Medulla"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002113 ! kidney @@ -48080,7 +48380,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1135936 xref: http://www.snomedbrowser.com/Codes/Details/256965005 xref: NCIT:C33918 xref: UMLS:C1135936 {source="ncithesaurus:Syncytiotrophoblast"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: composed_primarily_of CL:0000525 ! syncytiotrophoblast cell relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast @@ -48377,7 +48676,6 @@ xref: UMLS:C0930083 {source="ncithesaurus:Apocrine_Sweat_Gland"} is_a: UBERON:0001820 {source="FMA"} ! sweat gland is_a: UBERON:0010243 {notes="The term apocrine sweat gland is a misnomer. While it was once thought that apocrine sweat glands were true apocrine glands, it is now known that they use merocrine excretion. However, they have retained the original name", source="Wikipedia"} ! merocrine gland disjoint_from: UBERON:0000423 ! eccrine sweat gland -relationship: never_in_taxon NCBITaxon:9822 {source="http://www.nal.usda.gov/awic/pubs/swine/swine.htm"} ! Sus relationship: part_of UBERON:0001003 {source="FMA"} ! skin epidermis [Term] @@ -48413,7 +48711,6 @@ intersection_of: UBERON:0011216 ! organ system subdivision intersection_of: composed_primarily_of UBERON:0001015 ! musculature relationship: capable_of GO:0003012 ! muscle system process relationship: composed_primarily_of UBERON:0001015 ! musculature -relationship: never_in_taxon NCBITaxon:6040 ! Porifera relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa [Term] @@ -48468,7 +48765,6 @@ is_a: UBERON:0013522 ! subdivision of tube relationship: develops_from UBERON:0003115 {source="EHDAA2"} ! pharyngeal arch 4 relationship: has_component UBERON:0001742 ! epiglottic cartilage relationship: has_component UBERON:0004982 ! mucosa of epiglottis -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0001051 ! hypopharynx [Term] @@ -48483,7 +48779,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/280626006 xref: MESH:A09.371.509.225 is_a: UBERON:0000479 ! tissue is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: surrounds UBERON:0000390 ! lens nucleus relationship: develops_from UBERON:0005614 ! lens anterior epithelium @@ -48500,7 +48795,6 @@ xref: FMA:58971 xref: http://www.snomedbrowser.com/Codes/Details/280628007 xref: MESH:A09.371.509.670 is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: surrounded_by UBERON:0000389 ! lens cortex @@ -48581,7 +48875,6 @@ xref: MESH:D013136 xref: Spiral:ganglion xref: VHOG:0001183 is_a: UBERON:0001714 ! cranial ganglion -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0004727 ! cochlear nerve relationship: extends_fibers_into UBERON:0004727 ! cochlear nerve @@ -48719,7 +49012,6 @@ xref: http://en.wikipedia.org/wiki/Ramus_of_the_mandible xref: http://www.snomedbrowser.com/Codes/Details/361739000 xref: MA:0002815 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001684 ! mandible @@ -48736,7 +49028,6 @@ xref: CALOHA:TS-0660 xref: FMA:59644 xref: http://www.snomedbrowser.com/Codes/Details/278940000 xref: Nasal:vestibule -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001707 ! nasal cavity @@ -48783,7 +49074,6 @@ xref: FMA:6258 xref: http://www.snomedbrowser.com/Codes/Details/181099004 xref: Sympathetic:trunk xref: XAO:0000211 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0000013 {source="FMA-abduced-lr"} ! sympathetic nervous system @@ -48852,7 +49142,6 @@ xref: BTO:0001846 xref: FMA:62652 xref: http://www.snomedbrowser.com/Codes/Details/30802009 is_a: UBERON:0000379 ! tracheal mucosa -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -48877,7 +49166,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1911 xref: MBA:669 xref: MESH:A08.186.211.730.885.213.571.735 xref: Visual:cortex -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe @@ -48909,8 +49197,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/320101005 xref: NCIT:C32710 xref: NCIT:C83189 xref: UMLS:C0221931 {source="ncithesaurus:Dermal_Papilla"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: composed_primarily_of CL:0000057 ! fibroblast relationship: part_of UBERON:0001992 ! papillary layer of dermis @@ -48968,7 +49256,6 @@ xref: GAID:692 xref: http://www.snomedbrowser.com/Codes/Details/362308002 xref: MESH:D013355 xref: Subdural:space -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0002362 ! arachnoid mater relationship: adjacent_to UBERON:0002363 ! dura mater @@ -49036,7 +49323,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227203 xref: http://www.snomedbrowser.com/Codes/Details/268426007 xref: NCIT:C32659 xref: UMLS:C0227203 {source="ncithesaurus:Gastric_Pit"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001199 {source="BTO"} ! mucosa of stomach @@ -49048,7 +49334,6 @@ synonym: "intermediate trophoblast" EXACT [FMA:86561] synonym: "interstitial trophoblast" RELATED [BTO:0002366] xref: BTO:0002366 xref: FMA:86561 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast @@ -49083,11 +49368,9 @@ xref: http://linkedlifedata.com/resource/umls/id/C1179826 xref: MA:0001737 xref: NCIT:C13103 xref: UMLS:C1179826 {source="ncithesaurus:Prostatic_Epithelium"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002367 ! prostate gland relationship: part_of UBERON:0002367 ! prostate gland @@ -49107,7 +49390,6 @@ xref: EMAPA:35446 xref: FMA:77597 xref: MA:0001147 is_a: UBERON:0001816 ! autonomic nerve plexus -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001810 ! nerve plexus intersection_of: part_of UBERON:0002005 ! enteric nervous system relationship: part_of UBERON:0002005 ! enteric nervous system @@ -49236,9 +49518,7 @@ name: arachnoid barrier layer def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] xref: BTO:0002498 xref: FMA:231559 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of GO:0005923 ! bicellular tight junction relationship: part_of UBERON:0000201 {source="cjm"} ! endothelial blood brain barrier relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater @@ -49261,7 +49541,6 @@ xref: Arachnoid:trabeculae xref: BTO:0002500 xref: FMA:83979 is_a: UBERON:0000440 ! trabecula -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002362 ! arachnoid mater relationship: has_part GO:0005581 ! collagen trimer @@ -49273,6 +49552,7 @@ name: trabecula def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [GO:0060343, http://en.wikipedia.org/wiki/Trabecula] subset: grouping_class subset: pheno_slim +synonym: "trabeculae" EXACT PLURAL [] xref: BTO:0002501 xref: FMA:85273 xref: http://en.wikipedia.org/wiki/Trabecula @@ -49347,8 +49627,8 @@ name: habenular trigone def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [http://en.wikipedia.org/wiki/Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] -synonym: "trigonum habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED LATIN [http://en.wikipedia.org/wiki/Habenular_trigone] +synonym: "trigonum habenulae" RELATED [BTO:0002700] xref: BAMS:hbt xref: BTO:0002700 xref: FMA:74868 @@ -49438,7 +49718,6 @@ xref: MESH:A08.186.211.730.885.213.270.700 xref: NLXANAT:090801 xref: Prefrontal:cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex @@ -49475,7 +49754,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0815008 xref: NCIT:C98712 xref: UMLS:C0815008 {source="ncithesaurus:Cerebral_Subcortex"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000955 ! brain [Term] @@ -49517,7 +49795,6 @@ xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery intersection_of: supplies UBERON:0001675 ! trigeminal ganglion @@ -49535,7 +49812,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227837 xref: http://www.snomedbrowser.com/Codes/Details/264460007 xref: NCIT:C12309 xref: UMLS:C0227837 {source="ncithesaurus:Endocervix"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000064 ! organ part @@ -49555,7 +49831,6 @@ synonym: "wall of uterus" EXACT [OBOL:automatic] xref: BTO:0003083 xref: FMA:17560 xref: http://www.snomedbrowser.com/Codes/Details/245485002 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall @@ -50022,7 +50297,6 @@ xref: UMLS:C0229962 {source="ncithesaurus:Body_Part"} xref: VHOG:0001758 xref: XAO:0003013 xref: ZFA:0001308 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: has_part UBERON:0000075 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! subdivision of skeletal system relationship: has_part UBERON:0034929 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! external soft tissue zone @@ -50100,7 +50374,6 @@ xref: UMLS:C1282438 {source="ncithesaurus:Extraembryonic_Structure"} xref: VHOG:0000292 xref: XAO:0004005 xref: ZFA:0000020 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: part_of UBERON:0016887 ! entire extraembryonic component @@ -50154,7 +50427,6 @@ xref: AEO:0000054 xref: BILA:0000054 xref: CARO:0000054 xref: EHDAA2:0003054 -xref: FBbt:00007276 xref: HAO:0000054 xref: TAO:0001512 xref: TGMA:0001846 @@ -50745,7 +51017,6 @@ xref: FBbt:00000038 xref: TAO:0000329 xref: TGMA:0000681 xref: ZFA:0000329 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure disjoint_from: UBERON:0003124 ! chorion membrane relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa @@ -50878,6 +51149,7 @@ xref: VHOG:0000153 xref: XAO:0000001 xref: ZFA:0000016 is_a: UBERON:0000923 ! germ layer +relationship: develops_from UBERON:0000307 ! blastula relationship: develops_from UBERON:0006601 ! presumptive ectoderm relationship: has_part CL:0000221 ! ectodermal cell relationship: immediate_transformation_of UBERON:0006601 {source="Bgee:AN"} ! presumptive ectoderm @@ -50915,6 +51187,7 @@ xref: VHOG:0000154 xref: XAO:0000090 xref: ZFA:0000017 is_a: UBERON:0000923 ! germ layer +relationship: develops_from UBERON:0000307 ! blastula relationship: develops_from UBERON:0006595 ! presumptive endoderm relationship: has_part CL:0000223 ! endodermal cell relationship: immediate_transformation_of UBERON:0006595 {source="Bgee:AN"} ! presumptive endoderm @@ -50958,10 +51231,10 @@ xref: VHOG:0000152 xref: XAO:0000050 xref: ZFA:0000041 is_a: UBERON:0000923 {notes="sometimes not considered primary"} ! germ layer +relationship: develops_from UBERON:0000307 ! blastula relationship: develops_from UBERON:0006603 ! presumptive mesoderm relationship: has_part CL:0000222 ! mesodermal cell relationship: immediate_transformation_of UBERON:0006603 {source="Bgee:AN"} ! presumptive mesoderm -relationship: never_in_taxon NCBITaxon:6040 ! Porifera relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa [Term] @@ -51041,7 +51314,6 @@ xref: TGMA:0000135 xref: UMLS:C1514977 {source="ncithesaurus:Stomodeum"} xref: XAO:0000269 xref: ZFA:0001290 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000924 ! ectoderm @@ -51135,7 +51407,7 @@ subset: uberon_slim synonym: "ventral cord" EXACT [GO:0007419] xref: BTO:0002328 xref: EFO:0000896 -xref: FBbt:00001102 +xref: FBbt:00005097 xref: http://en.wikipedia.org/wiki/Ventral_nerve_cord xref: MAT:0000339 xref: MIAA:0000339 @@ -51145,7 +51417,6 @@ is_a: UBERON:0005053 ! primary nerve cord intersection_of: UBERON:0005053 ! primary nerve cord intersection_of: intersects_midsagittal_plane_of UBERON:0013235 ! ventrum relationship: intersects_midsagittal_plane_of UBERON:0013235 ! ventrum -relationship: never_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0013235 ! ventrum [Term] @@ -51309,6 +51580,7 @@ xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"} xref: VHOG:0000543 xref: XAO:0000188 xref: ZFA:0000435 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle @@ -51399,10 +51671,6 @@ is_a: UBERON:0004921 {source="cjm"} ! subdivision of digestive tract is_a: UBERON:0010039 {source="cjm"} ! food storage organ relationship: capable_of GO:0001696 {evidence="ISBN:0486692132"} ! gastric acid secretion relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system -relationship: never_in_taxon NCBITaxon:7864 {source="Wikipedia"} ! Chimaeriformes -relationship: never_in_taxon NCBITaxon:7878 {source="Wikipedia"} ! Dipnomorpha -relationship: never_in_taxon NCBITaxon:7955 {source="ZFA"} ! Danio rerio -relationship: never_in_taxon NCBITaxon:9259 {source="Wikipedia"} ! Tachyglossidae relationship: only_in_taxon NCBITaxon:7742 {source="Wikipedia"} ! Vertebrata relationship: only_in_taxon NCBITaxon:7776 {notes="absent in lampreys and hagfishes", source="ISBN:0073040584"} ! Gnathostomata relationship: part_of UBERON:0001041 ! foregut @@ -51538,8 +51806,6 @@ relationship: contributes_to_morphology_of UBERON:0004535 ! cardiovascular syste relationship: develops_from UBERON:0004141 ! heart tube relationship: has_developmental_contribution_from UBERON:0002342 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! neural crest relationship: has_part UBERON:0004151 ! cardiac chamber -relationship: never_in_taxon NCBITaxon:6239 ! Caenorhabditis elegans -relationship: never_in_taxon NCBITaxon:7227 ! Drosophila melanogaster relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0015410 {source="MA"} ! heart plus pericardium @@ -51732,6 +51998,7 @@ relationship: composed_primarily_of CL:0002319 ! neural cell relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system property_value: dc-contributor https://github.com/cmungall relationship: develops_from UBERON:0001049 {gci_relation="part_of", gci_filler="NCBITaxon:7711"} ! neural tube +relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0006238 ! future brain relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: immediate_transformation_of UBERON:0006238 {source="Bgee:AN"} ! future brain @@ -51784,6 +52051,7 @@ xref: PBA:128011354 xref: UMLS:C0007776 {source="BIRNLEX:1494"} xref: UMLS:C0007776 {source="ncithesaurus:Cortex"} xref: VHOG:0000722 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory @@ -52096,7 +52364,6 @@ relationship: develops_from UBERON:0003072 {source="EHDAA2"} ! optic cup relationship: has_part CL:0000573 {source="FMA"} ! retinal cone cell relationship: has_part CL:0000604 {source="FMA"} ! retinal rod cell relationship: has_part CL:0000740 {source="FMA"} ! retinal ganglion cell -relationship: never_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0019207 ! chorioretinal region @@ -52198,7 +52465,6 @@ is_a: UBERON:0000026 {source="FBbt"} ! appendage is_a: UBERON:0015212 ! lateral structure relationship: has_quality PATO:0000402 {gci_relation="part_of", gci_filler="NCBITaxon:6657", source="Wikipedia"} ! branched relationship: in_lateral_side_of UBERON:0000033 ! head -relationship: never_in_taxon NCBITaxon:6843 ! Chelicerata relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0000033 ! head @@ -52270,7 +52536,6 @@ xref: NCIT:C12793 xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA xref: UMLS:C0038293 {source="ncithesaurus:Sternum"} xref: VHOG:0000856 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010363 {source="ISBN:0073040584"} ! endochondral element relationship: connected_to UBERON:0002228 ! rib @@ -52280,7 +52545,6 @@ relationship: connected_to UBERON:0008256 {gci_relation="part_of", gci_filler="N relationship: contributes_to_morphology_of UBERON:0003252 ! thoracic rib cage property_value: dc-contributor https://github.com/alex-dececchi property_value: dc-contributor https://github.com/cmungall -relationship: never_in_taxon NCBITaxon:8570 {source="Wikipedia"} ! Serpentes relationship: only_in_taxon NCBITaxon:32523 {source="ISBN:0073040584"} ! Tetrapoda relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000915 ! thoracic segment of trunk @@ -52356,7 +52620,6 @@ xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA xref: UMLS:C0032225 {source="ncithesaurus:Pleural_Tissue"} xref: VHOG:0000394 is_a: UBERON:0000042 ! serous membrane -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: has_part UBERON:0002400 ! parietal pleura intersection_of: has_part UBERON:0002401 ! visceral pleura @@ -52454,7 +52717,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/182047004 xref: MA:0002821 xref: NCIT:C33814 xref: UMLS:C0162370 {source="ncithesaurus:Trochanter"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: contributes_to_morphology_of UBERON:0000981 ! femur @@ -52596,6 +52858,7 @@ synonym: "wing of thorax" RELATED [OBOL:automatic] xref: FBbt:00004729 xref: HAO:0001089 xref: TGMA:0000196 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000023 ! wing intersection_of: UBERON:0000023 ! wing intersection_of: develops_from UBERON:0000939 ! imaginal disc @@ -52641,6 +52904,7 @@ xref: http://en.wikipedia.org/wiki/Haltere xref: MAT:0000203 xref: MIAA:0000203 xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000026 {source="FBbt"} ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of UBERON:0000914 ! organismal segment @@ -52686,7 +52950,6 @@ xref: UMLS:C0032639 {source="ncithesaurus:Pons_Varolii"} xref: UMLS:C1280999 {source="BIRNLEX:733"} xref: VHOG:0001176 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001895 ! metencephalon relationship: contributes_to_morphology_of UBERON:0002298 ! brainstem relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio @@ -52971,7 +53234,6 @@ xref: MAT:0000168 xref: MIAA:0000168 xref: TGMA:0000560 xref: WBbt:0005319 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -53006,6 +53268,7 @@ xref: UMLS:C0042149 {source="ncithesaurus:Uterus"} xref: VHOG:0001137 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0005795 ! embryonic uterus relationship: immediate_transformation_of UBERON:0005795 ! embryonic uterus relationship: only_in_taxon NCBITaxon:32525 ! Theria @@ -53353,7 +53616,6 @@ disjoint_from: UBERON:0004456 ! entire sense organ system relationship: capable_of GO:0003016 ! respiratory system process relationship: capable_of GO:0007585 ! respiratory gaseous exchange by respiratory system relationship: existence_ends_during UBERON:0000066 ! fully formed stage -relationship: never_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha relationship: only_in_taxon NCBITaxon:33213 ! Bilateria [Term] @@ -53506,8 +53768,6 @@ disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: capable_of GO:0007588 ! excretion relationship: existence_ends_during UBERON:0000066 ! fully formed stage -relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} ! Xenoturbella -relationship: never_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa [Term] @@ -53519,7 +53779,6 @@ synonym: "systema cardiovasculare" RELATED LATIN [http://en.wikipedia.org/wiki/C xref: AAO:0000959 xref: CALOHA:TS-2103 xref: Circulatory:system -xref: FBbt:00005057 xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA xref: VHOG:0001248 is_a: UBERON:0000467 ! anatomical system @@ -53537,9 +53796,6 @@ disjoint_from: UBERON:0004456 ! entire sense organ system relationship: capable_of GO:0003013 ! circulatory system process relationship: dubious_for_taxon NCBITaxon:6231 {notes="WBbt coelomocyte currently classified as circulating cell"} ! Nematoda relationship: existence_ends_during UBERON:0000066 ! fully formed stage -relationship: never_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha -relationship: never_in_taxon NCBITaxon:6073 ! Cnidaria -relationship: never_in_taxon NCBITaxon:6157 ! Platyhelminthes relationship: only_in_taxon NCBITaxon:33213 ! Bilateria [Term] @@ -53556,7 +53812,6 @@ xref: FMA:33760 xref: http://en.wikipedia.org/wiki/Body_of_ulna xref: http://www.snomedbrowser.com/Codes/Details/302520004 xref: NCIT:C120676 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001424 ! ulna @@ -53577,7 +53832,6 @@ xref: MESH:D006458 xref: MIAA:0000054 xref: TGMA:0000000 is_a: UBERON:0000463 ! organism substance -relationship: never_in_taxon NCBITaxon:33511 ! Deuterostomia relationship: part_of UBERON:0001009 ! circulatory system [Term] @@ -53591,7 +53845,6 @@ xref: FMA:33773 xref: galen:HeadOfRadius xref: http://en.wikipedia.org/wiki/Head_of_radius xref: http://www.snomedbrowser.com/Codes/Details/181941003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint @@ -53744,11 +53997,11 @@ disjoint_from: UBERON:0002423 ! hepatobiliary system disjoint_from: UBERON:0004456 ! entire sense organ system relationship: capable_of GO:0050877 ! nervous system process relationship: composed_primarily_of CL:0002319 ! neural cell +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0016880 ! future nervous system relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: has_part CL:0000540 ! neuron relationship: immediate_transformation_of UBERON:0016880 {source="Bgee:AN"} ! future nervous system -relationship: never_in_taxon NCBITaxon:6040 ! Porifera relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa [Term] @@ -53798,8 +54051,8 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 {source="FBbt", source="cjm"} ! organ system subdivision relationship: develops_from UBERON:0001049 {gci_relation="part_of", gci_filler="NCBITaxon:7742", evidence="definitional"} ! neural tube relationship: develops_from UBERON:0016879 ! future central nervous system +relationship: develops_from UBERON:0016880 ! future nervous system relationship: immediate_transformation_of UBERON:0016879 {source="Bgee:AN"} ! future central nervous system -relationship: never_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001016 ! nervous system @@ -53858,7 +54111,6 @@ synonym: "commissure" BROAD [] synonym: "commissure of neuraxis" EXACT [FMA:83906] synonym: "neuraxis commissure" EXACT [FMA:83906] synonym: "white matter commissure" NARROW [CUMBO:CUMBO] -xref: FBbt:00005103 xref: FMA:83906 xref: http://en.wikipedia.org/wiki/Commissure xref: http://linkedlifedata.com/resource/umls/id/C1185742 @@ -54033,7 +54285,6 @@ xref: FMA:33782 xref: http://en.wikipedia.org/wiki/Body_of_radius xref: http://www.snomedbrowser.com/Codes/Details/302518002 xref: NCIT:C120674 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001423 ! radius bone @@ -54121,7 +54372,6 @@ xref: TAO:0000282 xref: VHOG:0001674 xref: XAO:0003194 xref: ZFA:0000282 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: capable_of_part_of GO:0007600 ! sensory perception relationship: part_of UBERON:0004456 ! entire sense organ system @@ -54194,7 +54444,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/50870008 xref: MA:0001499 xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA is_a: UBERON:0002209 {source="FMA"} ! fibrous joint -is_a: UBERON:0010313 ! neural crest-derived structure relationship: connects UBERON:0001091 ! calcareous tooth relationship: connects UBERON:0004103 ! alveolar ridge relationship: part_of UBERON:0001708 ! jaw skeleton @@ -54284,6 +54533,7 @@ xref: NCIT:C14128 xref: UMLS:C0043425 {source="ncithesaurus:Yolk_Sac"} xref: VHOG:0000830 xref: Yolk:sac +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0005631 {seeAlso="https://github.com/obophenotype/uberon/issues/635"} ! extraembryonic membrane is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac @@ -54351,6 +54601,7 @@ xref: UMLS:C0031354 {source="ncithesaurus:Pharynx"} xref: VHOG:0000462 xref: XAO:0003227 xref: ZFA:0000056 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006562 ! pharynx relationship: continuous_with UBERON:0001043 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! esophagus relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region of foregut @@ -54397,6 +54648,7 @@ xref: UMLS:C0014876 {source="ncithesaurus:Esophagus"} xref: VHOG:0000450 xref: XAO:0000127 xref: ZFA:0000204 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 {source="FMA", source="MA"} ! organ is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity element @@ -54506,6 +54758,7 @@ xref: TGMA:0001020 xref: UMLS:C0231053 {source="ncithesaurus:Hindgut"} xref: VHOG:0000459 xref: XAO:0000104 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme relationship: part_of RO:0002577 ! system @@ -54623,7 +54876,6 @@ xref: NCIT:C12246 xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA xref: UMLS:C0020629 {source="ncithesaurus:Hypopharynx"} xref: VHOG:0000445 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: continuous_with UBERON:0013472 ! upper esophagus relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx @@ -54768,11 +55020,9 @@ xref: MESH:D024521 xref: MIAA:0000336 xref: Mushroom:body is_a: BFO:0000040 ! material entity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory relationship: capable_of_part_of GO:0008355 {source="Wikipedia"} ! olfactory learning -relationship: never_in_taxon NCBITaxon:6217 ! Nemertea relationship: only_in_taxon NCBITaxon:33317 {notes="annelids and arthropods"} ! Protostomia relationship: part_of UBERON:0000955 ! brain relationship: present_in_taxon NCBITaxon:6340 ! Annelida @@ -54975,7 +55225,6 @@ xref: NCIT:C32577 xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA xref: UMLS:C0224521 {source="ncithesaurus:Facet_Joint"} xref: Zygapophysial:joint -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0002217 ! synovial joint intersection_of: connects UBERON:0001079 ! prezygapophysis @@ -55208,7 +55457,7 @@ xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA xref: TAO:0000126 xref: UMLS:C0223084 {source="ncithesaurus:Vertebral_Body"} xref: ZFA:0000126 -is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0001474 ! bone element is_a: UBERON:0016491 ! vertebral centrum element intersection_of: UBERON:0016491 ! vertebral centrum element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -55600,7 +55849,6 @@ xref: VHOG:0001733 xref: XAO:0000431 xref: ZFA:0000694 is_a: UBERON:0003913 ! tooth-like structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0008281 ! tooth bud relationship: has_developmental_contribution_from UBERON:0000930 {source="XAO-modified"} ! stomodeum @@ -55609,10 +55857,6 @@ relationship: has_part UBERON:0001751 ! dentine relationship: has_part UBERON:0001752 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! enamel relationship: immediate_transformation_of UBERON:0008281 {source="cjm"} ! tooth bud relationship: in_lateral_side_of UBERON:0011595 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! jaw region -relationship: never_in_taxon NCBITaxon:189497 {source="Wikipedia"} ! Echidna -relationship: never_in_taxon NCBITaxon:8782 ! Aves -relationship: never_in_taxon NCBITaxon:9257 {source="http://www.ncbi.nlm.nih.gov/pubmed/10210685"} ! Ornithorhynchus -relationship: never_in_taxon NCBITaxon:9761 ! Mysticeti relationship: part_of UBERON:0011595 {gci_relation="part_of", gci_filler="NCBITaxon:32523"} ! jaw region [Term] @@ -55956,7 +56200,6 @@ relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue relationship: develops_from UBERON:0010084 ! future diaphragm relationship: immediate_transformation_of UBERON:0010084 {evidence="definitional"} ! future diaphragm relationship: innervated_by UBERON:0001884 ! phrenic nerve -relationship: never_in_taxon NCBITaxon:8782 {source="Comparative_anatomy_and_evolution"} ! Aves relationship: only_in_taxon NCBITaxon:40674 {source="http://www.ncbi.nlm.nih.gov/pubmed/23586979"} ! Mammalia relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0001004 ! respiratory system @@ -56213,7 +56456,6 @@ xref: NCIT:C33150 xref: UMLS:C0224362 {source="ncithesaurus:Musculus_Latissimus_Dorsi"} xref: VHOG:0000930 is_a: UBERON:0001482 ! muscle of shoulder -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass relationship: has_muscle_antagonist UBERON:0001476 {source="dbpedia"} ! deltoid @@ -56238,7 +56480,6 @@ xref: Lobes xref: MA:0000360 xref: NCIT:C49579 xref: UMLS:C0447541 {source="ncithesaurus:Liver_Lobe"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe relationship: part_of UBERON:0002107 ! liver @@ -56642,7 +56883,6 @@ xref: Subscapularis:muscle xref: UMLS:C0584884 {source="ncithesaurus:Subscapularis"} xref: VHOG:0000850 is_a: UBERON:0001482 ! muscle of shoulder -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010891 ! pectoral complex muscle is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010993 ! subscapularis pre-muscle mass @@ -56701,7 +56941,6 @@ intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: composed_primarily_of UBERON:0010913 ! vertebral element disjoint_from: UBERON:0008260 ! spine appendage relationship: composed_primarily_of UBERON:0010913 ! vertebral element -relationship: never_in_taxon NCBITaxon:7762 ! Myxinidae relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0011138 {source="cjm"} ! postcranial axial skeletal system relationship: protects UBERON:0002240 ! spinal cord @@ -56720,7 +56959,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/280734009 xref: MA:0001454 xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA xref: Vertebral:foramen -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0002240 ! spinal cord @@ -56881,7 +57119,6 @@ xref: EFO:0000889 xref: EHDAA2:0003141 xref: EMAPA:32717 xref: EV:0100378 -xref: FBbt:00003525 xref: FMA:14070 xref: GAID:167 xref: galen:SmoothMuscle @@ -57255,7 +57492,6 @@ xref: FMA:14480 xref: http://en.wikipedia.org/wiki/Bare_area_of_the_liver xref: http://www.snomedbrowser.com/Codes/Details/279965008 xref: MA:0000359 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver @@ -57301,8 +57537,8 @@ xref: MA:0000123 xref: NCIT:C12271 xref: UMLS:C0227590 {source="ncithesaurus:Tail_of_the_Pancreas"} xref: VHOG:0000452 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas @@ -57380,11 +57616,11 @@ xref: NCIT:C12381 xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA xref: UMLS:C0007531 {source="ncithesaurus:Cecum"} xref: VHOG:0001559 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009854 ! digestive tract diverticulum relationship: continuous_with UBERON:0001156 {source="Wikipedia"} ! ascending colon relationship: contributes_to_morphology_of UBERON:0000059 ! large intestine relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut -relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} ! Teleostei relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0000059 {source="MA"} ! large intestine relationship: part_of UBERON:0001155 {source="EHDAA2"} ! colon @@ -57494,6 +57730,7 @@ xref: MIAA:0000311 xref: NCIT:C12265 xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA xref: UMLS:C0227375 {source="ncithesaurus:Ascending_Colon"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -57520,6 +57757,7 @@ xref: NCIT:C12385 xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA xref: Transverse:colon xref: UMLS:C0227386 {source="ncithesaurus:Transverse_Colon"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001158 ! descending colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -57546,6 +57784,7 @@ xref: MIAA:0000313 xref: NCIT:C12268 xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA xref: UMLS:C0227389 {source="ncithesaurus:Descending_Colon"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001159 ! sigmoid colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut @@ -57578,6 +57817,7 @@ xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA xref: Sigmoid:colon xref: UMLS:C0227391 {source="ncithesaurus:Sigmoid_Colon"} xref: UMLS:C0682612 {source="ncithesaurus:Sigmoid_Flexure"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001052 ! rectum relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut @@ -57612,6 +57852,7 @@ xref: MESH:A03.492.766.419 xref: NCIT:C12257 xref: UMLS:C0017129 {source="ncithesaurus:Fundus_of_the_Stomach"} xref: VHOG:0000421 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009870 ! zone of stomach relationship: contributes_to_morphology_of UBERON:0000945 ! stomach relationship: has_part UBERON:0010038 ! fundic gastric gland @@ -57741,6 +57982,7 @@ xref: MESH:A03.492.766.716 xref: NCIT:C12259 xref: Pyloric:antrum xref: UMLS:C0034193 {source="ncithesaurus:Antrum_Pylori"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009870 {source="FMA"} ! zone of stomach relationship: continuous_with UBERON:0001161 ! body of stomach relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus @@ -57775,6 +58017,7 @@ xref: MESH:A03.492.766.799 xref: NCIT:C12260 xref: UMLS:C0034196 {source="ncithesaurus:Pylorus"} xref: VHOG:0000420 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach intersection_of: has_part UBERON:0001165 ! pyloric antrum @@ -57878,7 +58121,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0682620 xref: MA:0002498 xref: NCIT:C33341 xref: UMLS:C0682620 {source="ncithesaurus:Portal_Lobule"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 {source="FMA"} ! lobule relationship: contributes_to_morphology_of UBERON:0001280 ! liver parenchyma relationship: part_of UBERON:0001280 {source="MA", source="MP"} ! liver parenchyma @@ -57896,7 +58138,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/272214009 xref: MA:0002496 xref: NCIT:C32992 xref: UMLS:C0227519 {source="ncithesaurus:Liver_Acinus"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009842 {source="FMA"} ! glandular acinus is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001280 {source="cjm"} ! liver parenchyma @@ -57987,6 +58228,10 @@ relationship: channel_for UBERON:0001970 ! bile relationship: channels_into UBERON:0001174 ! common bile duct relationship: continuous_with UBERON:0001176 {source="Wikipedia"} ! right hepatic duct relationship: continuous_with UBERON:0001177 {source="Wikipedia"} ! left hepatic duct +relationship: develops_from UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0001173 ! biliary tree +relationship: develops_from UBERON:0002294 ! biliary system +relationship: develops_from UBERON:0002423 ! hepatobiliary system relationship: develops_from UBERON:0010081 ! future common hepatic duct relationship: immediate_transformation_of UBERON:0010081 {evidence="definitional"} ! future common hepatic duct relationship: part_of UBERON:0005604 {source="MA"} ! extrahepatic part of hepatic duct @@ -58724,7 +58969,6 @@ intersection_of: part_of UBERON:0001166 ! pylorus relationship: adjacent_to UBERON:0002114 ! duodenum relationship: continuous_with UBERON:0008858 ! pyloric canal relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus -relationship: never_in_taxon NCBITaxon:8355 ! Xenopus laevis relationship: part_of UBERON:0001166 ! pylorus [Term] @@ -58963,7 +59207,6 @@ xref: NCIT:C12771 xref: Peyer's:patch xref: UMLS:C0031272 {source="ncithesaurus:Peyer_s_Patch"} is_a: UBERON:0001962 {source="FMA", source="MA"} ! gut-associated lymphoid tissue -relationship: never_in_taxon NCBITaxon:8459 {source="http://www.ncbi.nlm.nih.gov/pubmed/PMID:20181529"} ! Testudines relationship: only_in_taxon NCBITaxon:32524 {source="http://www.ncbi.nlm.nih.gov/pubmed/PMID:20181529"} ! Amniota relationship: part_of UBERON:0000030 {editor_note="check this"} ! lamina propria relationship: part_of UBERON:0001242 ! intestinal mucosa @@ -59282,7 +59525,6 @@ xref: MESH:D007682 xref: NCIT:C12887 xref: Renal:pelvis xref: UMLS:C0227666 {source="ncithesaurus:Renal_Pelvis"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0004111 ! anatomical conduit disjoint_from: UBERON:0002355 ! pelvic region of trunk @@ -59316,7 +59558,6 @@ xref: MESH:D007672 xref: NCIT:C12739 xref: Renal:cortex xref: UMLS:C0022655 {source="ncithesaurus:Renal_Cortex"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002113 ! kidney @@ -59339,10 +59580,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/1106008 xref: MA:0001644 xref: Major:calyx is_a: UBERON:0006517 ! kidney calyx -is_a: UBERON:0013126 ! vein of abdomen -is_a: UBERON:0014401 ! renal venous blood vessel -relationship: drains UBERON:0001227 ! minor calyx -relationship: part_of RO:0002577 ! system [Term] id: UBERON:0001227 @@ -59359,10 +59596,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/26293004 xref: MA:0001645 xref: Minor:calyx is_a: UBERON:0006517 ! kidney calyx -is_a: UBERON:0013126 ! vein of abdomen -is_a: UBERON:0014401 ! renal venous blood vessel -relationship: drains UBERON:0001228 ! renal papilla -relationship: part_of RO:0002577 ! system [Term] id: UBERON:0001228 @@ -59382,7 +59615,6 @@ xref: MESH:D007679 xref: NCIT:C33460 xref: Renal:papilla xref: UMLS:C0022666 {source="ncithesaurus:Renal_Papilla"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis @@ -59417,7 +59649,6 @@ xref: TAO:0005281 xref: UMLS:C0227635 {source="ncithesaurus:Renal_Corpuscle"} xref: VHOG:0001262 xref: ZFA:0005281 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney relationship: contributes_to_morphology_of UBERON:0001285 ! nephron @@ -59496,6 +59727,7 @@ xref: Renal:tubule xref: TAO:0001287 xref: UMLS:C0022674 {source="ncithesaurus:Renal_Tubule"} xref: ZFA:0001287 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0009773 {source="GO"} ! renal tubule intersection_of: UBERON:0003914 {source="GO", source="MA", source="ZFA"} ! epithelial tube @@ -59535,7 +59767,6 @@ xref: MA:0000371 xref: MESH:D007685 xref: TAO:0005294 xref: ZFA:0005294 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006555 ! excretory tube relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: part_of UBERON:0001285 {notes="checkme", source="GO"} ! nephron @@ -59613,7 +59844,6 @@ xref: VHOG:0001481 xref: XAO:0000165 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: capable_of GO:0006704 ! glucocorticoid biosynthetic process @@ -59658,7 +59888,6 @@ xref: UMLS:C0001629 {source="ncithesaurus:Adrenal_Medulla"} xref: VHOG:0001378 xref: XAO:0000166 is_a: UBERON:0000958 ! medulla of organ -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002369 ! adrenal gland @@ -59920,7 +60149,7 @@ synonym: "proctodeum" RELATED [] xref: BTO:0001680 xref: CALOHA:TS-2005 xref: EV:0100082 -xref: FBbt:00003148 +xref: FBbt:00047153 xref: FMA:15711 xref: GAID:312 xref: galen:Anus @@ -59982,7 +60211,6 @@ xref: NCIT:C32582 xref: UMLS:C0230240 {source="ncithesaurus:Falciform_Ligament"} xref: VHOG:0000355 is_a: CARO:0000003 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0013139 ! ligament of liver intersection_of: UBERON:0008845 ! nonskeletal ligament intersection_of: attaches_to UBERON:0000309 ! body wall @@ -60012,7 +60240,6 @@ xref: MA:0002670 xref: NCIT:C33601 xref: Splenic:hilum xref: UMLS:C0229685 {source="ncithesaurus:Splenic_Hilum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002106 ! spleen @@ -60041,7 +60268,6 @@ xref: MA:0002672 xref: NCIT:C33602 xref: UMLS:C1519475 {source="ncithesaurus:Splenic_Lymphoid_Follicle"} is_a: UBERON:0000444 ! lymphoid follicle -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000444 ! lymphoid follicle intersection_of: part_of UBERON:0002106 ! spleen relationship: contains_process GO:0002319 ! memory B cell differentiation @@ -60073,6 +60299,7 @@ xref: MA:0000756 xref: NCIT:C12992 xref: Red:pulp xref: UMLS:C0229687 {source="ncithesaurus:Splenic_Red_Pulp"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1000023 ! spleen pulp relationship: composed_primarily_of CL:0000542 ! lymphocyte relationship: contributes_to_morphology_of UBERON:0002106 ! spleen @@ -60095,7 +60322,6 @@ xref: Marginal:zone xref: NCIT:C49767 xref: UMLS:C1711368 {source="ncithesaurus:Marginal_Zone"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0004879 ! marginal zone of embryo relationship: adjacent_to UBERON:0001250 ! red pulp of spleen relationship: adjacent_to UBERON:0001959 ! white pulp of spleen @@ -60115,7 +60341,6 @@ xref: FMA:15892 xref: http://www.snomedbrowser.com/Codes/Details/392273001 xref: http://www.snomedbrowser.com/Codes/Details/47879001 xref: MA:0002652 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0000056 ! ureter @@ -60136,7 +60361,6 @@ xref: FMA:15896 xref: http://www.snomedbrowser.com/Codes/Details/2771005 xref: MA:0002653 is_a: UBERON:0000030 ! lamina propria -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0000056 ! ureter @@ -60156,9 +60380,7 @@ synonym: "ureter urothelium" EXACT [] xref: EMAPA:28089 xref: FMA:15897 xref: MA:0002655 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! urothelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0000056 ! ureter relationship: contributes_to_morphology_of UBERON:0000056 ! ureter @@ -60205,7 +60427,6 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018707 {source="BTO"} ! bladder organ relationship: develops_from UBERON:0000164 {notes="upper part of UG sinus"} ! primitive urogenital sinus relationship: located_in UBERON:0002323 ! coelemic cavity lumen -relationship: never_in_taxon NCBITaxon:8782 {editor="BGEE:Ann", id="GOTAX:0010073", source="https://github.com/obophenotype/uberon/issues/454"} ! Aves relationship: part_of UBERON:0001556 {source="FMA"} ! lower urinary tract [Term] @@ -60229,7 +60450,6 @@ xref: MA:0002493 xref: NCIT:C48941 xref: UMLS:C0458421 {source="ncithesaurus:Bladder_Wall"} is_a: UBERON:0000060 ! anatomical wall -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder @@ -60260,7 +60480,6 @@ xref: MA:0002492 xref: NCIT:C12331 xref: UMLS:C0447586 {source="ncithesaurus:Bladder_Trigone"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0006082 ! fundus of urinary bladder @@ -60287,7 +60506,6 @@ xref: MA:0002491 xref: NCIT:C12336 xref: UMLS:C0227716 {source="ncithesaurus:Bladder_Neck"} is_a: UBERON:0001560 ! neck of organ -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder @@ -60320,7 +60538,6 @@ xref: MA:0001692 xref: NCIT:C32205 xref: UMLS:C0227691 {source="ncithesaurus:Bladder_Mucosa"} is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder @@ -60375,7 +60592,6 @@ xref: MA:0001695 xref: NCIT:C48940 xref: UMLS:C1706967 {source="ncithesaurus:Bladder_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder @@ -60424,7 +60640,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/247604006 xref: MA:0002417 xref: NCIT:C49268 xref: UMLS:C0227578 {source="ncithesaurus:Pancreatic_Acinus"} -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013232 ! serous acinus intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0000017 ! exocrine pancreas @@ -60485,6 +60701,7 @@ name: trabecula of spleen def: "A trabecula that is part of a spleen." [OBOL:automatic] synonym: "spleen trabeculum" EXACT [] synonym: "splenic trabecula" EXACT [] +synonym: "trabeculae of spleen" EXACT PLURAL [] xref: EMAPA:35808 xref: FMA:16027 xref: http://en.wikipedia.org/wiki/Trabeculae_of_spleen @@ -60494,7 +60711,6 @@ xref: MA:0000758 xref: NCIT:C33607 xref: UMLS:C0229688 {source="ncithesaurus:Splenic_Trabecula"} is_a: UBERON:0000440 ! trabecula -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen @@ -60514,7 +60730,6 @@ xref: MA:0002671 xref: NCIT:C33599 xref: UMLS:C0735011 {source="ncithesaurus:Splenic_Cord"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen [Term] @@ -60585,7 +60800,6 @@ xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001427 xref: UMLS:C0000962 {source="ncithesaurus:Acetabulum"} xref: VHOG:0000974 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 {source="Phenoscape"} ! ilium relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint @@ -60620,6 +60834,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/360010001 xref: NCIT:C33291 xref: UMLS:C0684083 {source="ncithesaurus:Pelvic_Girdle"} xref: VSAO:0000304 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007823 ! appendage girdle region @@ -60698,7 +60913,6 @@ property_value: dc-contributor https://github.com/mellybelly relationship: develops_from UBERON:0010714 {source="cjm"} ! iliac cartilage element relationship: dubious_for_taxon NCBITaxon:8570 {source="Wikipedia"} ! Serpentes relationship: in_lateral_side_of UBERON:0007832 ! pelvic girdle skeleton -relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} ! Teleostei relationship: part_of UBERON:0001272 {source="FMA"} ! innominate bone relationship: part_of UBERON:0007832 {source="VSAO"} ! pelvic girdle skeleton @@ -60877,7 +61091,7 @@ xref: MA:0002499 xref: NCIT:C33342 xref: Portal:triad xref: UMLS:C0227514 {source="ncithesaurus:Portal_Triad"} -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: contributes_to_morphology_of UBERON:0001171 ! portal lobule relationship: has_part UBERON:0001193 ! hepatic artery @@ -60943,7 +61157,6 @@ xref: UMLS:C0227523 {source="ncithesaurus:Hepatic_Sinusoid"} xref: VHOG:0000708 xref: ZFA:0005091 is_a: UBERON:0003909 ! sinusoid -is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0002107 ! liver @@ -61006,7 +61219,6 @@ xref: NCIT:C32202 xref: TAO:0005163 xref: UMLS:C0005393 {source="ncithesaurus:Bile_Canaliculus"} xref: ZFA:0005163 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="FMA", source="ZFA"} ! anatomical space relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus @@ -61035,7 +61247,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0736346 xref: MA:0001651 xref: NCIT:C32387 xref: Renal:column -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:8410073 ! medullary region of kidney @@ -61068,8 +61279,17 @@ xref: ZFA:0005282 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0002113 ! kidney +relationship: develops_from UBERON:0000468 ! multicellular organism +relationship: develops_from UBERON:0000916 ! abdomen +relationship: develops_from UBERON:0001008 ! renal system +relationship: develops_from UBERON:0002100 ! trunk +relationship: develops_from UBERON:0002113 ! kidney +relationship: develops_from UBERON:0002417 ! abdominal segment of trunk relationship: develops_from UBERON:0004208 {evidence="definitional"} ! nephrogenic mesenchyme relationship: develops_from UBERON:0010532 ! primitive nephron +relationship: develops_from UBERON:0011143 ! upper urinary tract +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: immediate_transformation_of UBERON:0010532 {source="Bgee:AN"} ! primitive nephron relationship: part_of UBERON:0007684 {source="FMA"} ! uriniferous tubule @@ -61104,7 +61324,6 @@ xref: TAO:0005312 xref: UMLS:C0227643 {source="ncithesaurus:Urinary_Space"} xref: ZFA:0005283 xref: ZFA:0005312 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: contributes_to_morphology_of UBERON:0001230 ! glomerular capsule relationship: part_of UBERON:0001230 ! glomerular capsule @@ -61304,7 +61523,6 @@ xref: CALOHA:TS-0508 xref: EMAPA:28310 xref: FMA:17733 xref: MA:0001653 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0000362 ! renal medulla @@ -61328,7 +61546,6 @@ xref: CALOHA:TS-0506 xref: EMAPA:28349 xref: FMA:17734 xref: MA:0001652 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla relationship: only_in_taxon NCBITaxon:40674 {source="GO:0072053"} ! Mammalia @@ -61364,7 +61581,6 @@ xref: MIAA:0000319 xref: NCIT:C12313 xref: UMLS:C0014180 {source="ncithesaurus:Endometrium"} xref: VHOG:0001285 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000995 ! uterus @@ -61484,6 +61700,10 @@ is_a: UBERON:0035651 ! glans intersection_of: UBERON:0035651 ! glans intersection_of: part_of UBERON:0000989 ! penis relationship: contributes_to_morphology_of UBERON:0000989 ! penis +relationship: develops_from UBERON:0000079 ! male reproductive system +relationship: develops_from UBERON:0003101 ! male organism +relationship: develops_from UBERON:0004053 ! external male genitalia +relationship: develops_from UBERON:0006261 ! male genital tubercle relationship: develops_from UBERON:0013239 ! future glans penis relationship: immediate_transformation_of UBERON:0013239 {source="Bgee:AN"} ! future glans penis relationship: part_of UBERON:0000989 ! penis @@ -61509,7 +61729,6 @@ xref: MESH:D012611 xref: NCIT:C12785 xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA xref: UMLS:C0036471 {source="ncithesaurus:Scrotum"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0011756 {source="Wikipedia"} ! male genital swelling @@ -61670,7 +61889,6 @@ xref: EMAPA:35267 xref: FMA:18659 xref: http://www.snomedbrowser.com/Codes/Details/258586009 xref: MA:0002414 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034922 ! cell cluster relationship: part_of UBERON:0001305 ! ovarian follicle @@ -61690,7 +61908,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/258491008 xref: MA:0001706 xref: NCIT:C49265 xref: UMLS:C0227877 {source="ncithesaurus:Ovarian_Capsule"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003893 ! capsule @@ -62161,7 +62378,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279692004 xref: MA:0001738 xref: NCIT:C52726 xref: UMLS:C0227970 {source="ncithesaurus:Prostate_Gland_Lobe"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe @@ -62228,7 +62444,6 @@ xref: FMA:19638 xref: http://www.snomedbrowser.com/Codes/Details/35900000 xref: MA:0002727 is_a: UBERON:0000014 ! zone of skin -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000989 ! penis @@ -62334,7 +62549,6 @@ xref: MA:0002646 xref: NCIT:C13101 xref: Prostatic:urethra xref: UMLS:C0458450 {source="ncithesaurus:Prostatic_Portion_of_the_Male_Urethra"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra relationship: located_in UBERON:0002367 {source="FMA"} ! prostate gland @@ -62352,7 +62566,6 @@ synonym: "pars intermedia urethrae" EXACT LATIN [FMA:19674, FMA:TA] synonym: "pars membranacea (urethrae)" EXACT [] xref: EMAPA:37542 {source="MA:th"} xref: MA:0002647 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000057 ! urethra @@ -62377,7 +62590,6 @@ xref: FMA:19675 xref: http://www.snomedbrowser.com/Codes/Details/263341006 xref: MA:0002644 xref: Penile:urethra -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra @@ -62401,7 +62613,6 @@ xref: FMA:19683 xref: http://www.snomedbrowser.com/Codes/Details/279477005 xref: MA:0001688 is_a: UBERON:0000414 {source="MP"} ! mucous gland -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000057 ! urethra relationship: contributes_to_morphology_of UBERON:0000057 ! urethra @@ -62604,7 +62815,6 @@ xref: MESH:D006924 xref: NCIT:C32750 xref: UMLS:C0020412 {source="ncithesaurus:Hymen"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 {source="FMA"} ! vagina @@ -62736,8 +62946,6 @@ xref: Lacrimal:sac xref: MA:0001298 xref: NCIT:C32909 xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"} -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002392 ! nasolacrimal duct @@ -62772,7 +62980,6 @@ xref: UMLS:C0013444 {source="ncithesaurus:External_Acoustic_Meatus"} xref: VHOG:0000977 is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: capable_of_part_of GO:0055127 ! vibrational conductance of sound to the inner ear relationship: develops_from UBERON:0005872 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469"} ! 1st arch pharyngeal cleft relationship: part_of UBERON:0001691 {source="FMA"} ! external ear @@ -62800,6 +63007,7 @@ xref: NCIT:C32069 xref: UMLS:C0230120 {source="ncithesaurus:Anal_Region"} xref: VHOG:0000395 xref: WBbt:0006919 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000475 ! organism subdivision relationship: has_developmental_contribution_from UBERON:0000931 {evidence="cjm"} ! proctodeum @@ -62891,7 +63099,6 @@ xref: MA:0001979 xref: NCIT:C52938 xref: UMLS:C0226393 {source="ncithesaurus:Inferior_Rectal_Artery"} is_a: UBERON:0003835 ! abdominal segment blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035039 ! rectal artery relationship: connected_to UBERON:0007315 {subset="human_reference_atlas"} ! internal pudendal artery @@ -63570,7 +63777,6 @@ xref: NCIT:C97339 xref: NLX:143555 xref: UMLS:C0026607 {source="ncithesaurus:Primary_Motor_Cortex"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex relationship: contributes_to_morphology_of UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0000956 ! cerebral cortex @@ -63729,7 +63935,6 @@ relationship: has_muscle_antagonist UBERON:0001385 {source="dbpedia"} ! tibialis relationship: has_muscle_insertion UBERON:0003701 {source="dbpedia"} ! calcaneal tendon relationship: has_muscle_origin UBERON:0001446 {notes="fibula medial border of tibia", source="dbpedia"} ! fibula relationship: innervated_by UBERON:0001323 {notes="tibial nerve specifically nerve roots ", source="dbpedia"} ! tibial nerve -relationship: never_in_taxon NCBITaxon:9611 {source="http://en.wikipedia.org/wiki/Soleus"} ! Canis relationship: part_of UBERON:0001665 {source="FMA"} ! triceps surae [Term] @@ -63831,7 +64036,6 @@ xref: MESH:A08.186.211.730.885.213.863.297 xref: NCIT:C52712 xref: UMLS:C0004302 {source="ncithesaurus:Auditory_Cortex"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007605 {source="Wikipedia"} ! sensory perception of sound relationship: contributes_to_morphology_of UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0000956 ! cerebral cortex @@ -65546,6 +65750,7 @@ xref: MESH:D005145 xref: NCIT:C13071 xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA xref: UMLS:C0015450 {source="ncithesaurus:Face"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001444 ! subdivision of head relationship: contributes_to_morphology_of UBERON:0000033 ! head relationship: has_part UBERON:0000018 {gci_filler="NCBITaxon:50557", gci_relation="part_of"} ! compound eye @@ -65618,7 +65823,6 @@ xref: MA:0001233 xref: NCIT:C49481 xref: UMLS:C0222110 {source="ncithesaurus:Ear_Skin"} is_a: UBERON:0001084 ! skin of head -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001691 ! external ear relationship: part_of UBERON:0001691 ! external ear @@ -65858,6 +66062,7 @@ xref: NCIT:C25203 xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA xref: UMLS:C0037004 {source="ncithesaurus:Shoulder"} xref: VHOG:0000342 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000475 ! organism subdivision relationship: has_part UBERON:0016884 ! shoulder joint relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda @@ -66114,7 +66319,6 @@ xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA xref: UMLS:C0224234 {source="ncithesaurus:Deltoid"} xref: VHOG:0000846 is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034908 ! scapular muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: attaches_to UBERON:0000976 ! humerus @@ -66182,7 +66386,6 @@ xref: NCIT:C33750 xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA xref: UMLS:C0224232 {source="ncithesaurus:Teres_Major_Muscle"} xref: VHOG:0000750 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010467 ! teres muscle relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass relationship: has_muscle_insertion UBERON:0000976 {notes="medial lip of the intertubercular sulcus of the humerus", source="dbpedia"} ! humerus @@ -66340,6 +66543,7 @@ xref: NCIT:C32898 xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA xref: UMLS:C0022745 {source="ncithesaurus:Knee_Joint"} xref: VHOG:0001003 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 ! synovial limb joint intersection_of: UBERON:0000982 ! skeletal joint @@ -66494,6 +66698,7 @@ xref: MESH:D004551 xref: NCIT:C32497 xref: UMLS:C0013770 {source="ncithesaurus:Elbow_Joint"} xref: VHOG:0000997 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 {source="FMA"} ! synovial joint is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0011139 ! synovial limb joint @@ -66643,7 +66848,6 @@ xref: MESH:D010369 xref: NCIT:C33286 xref: UMLS:C0030747 {source="ncithesaurus:Pectoralis_Muscle"} is_a: UBERON:0003830 ! thoracic segment muscle -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008196 {source="FMA"} ! muscle of pectoral girdle relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass relationship: part_of UBERON:0004464 {source="BTO"} ! musculature of thorax @@ -66946,6 +67150,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/181300001 xref: MA:0000475 xref: VHOG:0001196 is_a: UBERON:0001515 ! thoracic aorta +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connected_to UBERON:0001496 {subset="human_reference_atlas"} ! ascending aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta @@ -67087,6 +67292,7 @@ xref: MA:0002571 xref: NCIT:C32455 xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA xref: UMLS:C0011666 {source="ncithesaurus:Descending_Aorta"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005800 {source="FMA"} ! section of aorta relationship: connected_to UBERON:0001508 {subset="human_reference_atlas"} ! arch of aorta relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta @@ -68062,10 +68268,9 @@ xref: ZFA:0000112 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube relationship: connects UBERON:0000165 ! mouth +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0007026 ! presumptive gut relationship: immediate_transformation_of UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut -relationship: never_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha -relationship: never_in_taxon NCBITaxon:41324 {source="https://doi.org/10.1371/journal.pone.0016309"} ! Siboglinidae relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0001007 ! digestive system @@ -68100,8 +68305,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/361381009 xref: MA:0000442 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ xref: VHOG:0000406 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0000004 ! nose [Term] @@ -68119,6 +68324,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/281488008 xref: MA:0000435 xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g xref: VHOG:0000382 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: has_part UBERON:0000170 ! pair of lungs @@ -68340,7 +68546,6 @@ xref: NCIT:C32934 xref: UMLS:C0023054 {source="ncithesaurus:Laryngeal_Muscle"} is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! respiratory system muscle -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: part_of UBERON:0001737 ! larynx relationship: contributes_to_morphology_of UBERON:0001015 ! musculature @@ -69043,7 +69248,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/244757006 xref: MA:0001229 is_a: CARO:0000003 is_a: UBERON:0001630 ! muscle organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: attaches_to UBERON:0001848 ! auricular cartilage relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001757 {source="MA"} ! pinna @@ -69225,7 +69429,6 @@ xref: MA:0001271 xref: TAO:0000511 xref: VHOG:0000549 xref: ZFA:0000511 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004277 ! eye muscle is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010959 ! craniocervical muscle @@ -69467,7 +69670,6 @@ xref: Thyroid:isthmus xref: UMLS:C0229583 {source="ncithesaurus:Thyroid_Gland_Isthmus"} xref: VHOG:0000739 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure disjoint_from: UBERON:0003052 ! midbrain-hindbrain boundary relationship: connects UBERON:0001118 ! lobe of thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -69517,7 +69719,6 @@ xref: Sublingual:artery xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001832 ! sublingual gland relationship: branching_part_of UBERON:0001610 {source="FMA"} ! lingual artery @@ -69639,7 +69840,26 @@ is_a: UBERON:0010314 ! structure with developmental contribution from neural cre intersection_of: UBERON:0001637 ! artery intersection_of: directly_develops_from UBERON:0003118 ! pharyngeal arch artery 1 relationship: connected_to UBERON:0001070 {subset="human_reference_atlas"} ! external carotid artery +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0000062 ! organ +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0001004 ! respiratory system +relationship: develops_from UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0001009 ! circulatory system +relationship: develops_from UBERON:0001041 ! foregut +relationship: develops_from UBERON:0001042 ! chordate pharynx +relationship: develops_from UBERON:0001555 ! digestive tract relationship: develops_from UBERON:0003118 ! pharyngeal arch artery 1 +relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 +relationship: develops_from UBERON:0004535 ! cardiovascular system +relationship: develops_from UBERON:0004572 ! arterial system +relationship: develops_from UBERON:0007303 ! pharyngeal vasculature +relationship: develops_from UBERON:0007811 ! craniocervical region +relationship: develops_from UBERON:0008814 ! pharyngeal arch system +relationship: develops_from UBERON:0008816 ! embryonic head +relationship: develops_from UBERON:0011362 ! cranial blood vasculature +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: directly_develops_from UBERON:0003118 ! pharyngeal arch artery 1 relationship: part_of RO:0002577 ! system @@ -69660,7 +69880,6 @@ xref: NCIT:C52973 xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0014693 ! inferior alveolar artery intersection_of: supplies UBERON:0008199 ! chin @@ -69684,7 +69903,6 @@ xref: MA:0001924 xref: NCIT:C52847 xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"} is_a: UBERON:0001637 ! artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001616 ! maxillary artery intersection_of: supplies UBERON:0001567 ! cheek @@ -69718,7 +69936,6 @@ xref: UMLS:C0029078 {source="ncithesaurus:Opthalmic_Artery"} xref: XAO:0000368 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -69799,7 +70016,6 @@ xref: NCIT:C52948 xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001817 ! lacrimal gland relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery @@ -69845,7 +70061,6 @@ xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0001636 {source="lexical"} ! posterior cerebral artery relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -69915,7 +70130,6 @@ xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -69947,7 +70161,6 @@ xref: ZFA:0005001 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006347 ! communicating artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0006347 ! communicating artery intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery @@ -69978,7 +70191,6 @@ xref: MA:0002463 xref: MESH:A08.800.550.700.120.600.150 xref: NCIT:C66852 xref: UMLS:C0007277 {source="ncithesaurus:Carotid_Body"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: capable_of GO:0009593 ! detection of chemical stimulus relationship: capable_of_part_of GO:0003039 ! detection of reduced oxygen by carotid body chemoreceptor signaling @@ -70340,7 +70552,6 @@ xref: MA:0001868 xref: ncithesaurus:Transverse_Sinus xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA xref: Transverse:sinuses -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0017635 ! paired venous dural sinus intersection_of: UBERON:0017635 ! paired venous dural sinus intersection_of: tributary_of UBERON:0005475 ! sigmoid sinus @@ -70363,7 +70574,6 @@ xref: MA:0001867 xref: NCIT:C12515 xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA xref: UMLS:C0226859 {source="ncithesaurus:Superior_Sagittal_Sinus"} -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015704 ! sagittal sinus relationship: develops_from UBERON:0009968 {source="cjm"} ! primitive superior sagittal sinus @@ -70923,7 +71133,6 @@ xref: NCIT:C32579 xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA xref: UMLS:C0226532 {source="ncithesaurus:Facial_Vein"} is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0001586 ! internal jugular vein @@ -70960,9 +71169,7 @@ xref: MA:0002223 xref: NCIT:C53128 xref: UMLS:C0226541 {source="ncithesaurus:Submental_Vein"} is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001653 ! facial vein relationship: part_of UBERON:0008199 ! chin relationship: tributary_of UBERON:0001653 {source="FMA/obol"} ! facial vein @@ -71006,7 +71213,6 @@ xref: NCIT:C52700 xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA xref: UMLS:C0226521 {source="ncithesaurus:Superficial_Temporal_Vein"} is_a: UBERON:0001671 ! temporal vein -is_a: UBERON:0003502 ! neck blood vessel relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA", source="Wikipedia"} ! retromandibular vein @@ -71019,7 +71225,6 @@ xref: FMA:50935 xref: http://www.snomedbrowser.com/Codes/Details/151400007 xref: MA:0002241 is_a: UBERON:0001671 ! temporal vein -is_a: UBERON:0003502 ! neck blood vessel relationship: drains UBERON:0004088 ! orbital region relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA", source="TFD"} ! retromandibular vein @@ -71034,7 +71239,6 @@ xref: FMA:50938 xref: http://www.snomedbrowser.com/Codes/Details/151501009 xref: MA:0002247 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein intersection_of: UBERON:0001638 ! vein intersection_of: anastomoses_with UBERON:0001653 ! facial vein @@ -71059,7 +71263,6 @@ xref: NCIT:C32855 xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA xref: UMLS:C0226524 {source="ncithesaurus:Internal_Maxillary_Vein"} is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001656 ! retromandibular vein relationship: tributary_of UBERON:0001656 {source="FMA"} ! retromandibular vein @@ -71121,7 +71324,6 @@ xref: UMLS:C0007797 {source="ncithesaurus:Cerebral_Vein"} xref: XAO:0004160 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0001893 ! telencephalon relationship: drains UBERON:0001893 ! telencephalon @@ -71324,7 +71526,6 @@ xref: NCIT:C53063 xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein -is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0006011 ! hyaloid vein relationship: develops_from_part_of UBERON:0006011 {notes="proximal portion", source="ISBN:0781772214"} ! hyaloid vein relationship: drains UBERON:0000966 ! retina @@ -71400,7 +71601,8 @@ xref: XAO:0000428 xref: ZFA:0000295 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve property_value: dc-contributor https://github.com/ANiknejad @@ -71501,7 +71703,6 @@ xref: Temporal:bone xref: UMLS:C0039484 {source="ncithesaurus:Temporal_Bone"} xref: VHOG:0000800 is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest [Term] id: UBERON:0001679 @@ -71639,7 +71840,6 @@ relationship: develops_from UBERON:0000924 ! ectoderm relationship: develops_from UBERON:0002342 ! neural crest relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton relationship: in_lateral_side_of UBERON:0012072 {source="ISBN:0073040584"} ! palatal part of dermatocranium -relationship: never_in_taxon NCBITaxon:32519 {source="TAO"} ! Ostariophysi relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0011085 ! palatoquadrate arch relationship: part_of UBERON:0011156 ! facial skeleton @@ -71825,7 +72025,7 @@ xref: UMLS:C0038152 {source="ncithesaurus:Stapes"} xref: VHOG:0000688 is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015016 ! stapes endochondral element intersection_of: UBERON:0015016 ! stapes endochondral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -71886,6 +72086,7 @@ xref: UMLS:C0024631 {source="ncithesaurus:Malleus"} xref: VHOG:0000690 is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015018 ! malleus endochondral element intersection_of: UBERON:0015018 ! malleus endochondral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -71982,7 +72183,6 @@ disjoint_from: UBERON:0006618 ! atrium auricular region relationship: contributes_to_morphology_of UBERON:0000033 ! head relationship: contributes_to_morphology_of UBERON:0001690 ! ear relationship: in_lateral_side_of UBERON:0000033 ! head -relationship: never_in_taxon NCBITaxon:9709 {source="Wikipedia"} ! Phocidae relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: part_of UBERON:0001690 ! ear @@ -72009,7 +72209,6 @@ xref: TAO:0000472 xref: VHOG:0001152 xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0015048 ! basioccipital endochondral element intersection_of: UBERON:0015048 ! basioccipital endochondral element @@ -72044,7 +72243,6 @@ xref: TAO:0000661 xref: VHOG:0001151 xref: ZFA:0000661 is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0015051 ! exoccipital endochondral element intersection_of: UBERON:0015051 ! exoccipital endochondral element @@ -72145,7 +72343,6 @@ xref: TAO:0001410 xref: UMLS:C0029180 {source="ncithesaurus:Orbit"} xref: XAO:0003171 xref: ZFA:0001410 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton @@ -72201,6 +72398,7 @@ xref: Intermediate:nerve xref: MBA:1131 xref: TAO:0000679 xref: ZFA:0000679 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004674 ! facial nerve root relationship: develops_from UBERON:0003099 {source="Wikipedia"} ! cranial neural crest relationship: part_of UBERON:0001896 ! medulla oblongata @@ -72410,8 +72608,8 @@ xref: NCIT:C33160 xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"} xref: VHOG:0000017 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003037 ! septum -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0000004 ! nose relationship: develops_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process relationship: part_of UBERON:0000004 ! nose @@ -72531,7 +72729,6 @@ xref: Upper:jaw xref: VHOG:0000454 is_a: CARO:0000003 is_a: UBERON:0000475 ! organism subdivision -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000475 ! organism subdivision intersection_of: has_skeleton UBERON:0003277 ! skeleton of upper jaw disjoint_from: UBERON:0001710 ! lower jaw region @@ -72598,7 +72795,6 @@ xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"} xref: VHOG:0000016 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: capable_of GO:0060082 ! eye blink reflex relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye relationship: fma_set_term FMA:75178 @@ -72771,8 +72967,8 @@ xref: NCIT:C34292 xref: Secondary:palate xref: UMLS:C0700374 {source="ncithesaurus:Palate"} xref: UMLS:C1519217 {source="ncithesaurus:Secondary_Palate"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007375 ! roof of mouth -is_a: UBERON:0010313 ! neural crest-derived structure relationship: adjacent_to UBERON:0000167 ! oral cavity relationship: adjacent_to UBERON:0001707 ! nasal cavity relationship: develops_from UBERON:0005619 {notes="fusion", source="http://www.indiana.edu/~anat550/hnanim/face/face.html"} ! secondary palatal shelf @@ -72897,8 +73093,11 @@ xref: Nucleus:ambiguus xref: UMLS:C0152400 {source="BIRNLEX:2650"} xref: UMLS:C0152400 {source="ncithesaurus:Nucleus_Ambiguus"} xref: UMLS:C1281211 {source="BIRNLEX:2650"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010126 ! future nucleus ambiguus relationship: immediate_transformation_of UBERON:0010126 {evidence="definitional"} ! future nucleus ambiguus relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata @@ -73037,8 +73236,16 @@ is_a: UBERON:0010314 ! structure with developmental contribution from neural cre is_a: UBERON:0013765 ! digestive system element relationship: adjacent_to UBERON:0000166 ! oral opening relationship: contributes_to_morphology_of UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0000165 ! mouth +relationship: develops_from UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0001555 ! digestive tract +relationship: develops_from UBERON:0007811 ! craniocervical region relationship: develops_from UBERON:0008814 ! pharyngeal arch system relationship: develops_from UBERON:0010056 ! future tongue +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: has_developmental_contribution_from UBERON:0006260 {notes="anterior 2/3"} ! lingual swellings relationship: has_developmental_contribution_from UBERON:0006756 {source="Wikipedia"} ! median lingual swelling relationship: has_developmental_contribution_from UBERON:0006757 {source="Wikipedia"} ! lateral lingual swelling @@ -73064,7 +73271,6 @@ xref: NCIT:C12278 xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA xref: Sphenoidal:sinus xref: UMLS:C0037885 {source="ncithesaurus:Sphenoid_Sinus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001825 ! paranasal sinus intersection_of: UBERON:0001825 ! paranasal sinus intersection_of: part_of UBERON:0009639 ! body of sphenoid @@ -73102,7 +73308,6 @@ xref: NCIT:C33258 xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"} xref: UMLS:C0226964 {source="BIRNLEX:4102"} xref: UMLS:C1289183 {source="BIRNLEX:4102"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue @@ -73216,7 +73421,7 @@ xref: UMLS:C0521367 {source="ncithesaurus:Oropharynx"} xref: VHOG:0000457 xref: VSAO:0000034 xref: XAO:0004048 -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx relationship: develops_from UBERON:0010023 {source="ISBN:0073040584-table13.1"} ! dorsal part of pharyngeal pouch 2 @@ -73309,9 +73514,7 @@ xref: MIAA:0000039 xref: NCIT:C12231 xref: Soft:palate xref: UMLS:C0030219 {source="ncithesaurus:Soft_Palate"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster -relationship: never_in_taxon NCBITaxon:8782 {source="GOC:fmc"} ! Aves relationship: part_of UBERON:0000165 {source="FMA"} ! mouth relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate @@ -73339,7 +73542,6 @@ xref: NCIT:C12232 xref: Palatine:uvula xref: UMLS:C0042173 {source="ncithesaurus:Uvula"} is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:0004078 ! cerebellum vermis lobule IX relationship: capable_of_part_of GO:0071625 ! vocalization behavior relationship: only_in_taxon NCBITaxon:9443 {source="http://www.ncbi.nlm.nih.gov/pubmed/1408233"} ! Primates @@ -73436,6 +73638,7 @@ xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA xref: UMLS:C0023078 {source="ncithesaurus:Larynx"} xref: VHOG:0001279 xref: XAO:0003081 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system @@ -73493,7 +73696,6 @@ xref: NCIT:C12281 xref: UMLS:C0023050 {source="ncithesaurus:Laryngeal_Cartilage"} xref: VHOG:0001550 is_a: UBERON:0003406 ! cartilage of respiratory system -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007844 {source="FMA"} ! cartilage element is_a: UBERON:0011004 ! pharyngeal arch cartilage intersection_of: UBERON:0007844 ! cartilage element @@ -73587,7 +73789,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279508004 xref: MA:0001755 xref: NCIT:C32933 xref: UMLS:C0458519 {source="ncithesaurus:Laryngeal_Ligament"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001737 ! larynx @@ -73653,7 +73854,6 @@ xref: MA:0002675 xref: NCIT:C33781 xref: UMLS:C0229575 {source="ncithesaurus:Thyroid_Gland_Capsule"} is_a: UBERON:0003893 ! capsule -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -73675,8 +73875,8 @@ xref: EMAPA:37769 {source="MA:th"} xref: FMA:55515 xref: http://www.snomedbrowser.com/Codes/Details/371402001 xref: MA:0000730 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000353 ! parenchyma -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: has_part CL:0000570 {source="FMA"} ! parafollicular cell @@ -73740,8 +73940,8 @@ xref: MA:0000274 xref: MESH:D007765 xref: NCIT:C32905 xref: UMLS:C0022903 {source="ncithesaurus:Lacrimal_Apparatus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda @@ -73813,8 +74013,6 @@ is_a: UBERON:4000013 ! mineralized skeletal tissue relationship: composed_primarily_of CHEBI:52255 {proportion="85", source="http://en.wikipedia.org/wiki/ENAM"} ! hydroxylapatite relationship: develops_from UBERON:0011588 {source="VSAO"} ! pre-enamel relationship: has_quality PATO:0002444 ! mineralized -relationship: never_in_taxon NCBITaxon:9359 {source="http://www.ncbi.nlm.nih.gov/pubmed/19730686"} ! Dasypodidae -relationship: never_in_taxon NCBITaxon:9816 {source="http://www.ncbi.nlm.nih.gov/pubmed/19730686"} ! Orycteropodidae relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata [Term] @@ -73884,9 +74082,7 @@ synonym: "stylohyal" BROAD [FMA:56472] synonym: "stylohyal bone" RELATED [MFMO:0000053] xref: FMA:56472 xref: MFMO:0000053 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003960 ! styloid process of temporal bone [Term] @@ -73952,8 +74148,8 @@ xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA xref: Pinna:(anatomy) xref: UMLS:C0928075 {source="ncithesaurus:Auricle"} xref: VHOG:0000460 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001444 ! subdivision of head -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: continuous_with UBERON:0001352 ! external acoustic meatus relationship: develops_from UBERON:0006208 ! auditory hillocks relationship: has_quality PATO:0001297 ! reflectivity @@ -74108,7 +74304,6 @@ xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA xref: UMLS:C1266928 {source="ncithesaurus:Nasal_Turbinate"} is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0035612 ! nasal turbinal intersection_of: UBERON:0035612 ! nasal turbinal @@ -74116,7 +74311,6 @@ intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue disjoint_from: UBERON:0006203 ! conchal part of pinna relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0035007 ! nasal concha cartilage -relationship: never_in_taxon NCBITaxon:436486 {notes="disputed", source="http://palaeos.com/vertebrates/bones/braincase/ethmoid.html"} ! Dinosauria relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: transformation_of UBERON:0035007 ! nasal concha cartilage @@ -74177,10 +74371,8 @@ xref: MESH:D008443 xref: NCIT:C12275 xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA xref: UMLS:C0024957 {source="ncithesaurus:Maxillary_Sinus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001825 ! paranasal sinus relationship: in_lateral_side_of UBERON:0000033 ! head -relationship: never_in_taxon NCBITaxon:33554 ! Carnivora relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -74361,7 +74553,6 @@ xref: MA:0001294 xref: NCIT:C32907 xref: UMLS:C0459631 {source="ncithesaurus:Lacrimal_Canaliculus"} is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connects UBERON:0001351 ! lacrimal sac relationship: connects UBERON:0010284 ! lacrimal punctum relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system @@ -74389,7 +74580,6 @@ xref: UMLS:C0034121 {source="ncithesaurus:Pupil"} xref: VHOG:0000116 xref: XAO:0000283 xref: ZFA:0001283 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="AAO", source="FMA"} ! anatomical space relationship: contributes_to_morphology_of UBERON:0001769 ! iris relationship: part_of UBERON:0001769 ! iris @@ -74435,7 +74625,6 @@ xref: UMLS:C0459875 {source="ncithesaurus:Corneal_Epithelium"} xref: ZFA:0001683 is_a: UBERON:0000488 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! atypical epithelium is_a: UBERON:0010304 {gci_relation="part_of", gci_filler="NCBITaxon:7955"} ! non-keratinized stratified squamous epithelium -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: bounding_layer_of UBERON:0000964 ! cornea @@ -74661,7 +74850,6 @@ xref: Iris:stroma xref: MA:0002777 xref: ZFA:0005569 is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0001769 ! iris relationship: contributes_to_morphology_of UBERON:0001769 ! iris @@ -74781,7 +74969,10 @@ intersection_of: UBERON:0001781 ! layer of retina intersection_of: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium relationship: adjacent_to UBERON:0001787 {source="Wikipedia"} ! photoreceptor layer of retina relationship: adjacent_to UBERON:0003902 ! retinal neural layer +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0003072 ! optic cup relationship: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium +relationship: develops_from UBERON:0010312 ! immature eye relationship: has_part GO:0048770 ! pigment granule relationship: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium @@ -74814,7 +75005,6 @@ xref: Optic:disc xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"} xref: VHOG:0000551 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: extends_fibers_into UBERON:0000941 ! cranial nerve II relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000966 ! retina @@ -74864,6 +75054,7 @@ xref: VHOG:0000279 xref: XAO:0000429 xref: XAO:0003089 xref: ZFA:0000641 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0034713 ! cranial neuron projection bundle intersection_of: UBERON:0001021 ! nerve @@ -74902,8 +75093,8 @@ xref: UMLS:C0016622 {source="BIRNLEX:2543"} xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"} xref: UMLS:C0450290 {source="BIRNLEX:2543"} xref: VHOG:0001572 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CHEBI:27547 ! zeaxanthin relationship: has_part CHEBI:28838 ! lutein relationship: has_part CL:0000573 ! retinal cone cell @@ -75117,6 +75308,7 @@ xref: TAO:0000024 xref: VHOG:0001166 xref: XAO:0003223 xref: ZFA:0000024 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001781 {source="FMA"} ! layer of retina relationship: adjacent_to UBERON:0001793 ! nerve fiber layer of retina relationship: composed_primarily_of CL:0000740 ! retinal ganglion cell @@ -75184,6 +75376,7 @@ xref: TAO:0001029 xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"} xref: XAO:0003222 xref: ZFA:0001029 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina relationship: adjacent_to UBERON:0001797 ! vitreous humor relationship: contributes_to_morphology_of UBERON:0000966 ! retina @@ -75480,7 +75673,6 @@ xref: VHOG:0000550 xref: ZFA:0005574 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: bounding_layer_of UBERON:0000965 ! lens of camera-type eye relationship: bounding_layer_of UBERON:0000965 ! lens of camera-type eye @@ -75545,7 +75737,6 @@ xref: NCIT:C12467 xref: Sympathetic:ganglion xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} is_a: UBERON:0001805 ! autonomic ganglion -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000013 ! sympathetic nervous system relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system @@ -75590,8 +75781,8 @@ name: parasympathetic ganglion def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303] subset: pheno_slim subset: uberon_slim -synonym: "ganglion parasympathicum" RELATED [BTO:0001256] synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion] +synonym: "ganglion parasympathicum" RELATED [BTO:0001256] xref: BTO:0001256 xref: EHDAA2:0001400 xref: EMAPA:32813 @@ -75648,7 +75839,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/122455009 xref: MA:0002407 xref: NCIT:C12929 xref: UMLS:C0501403 {source="ncithesaurus:Nerve_Plexus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: has_part CL:0000526 {source="AEO"} ! afferent neuron relationship: has_part CL:0000527 {source="AEO"} ! efferent neuron @@ -75681,8 +75871,8 @@ xref: MESH:A09.371.192 xref: NCIT:C12341 xref: UMLS:C0009758 {source="ncithesaurus:Conjunctiva"} xref: XAO:0000182 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 {source="FMA"} ! anatomical wall -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001711 ! eyelid relationship: adjacent_to UBERON:0001773 ! sclera relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball @@ -75740,8 +75930,8 @@ name: brachial nerve plexus def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm] subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] -synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus] +synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] xref: Brachial:plexus xref: EHDAA2:0000180 xref: EHDAA:3782 @@ -75758,8 +75948,6 @@ xref: UMLS:C0006090 {source="ncithesaurus:Brachial_Plexus"} xref: VHOG:0000372 is_a: CARO:0001001 is_a: UBERON:0001813 ! spinal nerve plexus -intersection_of: UBERON:0001813 ! spinal nerve plexus -intersection_of: innervates UBERON:0002102 ! forelimb relationship: innervates UBERON:0002102 ! forelimb [Term] @@ -75787,8 +75975,6 @@ xref: UMLS:C0024093 {source="ncithesaurus:Lumbosacral_Plexus"} xref: VHOG:0000926 is_a: CARO:0001001 is_a: UBERON:0001813 ! spinal nerve plexus -intersection_of: UBERON:0001813 ! spinal nerve plexus -intersection_of: innervates UBERON:0002103 ! hindlimb relationship: innervates UBERON:0002103 ! hindlimb [Term] @@ -75840,14 +76026,12 @@ xref: VHOG:0001476 is_a: UBERON:0002365 ! exocrine gland is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015154 ! lateral gland of orbital region intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001750 ! lacrimal apparatus disjoint_from: UBERON:0004187 ! Harderian gland relationship: contributes_to_morphology_of UBERON:0001750 ! lacrimal apparatus relationship: develops_from UBERON:0022284 ! lacrimal gland bud -relationship: never_in_taxon NCBITaxon:8570 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Serpentes relationship: part_of UBERON:0001750 ! lacrimal apparatus relationship: part_of UBERON:0002330 ! exocrine system @@ -75873,7 +76057,6 @@ xref: Meibomian:gland xref: MESH:D008537 xref: NCIT:C33075 xref: UMLS:C0025181 {source="ncithesaurus:Meibomian_Gland"} -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013231 ! sebaceous gland of eyelid is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland intersection_of: UBERON:0001821 ! sebaceous gland @@ -75893,7 +76076,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/280576003 xref: MA:0001266 xref: Palpebral:fissure is_a: UBERON:0000161 {source="FMA"} ! orifice -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001712 ! upper eyelid relationship: adjacent_to UBERON:0001713 ! lower eyelid relationship: part_of UBERON:0000019 ! camera-type eye @@ -75924,6 +76106,7 @@ xref: Sweat:gland xref: UMLS:C0038989 {source="ncithesaurus:Sweat_Gland"} xref: VHOG:0001467 is_a: UBERON:0002365 {source="MA"} ! exocrine gland +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0019319 ! exocrine gland of integumental system intersection_of: UBERON:0002530 ! gland @@ -75958,6 +76141,7 @@ xref: NCIT:C33519 xref: Sebaceous:gland xref: UMLS:C0036505 {source="ncithesaurus:Sebaceous_Gland"} xref: VHOG:0001468 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0012344 {source="Wikipedia"} ! holocrine gland is_a: UBERON:0019319 ! exocrine gland of integumental system @@ -75982,7 +76166,6 @@ xref: MA:0001259 xref: Orbital:septum is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0003037 ! septum -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: part_of UBERON:0004772 ! eyelid tarsus relationship: surrounds UBERON:0001697 ! orbit of skull @@ -76005,7 +76188,6 @@ xref: NCIT:C49593 xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} is_a: UBERON:0002418 {source="MA"} ! cartilage tissue is_a: UBERON:0003566 ! head connective tissue -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0000004 ! nose @@ -76036,7 +76218,6 @@ xref: MESH:D007820 xref: NCIT:C49246 xref: UMLS:C0023053 {source="ncithesaurus:Laryngeal_Mucosa"} is_a: UBERON:0000379 ! tracheal mucosa -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -76087,8 +76268,6 @@ xref: GAID:302 xref: http://en.wikipedia.org/wiki/Mucous_membrane_of_nose xref: http://www.snomedbrowser.com/Codes/Details/310211009 is_a: UBERON:0000379 ! tracheal mucosa -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0015788 ! olfactory apparatus chamber relationship: bounding_layer_of UBERON:0015788 ! olfactory apparatus chamber @@ -76226,9 +76405,9 @@ xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA xref: Parotid:gland xref: UMLS:C0030580 {source="ncithesaurus:Parotid_Gland"} xref: VHOG:0000308 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000409 ! serous gland is_a: UBERON:0001829 ! major salivary gland -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0012102 ! buccal salivary gland disjoint_from: UBERON:0013219 ! parotoid gland relationship: develops_from UBERON:0008801 ! parotid gland primordium @@ -76262,6 +76441,7 @@ xref: NCIT:C12234 xref: Sublingual:gland xref: UMLS:C0038553 {source="ncithesaurus:Sublingual_Salivary_Gland"} xref: VHOG:0000363 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001829 {source="FMA"} ! major salivary gland disjoint_from: UBERON:0009964 ! crustacean maxillary gland relationship: develops_from UBERON:0006297 ! sublingual gland primordium @@ -76296,7 +76476,6 @@ xref: ZFA:0007006 is_a: UBERON:0003102 {source="ZFA"} ! surface structure disjoint_from: UBERON:0004084 ! genital labium relationship: contributes_to_morphology_of UBERON:0000165 ! mouth -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000165 {source="BTO", source="FMA-implicit", source="VHOG", source="ZFA"} ! mouth relationship: surrounds UBERON:0000166 {source="cjm"} ! oral opening @@ -76323,7 +76502,20 @@ is_a: UBERON:0001833 ! lip is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001833 ! lip intersection_of: part_of UBERON:0001709 ! upper jaw region +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000062 ! organ +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0000165 ! mouth +relationship: develops_from UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0001456 ! face +relationship: develops_from UBERON:0001555 ! digestive tract +relationship: develops_from UBERON:0001709 ! upper jaw region +relationship: develops_from UBERON:0004089 ! midface +relationship: develops_from UBERON:0007811 ! craniocervical region relationship: develops_from UBERON:0011592 ! future upper lip +relationship: develops_from UBERON:0011595 ! jaw region +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: immediate_transformation_of UBERON:0011592 ! future upper lip relationship: part_of UBERON:0001709 ! upper jaw region @@ -76401,7 +76593,6 @@ xref: MA:0001586 xref: MESH:D018987 xref: NCIT:C32486 xref: Salivary:duct -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube is_a: UBERON:0003928 ! digestive system duct intersection_of: UBERON:0000058 ! duct @@ -76455,8 +76646,6 @@ xref: NCIT:C33227 xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"} xref: VHOG:0001219 xref: XAO:0000193 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001694 {source="FMA", source="MA"} ! petrous part of temporal bone relationship: part_of UBERON:0001846 {source="FMA"} ! internal ear @@ -76492,9 +76681,8 @@ xref: UMLS:C0036622 {source="ncithesaurus:Semicircular_Canal"} xref: VHOG:0001144 xref: XAO:0000198 xref: ZFA:0000431 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 {source="GO"} ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001846 {source="MA"} ! internal ear relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth @@ -76614,8 +76802,6 @@ xref: UMLS:C1278895 {source="BIRNLEX:1190"} xref: VHOG:0000691 xref: XAO:0000197 xref: ZFA:0000374 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034921 ! multi organ part structure relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: has_quality PATO:0000404 {gci_relation="part_of", gci_filler="NCBITaxon:32525", source="Wikipedia"} ! coiled @@ -76689,8 +76875,7 @@ xref: UMLS:C1268973 {source="BIRNLEX:1196"} xref: VHOG:0000284 xref: XAO:0000192 xref: ZFA:0000217 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: develops_from UBERON:0003051 {evidence="definitional"} ! ear vesicle relationship: part_of UBERON:0001690 ! ear @@ -76717,7 +76902,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362544006 xref: MA:0002468 xref: NCIT:C32999 xref: UMLS:C0229315 {source="ncithesaurus:Lobule_of_the_Auricle"} -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034929 ! external soft tissue zone relationship: contributes_to_morphology_of UBERON:0001691 ! external ear relationship: has_part UBERON:0001013 ! adipose tissue @@ -76735,7 +76919,6 @@ xref: EMAPA:35158 xref: FMA:61013 xref: http://www.snomedbrowser.com/Codes/Details/279627003 xref: MA:0001227 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: part_of UBERON:0001757 ! pinna @@ -76766,9 +76949,8 @@ xref: NCIT:C33090 xref: UMLS:C0458700 {source="ncithesaurus:Membranous_Labyrinth"} xref: VHOG:0000729 xref: XAO:0000194 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0003051 ! ear vesicle relationship: located_in UBERON:0004637 ! otic capsule relationship: part_of UBERON:0001846 {source="FMA", source="MA"} ! internal ear @@ -76787,11 +76969,9 @@ xref: http://www.snomedbrowser.com/Codes/Details/280426002 xref: MA:0001295 is_a: UBERON:0000062 {source="FMA"} ! organ is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: channel_for UBERON:0001827 ! secretion of lacrimal gland relationship: connects UBERON:0001707 ! nasal cavity relationship: connects UBERON:0010284 ! lacrimal punctum -relationship: never_in_taxon NCBITaxon:8459 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Testudines relationship: only_in_taxon NCBITaxon:32523 {source="ISBN:9780674021839"} ! Tetrapoda relationship: part_of UBERON:0001750 {source="FMA"} ! lacrimal apparatus @@ -76943,8 +77123,6 @@ xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"} xref: UMLS:C1323110 {source="BIRNLEX:2562"} xref: VHOG:0000507 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002499 {source="FMA", source="MA"} ! cochlear labyrinth [Term] @@ -76962,8 +77140,6 @@ xref: NCIT:C33528 xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} xref: VHOG:0000238 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth @@ -77034,8 +77210,6 @@ xref: MESH:D004711 xref: TAO:0002194 xref: ZFA:0001705 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] @@ -77053,8 +77227,6 @@ xref: http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen xref: http://www.snomedbrowser.com/Codes/Details/279805009 xref: MA:0000244 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0001854 {source="Wikipedia"} ! saccule of membranous labyrinth relationship: connects UBERON:0001855 {source="Wikipedia"} ! cochlear duct of membranous labyrinth relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth @@ -77083,8 +77255,6 @@ xref: NCIT:C33871 xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} xref: XAO:0004145 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] @@ -77133,9 +77303,8 @@ synonym: "meatus acusticus externus cartilagineus" EXACT LATIN [FMA:61289, FMA:T xref: EMAPA:37525 {source="MA:th"} xref: FMA:61289 xref: MA:0001234 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0001352 ! external acoustic meatus @@ -77244,8 +77413,6 @@ xref: UMLS:C0228174 {source="ncithesaurus:Cerebral_Hemisphere"} xref: UMLS:C0242202 {source="BIRNLEX:1042"} xref: VHOG:0001639 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0000955 ! brain relationship: in_lateral_side_of UBERON:0001893 {source="FMA-abduced-lr"} ! telencephalon @@ -77472,6 +77639,7 @@ xref: NCIT:C12449 xref: PBA:10097 xref: UMLS:C0017651 {source="ncithesaurus:Globus_Pallidus"} xref: UMLS:C0017651 {source="BIRNLEX:1234"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009663 ! telencephalic nucleus relationship: contributes_to_morphology_of UBERON:0010011 ! collection of basal ganglia relationship: develops_from UBERON:0001894 ! diencephalon @@ -77864,7 +78032,6 @@ xref: NCIT:C32452 xref: UMLS:C0152314 {source="ncithesaurus:Dentate_Gyrus"} is_a: UBERON:0000200 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! gyrus is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation [Term] @@ -78039,8 +78206,11 @@ xref: VHOG:0000383 xref: XAO:0000011 xref: ZFA:0000109 is_a: UBERON:0002616 ! regional part of brain +disjoint_from: UBERON:0002298 ! brainstem relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0003080 ! anterior neural tube +relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0006240 ! future forebrain relationship: immediate_transformation_of UBERON:0006240 {evidence="definitional"} ! future forebrain relationship: part_of UBERON:0000955 ! brain @@ -78092,6 +78262,8 @@ xref: ZFA:0000128 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: develops_from UBERON:0002346 ! neurectoderm +relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0009616 ! presumptive midbrain relationship: has_developmental_contribution_from UBERON:0003849 {evidence="definitional"} ! mesencephalic neural crest relationship: immediate_transformation_of UBERON:0009616 {source="Bgee:AN"} ! presumptive midbrain @@ -78175,6 +78347,9 @@ xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0002346 ! neurectoderm +relationship: develops_from UBERON:0006238 ! future brain +relationship: develops_from UBERON:0006240 ! future forebrain relationship: develops_from UBERON:0014371 ! future telencephalon relationship: immediate_transformation_of UBERON:0014371 {source="Bgee:AN"} ! future telencephalon relationship: part_of UBERON:0001890 ! forebrain @@ -78238,7 +78413,10 @@ xref: ZFA:0000101 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001890 ! forebrain +relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0006222 ! future diencephalon +relationship: develops_from UBERON:0006238 ! future brain +relationship: develops_from UBERON:0006240 ! future forebrain relationship: has_developmental_contribution_from UBERON:0003851 {evidence="definitional"} ! diencephalon neural crest relationship: immediate_transformation_of UBERON:0006222 {evidence="definitional"} ! future diencephalon relationship: part_of UBERON:0001890 ! forebrain @@ -78275,9 +78453,16 @@ xref: NCIT:C32741 xref: UMLS:C0376353 {source="BIRNLEX:965"} xref: UMLS:C1516904 {source="ncithesaurus:Epencephalon"} xref: VHOG:0000741 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004733 ! segmental subdivision of hindbrain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0002028 ! hindbrain property_value: dc-contributor https://github.com/cmungall +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0000955 ! brain +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system +relationship: develops_from UBERON:0002028 ! hindbrain relationship: develops_from UBERON:0010092 ! future metencephalon relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio relationship: immediate_transformation_of UBERON:0010092 {evidence="definitional"} ! future metencephalon @@ -78334,8 +78519,6 @@ xref: VHOG:0000181 xref: XAO:0003100 xref: ZFA:0000545 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of GO:0002027 ! regulation of heart rate relationship: capable_of GO:0043576 ! regulation of respiratory gaseous exchange relationship: capable_of GO:0044058 ! regulation of digestive system process @@ -78576,6 +78759,7 @@ xref: MA:0001862 xref: NCIT:C33797 xref: UMLS:C1179002 {source="ncithesaurus:Tracheal_Epithelium"} xref: VHOG:0001045 +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003126 ! trachea @@ -79014,7 +79198,6 @@ synonym: "mammary gland lobule" EXACT [MA:0000793] xref: EMAPA:36634 xref: FMA:62090 xref: MA:0000793 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009911 {source="FMA"} ! lobule relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -79731,7 +79914,6 @@ xref: MA:0000841 xref: MBA:173 xref: UMLS:C0262326 {source="BIRNLEX:1569"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA", source="NIFSTD"} ! intermediate hypothalamic region @@ -80278,7 +80460,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/244437008 xref: NCIT:C33969 xref: UMLS:C1268166 {source="ncithesaurus:Spinal_Cord_Part"} is_a: UBERON:0000073 ! regional part of nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002240 ! spinal cord @@ -80342,7 +80523,6 @@ xref: MESH:A08.186.211.730.885.213.420 xref: PBA:294021746 xref: UMLS:C0175173 {source="BIRNLEX:2547"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0000956 ! cerebral cortex @@ -80428,8 +80608,6 @@ xref: MA:0000923 xref: MBA:1084 xref: UMLS:C0175194 {source="BIRNLEX:1108"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus @@ -80484,7 +80662,6 @@ xref: UMLS:C0019564 {source="ncithesaurus:Hippocampus"} xref: UMLS:C0019564 {source="BIRNLEX:721"} xref: VHOG:0001177 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory relationship: only_in_taxon NCBITaxon:40674 {source="http://en.wikipedia.org/wiki/Hippocampus"} ! Mammalia relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system @@ -80561,7 +80738,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/85546005 xref: MA:0001837 xref: NCIT:C49214 xref: UMLS:C0225601 {source="ncithesaurus:Bronchus_Submucosa"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002185 ! bronchus @@ -80610,6 +80786,7 @@ xref: MA:0000762 xref: NCIT:C12993 xref: UMLS:C0229686 {source="ncithesaurus:Splenic_White_Pulp"} xref: White:pulp +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1000023 ! spleen pulp relationship: composed_primarily_of CL:0000542 ! lymphocyte relationship: contributes_to_morphology_of UBERON:0002106 ! spleen @@ -80692,7 +80869,6 @@ xref: MA:0000135 xref: NCIT:C32234 xref: UMLS:C1179418 {source="ncithesaurus:Bronchus-Associated_Lymphoid_Tissue"} is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -80756,7 +80932,6 @@ xref: NCIT:C97341 xref: UMLS:C0175412 {source="BIRNLEX:990"} xref: UMLS:C0175412 {source="ncithesaurus:Pars_Compacta"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000700 ! dopaminergic neuron relationship: part_of UBERON:0002038 ! substantia nigra @@ -80800,7 +80975,6 @@ xref: MBA:381 xref: Pars:reticulata xref: UMLS:C0175413 {source="BIRNLEX:968"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002038 ! substantia nigra [Term] @@ -80874,7 +81048,6 @@ xref: MIAA:0000052 xref: NCIT:C13356 xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw xref: UMLS:C0032105 {source="ncithesaurus:Plasma"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000179 ! haemolymphatic fluid intersection_of: UBERON:0000463 ! organism substance intersection_of: has_part GO:0005577 ! fibrinogen complex @@ -80996,7 +81169,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1707949 xref: MA:0001568 xref: NCIT:C49223 xref: UMLS:C1707949 {source="ncithesaurus:Esophageal_Lamina_Propria"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001043 ! esophagus @@ -81088,7 +81260,6 @@ xref: MA:0002502 xref: NCIT:C13325 xref: Serum:(blood) xref: UMLS:C0229671 {source="ncithesaurus:Serum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000179 ! haemolymphatic fluid relationship: has_quality PATO:0001548 ! quality of a liquid relationship: part_of UBERON:0001969 ! blood plasma @@ -81396,8 +81567,8 @@ xref: NCIT:C13272 xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA xref: UMLS:C0032043 {source="ncithesaurus:Placenta"} xref: VHOG:0001266 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: develops_from UBERON:0000995 {source="ISBN:0073040584"} ! uterus relationship: develops_from UBERON:0003124 {source="Wikipedia"} ! chorion membrane @@ -81559,7 +81730,7 @@ xref: NCIT:C94819 xref: Papillary:dermis xref: UMLS:C0221930 {source="ncithesaurus:Stratum_Papillare"} xref: UMLS:C0682598 {source="ncithesaurus:Papillary_Dermis"} -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013754 ! integumentary system layer relationship: composed_primarily_of UBERON:0006815 {source="WP"} ! areolar connective tissue relationship: composed_primarily_of UBERON:0011822 {source="FMA-text"} ! dense irregular connective tissue @@ -81588,7 +81759,6 @@ xref: NCIT:C94818 xref: Reticular:dermis xref: UMLS:C0682599 {source="ncithesaurus:Reticular_Dermis"} xref: UMLS:C1514988 {source="ncithesaurus:Stratum_Reticulare"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin relationship: deep_to UBERON:0001992 ! papillary layer of dermis @@ -81709,15 +81879,23 @@ xref: VHOG:0000985 xref: ZFA:0000554 is_a: UBERON:0005384 ! nasal cavity epithelium is_a: UBERON:0006934 ! sensory epithelium +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0010499 {source="FMA"} ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0006934 ! sensory epithelium intersection_of: part_of UBERON:0005386 ! olfactory segment of nasal mucosa relationship: capable_of_part_of GO:0050911 ! detection of chemical stimulus involved in sensory perception of smell relationship: contributes_to_morphology_of UBERON:0000004 ! nose relationship: contributes_to_morphology_of UBERON:0005725 ! olfactory system +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000076 ! external ectoderm +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0003050 ! olfactory placode +relationship: develops_from UBERON:0007811 ! craniocervical region +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: develops_from UBERON:2001431 ! primitive olfactory epithelium relationship: has_part CL:0000207 {source="NBK26868"} ! olfactory receptor cell -relationship: has_part CL:0000853 {source="NBK26868"} ! olfactory epithelial support cell +relationship: has_part CL:0000853 {source="NBK26868"} ! olfactory epithelial supporting cell relationship: has_part CL:0002169 {source="NBK26868"} ! basal cell of olfactory epithelium relationship: immediate_transformation_of UBERON:2001431 ! primitive olfactory epithelium relationship: part_of UBERON:0000012 {source="NIFSTD"} ! somatic nervous system @@ -81816,7 +81994,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/263314001 xref: MA:0001508 xref: NCIT:C49575 xref: UMLS:C1261194 {source="ncithesaurus:Joint_of_the_Rib"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0002228 ! rib @@ -81899,7 +82076,7 @@ xref: MIAA:0000102 xref: TAO:0001155 xref: UMLS:C0206111 {source="BIRNLEX:1166"} xref: ZFA:0001155 -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system relationship: develops_from UBERON:0005428 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="Wikipedia", source="ZFA"} ! vagal neural crest @@ -81920,7 +82097,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0933402 xref: MA:0000740 xref: NCIT:C33029 xref: UMLS:C0933402 {source="ncithesaurus:Lymph_Node_Cortex"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0000029 ! lymph node @@ -81938,7 +82114,6 @@ synonym: "medulla nodi lymphoidei" RELATED LATIN [http://en.wikipedia.org/wiki/M xref: EMAPA:35529 xref: FMA:66254 xref: MA:0000745 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0000029 ! lymph node @@ -82143,7 +82318,6 @@ xref: Kidney:capsule xref: MA:0000370 xref: NCIT:C12885 xref: UMLS:C0227637 {source="ncithesaurus:Renal_Capsule"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0011824 ! fibrous connective tissue intersection_of: UBERON:0011824 ! fibrous connective tissue @@ -82530,7 +82704,7 @@ xref: TAO:0001180 xref: UMLS:C0221925 {source="ncithesaurus:Stratum_Basale"} xref: XAO:0000041 xref: ZFA:0001180 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: composed_primarily_of CL:0002187 ! basal cell of epidermis @@ -82561,7 +82735,7 @@ xref: MA:0000807 xref: NCIT:C12850 xref: Stratum:spinosum xref: UMLS:C0221924 {source="ncithesaurus:Stratum_Spinosum"} -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: composed_primarily_of CL:0000649 ! prickle cell @@ -82645,6 +82819,8 @@ xref: ZFA:0000029 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000955 ! brain +relationship: develops_from UBERON:0002346 ! neurectoderm +relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0007277 ! presumptive hindbrain relationship: immediate_transformation_of UBERON:0007277 {source="Bgee:AN"} ! presumptive hindbrain relationship: only_in_taxon NCBITaxon:89593 ! Craniata @@ -82673,7 +82849,6 @@ xref: MA:0001632 xref: NCIT:C49227 xref: UMLS:C1180206 {source="ncithesaurus:Gallbladder_Epithelium"} is_a: UBERON:0000485 ! simple columnar epithelium -is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002110 ! gall bladder relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder @@ -82740,6 +82915,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0599333 xref: MA:0001839 xref: NCIT:C32231 xref: UMLS:C0599333 {source="ncithesaurus:Bronchial_Epithelium"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002185 ! bronchus @@ -82762,7 +82938,6 @@ xref: MA:0000788 xref: NCIT:C12368 xref: OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA xref: UMLS:C0222608 {source="ncithesaurus:Areola"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 {source="MA"} ! mammary gland @@ -82954,12 +83129,10 @@ xref: VHOG:0000024 xref: XAO:0003098 xref: ZFA:0000100 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of NBO:0000347 ! gross motor coordination relationship: contributes_to_morphology_of UBERON:0001895 ! metencephalon relationship: develops_from UBERON:0006215 {evidence="definitional"} ! rhombic lip relationship: dubious_for_taxon NCBITaxon:117569 {source="http://icb.oxfordjournals.org/content/42/4/743.full"} ! Hyperoartia -relationship: never_in_taxon NCBITaxon:117565 {source="ISBN:0471888893"} ! Myxini relationship: only_in_taxon NCBITaxon:7742 {source="ISBN:0471888893"} ! Vertebrata relationship: part_of UBERON:0001895 {source="FMA", source="MA"} ! metencephalon relationship: part_of UBERON:0002028 {source="NIF", source="ZFA"} ! hindbrain @@ -83159,8 +83332,8 @@ xref: DMBA:16629 xref: EMAPA:35597 xref: FMA:68464 xref: HBA:9047 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 {source="BIRNLEX:896"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 {source="BIRNLEX:896"} xref: http://linkedlifedata.com/resource/umls/id/C0262291 xref: http://www.snomedbrowser.com/Codes/Details/369250001 xref: MA:0001072 @@ -83320,16 +83493,14 @@ xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA xref: UMLS:C0024109 {source="ncithesaurus:Lung"} xref: VHOG:0000310 xref: XAO:0000119 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000171 ! respiration organ -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system relationship: develops_from UBERON:0000118 ! lung bud relationship: in_lateral_side_of UBERON:0000170 ! pair of lungs relationship: located_in UBERON:0002224 ! thoracic cavity -relationship: never_in_taxon NCBITaxon:32443 {editor="BGEE:fb", source="https://github.com/obophenotype/uberon/issues/701"} ! Teleostei -relationship: never_in_taxon NCBITaxon:7777 {editor="BGEE:fb", source="https://github.com/obophenotype/uberon/issues/701"} ! Chondrichthyes relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0000170 {note="some species only have a single lung"} ! pair of lungs relationship: surrounded_by UBERON:0009778 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! pleural sac @@ -83433,8 +83604,6 @@ xref: MA:0000117 xref: NCIT:C32050 xref: UMLS:C1181304 {source="ncithesaurus:Adrenal_Gland_Capsule"} is_a: UBERON:0003893 ! capsule -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0002369 ! adrenal gland relationship: bounding_layer_of UBERON:0002369 ! adrenal gland @@ -83461,6 +83630,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/21476003 xref: MA:0001891 xref: MESH:D015384 xref: Zona:glomerulosa +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: capable_of GO:0032342 ! aldosterone biosynthetic process relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex @@ -83484,6 +83654,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/56069004 xref: MA:0001890 xref: MESH:D015383 xref: Zona:fasciculata +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex relationship: has_part CL:0002136 {source="FMA"} ! type II cell of adrenal cortex @@ -83507,6 +83678,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/47325000 xref: MA:0001892 xref: MESH:D015385 xref: Zona:reticularis +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex relationship: has_part CL:0002137 {source="FMA"} ! type III cell of adrenal cortex @@ -83727,6 +83899,7 @@ xref: VHOG:0000177 xref: ZFA:0000154 is_a: UBERON:0004151 ! cardiac chamber disjoint_from: UBERON:0006615 ! venous sinus +relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0007278 ! presumptive sinus venosus relationship: immediate_transformation_of UBERON:0007278 {source="Bgee:AN"} ! presumptive sinus venosus relationship: part_of UBERON:0002350 {source="VHOG"} ! conducting system of heart @@ -83863,6 +84036,8 @@ is_a: UBERON:0010314 ! structure with developmental contribution from neural cre is_a: UBERON:0013754 ! integumentary system layer relationship: composed_primarily_of UBERON:0002384 ! connective tissue relationship: deep_to UBERON:0001003 ! skin epidermis +relationship: develops_from UBERON:0002199 ! integument +relationship: develops_from UBERON:0002416 ! integumental system relationship: develops_from UBERON:0010083 ! future dermis relationship: has_developmental_contribution_from UBERON:0002342 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! neural crest relationship: has_part GO:0071953 ! elastic fiber @@ -83892,8 +84067,8 @@ xref: NCIT:C12338 xref: RETIRED_EHDAA2:0002138 xref: UMLS:C0041916 {source="ncithesaurus:Urachus"} xref: VHOG:0000735 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: continuous_with UBERON:0007118 ! umbilicus relationship: develops_from UBERON:0004340 {source="EHDAA2"} ! allantois relationship: part_of UBERON:0001255 {source="EHDAA2"} ! urinary bladder @@ -83916,7 +84091,7 @@ xref: MA:0000805 xref: NCIT:C33627 xref: Stratum:granulosum xref: UMLS:C0221923 {source="ncithesaurus:Stratum_Granulosum"} -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: composed_primarily_of CL:0000712 ! stratum granulosum cell @@ -83967,7 +84142,7 @@ xref: NCIT:C33629 xref: Stratum:lucidum xref: UMLS:C0221922 {source="ncithesaurus:Stratum_Lucidum"} xref: UMLS:C1514985 {source="ncithesaurus:Stratum_Conjunctum"} -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013754 ! integumentary system layer relationship: composed_primarily_of CL:0000312 ! keratinocyte relationship: immediately_deep_to UBERON:0002027 ! stratum corneum of epidermis @@ -84036,6 +84211,7 @@ xref: NCIT:C13317 xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA xref: UMLS:C0221971 {source="ncithesaurus:Hair_Follicle"} xref: VHOG:0001268 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036150 ! skin appendage follicle relationship: develops_from UBERON:0005086 ! hair follicle placode @@ -84058,8 +84234,6 @@ xref: MA:0000159 xref: NCIT:C33543 xref: UMLS:C0221961 {source="ncithesaurus:Shaft_of_the_Hair"} is_a: UBERON:0000021 ! cutaneous appendage -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001037 {source="https://doi.org/10.1016/j.cub.2008.12.005"} ! strand of hair [Term] @@ -84105,8 +84279,6 @@ xref: EMAPA:35388 xref: FMA:70933 xref: MA:0000157 is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000119 ! cell layer intersection_of: bounding_layer_of UBERON:0002074 ! hair shaft relationship: bounding_layer_of UBERON:0002074 ! hair shaft @@ -84127,8 +84299,6 @@ xref: FMA:70934 xref: http://www.snomedbrowser.com/Codes/Details/318832008 xref: MA:0000156 is_a: UBERON:0001851 ! cortex -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001037 ! strand of hair @@ -84274,6 +84444,7 @@ xref: VHOG:0000175 xref: ZFA:0000471 is_a: UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart +relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0010227 ! future cardiac atrium relationship: immediate_transformation_of UBERON:0010227 ! future cardiac atrium @@ -84315,6 +84486,7 @@ xref: XAO:0003193 xref: ZFA:0000009 is_a: UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart +relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0006283 ! future cardiac ventricle relationship: immediate_transformation_of UBERON:0006283 {source="Bgee:AN"} ! future cardiac ventricle @@ -84451,6 +84623,7 @@ relationship: connects UBERON:0002082 ! cardiac ventricle property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/mellybelly property_value: dc-contributor https://github.com/rfoulger +relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0007279 ! presumptive atrioventricular canal relationship: immediate_transformation_of UBERON:0007279 {source="Bgee:AN"} ! presumptive atrioventricular canal relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region @@ -84714,7 +84887,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362009004 xref: MA:0000488 xref: NCIT:C32126 xref: UMLS:C0225811 {source="ncithesaurus:Apex_of_the_Heart"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0000948 ! heart @@ -85153,13 +85325,11 @@ synonym: "set of nares" RELATED [FMA:72005] xref: FMA:72005 xref: http://en.wikipedia.org/wiki/Nares xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034925 ! anatomical collection intersection_of: UBERON:0034925 ! anatomical collection intersection_of: has_member UBERON:0000003 {minCardinality="2", maxCardinality="2"} ! naris relationship: has_member UBERON:0000003 ! naris relationship: has_part UBERON:0000003 ! naris -relationship: never_in_taxon NCBITaxon:7745 {source="http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html"} ! Petromyzontiformes relationship: part_of UBERON:0000004 ! nose [Term] @@ -85208,9 +85378,6 @@ relationship: contributes_to_morphology_of UBERON:0001173 ! biliary tree relationship: develops_from UBERON:0004912 ! biliary bud relationship: develops_from UBERON:0006242 {evidence="definitional"} ! gall bladder primordium relationship: located_in UBERON:0002323 ! coelemic cavity lumen -relationship: never_in_taxon NCBITaxon:10114 {source="ISBN:9780120749034"} ! Rattus -relationship: never_in_taxon NCBITaxon:8801 {source="GOC:mr", source="ISBN:9781840761122"} ! Struthio camelus -relationship: never_in_taxon NCBITaxon:8930 {source="GOC:mr", source="ISBN:9781840761122"} ! Columbidae relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002423 {source="MA", source="ZFA", source="cjm"} ! hepatobiliary system @@ -85355,7 +85522,6 @@ xref: XAO:0000236 is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract relationship: continuous_with UBERON:0001166 ! pylorus relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine -relationship: never_in_taxon NCBITaxon:7955 {source="ZFA:0000348"} ! Danio rerio relationship: part_of UBERON:0002108 ! small intestine relationship: proximalmost_part_of UBERON:0002108 ! small intestine @@ -85388,6 +85554,7 @@ xref: NCIT:C12388 xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA xref: UMLS:C0022378 {source="ncithesaurus:Jejunum"} xref: VHOG:0000053 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -85516,7 +85683,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/188181003 xref: MA:0000766 xref: NCIT:C33770 xref: UMLS:C0229945 {source="ncithesaurus:Thymic_Capsule"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0002370 ! thymus @@ -85539,7 +85705,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/188262003 xref: MA:0000767 xref: NCIT:C33774 xref: UMLS:C0229948 {source="ncithesaurus:Thymus_Cortex"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002370 ! thymus @@ -85568,7 +85734,6 @@ xref: MA:0000771 xref: Medulla xref: NCIT:C33775 xref: UMLS:C0229949 {source="ncithesaurus:Thymus_Medulla"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002370 ! thymus @@ -85589,7 +85754,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/187882006 xref: MA:0000770 xref: NCIT:C33772 xref: UMLS:C1522462 {source="ncithesaurus:Thymic_Lobule"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule intersection_of: part_of UBERON:0002370 ! thymus @@ -85771,7 +85936,6 @@ xref: MESH:D002529 xref: UMLS:C0007763 {source="BIRNLEX:1568"} is_a: UBERON:0007245 ! nuclear complex of neuraxis is_a: UBERON:0019263 ! gray matter of hindbrain -relationship: never_in_taxon NCBITaxon:32443 {contributor="michaelerice", source="http://www.ncbi.nlm.nih.gov/pubmed/17134989", source="http://www.ncbi.nlm.nih.gov/pubmed/2040726"} ! Teleostei relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -86411,9 +86575,12 @@ xref: http://www.snomedbrowser.com/Codes/Details/369028007 xref: MA:0001027 xref: MBA:462 xref: UMLS:C0175447 {source="BIRNLEX:1131"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010125 ! future superior salivatory nucleus relationship: immediate_transformation_of UBERON:0010125 {evidence="definitional"} ! future superior salivatory nucleus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata @@ -86827,7 +86994,6 @@ xref: UMLS:C0228530 {source="BIRNLEX:2636"} xref: UMLS:C1289468 {source="BIRNLEX:2636"} xref: ZFA:0005146 is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 {source="MA", source="ZFA"} ! medulla oblongata relationship: part_of UBERON:0002422 ! fourth ventricle @@ -86927,6 +87093,8 @@ xref: XAO:0000066 xref: ZFA:0001320 is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! heart layer +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0005498 ! primitive heart tube relationship: develops_from UBERON:0007280 ! presumptive endocardium relationship: has_part UBERON:0005316 ! endocardial endothelium relationship: immediate_transformation_of UBERON:0007280 {source="Bgee:AN"} ! presumptive endocardium @@ -87115,7 +87283,6 @@ xref: FMA:7340 xref: http://www.snomedbrowser.com/Codes/Details/201806004 xref: MA:0000419 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] @@ -87353,6 +87520,7 @@ xref: NCIT:C12284 xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA xref: UMLS:C0024496 {source="ncithesaurus:Main_Bronchus"} xref: VHOG:0000370 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002185 ! bronchus relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium relationship: distally_connected_to UBERON:0002183 ! lobar bronchus @@ -87451,7 +87619,6 @@ xref: VHOG:0000262 xref: XAO:0000121 is_a: UBERON:0000117 ! respiratory tube relationship: located_in UBERON:0002224 ! thoracic cavity -relationship: never_in_taxon NCBITaxon:8507 {source="Wikipedia"} ! Sphenodon relationship: part_of UBERON:0007196 ! tracheobronchial tree [Term] @@ -87599,7 +87766,6 @@ xref: PBA:10054 xref: PBA:128012354 xref: UMLS:C0152316 {source="ncithesaurus:Subiculum"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation @@ -87634,7 +87800,6 @@ xref: TAO:0001075 xref: UMLS:C0262212 {source="ncithesaurus:Choroidal_Fissure"} xref: VHOG:0001756 xref: ZFA:0001075 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0005412 ! optic fissure relationship: part_of UBERON:0005358 ! ventricle of nervous system @@ -87669,7 +87834,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/327532004 xref: MA:0000739 xref: NCIT:C33028 xref: UMLS:C0229699 {source="ncithesaurus:Lymph_Node_Capsule"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0000029 ! lymph node @@ -87692,7 +87856,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1184179 xref: MA:0000746 xref: NCIT:C33035 xref: UMLS:C1184179 {source="ncithesaurus:Lymph_Node_Trabecula"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000440 ! trabecula intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0000029 ! lymph node @@ -87970,7 +88133,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/4419000 xref: MA:0001860 xref: NCIT:C49307 xref: UMLS:C0225586 {source="ncithesaurus:Trachea_Submucosa"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0003126 ! trachea @@ -88112,7 +88274,6 @@ xref: UMLS:C0024670 {source="ncithesaurus:Mamillary_Body"} xref: UMLS:C1305759 {source="BIRNLEX:865"} xref: ZFA:0000334 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0000349 {source="GO"} ! limbic system relationship: part_of UBERON:0002272 {source="ABA"} ! medial zone of hypothalamus @@ -88144,7 +88305,6 @@ xref: MA:0001334 xref: NCIT:C33895 xref: UMLS:C0043356 {source="ncithesaurus:Xiphoid_Process"} xref: Xiphoid:process -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000975 ! sternum relationship: serially_homologous_to UBERON:0002208 {subset="musculoskeletal", source="ISBN:0073040584"} ! sternebra @@ -88420,13 +88580,12 @@ xref: MESH:A08.713.840 xref: NLXANAT:100314 xref: Subfornical:organ is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002663 {source="MA-modified"} ! septal nuclear complex [Term] id: UBERON:0002221 name: fontanelle -def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [http://en.wikipedia.org/wiki/Fontanelle] +def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [http://en.wikipedia.org/wiki/Fontanelle, https://orcid.org/0000-0002-2825-0621] subset: pheno_slim subset: uberon_slim subset: vertebrate_core @@ -88443,8 +88602,8 @@ xref: NCIT:C32621 xref: TAO:0001738 xref: UMLS:C0224548 {source="ncithesaurus:Fontanelle"} xref: ZFA:0005536 -is_a: CARO:0000000 ! anatomical entity -is_a: UBERON:0007651 {source="FMA"} ! anatomical junction +is_a: UBERON:0002209 {source="FMA"} ! fibrous joint +is_a: UBERON:0003685 ! cranial suture relationship: adjacent_to UBERON:0003685 ! cranial suture relationship: part_of UBERON:0001703 {source="MA", source="ZFA"} ! neurocranium @@ -88469,7 +88628,6 @@ xref: TAO:0001643 xref: VSAO:0000036 xref: XAO:0004049 xref: ZFA:0001634 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 {source="VSAO"} ! connective tissue relationship: bounding_layer_of UBERON:0007844 ! cartilage element property_value: dc-contributor https://github.com/cmungall @@ -88495,6 +88653,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279810008 xref: MA:0001188 xref: MESH:D004712 xref: VHOG:0000791 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006937 ! inner ear epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac relationship: develops_from UBERON:0006226 {source="EHDAA2"} ! endolymphatic appendage @@ -88525,7 +88684,6 @@ xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA xref: Thoracic:cavity xref: UMLS:C0230139 {source="ncithesaurus:Thoracic_Cavity"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000915 ! thoracic segment of trunk @@ -88551,7 +88709,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/367767002 xref: MA:0001396 xref: NCIT:C52715 xref: UMLS:C0230143 {source="ncithesaurus:Costal_Arch"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0002228 {source="MA"} ! rib @@ -88576,9 +88733,7 @@ xref: MESH:D001489 xref: NCIT:C13179 xref: UMLS:C0004816 {source="BIRNLEX:2521"} xref: UMLS:C0004816 {source="ncithesaurus:Basilar_Membrane"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0001864 ! scala tympani relationship: adjacent_to UBERON:0002295 ! scala media relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth @@ -88618,8 +88773,6 @@ xref: UMLS:C0029207 {source="ncithesaurus:Organ_of_Corti"} xref: UMLS:C0029207 {source="BIRNLEX:2526"} xref: VHOG:0001567 is_a: UBERON:0000020 ! sense organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of GO:0050910 ! detection of mechanical stimulus involved in sensory perception of sound relationship: dubious_for_taxon NCBITaxon:8292 ! Amphibia relationship: dubious_for_taxon NCBITaxon:8457 ! Sauropsida @@ -88776,9 +88929,7 @@ xref: NCIT:C33740 xref: UMLS:C0039432 {source="ncithesaurus:Tectorial_Membrane"} xref: UMLS:C1184928 {source="BIRNLEX:2531"} is_a: CARO:0000003 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: attaches_to UBERON:0002276 {notes="limbal zone"} ! lamina of spiral limbus relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth @@ -88827,7 +88978,6 @@ xref: MA:0001417 xref: NCIT:C52729 xref: Tubercle:(rib) xref: UMLS:C0222809 {source="ncithesaurus:Rib_Tubercle"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection intersection_of: UBERON:0005813 ! tubercle @@ -88969,6 +89119,8 @@ is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0003076 ! posterior neural tube relationship: develops_from UBERON:0006241 ! future spinal cord relationship: has_developmental_contribution_from UBERON:0003853 {evidence="definitional"} ! spinal cord neural crest @@ -88991,7 +89143,6 @@ xref: http://en.wikipedia.org/wiki/Chondrocranium xref: TAO:0001424 xref: VHOG:0000288 xref: ZFA:0001424 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system [Term] @@ -89014,7 +89165,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/316586000 xref: MA:0000112 xref: Nucleus:pulposus is_a: UBERON:0002384 ! connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001066 ! intervertebral disk relationship: develops_from UBERON:0002328 {editor="mah", source="ISBN:0073040584", source="Wikipedia"} ! notochord @@ -89066,9 +89216,31 @@ xref: ZFA:0000567 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0000165 ! mouth +relationship: develops_from UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0001434 ! skeletal system +relationship: develops_from UBERON:0001456 ! face +relationship: develops_from UBERON:0001555 ! digestive tract +relationship: develops_from UBERON:0001708 ! jaw skeleton +relationship: develops_from UBERON:0001709 ! upper jaw region +relationship: develops_from UBERON:0002204 ! musculoskeletal system +relationship: develops_from UBERON:0003113 ! dermatocranium +relationship: develops_from UBERON:0003129 ! skull +relationship: develops_from UBERON:0003277 ! skeleton of upper jaw +relationship: develops_from UBERON:0004089 ! midface +relationship: develops_from UBERON:0004288 ! skeleton +relationship: develops_from UBERON:0007811 ! craniocervical region +relationship: develops_from UBERON:0010323 ! cranial skeletal system +relationship: develops_from UBERON:0010364 ! dermal skeleton +relationship: develops_from UBERON:0011137 ! axial skeletal system +relationship: develops_from UBERON:0011156 ! facial skeleton +relationship: develops_from UBERON:0011595 ! jaw region relationship: develops_from UBERON:0011628 ! early premaxilla +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: immediate_transformation_of UBERON:0011628 {source="Bgee:AN"} ! early premaxilla -relationship: never_in_taxon NCBITaxon:7901 {source="Wikipedia"} ! Acipenser relationship: part_of UBERON:0003113 {source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0003277 {source="VHOG"} ! skeleton of upper jaw relationship: part_of UBERON:0011156 ! facial skeleton @@ -89112,6 +89284,7 @@ relationship: part_of UBERON:0002129 ! cerebellar cortex id: UBERON:0002246 name: dorsal thoracic nucleus def: "Two column-shaped nuclear masses formed by large cells. Clarke's nuclei are located in the regions dorsolateral to the central canal in the thoratic and upper lumbar segments." [NLXANAT:20090102] +comment: "Created by Sarah M. Maynard" xsd:string subset: uberon_slim synonym: "Clarke's column" EXACT [] synonym: "Clarke's nuclei" RELATED PLURAL [NLXANAT:20090102] @@ -89148,7 +89321,6 @@ xref: FMA:77053 xref: http://www.snomedbrowser.com/Codes/Details/245480007 xref: MA:0000393 xref: Uterine:horns -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0015212 ! lateral structure @@ -89273,7 +89445,6 @@ xref: Thyroglossal:duct xref: UMLS:C0231104 {source="ncithesaurus:Thyroglossal_Duct"} xref: VHOG:0000746 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: part_of UBERON:0002046 {source="MA", source="VHOG"} ! thyroid gland @@ -89465,8 +89636,8 @@ xref: MA:0002567 xref: MESH:A08.186.211.132.659.237 xref: NCIT:C12461 xref: UMLS:C0010087 {source="ncithesaurus:Corpora_Quadrigemina"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002314 ! midbrain tectum relationship: develops_from UBERON:0006777 ! tectal plate relationship: part_of UBERON:0002314 ! midbrain tectum @@ -89591,6 +89762,7 @@ xref: MA:0000896 xref: NCIT:C32977 xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA xref: UMLS:C0162342 {source="ncithesaurus:Lenticular_Nucleus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: has_part UBERON:0001874 ! putamen @@ -89625,8 +89797,8 @@ xref: EV:0100173 xref: FMA:77624 xref: GAID:633 xref: HBA:9303 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 xref: http://linkedlifedata.com/resource/umls/id/C0028936 xref: http://www.snomedbrowser.com/Codes/Details/279394006 xref: MA:0000194 @@ -89640,7 +89812,6 @@ xref: VHOG:0000033 xref: XAO:0004180 xref: ZFA:0000402 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon relationship: capable_of GO:0007608 ! sensory perception of smell @@ -89773,7 +89944,6 @@ xref: FMA:77663 xref: http://en.wikipedia.org/wiki/Persistent_pupillary_membrane xref: MA:0001293 is_a: UBERON:0000158 ! membranous layer -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: located_in UBERON:0001771 {source="MA-modified"} ! pupil relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001769 ! iris @@ -89845,7 +90015,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2291 xref: MA:0000837 xref: MBA:467 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0002273 {source="lexical"} ! lateral zone of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus @@ -89863,7 +90032,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2290 xref: MA:0000833 xref: MBA:290 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] @@ -89917,8 +90085,6 @@ xref: FMA:77721 xref: http://en.wikipedia.org/wiki/Limbus_laminae_spiralis xref: MA:0001191 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] @@ -89929,7 +90095,6 @@ synonym: "sulcus spiralis" EXACT [] xref: EMAPA:35800 xref: FMA:77744 xref: MA:0001195 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth @@ -89946,7 +90111,6 @@ xref: FMA:77745 xref: http://www.snomedbrowser.com/Codes/Details/362576001 xref: Perilymphatic:space xref: ZFA:0005459 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0001839 ! bony labyrinth relationship: adjacent_to UBERON:0001849 ! membranous labyrinth @@ -89964,8 +90128,6 @@ xref: GAID:885 xref: MA:0001186 xref: MESH:D014723 xref: Vestibular:aqueduct -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0036074 ! vein of vestibular aqueduct @@ -90000,8 +90162,6 @@ xref: TAO:0001621 xref: UMLS:C0029894 {source="ncithesaurus:Otolith"} xref: ZFA:0001617 is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0009590 ! detection of gravity relationship: composed_primarily_of CHEBI:3311 ! calcium carbonate relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -90029,8 +90189,6 @@ xref: MA:0001200 xref: NCIT:C33083 xref: Reissner's:membrane is_a: UBERON:0000094 ! membrane organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0001863 ! scala vestibuli relationship: adjacent_to UBERON:0002295 ! scala media relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth @@ -90062,7 +90220,6 @@ xref: MESH:D013316 xref: Stria:vascularis xref: UMLS:C0229477 {source="BIRNLEX:2525"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_developmental_contribution_from UBERON:0002342 {notes="pigment cells", source="NCBIBook:NBK53175"} ! neural crest relationship: part_of UBERON:0001855 {source="FMA", source="MA"} ! cochlear duct of membranous labyrinth @@ -90081,7 +90238,6 @@ xref: EMAPA:35582 xref: FMA:77856 xref: MA:0002707 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001705 ! nail relationship: site_of GO:0008283 ! cell population proliferation @@ -90233,7 +90389,6 @@ xref: Optic:recess xref: TAO:0000049 xref: VHOG:0000595 xref: ZFA:0000049 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002286 ! third ventricle @@ -90327,7 +90482,6 @@ xref: UMLS:C0007769 {source="ncithesaurus:Aqueduct_of_Sylvius"} xref: VHOG:0000832 xref: ZFA:0000159 is_a: UBERON:0004086 ! brain ventricle -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0013148 {source="EHDAA2"} ! early midbrain vesicle relationship: part_of UBERON:0001891 ! midbrain @@ -90360,7 +90514,6 @@ xref: VHOG:0001375 xref: ZFA:0001446 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0006694 ! cerebellum vasculature -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002037 ! cerebellum @@ -90600,7 +90753,6 @@ xref: VHOG:0001457 xref: ZFA:0001707 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: continuous_with UBERON:0002240 ! spinal cord relationship: contributes_to_morphology_of UBERON:0000955 ! brain relationship: has_part UBERON:0001896 ! medulla oblongata @@ -90635,7 +90787,6 @@ xref: MESH:D011650 xref: Pulmonary:alveolus xref: VHOG:0001445 is_a: UBERON:0003215 ! alveolus -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0002048 ! lung relationship: contains_process GO:0007585 ! respiratory gaseous exchange by respiratory system @@ -91117,8 +91268,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0017655 xref: MA:0002617 xref: NCIT:C33101 xref: UMLS:C0017655 {source="ncithesaurus:Mesangium"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000119 ! cell layer intersection_of: composed_primarily_of CL:0000650 ! mesangial cell intersection_of: located_in UBERON:0005777 ! glomerular basement membrane @@ -91143,7 +91294,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/244574009 xref: MA:0002606 xref: MESH:A05.810.453.736.520.380 is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0002319 ! mesangium relationship: part_of UBERON:0004190 {source="GO"} ! renal glomerulus vasculature @@ -91157,7 +91307,6 @@ xref: EMAPA:28278 xref: FMA:84141 xref: MA:0002602 is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001229 {source="MA"} ! renal corpuscle relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus relationship: part_of UBERON:0002319 {source="MA"} ! mesangium @@ -91246,11 +91395,9 @@ xref: http://linkedlifedata.com/resource/umls/id/C1710584 xref: MA:0001686 xref: NCIT:C49309 xref: UMLS:C1710584 {source="ncithesaurus:Urethra_Epithelium"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003914 {source="GO"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006555 ! excretory tube -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -91269,7 +91416,6 @@ xref: EMAPA:37785 {source="MA:th"} xref: FMA:85276 xref: MA:0001689 is_a: UBERON:0000030 ! lamina propria -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -91324,7 +91470,6 @@ xref: VSAO:0000032 xref: XAO:0000055 xref: ZFA:0000135 is_a: UBERON:0000481 {source="VSAO"} ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/wdahdul @@ -91377,7 +91522,6 @@ is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0007503 {source="EHDAA2"} ! epithelial vesicle relationship: develops_from UBERON:0003059 {source="ZFA"} ! presomitic mesoderm -relationship: never_in_taxon NCBITaxon:7712 {source="http://www.ncbi.nlm.nih.gov/pubmed/17237766"} ! Tunicata relationship: only_in_taxon NCBITaxon:7711 {source="GOTAX:0000352"} ! Chordata [Term] @@ -91439,6 +91583,7 @@ xref: NCIT:C34320 xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA xref: Umbilical:cord xref: UMLS:C0041633 {source="ncithesaurus:Umbilical_Cord"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: connects UBERON:0000922 ! embryo relationship: connects UBERON:0001987 ! placenta @@ -91492,7 +91637,6 @@ xref: NCIT:C33649 xref: Submandibular:duct xref: UMLS:C0227472 {source="ncithesaurus:Submandibular_Duct"} is_a: UBERON:0001837 ! duct of salivary gland -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001837 ! duct of salivary gland intersection_of: part_of UBERON:0001736 ! submandibular gland relationship: channels_from UBERON:0001736 ! submandibular gland @@ -91555,7 +91699,6 @@ xref: VHOG:0001608 is_a: UBERON:0002473 {source="FMA-part_of", source="MA"} ! intercerebral commissure is_a: UBERON:0005340 {source="MP"} ! dorsal telencephalic commissure relationship: contributes_to_morphology_of UBERON:0001893 ! telencephalon -relationship: never_in_taxon NCBITaxon:9255 {source="Wikipedia"} ! Monotremata relationship: only_in_taxon NCBITaxon:9347 {source="Wikipedia"} ! Eutheria [Term] @@ -91572,7 +91715,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/254115004 xref: MA:0002734 xref: NCIT:C32516 xref: UMLS:C0227849 {source="ncithesaurus:Endometrial_Stroma"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma @@ -91608,7 +91750,6 @@ xref: MA:0001836 xref: NCIT:C49212 xref: UMLS:C1707054 {source="ncithesaurus:Bronchus_Lamina_Propria"} is_a: UBERON:0000031 ! lamina propria of trachea -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0000410 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! bronchial mucosa @@ -91762,7 +91903,6 @@ xref: EMAPA:18605 xref: FMA:87217 xref: http://www.snomedbrowser.com/Codes/Details/181301002 xref: MA:0002572 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001514 ! descending aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta @@ -91789,7 +91929,7 @@ xref: EHDAA:1498 xref: EHDAA:255 xref: EMAPA:16073 xref: EV:0100004 -xref: FBbt:00001061 +xref: FBbt:00001057 xref: FMA:87657 xref: http://en.wikipedia.org/wiki/Neuroectoderm xref: http://linkedlifedata.com/resource/umls/id/C1518271 @@ -92139,6 +92279,7 @@ xref: MESH:A01.673 xref: NCIT:C12767 xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA xref: UMLS:C0030797 {source="ncithesaurus:Pelvis"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000475 ! organism subdivision relationship: has_part UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0002417 ! abdominal segment of trunk @@ -92279,7 +92420,10 @@ is_a: UBERON:0000094 {source="FMA"} ! membrane organ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: composed_primarily_of UBERON:0002384 ! connective tissue +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0007645 ! future meninx +relationship: develops_from UBERON:0010743 ! meningeal cluster relationship: fma_set_term FMA:76821 relationship: immediate_transformation_of UBERON:0007645 {source="Bgee:AN"} ! future meninx relationship: part_of UBERON:0010743 ! meningeal cluster @@ -92386,7 +92530,6 @@ relationship: composed_primarily_of UBERON:0011823 ! dense connective tissue relationship: continuous_with UBERON:0001773 {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288"} ! sclera relationship: develops_from UBERON:0007647 ! ectomeninx relationship: immediate_transformation_of UBERON:0007647 {evidence="definitional"} ! ectomeninx -relationship: never_in_taxon NCBITaxon:32443 {source="ISBN:0073040584"} ! Teleostei [Term] id: UBERON:0002364 @@ -92416,15 +92559,14 @@ xref: Tympanic:membrane xref: UMLS:C0041445 {source="ncithesaurus:Tympanic_Membrane"} xref: VHOG:0001146 xref: XAO:0000212 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000094 {source="FMA"} ! membrane organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0004114 {source="cjm"} ! tympanic cavity relationship: contributes_to_morphology_of UBERON:0001756 ! middle ear relationship: develops_from UBERON:0009213 {source="Wikipedia"} ! pharyngeal membrane of 1st arch relationship: has_part UBERON:0005042 ! inner epithelial layer of tympanic membrane relationship: has_part UBERON:0010069 ! outer epithelial layer of tympanic membrane relationship: has_part UBERON:0010070 ! intermediate layer of tympanic membrane -relationship: never_in_taxon NCBITaxon:8459 {source="Wikipedia"} ! Testudines relationship: part_of UBERON:0001756 {source="MA"} ! middle ear [Term] @@ -92602,6 +92744,7 @@ xref: VHOG:0001141 xref: XAO:0000164 is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006858 ! adrenal/interrenal gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: has_developmental_contribution_from UBERON:0000926 {source="Wikipedia"} ! mesoderm relationship: has_developmental_contribution_from UBERON:0002342 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! neural crest @@ -92694,7 +92837,6 @@ xref: UMLS:C0005953 {source="ncithesaurus:Bone_Marrow"} xref: VHOG:0001218 xref: XAO:0000123 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000479 ! tissue intersection_of: has_part UBERON:0012429 ! hematopoietic tissue intersection_of: part_of UBERON:0001474 ! bone element @@ -92763,7 +92905,6 @@ xref: Palatine:tonsil xref: UMLS:C0040421 {source="ncithesaurus:Palatine_Tonsil"} xref: VHOG:0001140 is_a: UBERON:0002372 ! tonsil -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010023 {notes="the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract", source="http://www.ncbi.nlm.nih.gov/pubmed/20144910", source="ISBN:1607950324", source="MP:anna"} ! dorsal part of pharyngeal pouch 2 relationship: dubious_for_taxon NCBITaxon:9989 {source="http://www.ncbi.nlm.nih.gov/pubmed/20144910"} ! Rodentia @@ -92971,7 +93112,6 @@ xref: Trapezius:muscle xref: UMLS:C0224361 {source="ncithesaurus:Trapezius_Muscle"} xref: VHOG:0000834 is_a: UBERON:0001482 ! muscle of shoulder -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0010955 ! trapezius pre-muscle mass relationship: has_muscle_antagonist UBERON:0001112 {source="dbpedia"} ! latissimus dorsi muscle @@ -93038,7 +93178,6 @@ xref: VHOG:0000863 xref: XAO:0004128 is_a: UBERON:0002461 ! anterior abdominal wall muscle is_a: UBERON:0003897 ! axial muscle -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: has_muscle_insertion UBERON:0000975 ! sternum relationship: has_muscle_origin UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0006635 {source="VHOG"} ! anterior abdominal wall @@ -93394,10 +93533,9 @@ xref: NCIT:C33161 xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA xref: UMLS:C0027437 {source="ncithesaurus:Nasolacrimal_Duct"} xref: VHOG:0000664 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube is_a: UBERON:0000058 ! duct -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: channel_for UBERON:0001827 ! secretion of lacrimal gland relationship: connects UBERON:0001351 ! lacrimal sac relationship: connects UBERON:0001707 ! nasal cavity @@ -93435,8 +93573,8 @@ xref: NCIT:C12500 xref: UMLS:C0015183 {source="ncithesaurus:Eustachian_Tube"} xref: VHOG:0001145 xref: XAO:0000213 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 {source="FMA"} ! organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_developmental_contribution_from UBERON:0010020 {source="UBERON:0010062"} ! tubotympanic recess epithelium relationship: has_part UBERON:0010062 ! pharyngotympanic tube epithelium relationship: part_of UBERON:0001756 ! middle ear @@ -93651,6 +93789,7 @@ xref: NCIT:C32981 xref: UMLS:C0230260 {source="ncithesaurus:Lesser_Omentum"} xref: VHOG:0000357 is_a: UBERON:0003688 ! omentum +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009870 ! zone of stomach relationship: develops_from UBERON:0005626 {source="EHDAA2", source="Wikipedia"} ! ventral mesogastrium relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum @@ -93675,7 +93814,6 @@ xref: Parietal:pleura xref: UMLS:C0225777 {source="ncithesaurus:Parietal_Pleura"} xref: VHOG:0001495 is_a: CARO:0000003 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: adjacent_to UBERON:0002224 ! thoracic cavity @@ -93709,7 +93847,6 @@ xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA xref: UMLS:C0225776 {source="ncithesaurus:Visceral_Pleura"} xref: VHOG:0001496 is_a: CARO:0000003 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0022350 ! visceral serous membrane intersection_of: UBERON:0004923 ! organ component layer intersection_of: adjacent_to UBERON:0002048 ! lung @@ -93971,7 +94108,6 @@ xref: UMLS:C0004388 {source="BIRNLEX:1123"} xref: UMLS:C1305381 {source="BIRNLEX:1123"} xref: VHOG:0000396 xref: ZFA:0001574 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -94000,8 +94136,8 @@ xref: NCIT:C12308 xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA xref: UMLS:C0008984 {source="ncithesaurus:Clitoris"} xref: VHOG:0000700 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 {source="Wikipedia"} ! organ -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: contributes_to_morphology_of UBERON:0005056 ! external female genitalia relationship: develops_from UBERON:0005876 {source="EHDAA2", source="Wikipedia"} ! undifferentiated genital tubercle @@ -94041,7 +94177,6 @@ intersection_of: UBERON:0010913 ! vertebral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue relationship: composed_primarily_of UBERON:0002481 ! bone tissue relationship: develops_from UBERON:0011094 ! vertebra cartilage element -relationship: never_in_taxon NCBITaxon:7901 {source="Wikipedia"} ! Acipenser relationship: part_of UBERON:0001130 ! vertebral column [Term] @@ -94122,7 +94257,6 @@ xref: MIAA:0000094 xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA xref: WBbt:0005741 is_a: UBERON:0011676 ! subdivision of organism along main body axis -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0000154 ! posterior region of body @@ -94259,7 +94393,6 @@ xref: FMA:71878 xref: http://www.snomedbrowser.com/Codes/Details/110485007 xref: MA:0000146 is_a: UBERON:0003297 ! gland of integumental system -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006003 ! integumentary adnexa intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002097 ! skin of body @@ -94319,7 +94452,6 @@ xref: MBA:1089 xref: PBA:4003 xref: UMLS:C0175202 {source="BIRNLEX:715"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:40674 {source="http://en.wikipedia.org/wiki/Hippocampus"} ! Mammalia relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! pallium relationship: part_of UBERON:0000956 {source="MBA-indirect", source="NIFSTD"} ! cerebral cortex @@ -94373,7 +94505,6 @@ xref: VHOG:0000006 xref: XAO:0003099 xref: ZFA:0000110 is_a: UBERON:0004086 ! brain ventricle -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004086 ! brain ventricle intersection_of: part_of UBERON:0002028 ! hindbrain relationship: contributes_to_morphology_of UBERON:0002028 ! hindbrain @@ -94640,11 +94771,9 @@ xref: TAO:0001197 xref: VHOG:0001178 xref: ZFA:0001197 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0002198 ! neurohypophysis relationship: adjacent_to UBERON:0006377 ! remnant of Rathke's pouch relationship: contributes_to_morphology_of UBERON:0000007 ! pituitary gland -relationship: never_in_taxon NCBITaxon:8782 {source="ISBN:0471888893"} ! Aves relationship: part_of UBERON:0002196 {source="FMA", source="ZFA"} ! adenohypophysis relationship: present_in_taxon NCBITaxon:117569 {source="Ariens, p. 1192"} ! Hyperoartia @@ -94670,8 +94799,6 @@ xref: Pars:tuberalis xref: TAO:0001196 xref: VHOG:0001114 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -relationship: never_in_taxon NCBITaxon:7955 {source="ZFA:0001196"} ! Danio rerio relationship: part_of UBERON:0002196 ! adenohypophysis [Term] @@ -95079,7 +95206,6 @@ xref: RETIRED_EHDAA2:0000979 xref: UMLS:C0229224 {source="ncithesaurus:Lens_Fiber"} xref: VHOG:0000444 xref: XAO:0004096 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: composed_primarily_of CL:0011004 ! lens fiber cell @@ -95239,6 +95365,7 @@ xref: MESH:D003656 xref: MIAA:0000290 xref: NCIT:C32425 xref: UMLS:C0011106 {source="ncithesaurus:Decidua"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 {source="FMA"} ! extraembryonic structure relationship: contributes_to_morphology_of UBERON:0001987 ! placenta relationship: develops_from UBERON:0000459 ! uterine wall @@ -95267,7 +95394,6 @@ xref: NCIT:C33842 xref: UMLS:C1183035 {source="ncithesaurus:Uterine_Gland"} xref: Uterine:glands is_a: UBERON:0000414 {source="MP"} ! mucous gland -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0002530 ! gland @@ -95697,7 +95823,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362127004 xref: MA:0002680 xref: NCIT:C32538 xref: UMLS:C0227176 {source="ncithesaurus:Esophageal_Mucosa"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001043 ! esophagus @@ -96190,7 +96315,6 @@ xref: FMA:75147 xref: FMA:83698 xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_cavity xref: MA:0002783 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: dubious_for_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} ! Danio rerio relationship: part_of UBERON:0001439 ! compact bone tissue @@ -96239,7 +96363,6 @@ xref: MA:0002788 xref: MESH:D005931 xref: NCIT:C12724 xref: UMLS:C0017681 {source="ncithesaurus:Glottis"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: contributes_to_morphology_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -96262,7 +96385,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362105008 xref: MA:0002792 xref: MESH:A14.254.900.265 xref: Tooth:cavity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity relationship: contributes_to_morphology_of UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001091 ! calcareous tooth @@ -96308,7 +96430,6 @@ xref: FMA:52928 xref: http://www.snomedbrowser.com/Codes/Details/244510008 xref: MA:0002795 xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: connects UBERON:0000209 ! tetrapod frontal bone @@ -96354,7 +96475,6 @@ xref: FMA:52933 xref: http://www.snomedbrowser.com/Codes/Details/361830007 xref: Lambdoid:suture xref: MA:0002797 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: connects UBERON:0000210 ! tetrapod parietal bone @@ -96379,7 +96499,6 @@ xref: FMA:52929 xref: http://www.snomedbrowser.com/Codes/Details/244511007 xref: MA:0002798 xref: Sagittal:suture -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: connects UBERON:0000210 {minCardinality="2", maxCardinality="2"} ! tetrapod parietal bone @@ -96439,7 +96558,6 @@ xref: Papillary:muscle xref: UMLS:C0030352 {source="ncithesaurus:Papillary_Muscle"} xref: VHOG:0001392 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] @@ -96481,9 +96599,7 @@ synonym: "stapes footplate" EXACT [MA:0002804] xref: FMA:52769 xref: http://www.snomedbrowser.com/Codes/Details/279685009 xref: MA:0002804 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001687 ! stapes bone relationship: part_of UBERON:0001687 {source="MA"} ! stapes bone @@ -96536,7 +96652,6 @@ xref: Deltoid:tuberosity xref: EMAPA:25052 xref: FMA:23418 xref: MA:0002808 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0000976 ! humerus @@ -96557,8 +96672,6 @@ xref: MA:0002809 xref: NCIT:C32336 xref: UMLS:C0931689 {source="ncithesaurus:Cochlear_Labyrinth"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: located_in UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth @@ -96605,7 +96718,6 @@ xref: MA:0002813 xref: MESH:D010046 xref: NCIT:C32593 xref: Oval:window -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull is_a: UBERON:0036253 ! orifice of skull relationship: part_of UBERON:0001694 ! petrous part of temporal bone @@ -96629,7 +96741,6 @@ xref: MA:0002814 xref: MESH:D012405 xref: NCIT:C32594 xref: Round:window -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull is_a: UBERON:0036253 ! orifice of skull relationship: part_of UBERON:0001694 ! petrous part of temporal bone @@ -96684,8 +96795,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/149380004 xref: MA:0002824 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0018231 ! labyrinthine artery relationship: located_in UBERON:0006723 ! cochlear modiolus relationship: part_of UBERON:0001846 ! internal ear @@ -96772,7 +96881,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0229792 xref: MA:0002829 xref: NCIT:C77641 xref: UMLS:C0229792 {source="ncithesaurus:Mesenteric_Lymph_Node"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node intersection_of: UBERON:0002507 ! abdominal lymph node intersection_of: part_of UBERON:0002095 ! mesentery @@ -96820,8 +96928,8 @@ xref: FMA:7269 xref: http://www.snomedbrowser.com/Codes/Details/118755002 xref: MA:0002831 xref: Trabeculae:carneae +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000440 ! trabecula -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002082 {source="WP"} ! cardiac ventricle @@ -96972,7 +97080,6 @@ xref: MESH:D019291 xref: MFMO:0000044 xref: NCIT:C12493 xref: UMLS:C0149543 {source="ncithesaurus:Base_of_the_Skull"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system relationship: contributes_to_morphology_of UBERON:0003128 ! cranium relationship: part_of UBERON:0001703 ! neurocranium @@ -96998,9 +97105,8 @@ xref: Otolith:organ xref: TAO:0000559 xref: VHOG:0001676 xref: ZFA:0000559 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006585 ! vestibular organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0060007 ! linear vestibuloocular reflex relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001862 ! vestibular labyrinth @@ -97021,9 +97127,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362571006 xref: MA:0002842 xref: MESH:D010037 xref: Otolithic:membrane -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005764 ! acellular membrane intersection_of: composed_primarily_of UBERON:0002280 ! otolith intersection_of: part_of UBERON:0016567 ! statoconial membrane @@ -97227,6 +97331,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1268195 xref: MA:0002889 xref: NCIT:C38630 xref: UMLS:C1268195 {source="ncithesaurus:Extremity_Part"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010538 ! paired limb/fin segment intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: part_of UBERON:0002101 ! limb @@ -97363,7 +97468,6 @@ intersection_of: UBERON:0004708 ! paired limb/fin intersection_of: has_skeleton UBERON:0010713 ! paired fin skeleton relationship: develops_from UBERON:0002531 {source="PHENOSCAPE:wd", source="ZFA"} ! paired fin bud relationship: has_skeleton UBERON:0010713 ! paired fin skeleton -relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda [Term] id: UBERON:0002535 @@ -97376,7 +97480,6 @@ xref: http://en.wikipedia.org/wiki/Gill xref: MESH:D005880 is_a: UBERON:0000062 ! organ relationship: confers_advantage_in ENVO:00002030 ! aquatic biome -relationship: never_in_taxon NCBITaxon:32524 ! Amniota relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001004 ! respiratory system @@ -97395,7 +97498,6 @@ xref: http://en.wikipedia.org/wiki/Sensillum xref: MAT:0000163 xref: MIAA:0000163 xref: TGMA:0000540 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0001016 ! nervous system @@ -97440,7 +97542,6 @@ xref: TAO:0000026 xref: VHOG:0000078 xref: XAO:0000034 xref: ZFA:0000026 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 {source="GO"} ! gland relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000922 ! embryo @@ -97507,9 +97608,9 @@ xref: TAO:0000034 xref: VHOG:0001243 xref: XAO:0000095 xref: ZFA:0000034 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001032 ! sensory system relationship: has_part UBERON:0010202 ! lateral line -relationship: never_in_taxon NCBITaxon:32524 {source="http://tolweb.org/Amniota"} ! Amniota relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata [Term] @@ -97524,7 +97625,6 @@ xref: MAT:0000255 xref: MIAA:0000255 xref: TAO:0000111 xref: ZFA:0000111 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -97547,15 +97647,6 @@ xref: MIAA:0000257 xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA xref: Scale:(zoology) is_a: UBERON:0003102 ! surface structure -relationship: never_in_taxon NCBITaxon:311790 ! Afrotheria -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires -relationship: never_in_taxon NCBITaxon:33554 ! Carnivora -relationship: never_in_taxon NCBITaxon:7745 ! Petromyzontiformes -relationship: never_in_taxon NCBITaxon:91561 ! Artiodactyla -relationship: never_in_taxon NCBITaxon:9348 ! Xenarthra -relationship: never_in_taxon NCBITaxon:9362 ! Eulipotyphla -relationship: never_in_taxon NCBITaxon:9397 ! Chiroptera -relationship: never_in_taxon NCBITaxon:9787 ! Perissodactyla relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0002416 ! integumental system relationship: present_in_taxon NCBITaxon:9972 @@ -97961,7 +98052,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0149551 xref: http://www.snomedbrowser.com/Codes/Details/369222001 xref: UMLS:C0149551 {source="BIRNLEX:1025"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -97974,7 +98064,6 @@ synonym: "neuraxis cavity" EXACT [FMA:75007] synonym: "neuraxis lumen" EXACT [] xref: BIRNLEX:1029 xref: FMA:75007 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: luminal_space_of UBERON:0001017 ! central nervous system @@ -98083,8 +98172,8 @@ xref: DMBA:16589 xref: EMAPA:37921 {source="MA:th"} xref: FMA:72405 xref: HBA:9086 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 {source="BIRNLEX:1037"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 {source="BIRNLEX:1037"} xref: http://en.wikipedia.org/wiki/Olivary_pretectal_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0175359 xref: MBA:706 @@ -98146,7 +98235,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228427 xref: http://www.snomedbrowser.com/Codes/Details/361541001 xref: UMLS:C0228427 {source="BIRNLEX:1043"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0002152 ! middle cerebellar peduncle relationship: part_of UBERON:0000988 ! pons @@ -98673,7 +98761,6 @@ xref: MBA:961 xref: Prepyriform:area xref: UMLS:C0228280 {source="BIRNLEX:1097"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0002599 {source="lexical"} ! medial olfactory gyrus relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex @@ -98739,7 +98826,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2394 {source xref: http://linkedlifedata.com/resource/umls/id/C0694580 xref: UMLS:C0694580 {source="BIRNLEX:1102"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -98982,8 +99068,6 @@ xref: MBA:982 xref: UMLS:C0152332 {source="BIRNLEX:1129"} is_a: UBERON:0000064 ! organ part is_a: UBERON:0000200 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! gyrus -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002600 {source="NIFSTD"} ! limbic lobe [Term] @@ -99093,7 +99177,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2395 xref: http://linkedlifedata.com/resource/umls/id/C0694581 xref: UMLS:C0694581 {source="BIRNLEX:1141"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -99537,6 +99620,7 @@ xref: MBA:924 xref: NCIT:C32291 xref: UMLS:C0007793 {source="ncithesaurus:Cerebral_Peduncle"} xref: UMLS:C0007793 {source="BIRNLEX:1202"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis is_a: UBERON:0016554 ! white matter of midbrain relationship: has_part UBERON:0001943 ! midbrain tegmentum @@ -99676,8 +99760,6 @@ xref: NCIT:C33811 xref: UMLS:C0262350 {source="ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus"} xref: UMLS:C0262350 {source="BIRNLEX:1216"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus [Term] @@ -101473,7 +101555,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228192 xref: http://www.snomedbrowser.com/Codes/Details/369229005 xref: Preoccipital:notch xref: UMLS:C0228192 {source="BIRNLEX:1436"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002021 ! occipital lobe @@ -102372,8 +102453,6 @@ xref: PBA:294022158 xref: UMLS:C0175196 {source="BIRNLEX:1508"} xref: UMLS:C0175196 {source="ncithesaurus:Entorhinal_Cortex"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007613 {source="BTO"} ! memory relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus relationship: part_of UBERON:0004725 {source="BTO"} ! piriform cortex @@ -102626,8 +102705,6 @@ xref: http://en.wikipedia.org/wiki/Isthmus_of_cingulate_gyrus xref: http://linkedlifedata.com/resource/umls/id/C0175192 xref: UMLS:C0175192 {source="BIRNLEX:1541"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002967 ! cingulate gyrus [Term] @@ -102900,7 +102977,6 @@ synonym: "segment of cerebellar cortex" EXACT [BIRNLEX:1571] xref: BIRNLEX:1571 xref: FMA:76924 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002129 ! cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex @@ -103540,8 +103616,8 @@ xref: BIRNLEX:1657 xref: FMA:61909 xref: FMA:71029 xref: HBA:4165 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 {source="BIRNLEX:1657"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 {source="BIRNLEX:1657"} xref: http://en.wikipedia.org/wiki/Transverse_temporal_gyrus xref: http://linkedlifedata.com/resource/umls/id/C0262198 xref: http://www.snomedbrowser.com/Codes/Details/279192003 @@ -104083,6 +104159,7 @@ xref: MBA:93 xref: TAO:0000650 xref: UMLS:C0228707 {source="BIRNLEX:1717"} xref: ZFA:0000650 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004673 ! trigeminal nerve root relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon @@ -104519,9 +104596,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279777006 xref: UMLS:C0458764 {source="BIRNLEX:2557"} xref: UMLS:C0458765 {source="BIRNLEX:2555"} xref: UMLS:C1184827 {source="BIRNLEX:2523"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0019230 {source="Wikipedia"} ! proprioception relationship: part_of UBERON:0006106 ! cochlear canal @@ -104554,7 +104629,6 @@ xref: FMA:58671 xref: http://linkedlifedata.com/resource/umls/id/C0934637 xref: UMLS:C0934637 {source="BIRNLEX:2542"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea [Term] @@ -104569,7 +104643,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0929757 xref: http://linkedlifedata.com/resource/umls/id/C0929760 xref: UMLS:C0929757 {source="BIRNLEX:2544"} xref: UMLS:C0929760 {source="BIRNLEX:2544"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001786 ! fovea centralis @@ -104605,7 +104678,6 @@ is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system is_a: UBERON:0006585 ! vestibular organ -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0003723 ! vestibular nerve relationship: extends_fibers_into UBERON:0003723 ! vestibular nerve @@ -104627,7 +104699,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1186166 xref: MA:0002778 xref: UMLS:C1186166 {source="BIRNLEX:2551"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0002824 ! vestibular ganglion relationship: part_of UBERON:0002824 ! vestibular ganglion @@ -104642,7 +104713,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1186167 xref: MA:0002779 xref: UMLS:C1186167 {source="BIRNLEX:2552"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] @@ -105491,8 +105561,10 @@ xref: MBA:839 xref: NCIT:C32475 xref: UMLS:C0152401 {source="BIRNLEX:2642"} xref: UMLS:C0926535 {source="ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011778 ! motor nucleus of vagal nerve +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0010127 ! future dorsal motor nucleus of vagus relationship: immediate_transformation_of UBERON:0010127 {evidence="definitional"} ! future dorsal motor nucleus of vagus relationship: part_of UBERON:0001896 {source="MA", source="NIF"} ! medulla oblongata @@ -105565,9 +105637,12 @@ xref: http://en.wikipedia.org/wiki/Inferior_salivatory_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0175534 xref: MBA:106 xref: UMLS:C0175534 {source="BIRNLEX:2645"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010124 ! future inferior salivatory nucleus relationship: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve relationship: immediate_transformation_of UBERON:0010124 {evidence="definitional"} ! future inferior salivatory nucleus @@ -105967,8 +106042,8 @@ synonym: "nucleus basalis lateralis amygdalae" RELATED LATIN [NeuroNames:247] xref: BAMS:BAL xref: BIRNLEX:2695 xref: FMA:68857 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 {source="BIRNLEX:2695"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 {source="BIRNLEX:2695"} xref: http://linkedlifedata.com/resource/umls/id/C0694601 xref: UMLS:C0694601 {source="BIRNLEX:2695"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter @@ -106160,7 +106235,6 @@ xref: Olfactory:cortex xref: UMLS:C0162434 {source="BIRNLEX:2707"} xref: VHOG:0000325 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe relationship: part_of UBERON:0000956 {source="VHOG"} ! cerebral cortex relationship: part_of UBERON:0005366 {source="MA"} ! olfactory lobe @@ -106182,7 +106256,6 @@ xref: EV:0100179 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2056 xref: MA:0003117 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0002894 {source="NIF"} ! olfactory cortex @@ -106533,7 +106606,6 @@ xref: Parietal:operculum xref: UMLS:C0228265 {source="BIRNLEX:4029"} xref: UMLS:C1284612 {source="BIRNLEX:4029"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -106813,7 +106885,6 @@ xref: Olfactory:trigone xref: UMLS:C0228279 {source="BIRNLEX:4042"} xref: UMLS:C0228279 {source="ncithesaurus:Trigonum_Olfactorium"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005366 {source="BTO-def"} ! olfactory lobe [Term] @@ -107414,7 +107485,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0149547 xref: http://www.snomedbrowser.com/Codes/Details/362352005 xref: UMLS:C0149547 {source="BIRNLEX:751"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -107616,6 +107686,7 @@ xref: MA:0000993 xref: MBA:1143 xref: NCIT:C49138 xref: UMLS:C1708253 {source="ncithesaurus:Granular_Layer_of_the_Cerebellum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004130 ! cerebellar layer intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: in_deep_part_of UBERON:0002129 ! cerebellar cortex @@ -108055,6 +108126,7 @@ xref: NCIT:C49139 xref: UMLS:C0228469 {source="BIRNLEX:810"} xref: UMLS:C1289474 {source="BIRNLEX:810"} xref: UMLS:C1709064 {source="ncithesaurus:Molecular_Layer_of_the_Cerebellum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004130 ! cerebellar layer intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: in_superficial_part_of UBERON:0002129 ! cerebellar cortex @@ -108177,6 +108249,7 @@ xref: NCIT:C49140 xref: UMLS:C0228469 {source="BIRNLEX:818"} xref: UMLS:C1289475 {source="BIRNLEX:818"} xref: UMLS:C1709776 {source="ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004130 ! cerebellar layer intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: immediately_deep_to UBERON:0002974 ! molecular layer of cerebellar cortex @@ -108209,8 +108282,6 @@ xref: http://en.wikipedia.org/wiki/Opercular_part_of_inferior_frontal_gyrus xref: http://linkedlifedata.com/resource/umls/id/C0262296 xref: UMLS:C0262296 {source="BIRNLEX:823"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus [Term] @@ -109195,9 +109266,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228426 xref: http://www.snomedbrowser.com/Codes/Details/362401009 xref: Pontine:tegmentum xref: UMLS:C0228426 {source="BIRNLEX:923"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0002047 ! pontine raphe nucleus relationship: has_part UBERON:0002128 ! superior olivary complex relationship: has_part UBERON:0002148 ! locus ceruleus @@ -109301,7 +109371,6 @@ xref: NCIT:C52713 xref: UMLS:C0598179 {source="ncithesaurus:Cingulate_Cortex"} xref: UMLS:C0598179 {source="BIRNLEX:934"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016542 {source="NIFSTD", source="cjm"} ! limbic cortex [Term] @@ -109745,7 +109814,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/369083001 xref: UMLS:C0228271 {source="BIRNLEX:983"} xref: Uncinate:fasciculus is_a: UBERON:0005838 {source="FMA"} ! fasciculus of brain -relationship: part_of UBERON:0003023 {source="NIFSTD"} ! pontine tegmentum [Term] id: UBERON:0003045 @@ -109893,8 +109961,6 @@ xref: ZFA:0000051 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007499 ! epithelial sac -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0007499 ! epithelial sac intersection_of: has_potential_to_develop_into UBERON:0001846 ! internal ear intersection_of: part_of UBERON:0000924 ! ectoderm @@ -109931,7 +109997,7 @@ xref: XAO:0000016 xref: ZFA:0000042 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 {inconsistent_with="ZFA", source="https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/106/"} ! anatomical junction -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0003075 ! neural plate relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate relationship: immediate_transformation_of UBERON:0009615 {source="ZFA"} ! midbrain hindbrain boundary neural plate relationship: part_of UBERON:0000955 {source="ZFA"} ! brain @@ -109957,7 +110023,6 @@ xref: TAO:0001083 xref: VHOG:0001224 xref: XAO:0000021 xref: ZFA:0001083 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000955 {source="MA"} ! brain relationship: part_of UBERON:0005281 {source="ZFA"} ! ventricular system of central nervous system @@ -109987,8 +110052,8 @@ xref: TAO:0007058 xref: VHOG:0000303 xref: ZFA:0001436 xref: ZFA:0007058 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: composed_primarily_of CL:0000125 ! glial cell relationship: in_dorsal_side_of UBERON:0001049 ! neural tube @@ -110046,7 +110111,6 @@ xref: TAO:0007017 xref: VHOG:0001201 xref: XAO:0000046 xref: ZFA:0007017 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate relationship: posterior_to UBERON:0009615 ! midbrain hindbrain boundary neural plate @@ -110068,6 +110132,7 @@ xref: XAO:0000056 xref: ZFA:0000031 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0006599 ! presumptive hypochord relationship: immediate_transformation_of UBERON:0006599 {source="Bgee:AN"} ! presumptive hypochord relationship: only_in_taxon NCBITaxon:7711 ! Chordata @@ -110097,6 +110162,7 @@ is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: has_potential_to_develop_into UBERON:0002329 ! somite intersection_of: immediate_transformation_of UBERON:0007282 ! presumptive segmental plate +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0007282 ! presumptive segmental plate relationship: has_potential_to_develop_into UBERON:0002329 ! somite relationship: immediate_transformation_of UBERON:0007282 {source="Bgee:AN"} ! presumptive segmental plate @@ -110206,6 +110272,7 @@ is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance relationship: contributes_to_morphology_of UBERON:0004341 ! primitive streak +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0007283 ! presumptive shield relationship: immediate_transformation_of UBERON:0007283 {source="Bgee:AN"} ! presumptive shield relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -110288,8 +110355,8 @@ xref: TAO:0001289 xref: VHOG:0000088 xref: XAO:0000086 xref: ZFA:0001289 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0002672 ! retinal progenitor cell relationship: part_of UBERON:0000966 ! retina @@ -110540,6 +110607,7 @@ xref: XAO:0000242 xref: ZFA:0000546 is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0009201 {source="GO"} ! nephric duct +is_a: UBERON:0012275 ! meso-epithelium property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/rfoulger relationship: develops_from UBERON:0003060 ! pronephric duct @@ -110580,7 +110648,9 @@ is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0016879 ! future central nervous system disjoint_from: UBERON:0011669 ! neural plate of carapace relationship: developmentally_induced_by UBERON:0002328 {source="Wikipedia"} ! notochord +relationship: develops_from UBERON:0004734 ! gastrula relationship: develops_from UBERON:0007284 ! presumptive neural plate +relationship: develops_from UBERON:0016880 ! future nervous system relationship: immediate_transformation_of UBERON:0007284 {source="Bgee:AN"} ! presumptive neural plate relationship: only_in_taxon NCBITaxon:7711 {source="GOTAX:0000352"} ! Chordata @@ -110625,6 +110695,7 @@ xref: ZFA:0000255 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0015212 ! lateral structure +relationship: develops_from UBERON:0000307 ! blastula relationship: develops_from UBERON:0007285 ! presumptive paraxial mesoderm relationship: existence_starts_during UBERON:0000109 ! gastrula stage relationship: immediate_transformation_of UBERON:0007285 {source="Bgee:AN"} ! presumptive paraxial mesoderm @@ -110672,7 +110743,6 @@ xref: RETIRED_EHDAA2:0000545 xref: TAO:0000022 xref: ZFA:0000022 is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: composed_primarily_of CL:0000125 ! glial cell @@ -110786,7 +110856,7 @@ xref: TAO:0001024 xref: VHOG:0000062 xref: XAO:0000319 xref: ZFA:0001024 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: has_part CL:0000011 {source="ZFA"} ! migratory trunk neural crest cell relationship: part_of UBERON:0002342 ! neural crest @@ -111074,6 +111144,7 @@ xref: TAO:0001173 xref: VSAO:0000165 xref: XAO:0000469 xref: ZFA:0001173 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin intersection_of: has_skeleton UBERON:4000168 ! dorsal fin skeleton @@ -111200,12 +111271,10 @@ xref: TAO:0000292 xref: VSAO:0000001 xref: XAO:0003028 xref: ZFA:0000292 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0013514 ! space surrounding organism property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/wdahdul -relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0003103 @@ -111274,7 +111343,6 @@ synonym: "aorta-gonads-mesonephros region" RELATED [XAO:0003051] synonym: "DLP" EXACT [XAO:0003051] xref: AAO:0011008 xref: XAO:0003051 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0002390 {source="XAO"} ! hematopoietic system @@ -111341,9 +111409,7 @@ xref: AAO:0000596 xref: TAO:0000444 xref: XAO:0003086 xref: ZFA:0000444 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium [Term] @@ -111370,7 +111436,6 @@ xref: AAO:0010208 xref: TAO:0000189 xref: XAO:0003175 xref: ZFA:0000189 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -111383,7 +111448,6 @@ xref: AAO:0010207 xref: TAO:0000290 xref: XAO:0003174 xref: ZFA:0000290 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -111400,7 +111464,6 @@ xref: NCIT:C98765 xref: TAO:0000351 xref: XAO:0003172 xref: ZFA:0000351 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -111427,7 +111490,6 @@ xref: VHOG:0001665 xref: XAO:0003169 xref: ZFA:0000863 is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system -relationship: never_in_taxon NCBITaxon:7777 {source="ISBN:0073040584"} ! Chondrichthyes relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0010323 {source="ZFA"} ! cranial skeletal system relationship: part_of UBERON:0010364 ! dermal skeleton @@ -111746,7 +111808,7 @@ xref: NCIT:C34124 xref: UMLS:C0008503 {source="ncithesaurus:Chorion"} xref: UMLS:C1516505 {source="ncithesaurus:Chorionic_Sac"} xref: VHOG:0000200 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005631 ! extraembryonic membrane relationship: adjacent_to UBERON:0000922 ! embryo relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold @@ -111771,7 +111833,6 @@ xref: MESH:A16.631.886 xref: VHOG:0000720 xref: Vitelline:membrane xref: XAO:0000030 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005764 ! acellular membrane relationship: bounding_layer_of CL:0000025 ! egg cell relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -111811,6 +111872,7 @@ xref: UMLS:C0040578 {source="ncithesaurus:Trachea"} xref: Vertebrate:trachea xref: VHOG:0000371 xref: XAO:0000118 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000117 ! respiratory tube relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium @@ -111825,7 +111887,6 @@ def: "A respiratory airway that is part of an open tracheal system." [http://orc subset: uberon_slim synonym: "invertebrate trachea" EXACT [] synonym: "trachea" BROAD SENSU [FBbt:00005043] -xref: FBbt:00005043 xref: Invertebrate:trachea xref: SPD:0000434 xref: TADS:0000315 @@ -112529,7 +112590,6 @@ id: UBERON:0003194 name: imaginal disc-derived wing vein xref: FBbt:00004751 xref: HAO:0001095 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -112654,7 +112714,6 @@ name: blood nerve barrier def: "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, http://en.wikipedia.org/wiki/Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] xref: Blood-nerve:barrier -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0001021 ! nerve @@ -112668,7 +112727,6 @@ def: "Barrier in the choroid plexus located in the lateral, third, and fourth br subset: pheno_slim synonym: "blood-CSF barrier" EXACT [MP:0006088] is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0000178 ! blood relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid relationship: only_in_taxon NCBITaxon:7711 ! Chordata @@ -112726,7 +112784,6 @@ xref: EMAPA:36566 xref: FMA:73285 xref: MA:0002760 is_a: UBERON:0003215 ! alveolus -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0001911 ! mammary gland relationship: contributes_to_morphology_of UBERON:0001912 ! lobule of mammary gland @@ -112768,7 +112825,6 @@ xref: MESH:D021362 xref: MIAA:0000161 xref: NCIT:C12230 xref: UMLS:C0226901 {source="ncithesaurus:Hard_Palate"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: part_of UBERON:0001716 {notes="check this", source="EMAPA"} ! secondary palate @@ -112818,8 +112874,6 @@ xref: MA:0000860 xref: UMLS:C0447640 {source="BIRNLEX:941"} xref: VHOG:0001180 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0006250 {source="MP-def"} ! infundibular recess of 3rd ventricle relationship: part_of UBERON:0002198 ! neurohypophysis @@ -112827,7 +112881,6 @@ relationship: part_of UBERON:0002198 ! neurohypophysis id: UBERON:0003218 name: ovary septum def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0000992 ! ovary @@ -112927,6 +112980,7 @@ name: chorion syncytiotrophoblast def: "An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion." [OBOL:automatic] xref: EHDAA2:0001973 xref: EHDAA:156 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000371 ! syncytiotrophoblast @@ -113016,7 +113070,8 @@ xref: EHDAA:5155 xref: EHDAA:6180 xref: EMAPA:17491 xref: VHOG:0000779 -is_a: UBERON:0010371 ! ecto-epithelium +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001464 ! hip relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm @@ -113034,7 +113089,8 @@ xref: EHDAA:5161 xref: EHDAA:6186 xref: EMAPA:17494 xref: VHOG:0000810 -is_a: UBERON:0010371 ! ecto-epithelium +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001465 ! knee relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm @@ -113200,6 +113256,7 @@ xref: FMA:75604 xref: MA:0001204 xref: RETIRED_EHDAA2:0002155 xref: VHOG:0000634 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth @@ -113235,6 +113292,7 @@ xref: FMA:75605 xref: MA:0001202 xref: RETIRED_EHDAA2:0001771 xref: VHOG:0000633 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006932 ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth @@ -113361,7 +113419,6 @@ xref: EMAPA:16197 xref: VHOG:0000636 xref: ZFA:0007068 is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003069 ! otic placode @@ -113411,7 +113468,6 @@ xref: galen:RibCage xref: http://en.wikipedia.org/wiki/Human_rib_cage xref: http://www.snomedbrowser.com/Codes/Details/361741004 xref: Rib:cage -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: contributes_to_morphology_of UBERON:0005944 ! axial skeleton plus cranial skeleton relationship: part_of UBERON:0000915 {notes="check other species", source="FMA"} ! thoracic segment of trunk @@ -113449,10 +113505,10 @@ xref: EHDAA2:0000117 xref: EHDAA:138 xref: EMAPA:16110 xref: VHOG:0000621 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue -is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0002532 {source="EHDAA2-via-amnioblasts", source="ISBN:9780878932504"} ! epiblast (generic) relationship: part_of UBERON:0000305 {source="EHDAA2"} ! amnion @@ -113633,7 +113689,6 @@ xref: NCIT:C49792 xref: UMLS:C1710581 {source="ncithesaurus:Upper_Jaw_Tooth"} is_a: CARO:0000003 is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001709 ! upper jaw region @@ -113663,7 +113718,6 @@ xref: NCIT:C49582 xref: UMLS:C1708757 {source="ncithesaurus:Lower_Jaw_Tooth"} is_a: CARO:0000003 is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001710 ! lower jaw region @@ -113684,7 +113738,6 @@ xref: EHDAA2:0000486 xref: EHDAA:2923 xref: EMAPA:17844 is_a: UBERON:0001134 ! skeletal muscle tissue -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000019 ! camera-type eye @@ -113755,7 +113808,6 @@ xref: MA:0001908 xref: VHOG:0000429 xref: XAO:0003087 is_a: CARO:0000003 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0001709 ! upper jaw region @@ -113823,7 +113875,6 @@ synonym: "primary bronchus endothelium" EXACT [OBOL:automatic] synonym: "principal bronchus endothelium" EXACT [OBOL:automatic] xref: EHDAA:3076 xref: RETIRED_EHDAA2:0001046 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0002340 ! epithelium of main bronchus intersection_of: UBERON:0001986 ! endothelium @@ -113919,6 +113970,7 @@ synonym: "foregut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0000560 xref: EHDAA:3830 xref: EMAPA:17178 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0002114 ! duodenum @@ -113930,6 +113982,7 @@ synonym: "midgut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0001189 xref: EHDAA:3937 xref: EMAPA:17193 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001045 ! midgut relationship: part_of UBERON:0002114 ! duodenum @@ -114015,6 +114068,9 @@ xref: VHOG:0000011 is_a: UBERON:0003547 ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0002028 ! hindbrain +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0000955 ! brain +relationship: develops_from UBERON:0002028 ! hindbrain relationship: develops_from UBERON:0010091 ! future hindbrain meninx relationship: immediate_transformation_of UBERON:0010091 {evidence="definitional"} ! future hindbrain meninx relationship: part_of UBERON:0002028 ! hindbrain @@ -114088,7 +114144,6 @@ xref: EHDAA:4475 xref: EMAPA:16897 xref: VHOG:0000653 is_a: UBERON:0002530 ! gland -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001894 ! diencephalon @@ -114132,7 +114187,6 @@ xref: RETIRED_EHDAA2:0001111 xref: TAO:0000355 xref: VHOG:0000772 xref: ZFA:0000355 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001891 ! midbrain @@ -114154,9 +114208,7 @@ xref: EHDAA2:0001994 xref: EHDAA:3512 xref: EMAPA:16657 xref: VHOG:0000774 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003054 ! roof plate @@ -114194,7 +114246,6 @@ xref: EMAPA:16909 xref: TAO:0001358 xref: VHOG:0000771 xref: ZFA:0001358 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001894 ! diencephalon @@ -114220,9 +114271,7 @@ xref: EHDAA:5524 xref: EMAPA:16483 xref: EMAPA:16487 xref: VHOG:0000770 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003054 ! roof plate @@ -114253,9 +114302,7 @@ synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0001099 xref: EHDAA:7614 xref: VHOG:0000776 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003054 ! roof plate @@ -114302,8 +114349,6 @@ xref: TAO:0001434 xref: VHOG:0000300 xref: ZFA:0001434 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001049 ! neural tube intersection_of: part_of UBERON:0003079 ! floor plate @@ -114358,7 +114403,6 @@ xref: VHOG:0000783 xref: ZFA:0000914 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003306 ! floor plate of neural tube -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -114425,7 +114469,6 @@ xref: EMAPA:17258 xref: VHOG:0000784 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003306 ! floor plate of neural tube -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -114459,7 +114502,6 @@ xref: EMAPA:17551 xref: VHOG:0000786 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003306 ! floor plate of neural tube -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003079 ! floor plate @@ -114644,8 +114686,8 @@ xref: EHDAA2:0002124 xref: EHDAA:8031 xref: EMAPA:17929 xref: VHOG:0001099 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034995 ! jaw mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001709 ! upper jaw region @@ -114692,7 +114734,6 @@ xref: EHDAA:8981 xref: EMAPA:17591 xref: VHOG:0000747 is_a: UBERON:0005253 ! head mesenchyme -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001757 ! pinna relationship: part_of UBERON:0001757 ! pinna @@ -114714,7 +114755,6 @@ xref: EHDAA:6528 xref: EMAPA:17761 xref: VHOG:0001087 is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -114768,7 +114808,6 @@ xref: EMAPA:27535 xref: FMA:85399 xref: http://www.snomedbrowser.com/Codes/Details/7892006 is_a: UBERON:0001208 ! submucosa of large intestine -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal @@ -114937,7 +114976,6 @@ xref: EHDAA2:0000227 xref: EMAPA:16658 xref: FMA:83843 is_a: UBERON:0000045 ! ganglion -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001017 ! central nervous system @@ -114997,7 +115035,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362170004 xref: NCIT:C60784 xref: UMLS:C0227414 {source="ncithesaurus:Anal_Mucosa"} is_a: UBERON:0001207 ! mucosa of large intestine -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal @@ -115171,8 +115208,7 @@ synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic] synonym: "incisor tooth epithelium" EXACT [OBOL:automatic] xref: EMAPA:32890 xref: MA:0003223 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001098 ! incisor tooth relationship: part_of UBERON:0001098 ! incisor tooth @@ -115185,7 +115221,6 @@ synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal septum epithelium" EXACT [OBOL:automatic] xref: EMAPA:18442 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0019306 ! nose epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001706 ! nasal septum @@ -115226,8 +115261,6 @@ synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic] synonym: "soft palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18950 is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0001733 ! soft palate @@ -115382,8 +115415,7 @@ xref: EMAPA:18444 xref: FMA:301283 xref: MA:0001328 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium -is_a: UBERON:0005911 ! endo-epithelium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0019306 ! nose epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002255 ! vomeronasal organ @@ -115399,8 +115431,6 @@ synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic] synonym: "hard palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18953 is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -115434,9 +115464,9 @@ synonym: "pelvic fin bud ectoderm" NARROW SENSU [] xref: EHDAA2:0001034 xref: EMAPA:16780 xref: VHOG:0001048 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000490 ! unilaminar epithelium intersection_of: bounding_layer_of UBERON:0005420 ! pelvic appendage bud relationship: bounding_layer_of UBERON:0005420 ! pelvic appendage bud @@ -115489,6 +115519,7 @@ synonym: "chorion epithelium" RELATED [] synonym: "chorionic epithelium" RELATED [BTO:0005145] xref: BTO:0005145 xref: EMAPA:16113 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000924 ! ectoderm @@ -115894,7 +115925,6 @@ xref: FMA:59503 xref: MA:0003138 is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003932 ! cartilage element of chondrocranium -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0001706 ! nasal septum relationship: part_of UBERON:0001706 ! nasal septum @@ -115910,7 +115940,6 @@ synonym: "gut gland" EXACT [MA:0003202] synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic] xref: EMAPA:18815 xref: MA:0003202 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 ! gland is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0002530 ! gland @@ -115940,7 +115969,6 @@ synonym: "oral part of pharynx gland" EXACT [OBOL:automatic] synonym: "oropharynx gland" EXACT [OBOL:automatic] xref: EMAPA:25095 is_a: UBERON:0003295 ! pharyngeal gland -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0001729 ! oropharynx @@ -116012,7 +116040,6 @@ synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17912 is_a: UBERON:0003324 ! mesenchyme of lower jaw is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001684 ! mandible @@ -116025,7 +116052,6 @@ synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18443 xref: FMA:312700 is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001706 ! nasal septum relationship: part_of UBERON:0001706 ! nasal septum @@ -116037,7 +116063,6 @@ def: "Mesenchyme that is part of a developing tongue [Automatically generated de synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] xref: EHDAA2:0004614 xref: EMAPA:17882 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001723 ! tongue @@ -116050,7 +116075,6 @@ def: "Mesenchyme that is part of a developing soft palate [Automatically generat synonym: "soft palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18951 is_a: UBERON:0003323 ! mesenchyme of upper jaw -is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0001733 ! soft palate @@ -116094,7 +116118,6 @@ synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic] synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18811 xref: VHOG:0001106 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001832 ! sublingual gland @@ -116128,7 +116151,6 @@ xref: EMAPA:35925 xref: http://www.snomedbrowser.com/Codes/Details/368069009 xref: Wharton's:jelly is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002331 ! umbilical cord @@ -116142,7 +116164,6 @@ def: "Mesenchyme that is part of a developing hard palate [Automatically generat synonym: "hard palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18954 is_a: UBERON:0003323 ! mesenchyme of upper jaw -is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -116998,7 +117019,6 @@ xref: MA:0001917 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001834 ! upper lip relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery @@ -117023,7 +117043,6 @@ xref: MA:0001916 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001835 ! lower lip relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery @@ -117233,7 +117252,6 @@ xref: MA:0002673 xref: MESH:A06.407.850 xref: NCIT:C38515 xref: UMLS:C1515429 {source="ncithesaurus:Thymic_Lymphoid_Tissue"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001744 ! lymphoid tissue intersection_of: UBERON:0001744 ! lymphoid tissue intersection_of: part_of UBERON:0002370 ! thymus @@ -117266,7 +117284,6 @@ synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic] xref: EMAPA:37793 {source="MA:th"} xref: MA:0001732 is_a: UBERON:0001821 ! sebaceous gland -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0000996 ! vagina @@ -117396,7 +117413,6 @@ synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic] xref: EMAPA:37811 {source="MA:th"} xref: MA:0001834 is_a: UBERON:0003490 ! respiratory system reticular lamina -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001967 ! reticular lamina of epithelium intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -117418,8 +117434,6 @@ synonym: "windpipe reticular lamina" EXACT [OBOL:automatic] xref: EMAPA:37554 {source="MA:th"} xref: MA:0001856 is_a: UBERON:0003490 ! respiratory system reticular lamina -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001967 ! reticular lamina of epithelium intersection_of: part_of UBERON:0003126 ! trachea relationship: part_of UBERON:0003126 ! trachea @@ -117520,7 +117534,6 @@ synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36611 xref: MA:0001241 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0000964 ! cornea @@ -117600,7 +117613,6 @@ def: "A blood vessel that is part of a trachea." [OBOL:automatic] synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: EMAPA:35874 xref: MA:0001852 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003126 ! trachea @@ -117684,7 +117696,6 @@ synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37388 {source="MA:th"} xref: MA:0001250 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001711 ! eyelid relationship: part_of UBERON:0001711 ! eyelid @@ -117714,7 +117725,6 @@ synonym: "blood vessel of lung" EXACT [OBOL:automatic] synonym: "pulmonary vascular element" RELATED [EMAPA:32867] xref: EMAPA:32867 xref: MA:0002457 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel @@ -117815,7 +117825,6 @@ synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] synonym: "principal bronchus vascular element" RELATED [EMAPA:16852] xref: EMAPA:16852 xref: MA:0001844 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002182 ! main bronchus @@ -118322,7 +118331,6 @@ name: distal convoluted tubule macula densa def: "A macula densa that is part of a distal convoluted tubule [Automatically generated definition]." [OBOL:automatic] xref: MA:0001668 is_a: UBERON:0002335 ! macula densa -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0001292 ! distal convoluted tubule relationship: part_of UBERON:0001292 {source="MA"} ! distal convoluted tubule @@ -118990,7 +118998,6 @@ synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:37548 {source="MA:th"} xref: MA:0002409 is_a: UBERON:0003570 ! respiratory system connective tissue -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0001558 ! lower respiratory tract @@ -119039,7 +119046,6 @@ synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic] xref: EMAPA:37682 {source="MA:th"} xref: MA:0001864 is_a: UBERON:0003570 ! respiratory system connective tissue -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -119060,7 +119066,6 @@ xref: MA:0001754 xref: NCIT:C49245 xref: UMLS:C1708651 {source="ncithesaurus:Laryngeal_Connective_Tissue"} is_a: UBERON:0003570 ! respiratory system connective tissue -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -119084,8 +119089,8 @@ xref: EMAPA:35537 xref: FMA:74479 xref: FMA:74483 xref: MA:0002897 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001911 ! mammary gland relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland @@ -119206,6 +119211,7 @@ synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EMAPA:37550 {source="MA:th"} xref: MA:0001845 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003592 ! bronchus connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002182 ! main bronchus @@ -119407,7 +119413,6 @@ synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic] synonym: "textus connectivus of tail" EXACT [OBOL:automatic] xref: EMAPA:16749 xref: MA:0000697 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0007812 ! post-anal tail @@ -119438,7 +119443,6 @@ xref: MA:0001819 xref: NCIT:C49256 xref: UMLS:C1708759 {source="ncithesaurus:Lower_Respiratory_Tract_Cartilage"} is_a: UBERON:0003406 ! cartilage of respiratory system -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0001558 ! lower respiratory tract @@ -119607,7 +119611,6 @@ synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic] xref: MA:0002858 is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0003837 ! thoracic segment connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart @@ -119676,7 +119679,6 @@ synonym: "vascular elastic tissue" EXACT [MP:0006083] xref: EMAPA:36300 xref: MA:0002856 is_a: UBERON:0003613 ! cardiovascular system elastic tissue -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001981 ! blood vessel @@ -120963,7 +120965,6 @@ xref: FMA:321558 xref: galen:LimbJoint xref: http://www.snomedbrowser.com/Codes/Details/312683002 xref: MA:0000691 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002101 ! limb @@ -121345,7 +121346,6 @@ intersection_of: has_quality PATO:0005021 ! unicuspidate disjoint_from: UBERON:0007120 ! premolar tooth relationship: has_part UBERON:0006844 {count="1", editor_note="cardinality not allowed with transitivity in OWL"} ! cusp of tooth relationship: has_quality PATO:0005021 ! unicuspidate -relationship: never_in_taxon NCBITaxon:337687 {notes="Although there are a few exceptions, the dental formula for the great majority of cricetids is 1.0.0.3", source="http://en.wikipedia.org/wiki/Cricetidae"} ! Muroidea relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia [Term] @@ -121365,8 +121365,6 @@ xref: MESH:A14.254.900.710 xref: NCIT:C32375 xref: UMLS:C0226993 {source="ncithesaurus:Corona_Dentis"} is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001091 ! calcareous tooth [Term] @@ -121406,8 +121404,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245728004 xref: MESH:A14.254.900.750 is_a: CARO:0000003 is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: attaches_to UBERON:0001091 ! calcareous tooth relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001091 ! calcareous tooth @@ -121422,7 +121418,6 @@ synonym: "tooth apice" RELATED [GAID:1281] xref: FMA:63000 xref: GAID:1281 xref: MESH:A14.254.900.750.700 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000015 ! non-material anatomical boundary relationship: part_of UBERON:0001091 ! calcareous tooth @@ -121508,7 +121503,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/73711005 xref: MESH:D010156 xref: NCIT:C33247 xref: UMLS:C0030213 {source="ncithesaurus:Palatal_Muscle"} -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010959 ! craniocervical muscle is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -121555,7 +121549,6 @@ xref: MESH:A01.047.025 xref: NCIT:C12664 xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA xref: UMLS:C0230168 {source="ncithesaurus:Abdominal_Cavity"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000916 ! abdomen @@ -121609,7 +121602,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/288323008 xref: MESH:D020390 xref: NCIT:C94543 xref: UMLS:C0227130 {source="ncithesaurus:Tooth_Socket"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0004103 {source="MESH-modified"} ! alveolar ridge @@ -121653,7 +121645,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362710002 xref: MESH:A01.047.025.600.573 xref: NCIT:C33209 xref: UMLS:C0028977 {source="ncithesaurus:Omentum"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001178 ! visceral peritoneum @@ -121675,7 +121666,6 @@ xref: NCIT:C12497 xref: Sella:turcica xref: UMLS:C0036609 {source="ncithesaurus:Sella_Turcica"} is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0009639 {source="FMA"} ! body of sphenoid [Term] @@ -121777,7 +121767,6 @@ xref: MESH:A01.047.025.750 xref: NCIT:C12298 xref: Retroperitoneal:space xref: UMLS:C0035359 {source="ncithesaurus:Retroperitoneum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003684 ! abdominal cavity @@ -121802,7 +121791,6 @@ xref: MESH:D001268 xref: NCIT:C32157 xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA xref: UMLS:C0004168 {source="ncithesaurus:Atlanto-axial_Joint"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0001092 ! vertebral bone 1 @@ -121953,7 +121941,6 @@ xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA xref: Pubic:symphysis xref: UMLS:C0034015 {source="ncithesaurus:Pubic_Symphisis"} is_a: UBERON:0002216 {source="FMA"} ! symphysis -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008114 ! joint of girdle relationship: connects UBERON:0011090 ! skeleton of right pelvic girdle relationship: connects UBERON:0011091 ! skeleton of left pelvic girdle @@ -121988,7 +121975,7 @@ xref: MESH:D013704 xref: NCIT:C32888 xref: Temporomandibular:joint xref: UMLS:C0039493 {source="ncithesaurus:Jaw_Joint"} -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011171 ! joint connecting upper and lower jaws is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000982 ! skeletal joint @@ -122134,7 +122121,6 @@ xref: MESH:D014827 xref: NCIT:C12822 xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA xref: UMLS:C0042930 {source="ncithesaurus:Vocal_Cord"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034681 ! vocal organ relationship: capable_of_part_of GO:0071625 ! vocalization behavior relationship: in_lateral_side_of UBERON:0002486 {source="FMA-abduced-lr"} ! glottis @@ -122165,8 +122151,6 @@ xref: MESH:D012850 xref: NCIT:C33557 xref: UMLS:C0503361 {source="ncithesaurus:Sinus_of_Valsava"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0010172 ! bulb of aorta relationship: part_of UBERON:0010172 {source="FMA", source="MP"} ! bulb of aorta @@ -122205,7 +122189,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362047009 xref: MESH:D002941 xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest [Term] id: UBERON:0003710 @@ -122365,6 +122348,7 @@ xref: http://en.wikipedia.org/wiki/Recurrent_laryngeal_nerve xref: http://www.snomedbrowser.com/Codes/Details/24227007 xref: MESH:D012009 xref: VHOG:0001347 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: branching_part_of UBERON:0001759 ! vagus nerve @@ -122388,7 +122372,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/12945004 xref: MESH:A08.800.550.700.500.500 xref: NCIT:C13824 xref: UMLS:C0027871 {source="ncithesaurus:Muscle_Spindle"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system @@ -122563,8 +122546,6 @@ xref: MESH:D002572 xref: OpenCyc:Mx4rvkEE3JwpEbGdrcN5Y29ycA is_a: CARO:0001001 is_a: UBERON:0001813 ! spinal nerve plexus -intersection_of: UBERON:0001813 ! spinal nerve plexus -intersection_of: innervates UBERON:0007811 ! craniocervical region relationship: innervates UBERON:0007811 ! craniocervical region [Term] @@ -122628,7 +122609,6 @@ xref: MESH:A01.911.800.500 xref: NCIT:C12748 xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA xref: UMLS:C0025066 {source="ncithesaurus:Mediastinum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002224 ! thoracic cavity relationship: surrounded_by UBERON:0035431 {source="FMA"} ! mediastinal pleura @@ -122661,7 +122641,6 @@ xref: MESH:D009061 xref: NCIT:C77637 xref: Oral:mucosa xref: UMLS:C0026639 {source="ncithesaurus:Oral_Mucosa"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000165 ! mouth @@ -122898,7 +122877,6 @@ def: "Any muscle tissue that is part of the urethra." [UBERON:cjm] synonym: "urethral muscle layer" RELATED [MA:0002649] xref: EMAPA:37787 {source="MA:th"} xref: MA:0002649 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0005090 ! muscle structure intersection_of: part_of UBERON:0000057 ! urethra @@ -123153,7 +123131,6 @@ xref: EHDAA:914 xref: EMAPA:16167 xref: VHOG:0001119 xref: XAO:0000252 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001049 ! neural tube @@ -123181,8 +123158,8 @@ xref: UMLS:C1709309 {source="ncithesaurus:Odontogenic_Epithelial_Remnants"} xref: VHOG:0001443 xref: XAO:0003203 xref: ZFA:0005134 +is_a: UBERON:0000483 ! epithelium is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005176 ! tooth enamel organ relationship: develops_from UBERON:0004362 {notes="epithelium", source="JB"} ! pharyngeal arch 1 @@ -123250,9 +123227,8 @@ xref: NCIT:C45713 xref: UMLS:C1711423 {source="ncithesaurus:Thymic_Epithelial_Tissue"} xref: VHOG:0001426 xref: ZFA:0005779 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure -is_a: UBERON:0005911 ! endo-epithelium -is_a: UBERON:0012275 ! meso-epithelium +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002370 ! thymus relationship: contributes_to_morphology_of UBERON:0002370 ! thymus @@ -123419,7 +123395,6 @@ xref: EHDAA:5012 xref: EMAPA:16858 xref: EMAPA:17385 xref: VHOG:0001090 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003104 ! mesenchyme @@ -123790,7 +123765,6 @@ xref: EMAPA:32772 xref: FMA:74041 xref: MA:0002428 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0007688 ! anlage relationship: contributes_to_morphology_of UBERON:0001954 ! Ammon's horn relationship: part_of UBERON:0002421 ! hippocampal formation @@ -124045,6 +124019,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362843009 xref: NCIT:C34165 xref: UMLS:C1517055 {source="ncithesaurus:Extraembryonic_Coelom"} xref: VHOG:0001671 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012466 ! extraembryonic cavity relationship: develops_from UBERON:0003886 ! future coelemic cavity lumen relationship: part_of UBERON:0016887 ! entire extraembryonic component @@ -124312,12 +124287,16 @@ xref: UMLS:C1518263 {source="ncithesaurus:Neural_Retina"} xref: VHOG:0000535 xref: XAO:0003216 xref: ZFA:0000046 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0001781 ! layer of retina intersection_of: UBERON:0001781 ! layer of retina intersection_of: immediate_transformation_of UBERON:0005425 ! presumptive neural retina relationship: developmentally_induced_by UBERON:0005426 ! lens vesicle +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0003072 ! optic cup relationship: develops_from UBERON:0005425 ! presumptive neural retina +relationship: develops_from UBERON:0010312 ! immature eye relationship: has_part CL:0000210 ! photoreceptor cell relationship: has_part CL:0000540 ! neuron relationship: immediate_transformation_of UBERON:0005425 {source="Bgee:AN"} ! presumptive neural retina @@ -124346,7 +124325,6 @@ def: "Follicle containing part of bursa of Fabricius. The luminal (interior) sur synonym: "bursal fold" EXACT [] synonym: "bursal plicae" EXACT PLURAL [] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003903 ! bursa of Fabricius [Term] @@ -124354,7 +124332,6 @@ id: UBERON:0003905 name: bursal follicle def: "Follicle within the plicae of bursa of Fabricius." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003904 ! bursal plica [Term] @@ -124389,7 +124366,6 @@ xref: VHOG:0000936 xref: XAO:0004120 xref: ZFA:0001318 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: adjacent_to UBERON:0002165 ! endocardium relationship: adjacent_to UBERON:0002349 ! myocardium relationship: part_of UBERON:0000948 ! heart @@ -124454,9 +124430,6 @@ is_a: UBERON:0003909 ! sinusoid intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0001250 ! red pulp of spleen relationship: connected_to UBERON:0010400 {subset="human_reference_atlas"} ! spleen trabecular vein -relationship: never_in_taxon NCBITaxon:10088 {source="http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml"} ! Mus -relationship: never_in_taxon NCBITaxon:9681 {source="http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml"} ! Felidae -relationship: never_in_taxon NCBITaxon:9822 {source="http://www.informatics.jax.org/greenbook/chapters/chapter13.shtml"} ! Sus relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001250 ! red pulp of spleen @@ -124776,7 +124749,6 @@ xref: TAO:0005123 xref: UMLS:C0836205 {source="ncithesaurus:Gut_Epithelium"} xref: XAO:0003200 xref: ZFA:0005123 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001555 ! digestive tract @@ -124859,7 +124831,6 @@ synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic] xref: EFO:0003604 xref: TAO:0001000 xref: ZFA:0001000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000151 ! pectoral fin @@ -124874,7 +124845,6 @@ synonym: "mesenchyme pelvic fins" RELATED PLURAL [ZFA:0001449] synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic] xref: TAO:0001449 xref: ZFA:0001449 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000152 ! pelvic fin @@ -124919,9 +124889,7 @@ id: UBERON:0003938 name: sensory dissociation area def: "The area of the parietal lobe that integrates tactile and visual stimuli." [MP:0000796] subset: pheno_slim -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe @@ -125014,7 +124982,6 @@ name: somatic motor system def: "The neural tissue involved in the transmission of motor signals." [MP:0001051] subset: pheno_slim xref: EMAPA:37953 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000012 ! somatic nervous system @@ -125026,10 +124993,8 @@ subset: pheno_slim synonym: "labyrinthine layer" EXACT [GO:0060713] synonym: "labyrinthine layer of placenta" EXACT [GO:0060713] synonym: "placental labyrinth" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: contributes_to_morphology_of UBERON:0001987 ! placenta -relationship: never_in_taxon NCBITaxon:9606 {source="http://placentation.ucsd.edu"} ! Homo sapiens relationship: part_of UBERON:0001987 ! placenta [Term] @@ -125051,7 +125016,6 @@ def: "The membrane between the capillary blood and alveolar air, comprised of th subset: pheno_slim xref: MESH:D015824 is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004119 ! endoderm-derived structure relationship: adjacent_to UBERON:0000178 ! blood relationship: part_of UBERON:0002048 ! lung @@ -125076,7 +125040,6 @@ name: inner ear canal def: "The tubular ducts of the inner ear." [MP:0002729] subset: pheno_slim xref: EMAPA:37882 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0001846 ! internal ear @@ -125101,7 +125064,6 @@ xref: NCIT:C13378 xref: RETIRED_EHDAA2:0000583 xref: UMLS:C0740422 {source="ncithesaurus:Fundus"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0001802 ! posterior segment of eyeball @@ -125114,7 +125076,6 @@ synonym: "anterior stroma" BROAD [MP:0003093] synonym: "cornea anterior stroma" EXACT [MP:0003093] xref: EMAPA:37414 {source="MA:th"} is_a: UBERON:0003566 ! head connective tissue -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: in_anterior_side_of UBERON:0001777 ! substantia propria of cornea disjoint_from: UBERON:0003953 {source="lexical"} ! posterior stroma of cornea @@ -125131,7 +125092,6 @@ synonym: "cornea posterior stroma" EXACT [MP:0003094] synonym: "posterior stroma" BROAD [MP:0003094] xref: EMAPA:37415 {source="MA:th"} is_a: UBERON:0003566 ! head connective tissue -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: in_posterior_side_of UBERON:0001777 ! substantia propria of cornea relationship: contributes_to_morphology_of UBERON:0001777 ! substantia propria of cornea @@ -125186,7 +125146,6 @@ def: "The structures associated with drainage of the aqueous humor from the eye, subset: pheno_slim xref: EMAPA:37427 {source="MA:th"} is_a: UBERON:0000467 ! anatomical system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001768 ! uvea [Term] @@ -125210,7 +125169,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/280652000 xref: MESH:D016570 xref: ZFA:0005562 is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: adjacent_to UBERON:0001782 ! pigmented layer of retina property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/gkoutos @@ -125270,7 +125228,6 @@ xref: EMAPA:36320 xref: FMA:52877 xref: http://en.wikipedia.org/wiki/Temporal_styloid_process xref: http://www.snomedbrowser.com/Codes/Details/138874009 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone @@ -125321,6 +125278,11 @@ xref: FMA:6965 xref: http://www.snomedbrowser.com/Codes/Details/280364004 xref: Pterygopalatine:ganglion is_a: UBERON:0001808 ! parasympathetic ganglion +relationship: develops_from RO:0002577 ! system +relationship: develops_from UBERON:0000010 ! peripheral nervous system +relationship: develops_from UBERON:0000011 ! parasympathetic nervous system +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0002410 ! autonomic nervous system relationship: develops_from UBERON:0010128 ! future pterygopalatine ganglion relationship: immediate_transformation_of UBERON:0010128 {evidence="definitional"} ! future pterygopalatine ganglion @@ -125384,9 +125346,7 @@ def: "Investing bone that lies on the surface of the malleus." [MP:0008380] subset: pheno_slim synonym: "gonium" EXACT [MP:0008380] xref: EMAPA:37874 {source="MA:th"} -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001686 ! auditory ossicle bone relationship: part_of UBERON:0001689 ! malleus bone @@ -125399,7 +125359,6 @@ synonym: "cutaneous elastic fiber" NARROW [MP:0008418] synonym: "dermal elastic fiber" NARROW [MP:0008418] xref: EMAPA:37841 {source="MA:th"} is_a: UBERON:0002521 ! elastic tissue -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000014 ! zone of skin relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin @@ -125423,7 +125382,6 @@ subset: pheno_slim synonym: "placental labyrinth vascular network" EXACT [] synonym: "placental vasculature" RELATED [OBOL:automatic] synonym: "vasculature of placenta labyrinth" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0003946 ! placenta labyrinth @@ -125442,7 +125400,6 @@ id: UBERON:0003972 name: placenta junctional zone def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth." [MP:0008957] subset: pheno_slim -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001987 ! placenta @@ -125518,8 +125475,6 @@ xref: EMAPA:37982 {source="MA:th"} xref: FMA:77825 xref: http://www.snomedbrowser.com/Codes/Details/279829002 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0001854 ! saccule of membranous labyrinth relationship: connects UBERON:0001860 ! endolymphatic duct relationship: part_of UBERON:0011774 ! utriculosaccular duct @@ -125535,8 +125490,6 @@ xref: EMAPA:37981 {source="MA:th"} xref: FMA:77824 xref: http://www.snomedbrowser.com/Codes/Details/279819009 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0001853 ! utricle of membranous labyrinth relationship: connects UBERON:0001860 ! endolymphatic duct relationship: part_of UBERON:0011774 ! utriculosaccular duct @@ -125561,8 +125514,6 @@ name: utricle valve def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals." [MP:0009261] subset: pheno_slim is_a: UBERON:0003978 ! valve -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001853 ! utricle of membranous labyrinth relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth @@ -125693,7 +125644,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/34223001 xref: MA:0000772 xref: NCIT:C13170 xref: UMLS:C0229950 {source="ncithesaurus:Hassall_s_Corpuscle"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0034922 ! cell cluster relationship: composed_primarily_of CL:0000066 ! epithelial cell relationship: contributes_to_morphology_of UBERON:0002124 ! medulla of thymus @@ -125715,7 +125665,7 @@ synonym: "thymus cortico-medullary boundary" EXACT [MP:0009543] synonym: "thymus corticomedullary junction" EXACT [MP:0009543] synonym: "thymus corticomedullary zone" EXACT [MP:0009543] xref: EMAPA:37974 {source="MA:th"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: contributes_to_morphology_of UBERON:0002125 ! thymus lobule relationship: has_part CL:0000451 ! dendritic cell @@ -125827,8 +125777,6 @@ xref: MBA:124 xref: NCIT:C32627 xref: UMLS:C0016520 {source="ncithesaurus:Foramen_of_Monroe"} is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0013152 ! interventricular foramen of heart relationship: channel_for UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0005281 ! ventricular system of central nervous system @@ -125854,7 +125802,6 @@ synonym: "fossa subarcuata" EXACT LATIN [FMA:56418, FMA:TA] xref: EMAPA:37967 {source="MA:th"} xref: FMA:56418 xref: Subarcuate:fossa -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone relationship: part_of UBERON:0001694 ! petrous part of temporal bone @@ -125911,6 +125858,7 @@ xref: Greater:cornu xref: http://www.snomedbrowser.com/Codes/Details/369008008 xref: MA:0002959 is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0001685 ! hyoid bone relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 @@ -125939,7 +125887,6 @@ xref: FMA:59499 xref: http://www.snomedbrowser.com/Codes/Details/369007003 xref: Lesser:cornu xref: MA:0002960 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015212 ! lateral structure @@ -125976,7 +125923,6 @@ synonym: "acinus of tarsal gland" EXACT [] synonym: "Meibomian gland acinus" EXACT [] synonym: "palpebral gland acinus" RELATED [] xref: EMAPA:37972 {source="MA:th"} -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011846 ! acinus of sebaceous gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001818 ! tarsal gland @@ -126088,10 +126034,9 @@ synonym: "cerebellum roof plate" RELATED [EHDAA2:0004401] xref: DHBA:12698 xref: EHDAA2:0004401 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1373 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005568 {source="EHDAA2"} ! rhombomere 1 roof plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002037 {source="EHDAA2"} ! cerebellum @@ -126233,7 +126178,6 @@ synonym: "periocular mesenchyme" RELATED [XAO:0004089] xref: XAO:0004089 xref: ZFA:0005572 is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_developmental_contribution_from UBERON:0003849 {evidence="PMID:3709965"} ! mesencephalic neural crest relationship: part_of UBERON:0010312 ! immature eye @@ -126275,8 +126219,8 @@ synonym: "spongiotrophoblast" BROAD [] synonym: "spongiotrophoblast layer of placenta" EXACT [] xref: BTO:0005402 xref: EMAPA:31876 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005292 ! extraembryonic tissue relationship: composed_primarily_of CL:0002499 ! spongiotrophoblast cell @@ -126293,7 +126237,6 @@ synonym: "germinal neuroepithelial layer" EXACT [http://orcid.org/0000-0002-6601 synonym: "germinal neuroepithelium" EXACT [NCBIBook:NBK10047] synonym: "original neural tube" EXACT [NCBIBook:NBK10047] is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium disjoint_from: UBERON:0006934 ! sensory epithelium relationship: adjacent_to UBERON:0003842 ! neural tube lumen @@ -126318,7 +126261,6 @@ xref: DHBA:10549 xref: EMAPA:32665 xref: Ganglionic:eminence xref: PBA:128012818 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 ! nervous system @@ -126332,7 +126274,6 @@ synonym: "MGE" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: DHBA:10550 xref: EMAPA:37471 {source="MA:th"} xref: PBA:128012834 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure disjoint_from: UBERON:0004025 {source="lexical"} ! lateral ganglionic eminence relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence @@ -126347,7 +126288,6 @@ synonym: "LGE" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: DHBA:10551 xref: EMAPA:37470 {source="MA:th"} xref: PBA:128012822 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence relationship: part_of UBERON:0004023 ! ganglionic eminence @@ -126363,7 +126303,6 @@ xref: DHBA:10552 xref: EFO:0001911 xref: EMAPA:37469 {source="MA:th"} xref: PBA:128012846 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence relationship: part_of UBERON:0004023 ! ganglionic eminence @@ -126379,7 +126318,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230972 xref: http://www.snomedbrowser.com/Codes/Details/256391000 xref: NCIT:C34123 xref: UMLS:C0230972 {source="ncithesaurus:Chorionic_Plate"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue relationship: contributes_to_morphology_of UBERON:0003124 ! chorion membrane relationship: part_of UBERON:0003124 ! chorion membrane @@ -126401,9 +126339,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/280605006 xref: NCIT:C32256 xref: Schlemm's:canal xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"} -xref: ZFA:0005829 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: part_of UBERON:0003956 ! aqueous drainage system @@ -126418,7 +126354,6 @@ comment: a mixture of episcleral venous blood and aqueous humor mix in this comb subset: pheno_slim xref: EMAPA:37428 {source="MA:th"} is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: channel_for UBERON:0001796 ! aqueous humor of eyeball relationship: channel_for UBERON:0013756 ! venous blood @@ -126457,7 +126392,6 @@ name: cutaneous microfibril def: "The fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin." [MP:0008419] subset: pheno_slim is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0003967 ! cutaneous elastic tissue relationship: part_of UBERON:0003967 ! cutaneous elastic tissue @@ -126476,6 +126410,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3233 xref: http://en.wikipedia.org/wiki/Subplate xref: https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png xref: PBA:294021932 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex intersection_of: UBERON:0014950 ! layer of developing cerebral cortex intersection_of: adjacent_to UBERON:0004040 ! cortical intermediate zone @@ -126523,6 +126458,7 @@ synonym: "cortical mantle layer" RELATED [] synonym: "IZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] xref: EMAPA:17545 xref: EMAPA:32712 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004061 ! neural tube mantle layer relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia @@ -126568,9 +126504,7 @@ xref: EMAPA:32831 xref: http://www.snomedbrowser.com/Codes/Details/279759001 xref: MA:0002770 xref: Osseous:ampullae -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct @@ -126806,7 +126740,6 @@ xref: EMAPA:37440 {source="MA:th"} xref: TAO:0005164 xref: ZFA:0005164 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004119 ! endoderm-derived structure relationship: adjacent_to UBERON:0001175 ! common hepatic duct relationship: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct @@ -126836,6 +126769,8 @@ is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium relationship: adjacent_to UBERON:0003842 ! neural tube lumen +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001049 ! neural tube relationship: develops_from UBERON:0004022 ! germinal neuroepithelium relationship: immediate_transformation_of UBERON:0004022 {source="NCBIBook:NBK10047"} ! germinal neuroepithelium relationship: part_of UBERON:0001049 ! neural tube @@ -126850,8 +126785,8 @@ synonym: "neural tube intermediate zone" EXACT [http://www.ncbi.nlm.nih.gov/book xref: EMAPA:17148 xref: EMAPA:35360 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1367 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034707 {source="NCBIBook:NBK10047"} ! differentiating neuroepithelium relationship: adjacent_to UBERON:0004060 ! neural tube ventricular layer relationship: adjacent_to UBERON:0004062 ! neural tube marginal layer @@ -126909,7 +126844,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1511061 xref: NCIT:C34111 xref: UMLS:C1511061 {source="ncithesaurus:Basal_Plate"} is_a: CARO:0000003 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: contributes_to_morphology_of UBERON:0004061 ! neural tube mantle layer relationship: developmentally_induced_by UBERON:0002328 {gene="Shh", source="Swenson"} ! notochord @@ -127007,7 +126941,6 @@ xref: MBA:151 xref: NLX:53 xref: NLXANAT:20090453 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe relationship: extends_fibers_into UBERON:0009121 {source="ISBN:0471888893"} ! vomeronasal nerve relationship: part_of RO:0002577 ! system @@ -127050,7 +126983,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1243 xref: Interposed:nucleus xref: NLXANAT:20081242 is_a: UBERON:0008995 ! nucleus of cerebellar nuclear complex -relationship: never_in_taxon NCBITaxon:8570 {source="ISBN:0471888893"} ! Serpentes relationship: only_in_taxon NCBITaxon:32524 {source="ISBN:0471888893"} ! Amniota relationship: part_of UBERON:0002130 {source="NIFSTD"} ! cerebellar nuclear complex @@ -127358,7 +127290,6 @@ xref: MA:0002844 xref: NCIT:C12306 xref: UMLS:C0227760 {source="ncithesaurus:Labium_Majus"} is_a: UBERON:0004084 ! genital labium -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0011755 {notes="posterior labial commissure", source="Wikipedia"} ! female labial swelling [Term] @@ -127507,7 +127438,6 @@ is_obsolete: true id: UBERON:0004098 name: tibial plateaux subset: pheno_slim -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000979 ! tibia @@ -127518,7 +127448,6 @@ def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a c subset: pheno_slim synonym: "synovial cavity of elbow joint" EXACT [FMA:38911] xref: FMA:38911 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001490 ! elbow joint @@ -127536,7 +127465,6 @@ synonym: "tubulus renalis colligens" RELATED LATIN [http://en.wikipedia.org/wiki xref: FMA:265239 xref: http://en.wikipedia.org/wiki/Collecting_duct_system xref: http://www.snomedbrowser.com/Codes/Details/279371005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002113 ! kidney @@ -127545,7 +127473,6 @@ id: UBERON:0004101 name: nasolabial region subset: pheno_slim is_a: UBERON:0001444 ! subdivision of head -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! nose [Term] @@ -127570,7 +127497,7 @@ xref: MESH:D000539 xref: NCIT:C89749 xref: UMLS:C0447411 {source="ncithesaurus:Alveolar_Ridge"} is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_developmental_contribution_from UBERON:0008969 {source="http://www.ncbi.nlm.nih.gov/pubmed/19767574", source="Wikipedia"} ! dental follicle relationship: part_of UBERON:0001708 ! jaw skeleton @@ -127595,7 +127522,6 @@ name: subungual region def: "Region beneath a nail or claw." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: CALOHA:TS-2351 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001705 ! nail @@ -127650,7 +127576,6 @@ synonym: "humerus compact bone" EXACT [] synonym: "humerus cortical bone" EXACT [] xref: FMA:31542 is_a: UBERON:0001439 ! compact bone tissue -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004269 ! upper arm connective tissue is_a: UBERON:0005808 ! bone tissue of long bone intersection_of: UBERON:0001439 ! compact bone tissue @@ -127663,7 +127588,6 @@ name: midnasal cavity def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641] subset: pheno_slim xref: FMA:59675 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0004771 ! posterior nasal aperture relationship: adjacent_to UBERON:0005928 ! external naris @@ -128217,6 +128141,7 @@ xref: ZFA:0000360 is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0012275 ! meso-epithelium +relationship: develops_from NCBITaxon:6072 ! Eumetazoa relationship: develops_from UBERON:0005498 ! primitive heart tube relationship: immediate_transformation_of UBERON:0005498 {source="ZFA-modified"} ! primitive heart tube relationship: part_of UBERON:0000922 ! embryo @@ -128247,7 +128172,6 @@ xref: MA:0000100 xref: VHOG:0000670 xref: XAO:0004139 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: channel_for UBERON:0000178 ! blood relationship: channels_from UBERON:0000948 ! heart relationship: channels_into UBERON:0001637 ! artery @@ -128441,7 +128365,6 @@ id: UBERON:0004162 name: pulmonary myocardium def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein." [GO:0003350] is_a: UBERON:0002036 ! striated muscle tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002016 ! pulmonary vein relationship: part_of UBERON:0002349 ! myocardium @@ -128465,7 +128388,6 @@ xref: XAO:0004325 is_a: CARO:0000003 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: composed_primarily_of UBERON:0001134 ! skeletal muscle tissue relationship: develops_from UBERON:0010360 {source="http://www.ncbi.nlm.nih.gov/pubmed/21610022"} ! pharyngeal arch mesenchyme from head mesenchyme relationship: innervated_by UBERON:0001785 {source="ISBN:0073040584"} ! cranial nerve @@ -128660,7 +128582,7 @@ def: "A saclike structure of the prostate gland, comprised of at least three cel synonym: "prostatic acinus" EXACT [FMA:66808] synonym: "prostatic follicle" EXACT [FMA:66808] xref: FMA:66808 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009842 {source="FMA"} ! glandular acinus relationship: develops_from UBERON:0009843 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! prostate epithelial cord @@ -128748,7 +128670,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1521760 xref: MA:0002912 xref: NCIT:C13104 xref: UMLS:C1521760 {source="ncithesaurus:Prostatic_Stroma"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma @@ -128812,16 +128733,12 @@ xref: NCIT:C77619 xref: UMLS:C0018597 {source="ncithesaurus:Harderian_Gland"} is_a: CARO:0000003 is_a: UBERON:0002365 ! exocrine gland -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015153 ! medial gland of ocular region intersection_of: UBERON:0015153 ! medial gland of ocular region intersection_of: produces UBERON:0022282 ! secretion of Harderian gland relationship: connected_to UBERON:0010207 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! nictitating membrane relationship: innervated_by UBERON:0015161 ! inferior branch of oculomotor nerve -relationship: never_in_taxon NCBITaxon:9443 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Primates -relationship: never_in_taxon NCBITaxon:9606 {notes="may be transient in embryos", source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Homo sapiens -relationship: never_in_taxon NCBITaxon:9787 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Perissodactyla relationship: only_in_taxon NCBITaxon:32523 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Tetrapoda relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0002330 {notes="some evidence suggests also endocrine", source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! exocrine system @@ -128848,7 +128765,6 @@ xref: BTO:0001515 xref: EMAPA:35458 xref: MA:0002847 is_a: UBERON:0004211 ! nephron epithelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0000074 ! renal glomerulus @@ -128931,7 +128847,6 @@ synonym: "S1 portion of tubule" EXACT [] synonym: "segment 1 of proximal tubule" EXACT [EMAPA:29657] xref: EMAPA:29657 xref: MA:0002612 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006555 ! excretory tube relationship: capable_of_part_of GO:0070295 {source="GO"} ! renal water absorption relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule @@ -128948,7 +128863,6 @@ synonym: "S2 portion of tubule" EXACT [] synonym: "segment 2 of proximal tubule" EXACT [EMAPA:29659] xref: EMAPA:29659 xref: MA:0002613 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006555 ! excretory tube relationship: capable_of_part_of GO:0070295 {source="GO"} ! renal water absorption relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule @@ -129009,7 +128923,6 @@ xref: NCIT:C33436 xref: Renal:pyramids xref: UMLS:C0227629 {source="ncithesaurus:Renal_Pyramid"} xref: UMLS:C1514613 {source="ncithesaurus:Pyramid_of_Malpighi"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part disjoint_from: UBERON:0005159 ! pyramid of medulla oblongata relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla @@ -129030,7 +128943,6 @@ synonym: "stria interna medullae renalis" EXACT LATIN [FMA:76663, FMA:TA] xref: EMAPA:29675 xref: FMA:76663 xref: MA:0002626 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0001293 ! outer medulla of kidney @@ -129049,7 +128961,6 @@ synonym: "stria externa medullae renalis" EXACT LATIN [FMA:76662, FMA:TA] xref: EMAPA:29663 xref: FMA:76662 xref: MA:0002629 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0001293 ! outer medulla of kidney @@ -129064,7 +128975,6 @@ synonym: "renal cortex collecting duct" RELATED [MA:0002600] xref: BTO:0002643 xref: EMAPA:28130 xref: MA:0002600 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: part_of UBERON:0001225 ! cortex of kidney @@ -129106,7 +129016,6 @@ relationship: part_of UBERON:0001294 ! inner medulla of kidney id: UBERON:0004206 name: long descending thin limb bend def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment." [GO:0072065] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001289 ! descending limb of loop of Henle @@ -129115,7 +129024,6 @@ id: UBERON:0004207 name: prebend segment of loop of Henle def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption." [GO:0072066] synonym: "prebend segment" RELATED [GO:0072066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001289 ! descending limb of loop of Henle relationship: part_of UBERON:0005096 {source="GO"} ! descending thin limb @@ -129670,7 +129578,6 @@ synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:35520 xref: MA:0002410 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004225 ! respiratory system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract @@ -129706,7 +129613,6 @@ synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic] xref: EMAPA:37669 {source="MA:th"} xref: MA:0000795 is_a: UBERON:0001135 ! smooth muscle tissue -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -129826,7 +129732,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1708179 xref: MA:0001635 xref: NCIT:C49483 xref: UMLS:C1708179 {source="ncithesaurus:Gallbladder_Smooth_Muscle_Tissue"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002110 ! gall bladder @@ -130443,7 +130348,6 @@ synonym: "pericardium of outflow tract" EXACT [OBOL:automatic] xref: EMAPA:37707 {source="MA:th"} xref: MA:0000491 is_a: UBERON:0002407 ! pericardium -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002407 ! pericardium intersection_of: part_of UBERON:0004145 ! outflow tract relationship: part_of UBERON:0004145 ! outflow tract @@ -130563,7 +130467,6 @@ xref: MA:0000984 xref: NCIT:C49230 xref: UMLS:C1707392 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle"} is_a: UBERON:0003911 ! choroid plexus epithelium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003911 ! choroid plexus epithelium intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle @@ -130693,6 +130596,7 @@ xref: EMAPA:17271 xref: http://www.snomedbrowser.com/Codes/Details/276146002 xref: MA:0000224 xref: VHOG:0000641 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system @@ -131671,7 +131575,6 @@ xref: NCIT:C81188 xref: UMLS:C0205950 {source="ncithesaurus:Skullcap"} xref: VHOG:0000331 xref: ZFA:0005606 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: contributes_to_morphology_of UBERON:0003128 ! cranium relationship: part_of UBERON:0001703 ! neurocranium @@ -131694,6 +131597,7 @@ xref: NCIT:C34101 xref: RETIRED_EHDAA2:0000114 xref: UMLS:C0002084 {source="ncithesaurus:Allantois"} xref: VHOG:0000738 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0000162 {source="Hymans"} ! cloaca relationship: has_developmental_contribution_from UBERON:0000925 {notes="hindgut diverticulum endoderm", source="ISBN:0073040584"} ! endoderm @@ -131759,6 +131663,7 @@ xref: EHDAA2:0002091 xref: EHDAA:56 xref: EMAPA:16046 xref: VHOG:0000979 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue relationship: develops_from UBERON:0000085 {source="EHDAA2"} ! morula @@ -131786,7 +131691,6 @@ is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 {source="MP"} ! nonskeletal ligament relationship: attaches_to UBERON:0000991 ! gonad relationship: develops_from UBERON:0003064 {source="Wikipedia"} ! intermediate mesoderm -relationship: never_in_taxon NCBITaxon:9721 {notes="primordium does not develop", source="ISBN:0123971756"} ! Cetacea relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000323 {source="BTO"} ! late embryo relationship: part_of UBERON:0000990 ! reproductive system @@ -131889,7 +131793,6 @@ xref: TAO:0002146 xref: UMLS:C1516037 {source="ncithesaurus:Apical_Ectodermal_Ridge"} xref: XAO:0004121 xref: ZFA:0001702 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0002050 ! embryonic structure relationship: capable_of GO:0010464 ! regulation of mesenchymal cell proliferation @@ -131937,7 +131840,6 @@ xref: MA:0002762 xref: NCIT:C32717 xref: UMLS:C0228023 {source="ncithesaurus:Head_of_the_Epididymis"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis @@ -131961,7 +131863,6 @@ xref: MA:0002764 xref: NCIT:C32217 xref: UMLS:C0228022 {source="ncithesaurus:Body_of_the_Epididymis"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis @@ -131987,7 +131888,6 @@ xref: MA:0002763 xref: NCIT:C33732 xref: UMLS:C0228024 {source="ncithesaurus:Tail_of_the_Epididymis"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis @@ -132003,7 +131903,6 @@ xref: FMA:72308 xref: http://www.snomedbrowser.com/Codes/Details/66275001 xref: MA:0002957 xref: Stylohyoid:ligament -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament is_a: UBERON:0010313 ! neural crest-derived structure relationship: connects UBERON:0003960 {source="Wikipedia"} ! styloid process of temporal bone @@ -132102,7 +132001,6 @@ synonym: "epamniotic cone" EXACT [] synonym: "placenta - ectoplacental cone" EXACT [] xref: BTO:0001715 xref: EMAPA:16059 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 ! trophoblast relationship: part_of UBERON:0000922 ! embryo @@ -132125,6 +132023,7 @@ name: extraembryonic ectoderm def: "Layer of the endoderm of the extraembryonic tissue." [MP:0002583] subset: pheno_slim xref: EMAPA:16065 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from UBERON:0000924 ! ectoderm @@ -132155,7 +132054,6 @@ xref: TAO:0002157 xref: UMLS:C0011665 {source="ncithesaurus:Descemet_s_Membrane"} xref: ZFA:0001686 is_a: UBERON:0005769 ! basement membrane of epithelium -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: adjacent_to UBERON:0001777 ! substantia propria of cornea intersection_of: adjacent_to UBERON:0001985 ! corneal endothelium @@ -132183,7 +132081,6 @@ xref: EHDAA2:0000793 xref: EMAPA:17622 xref: FMA:295800 is_a: UBERON:0003406 ! cartilage of respiratory system -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0010354 ! Reichert's cartilage pre-cartilage condensation @@ -132232,7 +132129,6 @@ xref: UMLS:C0229127 {source="ncithesaurus:Bowman_s_Membrane"} xref: ZFA:0001684 is_a: CARO:0000003 is_a: UBERON:0005769 ! basement membrane of epithelium -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: attaches_to UBERON:0001772 ! corneal epithelium intersection_of: part_of UBERON:0000964 ! cornea @@ -132355,7 +132251,6 @@ synonym: "humeral epiphysis" EXACT [OBOL:automatic] xref: FMA:32825 xref: http://www.snomedbrowser.com/Codes/Details/313054009 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000976 ! humerus relationship: part_of UBERON:0000976 ! humerus @@ -132371,7 +132266,6 @@ xref: FMA:33112 xref: http://www.snomedbrowser.com/Codes/Details/314626006 xref: MA:0003113 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000979 ! tibia relationship: part_of UBERON:0000979 ! tibia @@ -132387,7 +132281,6 @@ xref: FMA:32838 xref: http://www.snomedbrowser.com/Codes/Details/314625005 xref: MA:0003056 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000981 ! femur relationship: part_of UBERON:0000981 ! femur @@ -132401,7 +132294,6 @@ synonym: "radial epiphysis" EXACT [FMA:33770] xref: FMA:33770 xref: http://www.snomedbrowser.com/Codes/Details/313055005 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001423 ! radius bone relationship: part_of UBERON:0001423 ! radius bone @@ -132415,7 +132307,6 @@ synonym: "ulnar epiphysis" EXACT [FMA:33748] xref: FMA:33748 xref: http://www.snomedbrowser.com/Codes/Details/313056006 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001424 ! ulna relationship: part_of UBERON:0001424 ! ulna @@ -132442,7 +132333,6 @@ subset: pheno_slim synonym: "fibula epiphysis" EXACT [FMA:33726] xref: FMA:33726 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001446 ! fibula relationship: part_of UBERON:0001446 ! fibula @@ -132457,7 +132347,6 @@ synonym: "metatarsal bone epiphysis" EXACT [FMA:33814] synonym: "metatarsal epiphysis" EXACT [] xref: FMA:33814 xref: http://www.snomedbrowser.com/Codes/Details/313057002 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011973 ! epiphysis of phalanx of pes intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001448 ! metatarsal bone @@ -132474,7 +132363,6 @@ synonym: "metacarpal epiphysis" EXACT [] xref: FMA:33792 xref: http://www.snomedbrowser.com/Codes/Details/314907001 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0002374 ! metacarpal bone relationship: part_of UBERON:0002374 ! metacarpal bone @@ -133346,7 +133234,6 @@ def: "An epiphysis that is part of a phalanx [Automatically generated definition subset: pheno_slim xref: http://www.snomedbrowser.com/Codes/Details/280033007 is_a: UBERON:0001437 ! epiphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003221 ! phalanx relationship: part_of UBERON:0003221 ! phalanx @@ -133568,7 +133455,6 @@ def: "Sum of all sensory systems in an organism." [http://orcid.org/0000-0002-66 subset: uberon_slim synonym: "sense organ system" EXACT [FMA:78499] xref: FMA:78499 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: existence_ends_during UBERON:0000066 ! fully formed stage @@ -133870,7 +133756,6 @@ xref: FMA:46616 xref: http://en.wikipedia.org/wiki/Muscles_of_larynx xref: MESH:D007821 is_a: UBERON:0001015 ! musculature -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -134171,7 +134056,6 @@ name: skeletal muscle tissue of digastric def: "A portion of skeletal muscle tissue that is part of a digastric [Automatically generated definition]." [OBOL:automatic] xref: FMA:261872 is_a: UBERON:0001134 ! skeletal muscle tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001562 ! digastric muscle group relationship: part_of UBERON:0001562 ! digastric muscle group @@ -134182,7 +134066,6 @@ name: skeletal muscle tissue of mylohyoid def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Automatically generated definition]." [OBOL:automatic] xref: FMA:261878 is_a: UBERON:0001134 ! skeletal muscle tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001564 ! mylohyoid muscle relationship: part_of UBERON:0001564 ! mylohyoid muscle @@ -134203,7 +134086,6 @@ name: skeletal muscle tissue of masseter def: "A portion of skeletal muscle tissue that is part of a masseter [Automatically generated definition]." [OBOL:automatic] xref: FMA:261824 is_a: UBERON:0001134 ! skeletal muscle tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001597 ! masseter muscle relationship: part_of UBERON:0001597 ! masseter muscle @@ -134214,7 +134096,6 @@ name: skeletal muscle tissue of temporalis def: "A portion of skeletal muscle tissue that is part of a temporalis [Automatically generated definition]." [OBOL:automatic] xref: FMA:261740 is_a: UBERON:0001134 ! skeletal muscle tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001598 ! temporalis muscle relationship: part_of UBERON:0001598 ! temporalis muscle @@ -134225,7 +134106,6 @@ name: skeletal muscle tissue of levator palpebrae superioris def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]." [OBOL:automatic] xref: FMA:261782 is_a: UBERON:0003269 ! skeletal muscle tissue of eye -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris relationship: part_of UBERON:0001604 ! levator palpebrae superioris @@ -134237,7 +134117,6 @@ def: "A portion of skeletal muscle tissue that is part of a trapezius [Automatic synonym: "skeletal muscle tissue of trapezius muscle" RELATED [FMA:261938] xref: FMA:261938 is_a: UBERON:0001134 ! skeletal muscle tissue -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002380 ! trapezius muscle relationship: part_of UBERON:0002380 ! trapezius muscle @@ -134736,7 +134615,6 @@ xref: FMA:19153 xref: MA:0002825 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! reproductive structure -is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000485 ! simple columnar epithelium intersection_of: part_of UBERON:0001301 ! epididymis @@ -134786,7 +134664,6 @@ xref: FMA:52890 xref: http://www.snomedbrowser.com/Codes/Details/282814006 xref: MA:0002898 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001679 {source="MA"} ! ethmoid bone [Term] @@ -135766,8 +135643,6 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: http://www.snomedbrowser.com/Codes/Details/361515007 xref: VHOG:0000854 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear @@ -135872,7 +135747,6 @@ xref: MA:0000753 xref: NCIT:C33598 xref: UMLS:C0229681 {source="ncithesaurus:Splenic_Capsule"} is_a: UBERON:0003893 ! capsule -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002106 ! spleen relationship: contributes_to_morphology_of UBERON:0002106 ! spleen @@ -135906,7 +135780,6 @@ xref: MA:0000964 xref: NCIT:C49249 xref: UMLS:C0228162 {source="ncithesaurus:Lateral_Ventricle_Ependyma"} is_a: UBERON:0005357 ! brain ependyma -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle @@ -135925,7 +135798,6 @@ xref: MA:0000986 xref: NCIT:C49232 xref: UMLS:C0228171 {source="ncithesaurus:Fourth_Ventricle_Ependyma"} is_a: UBERON:0005357 ! brain ependyma -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle @@ -135951,10 +135823,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/25631003 xref: MA:0001693 xref: NCIT:C13318 xref: UMLS:C0225339 {source="ncithesaurus:Transitional_Epithelium"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! urothelium is_a: UBERON:0003350 ! epithelium of mucosa -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder @@ -135976,7 +135846,6 @@ xref: MA:0001977 xref: NCIT:C52940 xref: UMLS:C0226153 {source="ncithesaurus:Infraorbital_Artery"} is_a: UBERON:0001637 ! artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -135998,8 +135867,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/362194004 xref: MA:0002494 xref: NCIT:C32732 xref: UMLS:C0227518 {source="ncithesaurus:Hepatic_Lobule"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 {source="FMA"} ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001280 ! liver parenchyma relationship: has_part CL:0000182 ! hepatocyte relationship: part_of UBERON:0001280 {source="FMA", source="MA"} ! liver parenchyma @@ -136048,7 +135917,6 @@ xref: FMA:54682 xref: http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid xref: http://www.snomedbrowser.com/Codes/Details/140390001 xref: MA:0002774 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015212 ! lateral structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone @@ -136103,7 +135971,6 @@ xref: http://en.wikipedia.org/wiki/Body_of_humerus xref: http://www.snomedbrowser.com/Codes/Details/181927007 xref: MA:0002807 xref: NCIT:C120671 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000976 ! humerus @@ -136122,7 +135989,6 @@ xref: FMA:52904 xref: http://en.wikipedia.org/wiki/Temporal_process_of_the_zygomatic_bone xref: http://www.snomedbrowser.com/Codes/Details/122772003 xref: MA:0002812 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001683 {source="MA"} ! jugal bone relationship: part_of UBERON:0002500 {source="MA"} ! zygomatic arch @@ -136142,7 +136008,6 @@ xref: FMA:52886 xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_temporal_bone xref: http://www.snomedbrowser.com/Codes/Details/414110008 xref: MA:0002811 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001678 {source="MA"} ! temporal bone relationship: part_of UBERON:0002500 {source="MA"} ! zygomatic arch @@ -136169,7 +136034,6 @@ xref: GAID:219 xref: MA:0002816 xref: MESH:D008335 xref: MFMO:0000056 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0000401 ! mandibular ramus @@ -136184,7 +136048,6 @@ xref: FMA:59331 xref: http://www.snomedbrowser.com/Codes/Details/51354009 xref: MA:0002817 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004657 ! mandible condylar process [Term] @@ -136195,7 +136058,6 @@ synonym: "neck of mandible" EXACT [FMA:59332] xref: FMA:59332 xref: http://www.snomedbrowser.com/Codes/Details/368875004 xref: MA:0002818 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0004657 ! mandible condylar process @@ -136214,7 +136076,6 @@ xref: FMA:52833 xref: http://en.wikipedia.org/wiki/Coronoid_process_of_the_mandible xref: http://www.snomedbrowser.com/Codes/Details/244691004 xref: MA:0002819 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0000401 ! mandibular ramus @@ -136230,7 +136091,6 @@ synonym: "temporal crest of mandible" EXACT [FMA:59484] xref: FMA:59484 xref: MA:0002820 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:0010994 ! coronoid process of ulna relationship: part_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0001684 ! mandible @@ -136250,7 +136110,6 @@ xref: AAO:0000695 xref: FMA:11951 xref: http://www.snomedbrowser.com/Codes/Details/277423002 xref: MA:0002876 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0003861 ! neural arch relationship: part_of UBERON:0003861 ! neural arch @@ -136300,7 +136159,6 @@ synonym: "tunica muscularis glandulae vesiculosae" EXACT LATIN [FMA:19404, FMA:T xref: EMAPA:29773 xref: FMA:19404 xref: MA:0002913 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -136332,7 +136190,6 @@ xref: MA:0002939 xref: VHOG:0000927 is_a: UBERON:0000158 ! membranous layer is_a: UBERON:0005983 ! heart layer -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000158 ! membranous layer intersection_of: part_of UBERON:0002094 ! interventricular septum relationship: contributes_to_morphology_of UBERON:0002094 ! interventricular septum @@ -136376,8 +136233,6 @@ synonym: "aperture of fourth ventricle" EXACT [FMA:242766] xref: FMA:242766 xref: MA:0002945 is_a: UBERON:0000161 ! orifice -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle @@ -136744,7 +136599,6 @@ xref: MBA:843 xref: NLXANAT:091002 xref: OldNeuroNames:2304 {source="NLXANAT:091002"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation [Term] @@ -136870,7 +136724,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/44840002 xref: MA:0002182 xref: Nasofrontal:vein is_a: UBERON:0001638 ! vein -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connected_to UBERON:0011192 {subset="human_reference_atlas"} ! superior ophthalmic vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus @@ -137143,7 +136996,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1284055 xref: http://www.snomedbrowser.com/Codes/Details/361525002 xref: NCIT:C34114 xref: UMLS:C1284055 {source="ncithesaurus:Bulbus_Cordis"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000948 ! heart @@ -137178,6 +137030,7 @@ synonym: "paired appendage" NARROW [VSAO:0000067] synonym: "pectoral or pelvic appendage" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pelvic/pectoral appendage" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0000067 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000026 {source="VSAO"} ! appendage intersection_of: UBERON:0000026 ! appendage @@ -137254,10 +137107,9 @@ xref: MA:0002154 xref: MESH:D007601 xref: NCIT:C12738 xref: UMLS:C0022427 {source="ncithesaurus:Jugular_Vein"} -is_a: UBERON:0003502 ! neck blood vessel -is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0001638 ! vein relationship: drains UBERON:0000033 ! head -relationship: part_of UBERON:0000974 ! neck +relationship: part_of RO:0002577 ! system [Term] id: UBERON:0004713 @@ -137285,7 +137137,6 @@ xref: NCIT:C32382 xref: NCIT:C49269 xref: UMLS:C0227937 {source="ncithesaurus:Corpora_Cavernosa"} xref: UMLS:C1709494 {source="ncithesaurus:Penis_Erectile_Tissue"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006609 ! corpus cavernosum intersection_of: UBERON:0006609 ! corpus cavernosum @@ -137321,9 +137172,8 @@ xref: NCIT:C33536 xref: Septum:pellucidum xref: UMLS:C0036700 {source="ncithesaurus:Septum_Pellucidum"} xref: UMLS:C0036700 {source="BIRNLEX:1315"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: composed_primarily_of CL:0000125 ! glial cell relationship: contributes_to_morphology_of UBERON:0000446 ! septum of telencephalon relationship: part_of UBERON:0000446 ! septum of telencephalon @@ -137502,8 +137352,6 @@ xref: MA:0002771 xref: NCIT:C32063 xref: UMLS:C0229465 {source="ncithesaurus:Ampullary_Crest"} is_a: UBERON:0000020 ! sense organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0004043 ! semicircular canal ampulla relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla @@ -137562,7 +137410,6 @@ xref: MA:0001258 xref: NCIT:C52724 xref: UMLS:C0229251 {source="ncithesaurus:Medial_Palpebral_Ligament"} is_a: UBERON:0000211 ! ligament -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004772 ! eyelid tarsus [Term] @@ -137599,7 +137446,6 @@ xref: MA:0000978 xref: Piriform:cortex xref: UMLS:C0228280 {source="BIRNLEX:1097"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0002894 ! olfactory cortex relationship: only_in_taxon NCBITaxon:32523 {source="Wikipedia"} ! Tetrapoda relationship: part_of UBERON:0002894 ! olfactory cortex @@ -137739,8 +137585,6 @@ name: segmental subdivision of nervous system def: "Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres." [FBbt:00005140, http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "neuromere" RELATED [FBbt:00005140] -xref: FBbt:00005140 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit intersection_of: UBERON:0000063 ! organ subunit intersection_of: part_of UBERON:0001016 ! nervous system @@ -137754,9 +137598,7 @@ subset: non_informative synonym: "hindbrain segment" EXACT [FMA:61998] synonym: "segment of hindbrain" EXACT [FMA:61998] xref: FMA:61998 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000063 ! organ subunit intersection_of: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002028 ! hindbrain @@ -137809,7 +137651,6 @@ xref: AAO:0010430 xref: BTO:0001696 xref: http://en.wikipedia.org/wiki/Archenteron xref: XAO:0000092 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} ! Danio rerio relationship: part_of UBERON:0004734 ! gastrula @@ -137912,7 +137753,6 @@ xref: ZFA:0000184 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 {source="ZFA", source="ZFIN:ZDB-PUB-060210-7"} ! dermal bone relationship: connected_to UBERON:0003113 {gci_relation="part_of", gci_filler="NCBITaxon:32443"} ! dermatocranium -relationship: never_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0007831 {source="ZFA"} ! pectoral girdle skeleton [Term] @@ -137962,7 +137802,6 @@ is_a: UBERON:0002513 {source="VSAO"} ! endochondral bone is_a: UBERON:0007829 ! pectoral girdle bone disjoint_from: UBERON:0006633 ! coracoid process of scapula relationship: develops_from UBERON:0004753 ! scapulocoracoid -relationship: never_in_taxon NCBITaxon:32525 {reference="ISBN:0-03-910284-X"} ! Theria relationship: part_of UBERON:0007831 {source="VSAO"} ! pectoral girdle skeleton [Term] @@ -138023,8 +137862,6 @@ xref: EFO:0003542 xref: TAO:0000575 xref: ZFA:0000575 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0004637 ! otic capsule relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule @@ -138047,7 +137884,6 @@ xref: TAO:0000595 xref: VHOG:0001150 xref: ZFA:0000595 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:0015015 ! supraoccipital endochondral element intersection_of: UBERON:0015015 ! supraoccipital endochondral element @@ -138115,6 +137951,7 @@ xref: AAO:0000958 xref: TAO:0001381 xref: ZFA:0001381 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011613 ! hypohyal element relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage relationship: develops_from UBERON:0011612 {source="TAO"} ! hypohyal cartilage @@ -138133,7 +137970,6 @@ xref: AAO:0000379 xref: http://en.wikipedia.org/wiki/Palatoquadrate xref: TAO:0001399 xref: ZFA:0001399 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium @@ -138178,7 +138014,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362015004 xref: MA:0001873 xref: NCIT:C34241 xref: UMLS:C0016521 {source="ncithesaurus:Oval_Foramen"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0006678 ! foramen secundum relationship: part_of UBERON:0000922 ! embryo @@ -138232,7 +138067,6 @@ intersection_of: capable_of GO:0055078 ! sodium ion homeostasis intersection_of: part_of UBERON:0001052 ! rectum relationship: capable_of GO:0055078 ! sodium ion homeostasis relationship: confers_advantage_in ENVO:01000048 ! ocean biome -relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0001052 ! rectum relationship: present_in_taxon NCBITaxon:118072 ! Coelacanthimorpha @@ -138253,7 +138087,6 @@ intersection_of: UBERON:0002530 ! gland intersection_of: capable_of GO:0055078 ! sodium ion homeostasis relationship: capable_of GO:0055078 ! sodium ion homeostasis relationship: confers_advantage_in ENVO:00000447 ! marine biome -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata [Term] @@ -138287,7 +138120,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245448005 xref: NCIT:C32068 xref: UMLS:C0162322 {source="ncithesaurus:Anal_Gland"} is_a: UBERON:0003408 ! gland of digestive tract -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal @@ -138487,7 +138319,6 @@ xref: NCIT:C33736 xref: Tarsus:(eyelids) xref: UMLS:C0459586 {source="ncithesaurus:Tarsal_Plate"} is_a: UBERON:0000094 {source="FMA"} ! membrane organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of UBERON:0011823 ! dense connective tissue relationship: has_part CHEBI:18085 ! glycosaminoglycan relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid @@ -138605,7 +138436,6 @@ xref: EMAPA:35474 xref: FMA:321584 xref: http://www.snomedbrowser.com/Codes/Details/361941005 xref: MA:0002728 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001737 ! larynx @@ -138639,7 +138469,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1708197 xref: MA:0001899 xref: NCIT:C49299 xref: UMLS:C1708197 {source="ncithesaurus:Gastrointestinal_Tract_Lamina_Propria"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -138665,7 +138494,6 @@ xref: MA:0001633 xref: NCIT:C49228 xref: UMLS:C1708175 {source="ncithesaurus:Gallbladder_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -138709,7 +138537,6 @@ xref: FMA:14659 xref: http://www.snomedbrowser.com/Codes/Details/362197006 xref: MA:0001634 is_a: UBERON:0000042 ! serous membrane -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -138789,7 +138616,6 @@ xref: BTO:0005568 xref: EMAPA:36591 xref: http://www.snomedbrowser.com/Codes/Details/410433007 xref: MA:0001521 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -138863,7 +138689,6 @@ synonym: "mucous gland of larynx" EXACT [OBOL:automatic] xref: EMAPA:37631 {source="MA:th"} xref: MA:0001767 is_a: UBERON:0000414 ! mucous gland -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland intersection_of: part_of UBERON:0001737 ! larynx @@ -138897,13 +138722,13 @@ def: "The thymic connective tissue which extends into the parenchyma." [ISBN:0-3 subset: pheno_slim synonym: "thymic trabecula" EXACT [OBOL:automatic] synonym: "thymus gland trabecula" EXACT [OBOL:automatic] +synonym: "thymus trabeculae" EXACT PLURAL [] synonym: "trabecula of thymus" EXACT [OBOL:automatic] synonym: "trabecula of thymus gland" EXACT [OBOL:automatic] xref: http://linkedlifedata.com/resource/umls/id/C1515431 xref: MA:0002674 xref: NCIT:C33773 xref: UMLS:C1515431 {source="ncithesaurus:Thymic_Trabecula"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000440 ! trabecula intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002370 ! thymus @@ -138922,7 +138747,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518866 xref: MA:0002517 xref: NCIT:C33255 xref: UMLS:C1518866 {source="ncithesaurus:Pancreatic_Endocrine_Secretion"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: part_of UBERON:0000016 ! endocrine pancreas @@ -138940,7 +138764,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518867 xref: MA:0002518 xref: NCIT:C33256 xref: UMLS:C1518867 {source="ncithesaurus:Pancreatic_Exocrine_Secretion"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: part_of UBERON:0000017 ! exocrine pancreas @@ -138961,7 +138784,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227179 xref: MA:0002514 xref: NCIT:C52555 xref: UMLS:C0227179 {source="ncithesaurus:Esophagus_Secretion"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: part_of UBERON:0001043 ! esophagus @@ -139070,7 +138892,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1707050 xref: MA:0001833 xref: NCIT:C49207 xref: UMLS:C1707050 {source="ncithesaurus:Bronchus_Basal_Lamina"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004799 ! trachea basal lamina intersection_of: UBERON:0000482 ! basal lamina of epithelium intersection_of: part_of UBERON:0002185 ! bronchus @@ -139118,7 +138939,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/321764001 xref: MA:0001480 xref: VHOG:0000981 is_a: UBERON:0004807 ! respiratory system epithelium -is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000065 ! respiratory tract @@ -139136,8 +138956,8 @@ synonym: "penis epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0004039 xref: EMAPA:35674 xref: MA:0001742 +is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000989 ! penis relationship: part_of UBERON:0000989 ! penis @@ -139158,8 +138978,8 @@ xref: BTO:0002402 xref: CALOHA:TS-1316 xref: EMAPA:29043 xref: MA:0001718 +is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000993 ! oviduct relationship: part_of UBERON:0000993 ! oviduct @@ -139183,7 +139003,6 @@ xref: MA:0001745 xref: NCIT:C49295 xref: UMLS:C1710049 {source="ncithesaurus:Seminal_Vesicle_Epithelium"} is_a: UBERON:0004910 ! epithelium of male gonad -is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000998 ! seminal vesicle @@ -139448,7 +139267,6 @@ synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic] synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic] xref: EMAPA:36515 xref: MA:0001297 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001817 ! lacrimal gland @@ -139481,7 +139299,6 @@ xref: BTO:0000059 xref: CALOHA:TS-0505 xref: EMAPA:35457 xref: MA:0002846 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002113 ! kidney @@ -139501,7 +139318,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1711208 xref: MA:0001629 xref: NCIT:C43616 xref: UMLS:C1711208 {source="ncithesaurus:Bile_Duct_Epithelium"} -is_a: UBERON:0005911 ! endo-epithelium +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034932 ! epithelium of biliary system is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium @@ -139606,7 +139423,6 @@ synonym: "thyroid medulla" EXACT [OBOL:automatic] xref: EMAPA:37768 {source="MA:th"} xref: MA:0000132 is_a: UBERON:0000958 ! medulla of organ -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -139701,7 +139517,6 @@ name: hepatic duct smooth muscle def: "Smooth muscle tissue in all or part of a hepatic duct." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37598 {source="MA:th"} xref: MA:0001640 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005171 ! hepatic duct @@ -139989,7 +139804,6 @@ is_a: UBERON:0002203 ! vasculature of eye is_a: UBERON:0036302 ! vasculature of central nervous system plus retina intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000966 ! retina -relationship: never_in_taxon NCBITaxon:8782 {source="http://www.ncbi.nlm.nih.gov/pubmed/21622558", source="http://www.ncbi.nlm.nih.gov/pubmed/2772405", submitter="michaelerice"} ! Aves relationship: part_of UBERON:0000966 ! retina [Term] @@ -140039,7 +139853,6 @@ xref: FMA:84961 xref: http://www.snomedbrowser.com/Codes/Details/280541000 xref: Orbit:(anatomy) xref: ZFA:0005558 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0001697 ! orbit of skull @@ -140053,7 +139866,6 @@ def: "A layer of tissue in the eye of many vertebrate animals, that lies immedia synonym: "tapeta lucida" EXACT PLURAL [] synonym: "tapetum lucidum" EXACT [] xref: Tapetum:lucidum -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015169 ! tapetum relationship: part_of UBERON:0010230 ! eyeball of camera-type eye @@ -140065,11 +139877,8 @@ synonym: "parietal eye" EXACT [http://en.wikipedia.org/wiki/Parietal_eye] synonym: "third eye" RELATED [http://en.wikipedia.org/wiki/Parietal_eye] xref: Parietal:eye is_a: UBERON:0003103 {source="cjm"} ! compound organ -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part UBERON:0005388 {gci_filler="NCBITaxon:8508", gci_relation="part_of", source="Wikipedia"} ! photoreceptor array relationship: has_part UBERON:0005389 {gci_filler="NCBITaxon:8508", gci_relation="part_of", source="Wikipedia"} ! transparent eye structure -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0015238 {source="cjm"} ! pineal complex [Term] @@ -140105,7 +139914,6 @@ xref: BILA:0000047 xref: Division_into_layers xref: FMA:295570 xref: XAO:0000271 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 ! lateral plate mesoderm @@ -140123,7 +139931,6 @@ xref: BILA:0000044 xref: Division_into_layers xref: FMA:295568 xref: XAO:0000276 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 ! lateral plate mesoderm @@ -140142,7 +139949,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1519472 xref: NCIT:C34303 xref: UMLS:C1519472 {source="ncithesaurus:Splanchnopleure"} xref: VHOG:0000558 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 {source="EHDAA2"} ! lateral plate mesoderm @@ -140160,7 +139966,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1519423 xref: NCIT:C34301 xref: UMLS:C1519423 {source="ncithesaurus:Somatopleure"} xref: VHOG:0000557 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 {source="EHDAA2"} ! lateral plate mesoderm @@ -140247,7 +140052,6 @@ xref: AAO:0000478 xref: EFO:0003426 xref: TAO:0000091 xref: ZFA:0000091 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0000922 ! embryo @@ -140263,7 +140067,7 @@ xref: FMA:77859 xref: http://en.wikipedia.org/wiki/Eponychium xref: http://www.snomedbrowser.com/Codes/Details/24631007 xref: MA:0002704 -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0001003 ! skin epidermis relationship: surrounds UBERON:0001705 ! nail @@ -140276,8 +140080,8 @@ synonym: "lung-associated mesenchyme" EXACT [GO:0060484] synonym: "mesenchyme of lung" EXACT [OBOL:automatic] synonym: "pulmonary mesenchyme" EXACT [GO:0060484] xref: EMAPA:32866 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002048 ! lung relationship: develops_from UBERON:0003081 ! lateral plate mesoderm @@ -140326,7 +140130,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/264017007 xref: MA:0003099 xref: NCIT:C49282 xref: UMLS:C0225701 {source="ncithesaurus:Hilar_Area_of_the_Lung"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002048 ! lung @@ -140410,7 +140213,6 @@ id: UBERON:0004892 name: lobar bronchus alveolar system def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus." [LG:0012622] is_a: UBERON:0000467 ! anatomical system -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002183 ! lobar bronchus [Term] @@ -140428,7 +140230,6 @@ xref: MA:0000421 xref: NCIT:C49473 xref: UMLS:C1706784 {source="ncithesaurus:Alveolar_Septum"} is_a: UBERON:0003037 ! septum -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003037 ! septum intersection_of: adjacent_to UBERON:0002299 ! alveolus of lung relationship: adjacent_to UBERON:0002299 ! alveolus of lung @@ -140453,7 +140254,6 @@ xref: MA:0002568 xref: NCIT:C13085 xref: UMLS:C0225695 {source="ncithesaurus:Alveolar_Wall"} is_a: UBERON:0000060 ! anatomical wall -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002299 ! alveolus of lung relationship: contributes_to_morphology_of UBERON:0002299 ! alveolus of lung @@ -140627,6 +140427,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279973004 xref: NCIT:C33010 xref: UMLS:C0226875 {source="ncithesaurus:Lower_Gastrointestinal_Tract"} xref: Upper_gastrointestinal_tract +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001046 ! hindgut relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -140645,6 +140446,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/181244000 xref: NCIT:C33837 xref: UMLS:C0226874 {source="ncithesaurus:Upper_Gastrointestinal_Tract"} xref: Upper_gastrointestinal_tract +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001041 ! foregut @@ -140657,11 +140459,9 @@ synonym: "gonadal epithelium" EXACT [OBOL:automatic] synonym: "gonadal sheath" RELATED [FBbt:00004859] xref: EHDAA:4032 xref: EHDAA:5931 -xref: FBbt:00004859 xref: http://linkedlifedata.com/resource/umls/id/C1517534 xref: NCIT:C32676 xref: UMLS:C1517534 {source="ncithesaurus:Germinal_Epithelium"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000483 ! epithelium @@ -140676,7 +140476,6 @@ synonym: "testis epithelium" EXACT [OBOL:automatic] synonym: "testis sheath" NARROW SENSU [FBbt:00004955] xref: BTO:0001364 xref: EMAPA:17973 -xref: FBbt:00004955 is_a: UBERON:0004909 ! epithelium of gonad intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000473 ! testis @@ -140690,7 +140489,6 @@ synonym: "ovarian epithelium" EXACT [OBOL:automatic] synonym: "ovarian sheath" NARROW SENSU [FBbt:00004896] synonym: "ovary epithelium" EXACT [OBOL:automatic] xref: BTO:0003661 -xref: FBbt:00004896 is_a: UBERON:0004909 ! epithelium of gonad intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000992 ! ovary @@ -140757,7 +140555,6 @@ xref: FMA:15953 xref: http://www.snomedbrowser.com/Codes/Details/245389007 xref: MA:0003107 xref: NCIT:C119578 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000320 ! duodenal mucosa @@ -140780,7 +140577,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/181271000 xref: MESH:A03.159.183.079.300.900.600 xref: NCIT:C13065 xref: UMLS:C0028872 {source="ncithesaurus:Sphincter_of_Oddi"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011185 ! gastrointestinal sphincter intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla @@ -140885,7 +140681,6 @@ synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [FMA:71131] xref: FBbt:00100315 xref: FMA:71131 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: subdivision_of UBERON:0001555 ! digestive tract @@ -140921,6 +140716,7 @@ xref: MBA:98 xref: NLX:144262 xref: PBA:294021970 xref: Subventricular:zone +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: contains_process GO:0022008 ! neurogenesis @@ -141159,7 +140955,6 @@ synonym: "biliary tree submucosa" EXACT [OBOL:automatic] synonym: "submucosa of biliary tract" EXACT [OBOL:automatic] xref: FMA:18009 is_a: UBERON:0000009 ! submucosa -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0001173 ! biliary tree @@ -141232,7 +141027,6 @@ xref: EMAPA:32275 xref: FMA:15929 xref: http://www.snomedbrowser.com/Codes/Details/88384001 is_a: UBERON:0000009 ! submucosa -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder @@ -141404,7 +141198,6 @@ xref: FMA:15894 xref: galen:MucousMembraneOfUreter xref: http://www.snomedbrowser.com/Codes/Details/40476001 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0000056 ! ureter @@ -141424,7 +141217,6 @@ synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic] xref: FMA:64015 xref: http://www.snomedbrowser.com/Codes/Details/156751001 is_a: UBERON:0004987 ! mucosa of laryngopharynx -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000388 ! epiglottis relationship: part_of UBERON:0000388 ! epiglottis @@ -141445,7 +141237,6 @@ synonym: "vaginal mucosa" EXACT [FMA:19975] xref: BTO:0005676 xref: FMA:19975 xref: http://www.snomedbrowser.com/Codes/Details/362245006 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000996 ! vagina @@ -141473,7 +141264,6 @@ synonym: "seminal vesicle organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa glandulae vesiculosae" EXACT LATIN [FMA:19405, FMA:TA] xref: FMA:19405 xref: http://www.snomedbrowser.com/Codes/Details/252260007 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000998 ! seminal vesicle @@ -141932,7 +141722,6 @@ synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic] synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic] xref: FMA:14695 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0001173 ! biliary tree @@ -142092,7 +141881,6 @@ synonym: "renal pelvis organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pelvis renalis" EXACT LATIN [FMA:17931, FMA:TA] xref: FMA:17931 xref: http://www.snomedbrowser.com/Codes/Details/243482002 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001224 ! renal pelvis @@ -142118,7 +141906,6 @@ synonym: "mucous membrane of major calyx" EXACT [OBOL:automatic] synonym: "organ mucosa of major calix" EXACT [OBOL:automatic] synonym: "organ mucosa of major calyx" EXACT [OBOL:automatic] xref: FMA:17934 -is_a: UBERON:0004797 ! blood vessel layer is_a: UBERON:0005006 ! mucosa of renal pelvis intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001226 ! major calyx @@ -142144,7 +141931,6 @@ synonym: "mucous membrane of minor calyx" EXACT [OBOL:automatic] synonym: "organ mucosa of minor calix" EXACT [OBOL:automatic] synonym: "organ mucosa of minor calyx" EXACT [OBOL:automatic] xref: FMA:17937 -is_a: UBERON:0004797 ! blood vessel layer is_a: UBERON:0005006 ! mucosa of renal pelvis intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001227 ! minor calyx @@ -142466,7 +142252,6 @@ synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic] xref: EMAPA:36028 xref: FMA:60113 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001706 ! nasal septum relationship: part_of UBERON:0001706 ! nasal septum @@ -142500,7 +142285,6 @@ synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic] synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic] xref: FMA:59765 is_a: UBERON:0003729 ! mouth mucosa -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001716 ! secondary palate relationship: part_of UBERON:0001716 ! secondary palate @@ -142585,7 +142369,6 @@ xref: FMA:54971 xref: http://www.snomedbrowser.com/Codes/Details/361938001 is_a: UBERON:0000355 ! pharyngeal mucosa is_a: UBERON:0000379 ! tracheal mucosa -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -142612,7 +142395,6 @@ synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic] xref: FMA:54933 xref: http://www.snomedbrowser.com/Codes/Details/144632009 is_a: UBERON:0000355 ! pharyngeal mucosa -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001729 ! oropharynx @@ -142726,7 +142508,6 @@ synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic] synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic] xref: FMA:85366 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001770 ! lacrimal canaliculus relationship: part_of UBERON:0001770 ! lacrimal canaliculus @@ -142759,7 +142540,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226933 xref: http://www.snomedbrowser.com/Codes/Details/362088009 xref: NCIT:C12224 xref: UMLS:C0226933 {source="ncithesaurus:Mucosa_of_the_Upper_Lip"} -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036294 ! mucosa of lip intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001834 ! upper lip @@ -142782,7 +142562,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226939 xref: http://www.snomedbrowser.com/Codes/Details/362089001 xref: NCIT:C12225 xref: UMLS:C0226939 {source="ncithesaurus:Mucosa_of_the_Lower_Lip"} -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036294 ! mucosa of lip intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001835 ! lower lip @@ -142812,7 +142591,6 @@ synonym: "tunica mucosa vesicae biliaris" EXACT LATIN [FMA:14662, FMA:TA] xref: FMA:14662 xref: http://www.snomedbrowser.com/Codes/Details/362196002 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -143067,7 +142845,6 @@ synonym: "tympanic membrane external middle ear cavity epithelial component" EXA synonym: "tympanic membrane mucosa" EXACT [FMA:56844] xref: FMA:56844 xref: http://www.snomedbrowser.com/Codes/Details/36411006 -is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0009647 ! tympanic membrane epithelium intersection_of: UBERON:0009647 ! tympanic membrane epithelium intersection_of: part_of UBERON:0010063 ! tympanic cavity epithelium @@ -143087,8 +142864,6 @@ synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664] synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic] xref: FMA:59664 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002392 ! nasolacrimal duct relationship: part_of UBERON:0002392 ! nasolacrimal duct @@ -143216,7 +142991,6 @@ synonym: "uterine tube mucosa of organ" EXACT [OBOL:automatic] synonym: "uterine tube mucous membrane" EXACT [OBOL:automatic] synonym: "uterine tube organ mucosa" EXACT [OBOL:automatic] xref: FMA:18319 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0003889 ! fallopian tube @@ -143252,7 +143026,6 @@ xref: EMAPA:37646 {source="MA:th"} xref: FMA:14506 xref: http://www.snomedbrowser.com/Codes/Details/271187002 xref: MA:0001643 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002107 ! liver @@ -143269,7 +143042,6 @@ xref: FMA:19812 xref: http://www.snomedbrowser.com/Codes/Details/362279007 xref: MA:0003240 xref: Mediastinum:testis -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000473 ! testis @@ -143303,6 +143075,7 @@ synonym: "nerve cord" EXACT [BILA:0000136] synonym: "true nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BILA:0000136 xref: BTO:0001656 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster relationship: develops_from UBERON:0000924 ! ectoderm relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -143406,7 +143179,6 @@ xref: NCIT:C34224 xref: Neural:groove xref: UMLS:C0814992 {source="ncithesaurus:Neural_Groove"} xref: XAO:0000248 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate @@ -143499,7 +143271,6 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0005069 name: neural fold hinge point def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube @@ -143561,7 +143332,7 @@ synonym: "forebrain-midbrain boundary region" EXACT [EMAPA:36449] xref: EMAPA:36449 xref: TAO:0001367 xref: ZFA:0001367 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0001890 ! forebrain @@ -143576,7 +143347,6 @@ id: UBERON:0005076 name: hindbrain-spinal cord boundary def: "An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord." [OBOL:automatic] synonym: "hindbrain-spinal cord boundary region" EXACT [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0002028 ! hindbrain @@ -143592,7 +143362,6 @@ def: "A temporary opening leading from the central canal of the embryonic neural subset: pheno_slim xref: http://www.snomedbrowser.com/Codes/Details/360408007 is_a: UBERON:0000161 ! orifice -is_a: UBERON:0004121 ! ectoderm-derived structure union_of: UBERON:0005070 ! anterior neuropore union_of: UBERON:0005071 ! posterior neuropore relationship: connects UBERON:0003842 ! neural tube lumen @@ -143612,8 +143381,9 @@ xref: EMAPA:16904 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=208 xref: Lamina:terminalis xref: VHOG:0001547 +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium disjoint_from: UBERON:0014898 ! lamina terminalis of ischium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: output_of GO:0021506 ! anterior neuropore closure @@ -143628,10 +143398,8 @@ xref: BTO:0001716 xref: http://en.wikipedia.org/wiki/Eggshell xref: MESH:D004528 xref: WBbt:0005843 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: bounding_layer_of UBERON:0007379 ! shelled egg -relationship: never_in_taxon NCBITaxon:32525 ! Theria relationship: part_of UBERON:0007379 ! shelled egg [Term] @@ -143677,7 +143445,6 @@ name: ectodermal placode def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]." [GO:0060788] synonym: "epithelial placode" RELATED [AEO:0000112] xref: AEO:0000218 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm @@ -143751,7 +143518,6 @@ synonym: "muscle" RELATED [] synonym: "muscle element" RELATED [] synonym: "musculus" EXACT [FMA:30316] xref: EMAPA:32715 -xref: FBbt:00005073 xref: FMA:30316 is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure @@ -143767,7 +143533,6 @@ xref: EHDAA:482 xref: EMAPA:16238 xref: FMA:70321 xref: VHOG:0000488 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: in_left_side_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002063 ! sinus venosus @@ -143781,7 +143546,6 @@ xref: EHDAA:484 xref: EMAPA:16239 xref: FMA:70318 xref: VHOG:0000489 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: in_right_side_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002063 ! sinus venosus @@ -143839,7 +143603,6 @@ xref: EMAPA:35514 xref: FMA:17719 xref: http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle xref: MA:0002625 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001288 ! loop of Henle relationship: part_of UBERON:0004136 ! intermediate tubule @@ -143883,7 +143646,6 @@ name: early distal convoluted tubule def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067] xref: EMAPA:28393 is_a: UBERON:0004211 ! nephron epithelium -is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] @@ -143892,7 +143654,6 @@ name: late distal convoluted tubule def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068] xref: EMAPA:28393 is_a: UBERON:0004211 ! nephron epithelium -is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] @@ -143900,7 +143661,6 @@ id: UBERON:0005103 name: mesonephric epithelium def: "An epithelium that is part of a mesonephros [Automatically generated definition]." [OBOL:automatic] is_a: UBERON:0004819 ! kidney epithelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -143940,7 +143700,6 @@ synonym: "cap mesenchyme" EXACT [EMAPA:27621] synonym: "condensed mesenchyme" RELATED [EMAPA:27621] xref: EMAPA:27621 xref: MA:0002997 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003220 ! metanephric mesenchyme @@ -143951,7 +143710,6 @@ id: UBERON:0005108 name: metanephric epithelium def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207] is_a: UBERON:0004819 ! kidney epithelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0000081 ! metanephros @@ -143975,8 +143733,10 @@ is_a: UBERON:0001285 ! nephron is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0000081 ! metanephros +relationship: develops_from UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003220 {source="http://en.wikipedia.org/wiki/Nephron"} ! metanephric mesenchyme relationship: develops_from UBERON:0003220 {source="Wikipedia"} ! metanephric mesenchyme +relationship: develops_from UBERON:0005113 ! metanephric cortex mesenchyme relationship: develops_from UBERON:0010535 ! primitive metanephric nephron relationship: immediate_transformation_of UBERON:0010535 {source="Bgee:AN"} ! primitive metanephric nephron relationship: part_of UBERON:0000081 ! metanephros @@ -143985,7 +143745,6 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0005111 name: metanephric pyramid def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004200 ! kidney pyramid intersection_of: UBERON:0004200 ! kidney pyramid intersection_of: part_of UBERON:0000081 ! metanephros @@ -144014,7 +143773,6 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005115 name: metanephric cortical collecting duct def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004203 ! cortical collecting duct intersection_of: UBERON:0004203 ! cortical collecting duct intersection_of: part_of UBERON:0000081 ! metanephros @@ -144026,7 +143784,6 @@ relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github id: UBERON:0005116 name: metanephric descending thin limb def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005096 ! descending thin limb intersection_of: UBERON:0005096 ! descending thin limb intersection_of: part_of UBERON:0000081 ! metanephros @@ -144084,7 +143841,6 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005121 name: metanephric long descending thin limb bend def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004206 ! long descending thin limb bend intersection_of: UBERON:0004206 ! long descending thin limb bend intersection_of: part_of UBERON:0000081 ! metanephros @@ -144105,7 +143861,6 @@ relationship: part_of UBERON:0004738 {is_inferred="true", source="https://github id: UBERON:0005123 name: metanephric prebend segment def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004207 ! prebend segment of loop of Henle intersection_of: UBERON:0004207 ! prebend segment of loop of Henle intersection_of: part_of UBERON:0000081 ! metanephros @@ -144246,7 +144001,6 @@ name: metanephric capsule alt_id: UBERON:0005112 def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213] is_a: UBERON:0002015 ! kidney capsule -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0000081 ! metanephros @@ -144311,6 +144065,7 @@ def: "A metanephric nephron tubule is an epithelial tube that is part of the met is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0005134 ! metanephric nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0001231 ! nephron tubule intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme @@ -144327,6 +144082,7 @@ xref: EHDAA:9346 xref: EMAPA:27678 is_a: UBERON:0004209 ! renal vesicle is_a: UBERON:0005108 ! metanephric epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0004209 ! renal vesicle intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme @@ -144425,7 +144181,6 @@ synonym: "CNS parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of central nervous system" EXACT [] synonym: "parenchyma of CNS" EXACT [OBOL:automatic] is_a: UBERON:0000353 ! parenchyma -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001017 ! central nervous system property_value: dc-contributor https://github.com/cmungall @@ -144452,7 +144207,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279289009 xref: http://www.snomedbrowser.com/Codes/Details/9535007 xref: Pyramid:(brainstem) is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -144583,9 +144337,9 @@ xref: MA:0001460 xref: Membrana:granulosa xref: TAO:0001112 xref: ZFA:0001112 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004911 ! epithelium of female gonad -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000119 ! cell layer intersection_of: composed_primarily_of CL:0000501 ! granulosa cell intersection_of: part_of UBERON:0001305 ! ovarian follicle @@ -144690,10 +144444,8 @@ xref: MESH:A14.254.900.720.265 xref: TAO:0005138 xref: ZFA:0005138 is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster relationship: develops_from UBERON:0000924 ! ectoderm -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0008281 ! tooth bud [Term] @@ -144774,8 +144526,6 @@ xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_(hair) xref: http://www.snomedbrowser.com/Codes/Details/318929009 xref: MA:0000158 is_a: UBERON:0000958 ! medulla of organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001037 ! strand of hair @@ -144790,7 +144540,6 @@ xref: BTO:0004536 xref: EMAPA:28061 xref: EMAPA:35459 xref: MA:0002935 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: part_of UBERON:0000362 ! renal medulla @@ -144862,7 +144611,6 @@ xref: UMLS:C0226184 {source="ncithesaurus:Ethmoidal_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest union_of: UBERON:0012318 ! anterior ethmoidal artery union_of: UBERON:0012319 ! posterior ethmoidal artery relationship: branching_part_of UBERON:0001619 {source="FMA-abduced"} ! ophthalmic artery @@ -144911,7 +144659,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1710156 xref: MA:0000764 xref: NCIT:C49760 xref: UMLS:C1710156 {source="ncithesaurus:Spleen_Germinal_Center"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010754 ! germinal center intersection_of: UBERON:0010754 ! germinal center intersection_of: part_of UBERON:0002106 ! spleen @@ -144930,6 +144677,7 @@ xref: EMAPA:16990 xref: EMAPA:25149 xref: MA:0000234 xref: VHOG:0000920 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001780 {source="MA"} ! spinal nerve relationship: develops_from UBERON:0000044 {source="EHDAA2"} ! dorsal root ganglion relationship: develops_from UBERON:0001806 {source="EHDAA2"} ! sympathetic ganglion @@ -145006,9 +144754,7 @@ xref: EMAPA:36574 xref: FMA:7473 xref: http://www.snomedbrowser.com/Codes/Details/197423006 xref: MA:0002937 -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0011148 ! submucosal gland -is_a: UBERON:0036225 ! respiratory system gland +is_a: UBERON:8410077 ! airway submucosal gland intersection_of: UBERON:0011148 ! submucosal gland intersection_of: has_part CL:0000159 ! seromucus secreting cell intersection_of: part_of UBERON:0002202 ! submucosa of trachea @@ -145023,7 +144769,6 @@ subset: organ_slim synonym: "laryngeal submucosa gland" RELATED [EMAPA:35475] xref: EMAPA:35475 xref: MA:0002729 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0004778 ! larynx submucosa @@ -145037,7 +144782,6 @@ xref: EMAPA:35902 xref: FMA:19979 xref: MA:0002737 is_a: UBERON:0000030 ! lamina propria -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000996 ! vagina @@ -145050,8 +144794,8 @@ def: "Stromal matrix surrounding blood vessels within the choroid plexus." [PMCI synonym: "choroid plexus stromal matrix" EXACT [PMCID:PMC3496674] xref: EMAPA:36609 xref: MA:0000825 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0001886 ! choroid plexus relationship: has_part CL:0000235 ! macrophage @@ -145064,7 +144808,6 @@ name: tonsil capsule def: "A capsule that is part of a tonsil [Automatically generated definition]." [OBOL:automatic] xref: FMA:294647 xref: MA:0000776 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002372 ! tonsil @@ -145081,7 +144824,6 @@ xref: EHDAA2:0000302 xref: EMAPA:17327 xref: MA:0001871 is_a: UBERON:0003978 ! valve -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium @@ -145119,7 +144861,6 @@ synonym: "testis interstitium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:18687 xref: http://www.snomedbrowser.com/Codes/Details/362280005 xref: MA:0002713 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005169 ! interstitial tissue intersection_of: UBERON:0005169 ! interstitial tissue @@ -145205,7 +144946,7 @@ synonym: "subarachnoid space mesencephalon" RELATED [VHOG:0001304] synonym: "subarachnoid space midbrain" EXACT [VHOG:0001304] xref: EMAPA:19055 xref: VHOG:0001304 -is_a: UBERON:0000315 ! subarachnoid space +is_a: UBERON:0039175 ! subarachnoid space of brain intersection_of: UBERON:0000315 ! subarachnoid space intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001891 ! midbrain @@ -145217,7 +144958,7 @@ def: "A subarachnoid space that is part of a diencephalon [Automatically generat synonym: "subarachnoid space diencephalon" EXACT [VHOG:0001302] xref: EMAPA:19053 xref: VHOG:0001302 -is_a: UBERON:0000315 ! subarachnoid space +is_a: UBERON:0039175 ! subarachnoid space of brain intersection_of: UBERON:0000315 ! subarachnoid space intersection_of: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001894 ! diencephalon @@ -145230,7 +144971,7 @@ synonym: "subarachnoid space hindbrain" EXACT [VHOG:0001303] synonym: "subarachnoid space rhombencephalon" RELATED [VHOG:0001303] xref: EMAPA:18211 xref: VHOG:0001303 -is_a: UBERON:0000315 ! subarachnoid space +is_a: UBERON:0039175 ! subarachnoid space of brain intersection_of: UBERON:0000315 ! subarachnoid space intersection_of: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002028 ! hindbrain @@ -145242,7 +144983,6 @@ def: "A parenchyma that is part of a head of pancreas [Automatically generated d xref: EMAPA:17508 xref: VHOG:0000838 is_a: UBERON:0001978 ! parenchyma of pancreas -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001069 ! head of pancreas relationship: part_of UBERON:0001069 ! head of pancreas @@ -145295,7 +145035,6 @@ xref: EHDAA2:0001392 xref: EMAPA:17513 xref: VHOG:0000469 is_a: UBERON:0001978 ! parenchyma of pancreas -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001151 ! tail of pancreas relationship: part_of UBERON:0001151 ! tail of pancreas @@ -145307,7 +145046,8 @@ def: "An epithelium that is part of a hindlimb stylopod [Automatically generated xref: EHDAA2:0002131 xref: EMAPA:17500 xref: VHOG:0001041 -is_a: UBERON:0010371 ! ecto-epithelium +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000376 ! hindlimb stylopod relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm @@ -145366,7 +145106,8 @@ def: "An epithelium that is part of a lower leg [Automatically generated definit xref: EHDAA2:0001031 xref: EMAPA:17497 xref: VHOG:0001050 -is_a: UBERON:0010371 ! ecto-epithelium +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod relationship: develops_from UBERON:0003371 {source="EHDAA2"} ! pelvic appendage bud ectoderm @@ -145437,8 +145178,6 @@ xref: UMLS:C0458718 {source="ncithesaurus:Vestibule"} xref: VHOG:0001220 xref: XAO:0000199 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0001839 ! bony labyrinth @@ -145543,7 +145282,6 @@ def: "A renal pelvis that is part of a metanephros." [OBOL:automatic] synonym: "metanephros pelvis" EXACT [VHOG:0000945] xref: VHOG:0000945 is_a: UBERON:0001224 ! renal pelvis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0000081 ! metanephros @@ -145555,7 +145293,6 @@ def: "A gland that is part of a stomodeum." [OBOL:automatic] subset: organ_slim synonym: "stomatodaeum gland" EXACT [VHOG:0000658] xref: VHOG:0000658 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000930 ! stomodeum @@ -145846,7 +145583,6 @@ xref: EMAPA:37623 {source="MA:th"} xref: FMA:74288 xref: KUPO:0001008 xref: MA:0001648 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001225 {source="FMA", source="KUPO"} ! cortex of kidney @@ -146010,7 +145746,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1378 xref: TAO:0000447 xref: Tela:chorioidea xref: ZFA:0000447 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0005358 {source="FMA"} ! ventricle of nervous system @@ -146023,9 +145758,7 @@ synonym: "tela choroidea of cerebral aqueduct" EXACT [https://orcid.org/0000-000 synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157] xref: TAO:0005157 xref: ZFA:0005157 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002289 ! midbrain cerebral aqueduct relationship: part_of UBERON:0002289 ! midbrain cerebral aqueduct @@ -146050,9 +145783,7 @@ xref: http://en.wikipedia.org/wiki/Tela_chorioidea_of_fourth_ventricle xref: http://www.snomedbrowser.com/Codes/Details/362321009 xref: TAO:0005158 xref: ZFA:0005158 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle @@ -146075,7 +145806,6 @@ xref: http://en.wikipedia.org/wiki/Tela_chorioidea_of_third_ventricle xref: http://www.snomedbrowser.com/Codes/Details/362320005 xref: TAO:0005159 xref: ZFA:0005159 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002286 ! third ventricle @@ -146122,7 +145852,14 @@ xref: HBA:9512 xref: http://en.wikipedia.org/wiki/Myelencephalon xref: MA:0000205 xref: VHOG:0000456 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004733 ! segmental subdivision of hindbrain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0000955 ! brain +relationship: develops_from UBERON:0001016 ! nervous system +relationship: develops_from UBERON:0001017 ! central nervous system +relationship: develops_from UBERON:0002028 ! hindbrain relationship: develops_from UBERON:0010096 ! future myelencephalon relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio relationship: immediate_transformation_of UBERON:0010096 {evidence="definitional"} ! future myelencephalon @@ -146154,7 +145891,6 @@ xref: CALOHA:TS-2119 xref: EFO:0001406 xref: MAT:0000061 xref: MIAA:0000061 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0016887 ! entire extraembryonic component @@ -146274,6 +146010,9 @@ is_a: UBERON:0004910 ! epithelium of male gonad is_a: UBERON:0005295 ! sex cord intersection_of: UBERON:0005295 ! sex cord intersection_of: part_of UBERON:0000473 ! testis +relationship: develops_from UBERON:0000990 ! reproductive system +relationship: develops_from UBERON:0009117 ! indifferent gonad +relationship: develops_from UBERON:0009196 ! indifferent external genitalia relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad relationship: immediate_transformation_of UBERON:0010141 {source="Bgee:AN"} ! primitive sex cord of indifferent gonad relationship: part_of UBERON:0000473 ! testis @@ -146286,7 +146025,6 @@ synonym: "clitoris skin" EXACT [] xref: FMA:20168 xref: http://www.snomedbrowser.com/Codes/Details/361374002 is_a: UBERON:0000014 ! zone of skin -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002411 ! clitoris @@ -146339,13 +146077,11 @@ xref: MA:0000403 xref: NCIT:C79432 xref: UMLS:C0227956 {source="ncithesaurus:Preputial_Gland"} is_a: UBERON:0000359 ! preputial gland -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland intersection_of: UBERON:0000359 ! preputial gland intersection_of: part_of UBERON:0003101 ! male organism disjoint_from: UBERON:0012327 ! pearly penile papule relationship: capable_of GO:0071834 ! mating pheromone secretion -relationship: never_in_taxon NCBITaxon:9606 {source="ISBN:0123813611"} ! Homo sapiens relationship: part_of UBERON:0000079 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! male reproductive system relationship: part_of UBERON:0001332 ! prepuce of penis relationship: part_of UBERON:0003101 ! male organism @@ -146367,7 +146103,6 @@ is_a: UBERON:0000359 ! preputial gland is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0000359 ! preputial gland intersection_of: part_of UBERON:0003100 ! female organism -relationship: never_in_taxon NCBITaxon:9606 {source="ISBN:0123813611"} ! Homo sapiens relationship: part_of UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0003100 ! female organism @@ -146433,7 +146168,6 @@ xref: TAO:0001072 xref: UMLS:C0229577 {source="ncithesaurus:Thyroid_Gland_Follicle"} xref: ZFA:0001072 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -146471,7 +146205,6 @@ xref: AAO:0011069 xref: http://en.wikipedia.org/wiki/Nephrostome xref: XAO:0000062 is_a: UBERON:0000161 ! orifice -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002120 ! pronephros [Term] @@ -146481,7 +146214,6 @@ def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:00 xref: AAO:0011091 xref: XAO:0000285 is_a: UBERON:0001285 ! nephron -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0002120 ! pronephros relationship: part_of UBERON:0002120 ! pronephros @@ -146496,7 +146228,6 @@ xref: TAO:0001558 xref: XAO:0004105 xref: ZFA:0001558 is_a: UBERON:0001231 ! nephron tubule -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0001231 ! nephron tubule intersection_of: part_of UBERON:0005309 ! pronephric nephron relationship: dubious_for_taxon NCBITaxon:32524 {source="ISBN:0073040584"} ! Amniota @@ -146508,6 +146239,7 @@ name: mammary placode def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596] synonym: "mammary anlage" RELATED [] xref: EMAPA:35541 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge relationship: part_of UBERON:0000076 {source="http://www.ncbi.nlm.nih.gov/pubmed/20484386"} ! external ectoderm @@ -146562,7 +146294,6 @@ def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155] xref: BTO:0000137 is_a: UBERON:0001917 ! endothelium of artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002012 ! pulmonary artery relationship: part_of UBERON:0002012 ! pulmonary artery @@ -146574,7 +146305,6 @@ def: "The collecting duct is the final common path through which urine flows bef xref: AAO:0010390 xref: XAO:0000151 is_a: UBERON:0001232 ! collecting duct of renal tubule -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -146607,7 +146337,6 @@ xref: AAO:0010387 xref: XAO:0000292 xref: ZFA:0005592 is_a: UBERON:0001285 ! nephron -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0000080 ! mesonephros relationship: develops_from UBERON:0005323 {source="XAO"} ! mesonephric mesenchyme @@ -146623,7 +146352,6 @@ xref: EHDAA2:0001132 xref: EMAPA:16745 xref: XAO:0000291 is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -146753,7 +146481,6 @@ name: oral lamina propria def: "A lamina propria that is part of a mucosa of oral region." [OBOL:automatic] synonym: "lamina propria of oral mucosa" EXACT [] xref: EMAPA:26947 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0003343 ! mucosa of oral region @@ -146770,7 +146497,7 @@ xref: Chorioallantoic:membrane xref: http://linkedlifedata.com/resource/umls/id/C0178551 xref: NCIT:C28216 xref: UMLS:C0178551 {source="ncithesaurus:Chorioallantoic_Membrane"} -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005631 ! extraembryonic membrane relationship: capable_of GO:0007585 {source="Hymans"} ! respiratory gaseous exchange by respiratory system relationship: develops_from UBERON:0003124 ! chorion membrane @@ -146792,8 +146519,8 @@ synonym: "lamina choroidocapillaris" RELATED LATIN [http://en.wikipedia.org/wiki xref: FMA:58437 xref: http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid xref: http://www.snomedbrowser.com/Codes/Details/280899009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of UBERON:0001982 ! capillary relationship: part_of UBERON:0013399 ! blood vessel layer of choroid @@ -146867,7 +146594,6 @@ xref: FMA:52761 xref: http://www.snomedbrowser.com/Codes/Details/368926004 xref: MA:0002987 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone @@ -146888,6 +146614,7 @@ xref: EMAPA:32711 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2702 xref: MBA:695 xref: PBA:294021914 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: has_potential_to_develop_into UBERON:0001950 {source="NCBIBook:NBK10047"} ! neocortex @@ -146963,7 +146690,6 @@ xref: EMAPA:37400 {source="MA:th"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1894 xref: MBA:1033 is_a: UBERON:0004003 ! cerebellum hemisphere lobule -relationship: never_in_taxon NCBITaxon:9606 {source="MP"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:9989 ! Rodentia [Term] @@ -147106,10 +146832,8 @@ id: UBERON:0005353 name: spleen perifollicular zone def: "The compartment located between the marginal zone and the red pulp harboring scattered B and T lymphocytes[MP]." [MP:0010245] subset: pheno_slim -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: contributes_to_morphology_of UBERON:0002106 ! spleen -relationship: never_in_taxon NCBITaxon:9989 {source="MP:0002363"} ! Rodentia relationship: part_of UBERON:0002106 ! spleen relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -147118,7 +146842,6 @@ id: UBERON:0005354 name: malleus processus brevis def: "The projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] subset: pheno_slim -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone @@ -147134,7 +146857,6 @@ xref: FMA:52762 xref: http://en.wikipedia.org/wiki/Neck_of_malleus xref: http://www.snomedbrowser.com/Codes/Details/368927008 xref: MA:0002988 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0018664 ! neck of bone element relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone @@ -147205,7 +146927,6 @@ synonym: "region of wall of ventricular system of neuraxis" RELATED [FMA:242770] synonym: "ventricular layer" EXACT [EMAPA:35209] xref: EMAPA:35209 xref: FMA:242770 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer property_value: dc-contributor https://github.com/cmungall relationship: part_of UBERON:0001016 ! nervous system @@ -147405,6 +147126,7 @@ subset: pheno_slim synonym: "hippocampus granular layer" RELATED [] xref: EMAPA:35406 xref: MA:0000954 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002305 ! layer of hippocampus intersection_of: UBERON:0002305 ! layer of hippocampus intersection_of: composed_primarily_of CL:0001033 ! hippocampal granule cell @@ -147668,6 +147390,7 @@ xref: FMA:83146 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2122 xref: MA:0000946 xref: MBA:632 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002304 ! layer of dentate gyrus intersection_of: UBERON:0002304 ! layer of dentate gyrus intersection_of: immediately_deep_to UBERON:0004679 ! dentate gyrus molecular layer @@ -147799,6 +147522,7 @@ xref: MESH:D009831 xref: NCIT:C33205 xref: Olfactory:mucosa xref: UMLS:C0028937 {source="ncithesaurus:Olfactory_Mucosa"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001826 ! nasal cavity mucosa intersection_of: UBERON:0001826 ! nasal cavity mucosa intersection_of: has_part UBERON:0001997 ! olfactory epithelium @@ -147831,7 +147555,6 @@ name: photoreceptor array def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165] synonym: "light-sensitive tissue" EXACT [] xref: FBbt:00004200 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: composed_primarily_of CL:0000210 ! photoreceptor cell @@ -147880,6 +147603,7 @@ xref: NCIT:C33137 xref: NLXANAT:090807 xref: PBA:294021786 xref: UMLS:C1709063 {source="ncithesaurus:Molecular_Layer"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0014935 {source="NBK10047"} ! cerebral cortex marginal layer @@ -147911,6 +147635,7 @@ xref: NCIT:C32557 xref: NLXANAT:090808 xref: PBA:294021800 xref: UMLS:C1517039 {source="ncithesaurus:External_Granular_Layer"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: immediately_deep_to UBERON:0005390 ! cortical layer I @@ -147945,6 +147670,7 @@ xref: NCIT:C32571 xref: NLXANAT:090809 xref: PBA:294021824 xref: UMLS:C1517046 {source="ncithesaurus:External_Pyramidal_Cell_Layer"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: has_part CL:0000598 ! pyramidal neuron @@ -147977,6 +147703,7 @@ xref: NCIT:C32844 xref: NLXANAT:090810 xref: PBA:294021852 xref: UMLS:C1512872 {source="ncithesaurus:Internal_Granular_Layer"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: immediately_deep_to UBERON:0005392 ! cortical layer III @@ -148016,6 +147743,7 @@ xref: NCIT:C32653 xref: NLXANAT:090811 xref: PBA:294021878 xref: UMLS:C1517447 {source="ncithesaurus:Ganglionic_Layer"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: has_part CL:0000598 ! pyramidal neuron @@ -148186,8 +147914,8 @@ xref: http://en.wikipedia.org/wiki/Philtrum xref: http://www.snomedbrowser.com/Codes/Details/362087004 xref: MA:0001577 xref: VHOG:0000862 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001834 ! upper lip relationship: develops_from UBERON:0004068 {source="Wikipedia"} ! medial nasal prominence relationship: has_quality PATO:0000588 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! vestigial @@ -148407,7 +148135,6 @@ xref: TAO:0001284 xref: VHOG:0000655 xref: XAO:0000474 xref: ZFA:0001284 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 {source="ZFA"} ! surface groove disjoint_from: UBERON:0005745 ! optic foramen relationship: located_in UBERON:0003098 {source="EHDAA2"} ! optic stalk @@ -148568,7 +148295,6 @@ intersection_of: has_potential_to_develop_into UBERON:0004709 ! pelvic appendage intersection_of: part_of UBERON:0000154 ! posterior region of body relationship: has_developmental_contribution_from UBERON:0005730 ! pelvic appendage field relationship: has_potential_to_develop_into UBERON:0004709 ! pelvic appendage -relationship: never_in_taxon NCBITaxon:31033 {source="http://www.ncbi.nlm.nih.gov/pubmed/15893975"} ! Takifugu rubripes relationship: part_of UBERON:0000154 ! posterior region of body [Term] @@ -148593,6 +148319,7 @@ xref: TAO:0000085 xref: TAO:0000736 xref: VHOG:0001064 xref: ZFA:0000085 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: part_of UBERON:0005419 ! pectoral appendage bud @@ -148617,6 +148344,7 @@ xref: EMAPA:16892 xref: TAO:0001385 xref: VHOG:0001066 xref: ZFA:0001385 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: part_of UBERON:0005420 ! pelvic appendage bud @@ -148658,7 +148386,6 @@ xref: TAO:0000064 xref: VHOG:0000492 xref: ZFA:0000064 is_a: UBERON:0006598 ! presumptive structure -is_a: UBERON:0010312 ! immature eye intersection_of: UBERON:0006598 ! presumptive structure intersection_of: has_potential_to_develop_into UBERON:0001782 ! pigmented layer of retina relationship: has_potential_to_develop_into UBERON:0001782 ! pigmented layer of retina @@ -148684,7 +148411,6 @@ xref: TAO:0001071 xref: VHOG:0000490 xref: ZFA:0001071 is_a: UBERON:0006598 ! presumptive structure -is_a: UBERON:0010312 ! immature eye intersection_of: UBERON:0006598 ! presumptive structure intersection_of: has_potential_to_develop_into UBERON:0003902 ! retinal neural layer relationship: has_potential_to_develop_into UBERON:0003902 ! retinal neural layer @@ -148722,7 +148448,6 @@ xref: TAO:0002188 xref: ZFA:0001688 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0001048 {source="Obol"} ! primordium -is_a: UBERON:0010312 ! immature eye is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0002342 ! neural crest relationship: part_of UBERON:0000019 {source="ZFA"} ! camera-type eye @@ -148741,7 +148466,6 @@ xref: TAO:0000818 xref: VHOG:0001208 xref: XAO:0004191 xref: ZFA:0000818 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest @@ -148782,6 +148506,7 @@ xref: EHDAA2:0000124 xref: EHDAA:6669 xref: FMA:55142 xref: http://www.snomedbrowser.com/Codes/Details/362474000 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0001021 ! nerve relationship: develops_from UBERON:0001650 {source="EHDAA2"} ! hypoglossal nerve @@ -148881,7 +148606,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0008840 xref: http://www.snomedbrowser.com/Codes/Details/279088007 xref: NCIT:C34126 xref: UMLS:C0008840 {source="ncithesaurus:Chyle_Cistern"} -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009856 ! sac is_a: UBERON:0034944 ! zone of organ relationship: develops_from UBERON:0036260 ! embryonic cisterna chyli @@ -148960,7 +148685,6 @@ xref: EHDAA:218 xref: EMAPA:16070 xref: FMA:85519 xref: VHOG:0000751 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000925 ! endoderm @@ -149099,7 +148823,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1629 xref: http://www.snomedbrowser.com/Codes/Details/361344005 xref: VHOG:0000547 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002240 ! spinal cord [Term] @@ -149144,7 +148867,6 @@ xref: FMA:53154 xref: Foramen:rotundum xref: http://www.snomedbrowser.com/Codes/Details/369439002 xref: VHOG:0001543 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0000377 ! maxillary nerve @@ -149188,6 +148910,7 @@ xref: UMLS:C0230259 {source="ncithesaurus:Greater_Omentum"} xref: VHOG:0000356 is_a: CARO:0000003 is_a: UBERON:0003688 ! omentum +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: attaches_to UBERON:0001164 ! greater curvature of stomach relationship: develops_from UBERON:0002296 {source="Wikipedia"} ! dorsal mesentery relationship: develops_from UBERON:0005602 {source="Wikipedia"} ! dorsal mesogastrium @@ -149263,7 +148986,7 @@ synonym: "lamina hepatica" EXACT [FMA:14655] synonym: "liver cell plate" EXACT [FMA:14655] xref: EMAPA:37880 {source="MA:th"} xref: FMA:14655 -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer relationship: adjacent_to UBERON:0001281 ! hepatic sinusoid relationship: composed_primarily_of CL:0000182 {source="FMA"} ! hepatocyte @@ -149346,7 +149069,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/277708006 xref: RETIRED_EHDAA2:0000884 xref: VHOG:0000790 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove relationship: part_of UBERON:0002082 ! cardiac ventricle @@ -149452,7 +149174,6 @@ xref: http://en.wikipedia.org/wiki/Levator_scapulae_muscle xref: http://www.snomedbrowser.com/Codes/Details/279236008 is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0003897 ! axial muscle -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004518 ! muscle of vertebral column is_a: UBERON:0034908 ! scapular muscle intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -149516,7 +149237,6 @@ xref: NCIT:C33642 xref: Subcapsular:sinus xref: UMLS:C1518051 {source="ncithesaurus:Lymph_Node_Sinus"} xref: UMLS:C1518052 {source="ncithesaurus:Lymph_Node_Subcapsular_Sinus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002006 ! cortex of lymph node @@ -149694,7 +149414,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279264003 xref: ncithesaurus:Sigmoid_Sinus xref: Sigmoid:sinus xref: VHOG:0001337 -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0017635 {source="FMA"} ! paired venous dural sinus relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001586 ! internal jugular vein @@ -149740,7 +149459,6 @@ synonym: "sulcus limitans" BROAD [] xref: BAMS:slim xref: BAMS:slm xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=629 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove disjoint_from: UBERON:0009573 ! sulcus limitans of fourth ventricle relationship: part_of UBERON:0005496 {source="EHDAA2"} ! neural tube lateral wall @@ -149821,7 +149539,6 @@ synonym: "lateral lobe of thymus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "lobe of thymus" EXACT [FMA:71193] xref: FMA:71193 xref: RETIRED_EHDAA2:0002021 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009912 ! anatomical lobe is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0009912 ! anatomical lobe @@ -149893,7 +149610,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/54944003 xref: MA:0002113 xref: NCIT:C102627 xref: VHOG:0001004 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006615 ! venous sinus intersection_of: UBERON:0006615 ! venous sinus intersection_of: located_in UBERON:0002363 ! dura mater @@ -150007,7 +149723,6 @@ xref: VHOG:0000232 xref: XAO:0004154 xref: ZFA:0005046 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000922 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! embryo relationship: part_of UBERON:0002203 {source="ZFA-modified"} ! vasculature of eye @@ -150081,7 +149796,7 @@ xref: EMAPA:16166 xref: TAO:0001435 xref: VHOG:0000513 xref: ZFA:0001435 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001049 ! neural tube [Term] @@ -150325,7 +150040,6 @@ xref: TAO:0000785 xref: VHOG:0000023 xref: ZFA:0000785 is_a: UBERON:0005496 ! neural tube lateral wall -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -150383,7 +150097,7 @@ xref: TAO:0000080 xref: VHOG:0000269 xref: ZFA:0000080 is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest @@ -150940,8 +150654,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279758009 xref: MA:0001210 xref: VHOG:0001344 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001856 ! semicircular duct [Term] @@ -151012,7 +150724,6 @@ xref: EMAPA:17302 xref: FMA:312291 xref: MA:0000272 xref: VHOG:0001477 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0012467 ! enclosed anatomical space relationship: has_quality PATO:0000608 ! closed @@ -151247,8 +150958,8 @@ xref: EMAPA:17362 xref: FMA:295948 xref: MA:0001581 xref: VHOG:0000378 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0005868 {source="cjm"} ! maxillary prominence relationship: part_of UBERON:0003277 {source="EHDAA2"} ! skeleton of upper jaw @@ -151274,8 +150985,8 @@ xref: NCIT:C34264 xref: Primary:palate xref: UMLS:C1268540 {source="ncithesaurus:Primary_Palate"} xref: VHOG:0000362 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007375 ! roof of mouth -is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0007238 {source="EHDAA2-abduced"} ! 1st arch maxillary component relationship: develops_from UBERON:0009714 {source="http://www.indiana.edu/~anat550/hnanim/face/face.html", source="Wikipedia"} ! intermaxillary process relationship: part_of UBERON:0002244 {notes="consider reversing", source="VHOG"} ! premaxilla @@ -151298,7 +151009,6 @@ xref: Rhomboid:muscles xref: VHOG:0001391 is_a: CARO:0000003 is_a: UBERON:0001630 ! muscle organ -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0010985 {source="EHDAA2"} ! rhomboid pre-muscle mass relationship: has_muscle_antagonist UBERON:0001125 {source="dbpedia"} ! serratus ventralis relationship: has_muscle_origin UBERON:0000351 {notes="nuchal ligaments spinous processes of the C7 to T5 vertebrae", source="dbpedia"} ! nuchal ligament @@ -151440,7 +151150,6 @@ def: "Intrinsic membrane that arises from embryonic germ layers and grow to surr xref: EHDAA2:0004714 xref: FMA:305915 xref: http://www.snomedbrowser.com/Codes/Details/362840007 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0004716 ! conceptus relationship: part_of UBERON:0016887 ! entire extraembryonic component @@ -151514,7 +151223,6 @@ name: ultimobranchial body epithelium def: "An epithelium that is part of a ultimobranchial body." [OBOL:automatic] xref: EHDAA2:0002105 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium -is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003092 ! ultimobranchial body relationship: part_of UBERON:0003092 ! ultimobranchial body @@ -151658,7 +151366,7 @@ def: "A dental epithelium that is part of a upper jaw molar." [OBOL:automatic] xref: EHDAA2:0002126 xref: EMAPA:17943 is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015839 ! molar epithelium intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003666 ! upper jaw molar @@ -151672,7 +151380,7 @@ def: "A dental epithelium that is part of a lower jaw molar." [OBOL:automatic] xref: EHDAA2:0001026 xref: EMAPA:17922 is_a: UBERON:0003236 ! epithelium of lower jaw -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015839 ! molar epithelium intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003667 ! lower jaw molar @@ -151723,8 +151431,6 @@ xref: EMAPA:17363 xref: FMA:312465 xref: VHOG:0001040 is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005619 ! secondary palatal shelf relationship: part_of UBERON:0005619 ! secondary palatal shelf @@ -151737,9 +151443,8 @@ xref: EHDAA2:0001500 xref: EMAPA:17643 xref: FMA:313406 xref: VHOG:0001025 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010313 ! neural crest-derived structure -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005620 ! primary palate relationship: develops_from UBERON:0012312 {source="EHDAA2"} ! maxillary process ectoderm @@ -151846,6 +151551,7 @@ id: UBERON:0005667 name: connecting stalk mesoderm xref: EHDAA2:0000314 is_a: UBERON:0003422 ! mesenchyme of umbilical cord +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm relationship: part_of UBERON:0002331 {source="EHDAA2"} ! umbilical cord @@ -151898,7 +151604,6 @@ id: UBERON:0005672 name: right lung endothelium def: "An endothelium that is part of a right lung." [OBOL:automatic] xref: EHDAA2:0001755 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003364 ! epithelium of right lung intersection_of: UBERON:0001986 ! endothelium @@ -151910,7 +151615,6 @@ id: UBERON:0005673 name: left lung endothelium def: "An endothelium that is part of a left lung." [OBOL:automatic] xref: EHDAA2:0000961 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003365 ! epithelium of left lung intersection_of: UBERON:0001986 ! endothelium @@ -152060,7 +151764,6 @@ is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -152078,7 +151781,6 @@ synonym: "lens cavity" BROAD [EHDAA2:0000986] xref: EHDAA2:0000986 xref: EMAPA:17164 xref: VHOG:0000531 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0005426 ! lens vesicle @@ -152307,7 +152009,6 @@ xref: EHDAA:9287 xref: EMAPA:17364 xref: VHOG:0001063 is_a: UBERON:0003323 ! mesenchyme of upper jaw -is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005619 ! secondary palatal shelf relationship: part_of UBERON:0005619 ! secondary palatal shelf @@ -152378,7 +152079,7 @@ xref: EMAPA:17940 is_a: UBERON:0003235 ! epithelium of upper jaw is_a: UBERON:0003355 ! epithelium of incisor is_a: UBERON:0003843 ! dental epithelium -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003450 ! upper jaw incisor relationship: develops_from UBERON:0011642 ! oral epithelium from ectoderm @@ -152393,7 +152094,7 @@ xref: EMAPA:17919 is_a: UBERON:0003236 ! epithelium of lower jaw is_a: UBERON:0003355 ! epithelium of incisor is_a: UBERON:0003843 ! dental epithelium -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003451 ! lower jaw incisor relationship: develops_from UBERON:0011642 ! oral epithelium from ectoderm @@ -152452,9 +152153,7 @@ synonym: "rhombencephalon venous system" RELATED [VHOG:0001322] xref: EHDAA2:0000776 xref: EMAPA:18632 xref: VHOG:0001322 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004582 ! venous system -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004582 ! venous system intersection_of: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002028 ! hindbrain @@ -152476,7 +152175,6 @@ xref: VHOG:0001239 xref: XAO:0000264 xref: ZFA:0000067 is_a: UBERON:0000926 ! mesoderm -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0000926 ! mesoderm intersection_of: has_potential_to_develop_into UBERON:0002120 ! pronephros @@ -152509,6 +152207,7 @@ xref: TAO:0000890 xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001948 ! regional part of spinal cord is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure @@ -152531,7 +152230,6 @@ xref: TAO:0001177 xref: VHOG:0000777 xref: XAO:0000022 xref: ZFA:0001177 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0002240 ! spinal cord @@ -152703,7 +152401,6 @@ comment: the primary reason this term is manifest in uberon to disambiguate from synonym: "tunica externa" RELATED SENSU [ZFA:0001700] xref: TAO:0002245 xref: ZFA:0001700 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005742 ! adventitia relationship: part_of UBERON:0006860 ! swim bladder @@ -152715,7 +152412,6 @@ comment: the primary reason this term is manifest in uberon to disambiguate from synonym: "tunica interna" EXACT [ZFA:0001701] xref: TAO:0002246 xref: ZFA:0001701 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005742 ! adventitia relationship: part_of UBERON:0006860 ! swim bladder @@ -152804,8 +152500,6 @@ xref: Optic:canal xref: TAO:0002025 xref: VHOG:0001408 xref: ZFA:0005428 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0013685 ! foramen of skull @@ -152828,7 +152522,6 @@ xref: EHDAA:5707 xref: http://www.snomedbrowser.com/Codes/Details/343518007 is_a: UBERON:0000476 {inconsistent_with="MP-def", source="EHDAA2"} ! acellular anatomical structure is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0003902 {source="EHDAA2"} ! retinal neural layer relationship: located_in UBERON:0005606 {source="EHDAA2"} ! hyaloid cavity relationship: part_of UBERON:0008816 {source="cjm"} ! embryonic head @@ -152921,7 +152614,6 @@ synonym: "caudal portion of nephrogenic cord" EXACT [OBOL:automatic] synonym: "caudal region of nephrogenic cord" EXACT [OBOL:automatic] synonym: "rear part of nephrogenic cord" EXACT [OBOL:automatic] synonym: "rear portion of nephrogenic cord" EXACT [http://en.wikipedia.org/wiki/Metanephros#Metanephros] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004875 ! nephrogenic cord @@ -152930,7 +152622,6 @@ relationship: part_of UBERON:0004875 ! nephrogenic cord id: UBERON:0005754 name: rostral part of nephrogenic cord def: "The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros." [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004875 ! nephrogenic cord @@ -153012,7 +152703,6 @@ xref: NCIT:C32683 xref: TAO:0005285 xref: UMLS:C0599297 {source="ncithesaurus:Glomerular_Basement_Membrane"} xref: ZFA:0005285 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0000074 ! renal glomerulus @@ -153035,7 +152725,6 @@ xref: NCIT:C32916 xref: TAO:0005286 xref: UMLS:C1235665 {source="ncithesaurus:Lamina_Densa"} xref: ZFA:0005286 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005764 ! acellular membrane intersection_of: UBERON:0005764 ! acellular membrane intersection_of: adjacent_to UBERON:0005788 ! lamina rara interna @@ -153060,7 +152749,6 @@ xref: TAO:0005287 xref: UMLS:C1517719 {source="ncithesaurus:Lamina_Rara_Interna"} xref: ZFA:0005287 is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: adjacent_to UBERON:0001230 ! glomerular capsule intersection_of: part_of UBERON:0005777 ! glomerular basement membrane @@ -153081,7 +152769,6 @@ xref: TAO:0005288 xref: UMLS:C1517718 {source="ncithesaurus:Lamina_Rara_Externa"} xref: ZFA:0005288 is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: adjacent_to UBERON:0001286 ! Bowman's space intersection_of: part_of UBERON:0005777 ! glomerular basement membrane @@ -153151,7 +152838,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0506947 xref: http://www.snomedbrowser.com/Codes/Details/119203005 xref: NCIT:C34027 xref: UMLS:C0506947 {source="ncithesaurus:Aortic_Segment"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000947 ! aorta @@ -153207,7 +152893,6 @@ synonym: "RVLM" EXACT ABBREVIATION [] xref: BTO:0002778 xref: http://en.wikipedia.org/wiki/Rostral_ventrolateral_medulla is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0008217 {source="Wikipedia"} ! regulation of blood pressure relationship: part_of UBERON:0001896 ! medulla oblongata @@ -153249,7 +152934,6 @@ synonym: "ventral tubercle of atlas" EXACT [MP:0010731] xref: FMA:23991 xref: http://www.snomedbrowser.com/Codes/Details/281224005 xref: MA:0002871 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0005814 ! arch of atlas @@ -153289,7 +152973,6 @@ synonym: "anterior tubercle of cervical vertebra" EXACT [FMA:24126] synonym: "tuberculum cervicales anterius vertebrae" EXACT LATIN [FMA:24126, FMA:TA] xref: FMA:24126 xref: http://en.wikipedia.org/wiki/Anterior_tubercle_of_cervical_vertebra -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection disjoint_from: UBERON:0005816 {source="lexical"} ! posterior tubercle of transverse process of cervical vertebra @@ -153304,7 +152987,6 @@ synonym: "posterior tubercle of cervical vertebra" EXACT [FMA:24128] synonym: "tuberculum cervicales posterius vertebrae" EXACT LATIN [FMA:24128, FMA:TA] xref: FMA:24128 xref: http://en.wikipedia.org/wiki/Posterior_tubercle_of_cervical_vertebra -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002413 ! cervical vertebra @@ -153315,7 +152997,6 @@ name: neuraxis flexure def: "An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis." [ZFIN:Curator] xref: ZFA:0005593 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_quality PATO:0000406 ! curved relationship: part_of UBERON:0016879 ! future central nervous system @@ -153836,7 +153517,6 @@ synonym: "processus maxillaris conchae nasalis inferioris" EXACT LATIN [FMA:5474 xref: FMA:54741 xref: http://en.wikipedia.org/wiki/Maxillary_process_of_inferior_nasal_concha is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] @@ -153880,7 +153560,6 @@ xref: EMAPA:37932 {source="MA:th"} xref: FMA:52896 xref: http://en.wikipedia.org/wiki/Palatine_process_of_maxilla xref: http://www.snomedbrowser.com/Codes/Details/368870009 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: part_of UBERON:0012074 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! bony part of hard palate @@ -154050,7 +153729,6 @@ synonym: "lamina dorsolateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Ala synonym: "sensory part of neural tube" RELATED [] xref: Alar:plate xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1370 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: dorsal_to UBERON:0005478 ! sulcus limitans of neural tube relationship: has_part CL:0000101 ! sensory neuron @@ -154150,6 +153828,7 @@ synonym: "mesonephric straight distal segment" RELATED [XAO:0000333] synonym: "straight distal segment" RELATED [XAO:0000333] xref: AAO:0010391 xref: XAO:0000333 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000083 ! mesonephric tubule relationship: develops_from UBERON:0005322 ! mesonephric nephron @@ -154184,6 +153863,7 @@ xref: FBbt:00004640 xref: MAT:0000095 xref: MIAA:0000095 xref: TGMA:0000164 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc @@ -154280,7 +153960,6 @@ xref: FMA:19473 xref: http://en.wikipedia.org/wiki/Excretory_duct_of_seminal_gland xref: http://www.snomedbrowser.com/Codes/Details/279675008 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000998 ! seminal vesicle @@ -154311,9 +153990,7 @@ xref: FBbt:00004522 xref: HAO:0000456 xref: http://en.wikipedia.org/wiki/Labrum_(arthropod_mouthpart) xref: TADS:0000039 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -relationship: never_in_taxon NCBITaxon:57294 ! Pycnogonida relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0000165 ! mouth @@ -154341,7 +154018,6 @@ synonym: "subbrillar sac" NARROW [NCBITaxon:8570] xref: EMAPA:18233 xref: FMA:20291 xref: http://www.snomedbrowser.com/Codes/Details/362531001 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005906 {source="FMA"} ! serous sac relationship: adjacent_to UBERON:0001801 {modified_from="MA"} ! anterior segment of eyeball relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye @@ -154471,7 +154147,6 @@ synonym: "processus ethmoidalis conchae nasalis inferioris" RELATED LATIN [http: xref: FMA:54742 xref: http://en.wikipedia.org/wiki/Ethmoid_boneal_process_of_inferior_nasal_concha is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] @@ -154506,7 +154181,6 @@ xref: XAO:0003033 xref: ZFA:0000550 is_a: UBERON:0000003 ! naris is_a: UBERON:0003102 {source="ZFA"} ! surface structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000003 ! naris intersection_of: connects UBERON:0001707 ! nasal cavity intersection_of: connects UBERON:0013514 ! space surrounding organism @@ -154525,7 +154199,6 @@ xref: EMAPA:17851 xref: FMA:295944 xref: MA:0001322 is_a: UBERON:0000003 ! naris -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005928 ! external naris @@ -154545,8 +154218,6 @@ xref: MA:0000161 xref: NCIT:C32706 xref: UMLS:C0221962 {source="ncithesaurus:Hair_Bulb"} is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002073 ! hair follicle [Term] @@ -154556,8 +154227,6 @@ xref: EMAPA:18772 xref: FMA:294628 xref: MA:0000162 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005932 ! bulb of hair follicle [Term] @@ -154574,6 +154243,7 @@ xref: BTO:0003971 xref: EMAPA:32792 xref: FMA:70935 xref: MA:0000779 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005933 ! hair root sheath relationship: has_part CL:0000312 ! keratinocyte @@ -154606,8 +154276,6 @@ xref: EMAPA:35390 xref: FMA:294634 xref: MA:0000781 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005933 ! hair root sheath [Term] @@ -154687,6 +154355,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1881209 xref: http://www.snomedbrowser.com/Codes/Details/244379003 xref: NCIT:C61368 xref: UMLS:C1881209 {source="ncithesaurus:Infundibulum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle @@ -154775,8 +154444,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/319522000 xref: MA:0003016 xref: NCIT:C32708 xref: UMLS:C0221973 {source="ncithesaurus:Hair_Follicle_Infundibulum"} -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0002073 ! hair follicle @@ -154819,8 +154486,8 @@ xref: MESH:D014129 xref: NCIT:C12803 xref: Trabecular:meshwork xref: UMLS:C0040573 {source="ncithesaurus:Trabecular_Meshwork"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0006205 ! pectineal ligament relationship: has_part CL:0002367 ! trabecular meshwork cell relationship: part_of UBERON:0000019 ! camera-type eye @@ -154847,6 +154514,7 @@ def: "A sheet of somatopleure that grows upward over the embryo and eventually m subset: pheno_slim synonym: "amnionic fold" EXACT [http://placentation.ucsd.edu/glossfs.html] xref: EMAPA:16076 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from UBERON:0004874 {source="ISBN:0073040584"} ! somatopleure relationship: only_in_taxon NCBITaxon:32524 ! Amniota @@ -154857,7 +154525,6 @@ name: tunnel of Corti def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151] subset: pheno_slim xref: EMAPA:37976 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002227 ! spiral organ of cochlea @@ -154866,8 +154533,6 @@ id: UBERON:0005973 name: blood-inner ear barrier def: "The function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier." [MP:0004999] is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -154900,7 +154565,7 @@ synonym: "bulge of hair follicle" EXACT [FMA:70735] xref: BTO:0004904 xref: EMAPA:37876 {source="MA:th"} xref: FMA:70735 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010188 ! protuberance is_a: UBERON:0019204 ! skin epithelium relationship: part_of UBERON:0002073 ! hair follicle @@ -155011,7 +154676,6 @@ xref: EMAPA:37837 {source="MA:th"} xref: FMA:9236 xref: http://www.snomedbrowser.com/Codes/Details/277693004 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium @@ -155032,7 +154696,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/277718001 xref: Musculi:pectinati xref: ZFA:0005809 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002302 ! myocardium of atrium relationship: part_of UBERON:0002302 ! myocardium of atrium @@ -155045,7 +154708,6 @@ synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246] synonym: "posterior right atrial cavity" EXACT [FMA:13246] synonym: "sinus venarum cavarum" EXACT [FMA:13246] xref: FMA:13246 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: contributes_to_morphology_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium @@ -155169,7 +154831,6 @@ synonym: "trabecular layer of the atrium" EXACT [ZFA:0005810] xref: EMAPA:37432 {source="MA:th"} xref: ZFA:0005810 is_a: UBERON:0000440 ! trabecula -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002302 ! myocardium of atrium relationship: contributes_to_morphology_of UBERON:0002302 ! myocardium of atrium @@ -155224,7 +154885,6 @@ synonym: "fibrous ring of aortic valve" EXACT [FMA:9502] xref: EMAPA:37418 {source="MA:th"} xref: FMA:9502 is_a: UBERON:0006008 ! fibrous ring of heart -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002137 ! aortic valve relationship: contributes_to_morphology_of UBERON:0002137 ! aortic valve @@ -155259,7 +154919,6 @@ synonym: "pulmonary valvar anulus" EXACT [FMA:9503] xref: EMAPA:37420 {source="MA:th"} xref: FMA:9503 is_a: UBERON:0006008 ! fibrous ring of heart -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002146 ! pulmonary valve relationship: contributes_to_morphology_of UBERON:0002146 ! pulmonary valve @@ -155283,7 +154942,6 @@ xref: NCIT:C32307 xref: UMLS:C0008484 {source="ncithesaurus:Chordae_Tendineae"} is_a: CARO:0000003 is_a: UBERON:0005983 ! heart layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: attaches_to UBERON:0005484 {source="FMA-abduced"} ! tricuspid valve leaflet relationship: contributes_to_morphology_of UBERON:0002133 ! atrioventricular valve relationship: part_of UBERON:0002133 ! atrioventricular valve @@ -155303,7 +154961,6 @@ xref: FMA:9498 xref: Mitral:annulus is_a: CARO:0000003 is_a: UBERON:0006008 ! fibrous ring of heart -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: attaches_to UBERON:0005996 ! mitral valve cusp intersection_of: part_of UBERON:0002135 ! mitral valve @@ -155334,7 +154991,6 @@ synonym: "tricuspid valvar anulus" EXACT [FMA:9500] xref: EMAPA:37421 {source="MA:th"} xref: FMA:9500 is_a: UBERON:0006008 ! fibrous ring of heart -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002134 ! tricuspid valve relationship: contributes_to_morphology_of UBERON:0002134 ! tricuspid valve @@ -155404,7 +155060,6 @@ synonym: "lower part of bulb of hair follicle" EXACT [FMA:70772] synonym: "lower zone of bulb of hair follicle" EXACT [FMA:70772] xref: EMAPA:37878 {source="MA:th"} xref: FMA:70772 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019204 ! skin epithelium relationship: adjacent_to UBERON:0000412 ! dermal papilla relationship: contributes_to_morphology_of UBERON:0005932 ! bulb of hair follicle @@ -155423,7 +155078,6 @@ xref: FMA:70723 xref: http://linkedlifedata.com/resource/umls/id/C1182701 xref: NCIT:C32709 xref: UMLS:C1182701 {source="ncithesaurus:Hair_Follicle_Isthmus"} -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019204 ! skin epithelium relationship: part_of UBERON:0002073 ! hair follicle @@ -155434,8 +155088,6 @@ def: "The posterior border of the optic nerve foramen." [MP:0010705] subset: pheno_slim synonym: "postoptic pillar" EXACT [ISBN:978-0226870137] xref: EMAPA:37908 {source="MA:th"} -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen @@ -155453,8 +155105,6 @@ xref: DHBA:12659 xref: EMAPA:36557 xref: MA:0002577 xref: Pre-botzinger:complex -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster relationship: composed_primarily_of CL:0000099 ! interneuron relationship: continuous_with UBERON:0000011 ! parasympathetic nervous system @@ -155478,7 +155128,6 @@ xref: EMAPA:37422 {source="MA:th"} xref: FMA:9497 xref: http://en.wikipedia.org/wiki/Fibrous_rings_of_heart is_a: UBERON:0003837 ! thoracic segment connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006444 ! annulus fibrosus intersection_of: UBERON:0006444 ! annulus fibrosus intersection_of: part_of UBERON:0000948 ! heart @@ -155500,8 +155149,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/30822008 xref: NCIT:C33849 xref: UMLS:C0225923 {source="ncithesaurus:Cardiac_Valve_Cusp"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000946 ! cardial valve [Term] @@ -155517,7 +155164,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362506002 xref: Hyaloid:canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0002270 {source="Wikipedia"} ! hyaloid artery relationship: located_in UBERON:0001798 ! vitreous body relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball @@ -155891,6 +155538,7 @@ id: UBERON:0006058 name: multi-limb segment region def: "A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions)." [https://orcid.org/0000-0002-6601-2165] subset: non_informative +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010758 ! subdivision of organism along appendicular axis relationship: has_part UBERON:0002529 ! limb segment @@ -155908,9 +155556,9 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228120 xref: http://www.snomedbrowser.com/Codes/Details/279275004 xref: NCIT:C12890 xref: UMLS:C0228120 {source="ncithesaurus:Falx_Cerebri"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0010090 ! future falx cerebri relationship: immediate_transformation_of UBERON:0010090 {evidence="definitional"} ! future falx cerebri relationship: part_of UBERON:0002363 ! dura mater @@ -155925,7 +155573,6 @@ synonym: "cardiac conotruncus" EXACT [] synonym: "rostral half of bulbus cordis" EXACT [EMAPA:16221] xref: EMAPA:16338 xref: VHOG:0000437 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004706 ! bulbus cordis @@ -155940,7 +155587,6 @@ xref: AAO:0000739 xref: FMA:24530 xref: NCIT:C116112 xref: Structure_of_individual_vertebrae -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002412 ! vertebra @@ -155972,6 +155618,7 @@ name: cartilaginous neural arch def: "One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch." [BTO:0001763] synonym: "neural arch primordium" RELATED [] xref: BTO:0001763 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010358 ! arch of centrum of vertebra relationship: has_part UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0000922 ! embryo @@ -155990,7 +155637,6 @@ xref: TAO:0000519 xref: ZFA:0000519 is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010358 ! arch of centrum of vertebra -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0001095 ! caudal vertebra [Term] @@ -156174,7 +155820,6 @@ synonym: "vertebral region" RELATED [] synonym: "vertebral series" EXACT [] synonym: "vertebral subdivision" RELATED [] xref: FMA:16201 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: subdivision_of UBERON:0001130 ! vertebral column @@ -156220,7 +155865,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245391004 xref: NCIT:C32648 xref: UMLS:C0227544 {source="ncithesaurus:Gallbladder_Fundus"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002110 ! gall bladder [Term] @@ -156247,8 +155891,8 @@ xref: MA:0001694 xref: NCIT:C48939 xref: UMLS:C0447584 {source="ncithesaurus:Bladder_Fundus"} xref: VHOG:0001184 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder relationship: develops_from UBERON:0005760 {source="EHDAA2-modified"} ! urorectal septum relationship: develops_from UBERON:0009845 {source="EHDAA2"} ! urogenital sinus mesenchyme @@ -156277,7 +155921,6 @@ xref: NLXANAT:1005006 xref: PBA:128012080 xref: Perirhinal:cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0001893 ! telencephalon @@ -156369,8 +156012,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0152304 xref: http://www.snomedbrowser.com/Codes/Details/362336007 xref: UMLS:C0152304 {source="BIRNLEX:1194"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 ! parietal lobe [Term] @@ -156444,8 +156085,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0152283 xref: http://www.snomedbrowser.com/Codes/Details/362315005 xref: UMLS:C0152283 {source="BIRNLEX:1292"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002285 ! telencephalic ventricle [Term] @@ -156527,8 +156166,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0152303 xref: http://www.snomedbrowser.com/Codes/Details/279168006 xref: UMLS:C0152303 {source="BIRNLEX:1450"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex @@ -156554,8 +156191,8 @@ synonym: "principle auditory receptive areas" EXACT [BIRNLEX:1582] xref: BIRNLEX:1582 xref: BIRNLEX:1774 xref: FMA:68638 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1582"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1582"} xref: http://linkedlifedata.com/resource/umls/id/C1272502 xref: UMLS:C1272502 {source="BIRNLEX:1774"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area @@ -156786,9 +156423,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279779009 xref: MA:0003176 xref: UMLS:C0009198 {source="BIRNLEX:2553"} xref: UMLS:C0458767 {source="BIRNLEX:2553"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001844 ! cochlea [Term] @@ -157093,7 +156728,6 @@ synonym: "regional part of diagonal band" EXACT [NLXANAT:20090302] xref: FMA:77610 xref: NLXANAT:20090302 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002741 {source="NIFSTD"} ! diagonal band of Broca @@ -157135,7 +156769,6 @@ xref: FMA:5914 xref: http://en.wikipedia.org/wiki/Nervous_system_fiber xref: http://www.snomedbrowser.com/Codes/Details/88545005 xref: MESH:A08.663.542 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure union_of: UBERON:0006135 ! myelinated nerve fiber union_of: UBERON:0006136 ! unmyelinated nerve fiber @@ -157161,8 +156794,6 @@ intersection_of: UBERON:0006134 ! nerve fiber intersection_of: has_part GO:0043209 ! myelin sheath disjoint_from: UBERON:0006136 ! unmyelinated nerve fiber relationship: has_part GO:0043209 ! myelin sheath -relationship: never_in_taxon NCBITaxon:117569 ! Hyperoartia -relationship: never_in_taxon NCBITaxon:7762 ! Myxinidae relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: present_in_taxon NCBITaxon:7776 ! Gnathostomata @@ -157356,7 +156987,6 @@ id: UBERON:0006170 name: mesonephric capsule def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864] is_a: UBERON:0002015 ! kidney capsule -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -157367,7 +156997,6 @@ name: renal sinus def: "A hollowed out area on the medial margin of the kidney. The renal sinus opens at the renal hilum; it contains the renal aa. and vv., major calyces and renal pelvis, perirenal fat." [http://anatomy.uams.edu/anatomyhtml/kidney.html] xref: FMA:15611 xref: http://www.snomedbrowser.com/Codes/Details/362222000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0002113 ! kidney @@ -157377,8 +157006,8 @@ name: rectal diverticulum def: "The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior." [GO:0039009] synonym: "rectal diverticula" RELATED PLURAL [XAO:0001015] xref: XAO:0001015 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: continuous_with UBERON:0000163 ! embryonic cloaca relationship: continuous_with UBERON:0002120 ! pronephros relationship: develops_from UBERON:0000163 ! embryonic cloaca @@ -157517,7 +157146,6 @@ xref: MA:0003054 xref: NCIT:C77673 xref: UMLS:C2698201 {source="ncithesaurus:Auricular_Vein"} is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: drains UBERON:0001691 ! external ear relationship: part_of UBERON:0000033 ! head @@ -157614,7 +157242,6 @@ synonym: "Vesalius' ligament" EXACT [FMA:19855] xref: FMA:19855 xref: http://www.snomedbrowser.com/Codes/Details/361900000 xref: Inguinal:ligament -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005172 ! abdomen element relationship: part_of UBERON:0005442 ! abdominal external oblique muscle @@ -157629,7 +157256,6 @@ synonym: "ligamentum pectineale" EXACT [FMA:20188] xref: FMA:20188 xref: http://www.snomedbrowser.com/Codes/Details/256661003 xref: Pectineal:ligament -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006204 ! inguinal ligament @@ -157641,7 +157267,6 @@ subset: pheno_slim synonym: "anterior chamber angle" EXACT [FMA:58577] xref: FMA:58577 xref: http://www.snomedbrowser.com/Codes/Details/244498000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000015 ! non-material anatomical boundary relationship: part_of UBERON:0003956 ! aqueous drainage system @@ -157664,7 +157289,6 @@ xref: EHDAA:2592 xref: EMAPA:16827 xref: VHOG:0000502 is_a: UBERON:0004142 ! outflow tract septum -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002333 ! pulmonary trunk intersection_of: adjacent_to UBERON:0005805 ! dorsal aorta @@ -157703,7 +157327,6 @@ xref: VHOG:0001124 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015048 ! basioccipital endochondral element intersection_of: UBERON:0015048 ! basioccipital endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -157759,7 +157382,6 @@ xref: EHDAA2:0000195 xref: EHDAA:766 xref: EMAPA:16693 xref: VHOG:0001405 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000948 ! heart @@ -157847,7 +157469,6 @@ xref: EHDAA:5105 xref: EHDAA:6534 xref: EMAPA:16884 xref: RETIRED_EHDAA2:0000239 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0016566 {source="EHDAA2"} ! pit relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0008814 ! pharyngeal arch system @@ -157886,7 +157507,6 @@ subset: emapa_ehdaa2 xref: EHDAA:1267 xref: EMAPA:16342 xref: RETIRED_EHDAA2:0000268 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002081 ! cardiac atrium @@ -157897,7 +157517,6 @@ subset: emapa_ehdaa2 xref: EHDAA2:0000340 xref: EHDAA:6002 xref: EMAPA:17749 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -157911,7 +157530,6 @@ xref: EHDAA:3476 xref: EMAPA:16901 xref: VHOG:0000808 is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: channel_for UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0003993 ! interventricular foramen of CNS @@ -157946,7 +157564,6 @@ xref: EHDAA:2945 xref: EMAPA:16704 xref: MA:0001570 xref: RETIRED_EHDAA2:0000412 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003283 ! mesentery of oesophagus @@ -158017,7 +157634,6 @@ xref: EHDAA:2925 xref: EMAPA:17845 is_a: UBERON:0003314 ! eye mesenchyme is_a: UBERON:0005865 ! pre-muscle condensation -is_a: UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0003314 {source="EHDAA2", source="ISBN:0781772214"} ! eye mesenchyme relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye @@ -158093,7 +157709,6 @@ xref: EHDAA2:0000569 xref: EHDAA:526 xref: EMAPA:16363 xref: VHOG:0000291 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0001041 ! foregut @@ -158236,7 +157851,6 @@ synonym: "glossopharyngeal preganglion" RELATED [EMAPA:16661] xref: EHDAA:1479 xref: EMAPA:16661 xref: RETIRED_EHDAA2:0000713 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001714 ! cranial ganglion @@ -158307,7 +157921,6 @@ xref: EMAPA:18029 xref: VHOG:0000964 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010377 ! mesenchyme from somatopleure is_a: UBERON:0015054 ! iliac endochondral element intersection_of: UBERON:0015054 ! iliac endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -158356,9 +157969,7 @@ xref: Infundibular:recess is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010371 ! ecto-epithelium -is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0003309 {source="EHDAA2"} ! floor plate of diencephalon relationship: develops_from UBERON:0034876 {source="EHDAA2"} ! future neurohypophysis relationship: part_of UBERON:0002286 {source="EMAPA"} ! third ventricle @@ -158400,7 +158011,6 @@ xref: EHDAA:4761 xref: EMAPA:16676 xref: EMAPA:17170 xref: VHOG:0000534 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012467 {source="EHDAA2"} ! enclosed anatomical space relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000966 ! retina @@ -158434,7 +158044,6 @@ xref: EMAPA:18348 xref: VHOG:0000962 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation -is_a: UBERON:0010377 ! mesenchyme from somatopleure is_a: UBERON:0015056 ! ischial endochondral element intersection_of: UBERON:0015056 ! ischial endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -158471,7 +158080,7 @@ xref: NCIT:C34198 xref: RETIRED_EHDAA2:0000909 xref: UMLS:C1283960 {source="ncithesaurus:Laryngotracheal_Tube"} xref: VHOG:0001404 -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove relationship: has_potential_to_develop_into UBERON:0001737 ! larynx relationship: has_potential_to_develop_into UBERON:0003126 ! trachea @@ -158491,7 +158100,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1517769 xref: NCIT:C34201 xref: UMLS:C1517769 {source="ncithesaurus:Lens_Pit"} xref: VHOG:0000806 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0016566 {source="EHDAA2"} ! pit relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo @@ -158539,6 +158147,7 @@ xref: EHDAA2:0001055 xref: EHDAA:9026 xref: EMAPA:17826 xref: VHOG:0000958 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015018 ! malleus endochondral element is_a: UBERON:0035132 ! auditory ossicle pre-cartilage element intersection_of: UBERON:0015018 ! malleus endochondral element @@ -158570,7 +158179,6 @@ xref: EHDAA:534 xref: EMAPA:16258 xref: RETIRED_EHDAA2:0001205 xref: VHOG:0000592 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001555 ! digestive tract @@ -158608,9 +158216,9 @@ xref: Lacrimal:groove xref: NCIT:C34218 xref: UMLS:C1513875 {source="ncithesaurus:Nasolacrimal_Groove"} xref: VHOG:0001307 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019306 ! nose epithelium relationship: adjacent_to UBERON:0004067 ! lateral nasal prominence relationship: adjacent_to UBERON:0005868 ! maxillary prominence @@ -158672,7 +158280,6 @@ xref: EMAPA:16199 xref: EMAPA:16325 xref: RETIRED_EHDAA2:0001316 xref: VHOG:0001162 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove relationship: part_of UBERON:0003071 ! eye primordium @@ -158685,7 +158292,6 @@ xref: EHDAA2:0001328 xref: EHDAA:10648 xref: EMAPA:18717 xref: http://www.snomedbrowser.com/Codes/Details/280546005 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: part_of UBERON:0001697 ! orbit of skull @@ -158700,7 +158306,6 @@ xref: EHDAA2:0001331 xref: EHDAA:5882 xref: EMAPA:17200 xref: VHOG:0001352 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: developmentally_replaces UBERON:0009672 ! oronasal membrane relationship: part_of UBERON:0000166 ! oral opening @@ -158756,7 +158361,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/361428002 xref: NCIT:C34246 xref: UMLS:C1283967 {source="ncithesaurus:Pericardioperitoneal_Canal"} xref: VHOG:0001498 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: located_in UBERON:0002323 ! coelemic cavity lumen relationship: only_in_taxon NCBITaxon:7711 ! Chordata @@ -158770,7 +158374,6 @@ xref: EHDAA:4751 xref: EMAPA:17167 xref: RETIRED_EHDAA2:0001444 is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0010312 ! immature eye relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo @@ -158843,6 +158446,7 @@ xref: EHDAA2:0001484 xref: EHDAA:60 xref: EMAPA:16048 xref: VHOG:0000980 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0016888 {source="EHDAA2"} ! transitional anatomical structure relationship: adjacent_to UBERON:0000087 ! inner cell mass @@ -158934,7 +158538,6 @@ xref: EMAPA:18349 xref: VHOG:0000965 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation -is_a: UBERON:0010377 ! mesenchyme from somatopleure is_a: UBERON:0015055 ! pubic endochondral element intersection_of: UBERON:0015055 ! pubic endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -159074,10 +158677,10 @@ xref: EHDAA2:0001904 xref: EHDAA:3003 xref: EMAPA:18535 xref: XAO:0000326 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 {source="XAO"} ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0004872 {source="XAO"} ! splanchnic layer of lateral plate mesoderm relationship: part_of UBERON:0005602 {source="EHDAA2-modified"} ! dorsal mesogastrium @@ -159183,8 +158786,6 @@ xref: EHDAA:5474 xref: EMAPA:16915 xref: VHOG:0000809 is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: channel_for UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0003993 ! interventricular foramen of CNS @@ -159227,7 +158828,6 @@ xref: EMAPA:18235 xref: FMA:321625 xref: http://en.wikipedia.org/wiki/Tunica_vasculosa_lentis xref: VHOG:0000978 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005607 ! hyaloid vascular plexus @@ -159316,7 +158916,6 @@ id: UBERON:0006312 name: ocular refractive media def: "Body substance in a liquid or semi-solid state in the eyeball which serves to refract light." [http://orcid.org/0000-0002-6601-2165] xref: MA:0001911 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0000019 ! camera-type eye @@ -159519,7 +159118,6 @@ xref: MA:0001761 is_a: UBERON:0001994 ! hyaline cartilage tissue is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] @@ -159683,7 +159281,6 @@ name: lateral ventricle choroid plexus stroma def: "A choroid plexus stroma that is part of a lateral ventricle." [OBOL:automatic] xref: MA:0000963 is_a: UBERON:0005206 ! choroid plexus stroma -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle @@ -159707,7 +159304,6 @@ name: fourth ventricle choroid plexus stroma def: "A choroid plexus stroma that is part of a fourth ventricle." [OBOL:automatic] xref: MA:0000985 is_a: UBERON:0005206 ! choroid plexus stroma -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle @@ -159874,7 +159470,6 @@ def: "The vasa hyaloidea propria and tunica vasculosa lentis are small branches xref: EMAPA:18236 xref: FMA:312395 xref: MA:0001285 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005607 {source="EMAPA"} ! hyaloid vascular plexus @@ -159894,7 +159489,6 @@ def: "A large swelling on the dorsal surface of the tongue at the junction betwe synonym: "intermolar eminence" EXACT [MA:0001590] xref: EMAPA:18273 xref: MA:0001590 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009471 ! dorsum of tongue @@ -159935,7 +159529,7 @@ synonym: "part of afferent arteriole forming juxtaglomerular complex" EXACT [MA: synonym: "renin-producing cells" RELATED [MA:0002580] xref: EMAPA:28269 xref: MA:0002580 -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus relationship: part_of UBERON:0004639 ! renal afferent arteriole @@ -159992,7 +159586,6 @@ intersection_of: UBERON:0001037 ! strand of hair intersection_of: part_of UBERON:0011933 ! vibrissa unit disjoint_from: UBERON:0011931 ! nasal hair relationship: capable_of_part_of GO:0050975 ! sensory perception of touch -relationship: never_in_taxon NCBITaxon:9606 {source="Skinbase"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0011933 ! vibrissa unit @@ -160068,11 +159661,9 @@ xref: EMAPA:29769 xref: http://en.wikipedia.org/wiki/Baculum xref: http://www.snomedbrowser.com/Codes/Details/27962002 xref: MA:0000406 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007719 ! bone of reproductive organ intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0000989 ! penis -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0000989 ! penis @@ -160108,13 +159699,11 @@ synonym: "clitoris bone" EXACT [] synonym: "os clitoridis" EXACT [http://en.wikipedia.org/wiki/Baculum] xref: EMAPA:30823 xref: MA:0000387 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007719 ! bone of reproductive organ intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002411 ! clitoris relationship: contributes_to_morphology_of UBERON:0001434 ! skeletal system relationship: contributes_to_morphology_of UBERON:0002411 ! clitoris -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0002411 ! clitoris relationship: sexually_homologous_to UBERON:0006435 ! os penis @@ -160126,7 +159715,6 @@ synonym: "hepatic recess" EXACT [] synonym: "subhepatic space" EXACT [FMA:20676] xref: FMA:20676 xref: http://www.snomedbrowser.com/Codes/Details/36051002 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001179 {source="MA-abduced"} ! peritoneal cavity @@ -160743,7 +160331,9 @@ relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0006479 name: Brodmann (1909) area 38 -def: "Brodmann area 38, also BA38 or temporopolar area 38 (H), is part of the temporal cortex in the human brain. BA 38 is at the anterior end of the temporal lobe, known as the temporal pole. BA38 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the most rostral portions of the superior temporal gyrus and the middle temporal gyrus. Cytoarchitecturally it is bounded caudally by the inferior temporal area 20, the middle temporal area 21, the superior temporal area 22 and the ectorhinal area 36 (Brodmann-1909). Cytoarchitectonic and chemoarchitectonic studies find that it contains at least seven subareas, one of which, TG, is unique to humans. 'The functional significance of this area TG is not known, but it may bind complex, highly processed perceptual inputs to visceral emotional responses.' This area is among the earliest affected by Alzheimer's disease and the earliest involved at the start of temporal lobe seizures. [." [http://en.wikipedia.org/wiki/Brodmann_area_38] +def: "Brodmann area 38, also BA38 or temporopolar area 38 (H), is part of the temporal cortex in the human brain. BA 38 is at the anterior end of the temporal lobe, known as the temporal pole. BA38 is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located primarily in the most rostral portions of the superior temporal gyrus and the middle temporal gyrus. Cytoarchitecturally it is bounded caudally by the inferior temporal area 20, the middle temporal area 21, the superior temporal area 22 and the ectorhinal area 36 (Brodmann-1909). Cytoarchitectonic and chemoarchitectonic studies find that it contains at least seven subareas, one of which, TG, is unique to humans. 'The functional significance of this area TG is not known, but it may bind complex, highly processed perceptual inputs to visceral emotional responses.' This area is among the earliest affected by Alzheimer's disease and the earliest involved at the start of temporal lobe seizures." [http://en.wikipedia.org/wiki/Brodmann_area_38, http://www.ncbi.nlm.nih.gov/pubmed/22421014] +synonym: "anterior end of the temporal lobe" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] +synonym: "anterior temporal lobe" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] synonym: "area 38 of Brodmann" EXACT [FMA:68635] synonym: "area 38 of Brodmann-1909" EXACT [BIRNLEX:1771] synonym: "area temporopolaris" EXACT [BIRNLEX:1771] @@ -160753,7 +160343,9 @@ synonym: "BA38" EXACT ABBREVIATION [] synonym: "Brodmann (1909) area 38" EXACT [BIRNLEX:1771] synonym: "Brodmann area 38" EXACT [FMA:68635] synonym: "Brodmann area 38, temporopolar" EXACT [BIRNLEX:1771] +synonym: "temporal pole" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] synonym: "temporopolar area 38" EXACT [FMA:68635] +synonym: "temporopolar area 38 (H)" EXACT [WikipediaVersioned:Brodmann_area_38&oldid=984922149] xref: BIRNLEX:1771 xref: Brodmann_area:38 xref: FMA:68635 @@ -161046,7 +160638,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279534007 xref: MA:0001760 is_a: UBERON:0001996 {source="MA"} ! elastic cartilage tissue is_a: UBERON:0003583 ! larynx connective tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001740 {source="MA"} ! arytenoid cartilage [Term] @@ -161058,8 +160649,6 @@ synonym: "osseous cochlear canal" EXACT [FMA:75666] xref: EMAPA:35621 xref: FMA:75666 xref: MA:0001183 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea @@ -161073,8 +160662,6 @@ synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290] xref: EMAPA:37526 {source="MA:th"} xref: FMA:61290 xref: MA:0001235 -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001352 ! external acoustic meatus @@ -161228,7 +160815,6 @@ xref: MA:0000369 xref: MESH:D007670 xref: NCIT:C12927 xref: UMLS:C0022651 {source="ncithesaurus:Renal_Calyx"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis @@ -161261,7 +160847,6 @@ xref: BTO:0000136 xref: CALOHA:TS-1296 xref: EMAPA:32692 xref: MA:0000416 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung @@ -161271,7 +160856,6 @@ id: UBERON:0006525 name: left lung alveolar system xref: EMAPA:19001 xref: MA:0001775 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006524 ! alveolar system @@ -161281,7 +160865,6 @@ id: UBERON:0006526 name: right lung alveolar system xref: EMAPA:35717 xref: MA:0001784 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006524 ! alveolar system @@ -161460,7 +161043,6 @@ subset: vertebrate_core xref: EMAPA:28457 xref: TAO:0005305 xref: ZFA:0005305 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -161473,7 +161055,6 @@ name: renal duct def: "A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9] xref: TAO:0005289 xref: ZFA:0005289 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002113 ! kidney @@ -161691,7 +161272,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245445008 xref: NCIT:C34245 xref: Pectinate:line xref: UMLS:C0821671 {source="ncithesaurus:Pectinate_Line"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:8410024 ! intestinal junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0000931 ! proctodeum @@ -161739,7 +161319,6 @@ synonym: "calcareous statoliths" NARROW [] is_a: UBERON:0000476 ! acellular anatomical structure relationship: capable_of_part_of GO:0009590 ! detection of gravity relationship: has_quality PATO:0002444 ! mineralized -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0006583 ! statocyst [Term] @@ -161753,7 +161332,6 @@ xref: http://en.wikipedia.org/wiki/Statocyst is_a: UBERON:0000020 ! sense organ relationship: capable_of GO:0050973 ! detection of mechanical stimulus involved in equilibrioception relationship: dubious_for_taxon NCBITaxon:110815 {source="Wikipedia"} ! Xenoturbella -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: present_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha relationship: present_in_taxon NCBITaxon:6073 ! Cnidaria relationship: present_in_taxon NCBITaxon:6544 ! Bivalvia @@ -161768,7 +161346,6 @@ synonym: "balance organ" EXACT [https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2519 xref: http://linkedlifedata.com/resource/umls/id/C0682674 xref: UMLS:C0682674 {source="BIRNLEX:2519"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0004681 ! vestibular system @@ -161820,7 +161397,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230247 xref: http://www.snomedbrowser.com/Codes/Details/262209009 xref: NCIT:C34008 xref: UMLS:C0230247 {source="ncithesaurus:Round_Ligament_of_the_Liver"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006592 ! transformed vein is_a: UBERON:0013139 ! ligament of liver disjoint_from: UBERON:0006589 ! round ligament of uterus @@ -161866,7 +161442,11 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 ! remnant of embryonic structure intersection_of: UBERON:0006590 ! remnant of embryonic structure intersection_of: immediate_transformation_of UBERON:0001637 ! artery +relationship: develops_from UBERON:0001009 ! circulatory system relationship: develops_from UBERON:0001637 ! artery +relationship: develops_from UBERON:0004535 ! cardiovascular system +relationship: develops_from UBERON:0004537 ! blood vasculature +relationship: develops_from UBERON:0004572 ! arterial system relationship: immediate_transformation_of UBERON:0001637 ! artery [Term] @@ -161878,7 +161458,11 @@ is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 ! remnant of embryonic structure intersection_of: UBERON:0006590 ! remnant of embryonic structure intersection_of: immediate_transformation_of UBERON:0001638 ! vein +relationship: develops_from UBERON:0001009 ! circulatory system relationship: develops_from UBERON:0001638 ! vein +relationship: develops_from UBERON:0004535 ! cardiovascular system +relationship: develops_from UBERON:0004537 ! blood vasculature +relationship: develops_from UBERON:0004582 ! venous system relationship: immediate_transformation_of UBERON:0001638 ! vein [Term] @@ -161899,7 +161483,6 @@ synonym: "plicae gubernatrix" RELATED PLURAL [http://www.drugs.com/dict/genitoin xref: BTO:0002814 xref: http://www.snomedbrowser.com/Codes/Details/300350000 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008843 ! gubernaculum testis @@ -161954,7 +161537,6 @@ is_a: UBERON:0011597 ! bone of upper jaw is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0004752 {source="ZFA"} ! palatoquadrate cartilage relationship: in_lateral_side_of UBERON:0003277 ! skeleton of upper jaw -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium relationship: part_of UBERON:0003277 ! skeleton of upper jaw @@ -162083,7 +161665,6 @@ xref: Symphysis:menti xref: TAO:0001851 xref: ZFA:0005488 is_a: UBERON:0002216 {source="FMA"} ! symphysis -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0002213 ! cartilaginous joint intersection_of: connects UBERON:0004742 {minCardinality="2", maxCardinality="2"} ! dentary relationship: connects UBERON:0004742 {notes="connects adjacent mandibles"} ! dentary @@ -162119,7 +161700,6 @@ xref: BTO:0002018 xref: FMA:20172 xref: http://en.wikipedia.org/wiki/Corpus_cavernosum_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/16657007 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006609 ! corpus cavernosum intersection_of: UBERON:0006609 ! corpus cavernosum @@ -162160,7 +161740,6 @@ synonym: "shell" RELATED [BTO:0004659] xref: BTO:0004659 xref: http://en.wikipedia.org/wiki/Exoskeleton is_a: UBERON:0000477 ! anatomical cluster -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires relationship: part_of UBERON:0002416 ! integumental system [Term] @@ -162171,7 +161750,6 @@ subset: grouping_class xref: http://en.wikipedia.org/wiki/Seashell xref: ncithesaurus:Shell is_a: UBERON:0000477 ! anatomical cluster -relationship: never_in_taxon NCBITaxon:32525 ! Theria relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0002416 ! integumental system @@ -162261,7 +161839,6 @@ xref: FMA:77110 xref: http://www.snomedbrowser.com/Codes/Details/305223006 xref: MA:0002955 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium @@ -162416,7 +161993,6 @@ xref: EHDAA2:0004519 xref: EMAPA:19212 xref: FMA:14812 xref: galen:CeliacTrunk -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001640 ! celiac artery @@ -162434,7 +162010,14 @@ xref: http://en.wikipedia.org/wiki/Median_umbilical_ligament xref: http://www.snomedbrowser.com/Codes/Details/89583000 is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +relationship: develops_from NCBITaxon:6072 ! Eumetazoa +relationship: develops_from UBERON:0001008 ! renal system +relationship: develops_from UBERON:0001255 ! urinary bladder +relationship: develops_from UBERON:0001556 ! lower urinary tract relationship: develops_from UBERON:0002068 ! urachus +relationship: develops_from UBERON:0002100 ! trunk +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: immediate_transformation_of UBERON:0002068 ! urachus relationship: part_of UBERON:0000916 ! abdomen @@ -162450,7 +162033,6 @@ xref: FMA:18248 xref: http://en.wikipedia.org/wiki/Crus_of_penis xref: http://www.snomedbrowser.com/Codes/Details/362270006 xref: MA:0003255 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0018533 ! crus of penis or clitoris intersection_of: UBERON:0018533 ! crus of penis or clitoris @@ -162472,7 +162054,6 @@ xref: EMAPA:30821 xref: FMA:20175 xref: http://en.wikipedia.org/wiki/Crus_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/279860002 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0018533 ! crus of penis or clitoris intersection_of: UBERON:0018533 ! crus of penis or clitoris @@ -162515,7 +162096,6 @@ synonym: "uterine tubal muscularis" EXACT [FMA:18318] xref: EMAPA:29046 xref: FMA:18318 xref: http://www.snomedbrowser.com/Codes/Details/259488000 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -162558,7 +162138,6 @@ xref: EMAPA:30522 xref: FMA:18630 xref: http://en.wikipedia.org/wiki/Tunica_albuginea_(ovaries) xref: http://www.snomedbrowser.com/Codes/Details/258409003 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006610 ! tunica albuginea intersection_of: UBERON:0006610 ! tunica albuginea intersection_of: part_of UBERON:0000992 ! ovary @@ -162572,7 +162151,6 @@ def: "An adventitia that is part of a epididymis." [OBOL:automatic] synonym: "epididymis adventitia" EXACT [FMA:19136] xref: EMAPA:30443 xref: FMA:19136 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia @@ -162585,7 +162163,6 @@ name: muscle layer of epididymis def: "A muscle layer that is part of a epididymis." [OBOL:automatic] xref: EMAPA:30747 xref: FMA:19149 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -162622,7 +162199,6 @@ synonym: "tunica adventitia glandulae vesiculosae" EXACT LATIN [FMA:19403, FMA:T xref: EMAPA:29775 xref: FMA:19403 xref: http://www.snomedbrowser.com/Codes/Details/252406002 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia @@ -162719,7 +162295,6 @@ synonym: "vaginal muscularis" EXACT [] xref: EMAPA:30997 xref: FMA:19976 xref: http://www.snomedbrowser.com/Codes/Details/253069005 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -162753,7 +162328,7 @@ relationship: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0006654 name: perineal body -def: "The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle . It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder." [http://en.wikipedia.org/wiki/Perineal_body] +def: "The perineal body (or central tendon of perineum) is a pyramidal fibromuscular mass in the middle line of the perineum at the junction between the urogenital triangle and the anal triangle. It is found in both males and females. In males, it is found between the bulb of penis and the anus; in females, is found between the vagina and anus, and about 1.25 cm in front of the latter. The perineal body is essential for the integrity of the pelvic floor, particularly in females. Its rupture during delivery leads to widening of the gap between the anterior free borders of levator ani muscle of both sides, thus predisposing the woman to prolapse of the uterus, rectum, or even the urinary bladder." [http://en.wikipedia.org/wiki/Perineal_body, https://orcid.org/0000-0002-2825-0621] synonym: "central tendinous point" RELATED [http://en.wikipedia.org/wiki/Perineal_body] synonym: "central tendinous point of the perineum" RELATED [http://en.wikipedia.org/wiki/Perineal_body] synonym: "central tendon of perineum" EXACT [FMA:20274] @@ -162764,7 +162339,8 @@ xref: EMAPA:17892 xref: FMA:20274 xref: http://www.snomedbrowser.com/Codes/Details/367754000 xref: Perineal:body -is_a: UBERON:0007651 ! anatomical junction +is_a: UBERON:0000043 ! tendon +is_a: UBERON:0003838 ! abdominal segment connective tissue relationship: part_of UBERON:0002356 ! perineum [Term] @@ -162776,8 +162352,8 @@ synonym: "septum scroti" EXACT LATIN [] xref: EMAPA:29745 xref: FMA:20729 xref: http://www.snomedbrowser.com/Codes/Details/279591002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: adjacent_to UBERON:0035105 ! sac of scrotum @@ -162957,7 +162533,6 @@ xref: http://en.wikipedia.org/wiki/Greater_palatine_artery xref: http://www.snomedbrowser.com/Codes/Details/312163002 xref: MA:0001993 is_a: UBERON:0001637 ! artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -163007,7 +162582,6 @@ xref: EMAPA:19195 xref: FMA:54721 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2359 xref: http://www.snomedbrowser.com/Codes/Details/264194004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity relationship: contains UBERON:0000007 ! pituitary gland relationship: part_of UBERON:0003689 ! sella turcica @@ -163036,7 +162610,6 @@ xref: Alveolar:canals xref: EMAPA:25099 xref: FMA:57743 is_a: UBERON:0005744 ! bone foramen -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: conduit_for UBERON:0018397 ! posterior superior alveolar artery relationship: conduit_for UBERON:0018401 ! posterior superior alveolar nerve relationship: part_of UBERON:0001710 {source="EMAPA"} ! lower jaw region @@ -163062,7 +162635,9 @@ is_a: UBERON:0000043 ! tendon is_a: UBERON:0003570 ! respiratory system connective tissue is_a: UBERON:0003837 ! thoracic segment connective tissue relationship: attaches_to UBERON:0002359 ! fibrous pericardium +relationship: develops_from UBERON:0002204 ! musculoskeletal system relationship: develops_from UBERON:0006239 ! future central tendon +relationship: develops_from UBERON:0010084 ! future diaphragm relationship: immediate_transformation_of UBERON:0006239 {evidence="definitional"} ! future central tendon relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001103 {source="VHOG"} ! diaphragm @@ -163095,7 +162670,6 @@ synonym: "canalis incisivus" EXACT LATIN [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:19034 xref: FMA:59107 xref: Incisive:canals -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: conduit_for UBERON:0008810 ! nasopalatine nerve relationship: part_of UBERON:0003129 ! skull @@ -163110,7 +162684,6 @@ xref: EMAPA:19161 xref: FMA:59473 xref: http://www.snomedbrowser.com/Codes/Details/368876003 xref: Mandibular:canal -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0005744 ! bone foramen intersection_of: conduit_for UBERON:0018405 ! inferior alveolar nerve @@ -163128,7 +162701,6 @@ xref: EMAPA:29307 xref: FMA:65075 xref: http://www.snomedbrowser.com/Codes/Details/278830004 xref: Inguinal:rings -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003702 ! inguinal canal relationship: part_of UBERON:0006204 ! inguinal ligament @@ -163140,7 +162712,6 @@ def: "A valve that is part of a vein." [OBOL:automatic] synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 is_a: UBERON:0003978 ! valve -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0001638 ! vein relationship: part_of UBERON:0001638 ! vein @@ -163196,7 +162767,6 @@ xref: NCIT:C34179 xref: UMLS:C1517293 {source="ncithesaurus:Foramen_Secundum"} xref: VHOG:0001471 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004155 ! atrial septum secundum relationship: part_of UBERON:0004155 ! atrial septum secundum @@ -163263,7 +162833,6 @@ xref: EMAPA:19012 xref: FMA:75370 xref: http://www.snomedbrowser.com/Codes/Details/139380001 xref: Hypoglossal:canal -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0001650 ! hypoglossal nerve @@ -163305,7 +162874,6 @@ def: "On the lower surface of the basilar part of occipital bone, about 1 cm. in xref: EMAPA:19250 xref: FMA:75746 xref: Pharyngeal:tubercle -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0001042 {source="EMAPA"} ! chordate pharynx @@ -163346,7 +162914,6 @@ xref: EMAPA:18961 xref: FMA:77273 xref: http://www.snomedbrowser.com/Codes/Details/85139009 xref: Sublingual:caruncle -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 ! tongue @@ -163409,8 +162976,6 @@ xref: Tentorium:cerebelli xref: UMLS:C0228121 {source="ncithesaurus:Tentorium_Cerebelli"} xref: VHOG:0001298 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002363 ! dura mater [Term] @@ -163435,7 +163000,6 @@ xref: NCIT:C34221 xref: Spinal:canal xref: UMLS:C0037922 {source="ncithesaurus:Vertebral_Canal"} xref: UMLS:C1522467 {source="ncithesaurus:Neural_Canal"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0002240 ! spinal cord @@ -163571,9 +163135,15 @@ xref: http://www.snomedbrowser.com/Codes/Details/368738001 xref: MA:0000725 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005160 ! vestigial structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0006713 ! foramen cecum of frontal bone +relationship: develops_from UBERON:0000062 ! organ +relationship: develops_from UBERON:0000949 ! endocrine system +relationship: develops_from UBERON:0001004 ! respiratory system +relationship: develops_from UBERON:0001007 ! digestive system +relationship: develops_from UBERON:0001042 ! chordate pharynx +relationship: develops_from UBERON:0001555 ! digestive tract relationship: develops_from UBERON:0001761 ! future foramen cecum +relationship: develops_from UBERON:0003091 ! thyroid primordium relationship: immediate_transformation_of UBERON:0001761 ! future foramen cecum relationship: part_of UBERON:0003357 {source="EHDAA2"} ! epithelium of tongue relationship: part_of UBERON:0009471 ! dorsum of tongue @@ -163586,8 +163156,6 @@ synonym: "f. caecum ossis frontalis" RELATED LATIN [http://en.wikipedia.org/wiki synonym: "foramen caecum ossis frontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Foramen_cecum_(frontal_bone)] xref: FMA:57443 xref: http://en.wikipedia.org/wiki/Foramen_cecum_(frontal_bone) -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -163654,7 +163222,6 @@ synonym: "skeletal parts of autopod" EXACT [https://orcid.org/0000-0002-6601-216 synonym: "skeleton of autopod" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0005019 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0002470 ! autopod region @@ -163801,7 +163368,6 @@ xref: FMA:52760 xref: http://www.snomedbrowser.com/Codes/Details/264091009 xref: MA:0002985 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone relationship: surrounded_by UBERON:0002364 {source="cjm"} ! tympanic membrane @@ -163826,9 +163392,7 @@ xref: MA:0001182 xref: Modiolus:(cochlea) xref: NCIT:C33135 xref: UMLS:C0229503 {source="ncithesaurus:Modiolus"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0011386 ! facial modiolus relationship: contributes_to_morphology_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea @@ -163850,9 +163414,7 @@ xref: http://en.wikipedia.org/wiki/Osseous_spiral_lamina xref: http://www.snomedbrowser.com/Codes/Details/361315008 xref: MA:0001184 xref: MESH:D013137 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006723 {source="FMA"} ! cochlear modiolus relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea @@ -163874,10 +163436,9 @@ xref: http://www.snomedbrowser.com/Codes/Details/279840005 xref: MA:0001192 xref: MESH:D055493 xref: Spiral:ligament +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008845 ! nonskeletal ligament -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: attaches_to UBERON:0006106 {source="MESH-def"} ! cochlear canal relationship: has_part CL:0002665 ! otic fibrocyte relationship: part_of RO:0002577 ! system @@ -163955,7 +163516,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/17779003 xref: MA:0002497 xref: NCIT:C33309 xref: UMLS:C0227530 {source="ncithesaurus:Perisinusoidal_Space"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0004647 ! liver lobule @@ -163977,7 +163537,6 @@ xref: EMAPA:37457 {source="MA:th"} xref: FMA:59222 xref: http://en.wikipedia.org/wiki/Canthus xref: http://www.snomedbrowser.com/Codes/Details/181145006 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: connects UBERON:0001712 ! upper eyelid relationship: connects UBERON:0001713 ! lower eyelid @@ -164021,7 +163580,6 @@ is_a: UBERON:0001132 ! parathyroid gland is_a: UBERON:0015212 ! lateral structure relationship: has_developmental_contribution_from UBERON:0010027 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="EHDAA2-modified"} ! dorsal part of pharyngeal pouch 4 relationship: in_lateral_side_of UBERON:0000949 {source="FMA-abduced-lr"} ! endocrine system -relationship: never_in_taxon NCBITaxon:9989 ! Rodentia [Term] id: UBERON:0006755 @@ -164110,7 +163668,6 @@ xref: GAID:896 xref: http://www.snomedbrowser.com/Codes/Details/63716004 xref: MESH:D016850 xref: ZFA:0005570 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0000964 ! cornea @@ -164140,9 +163697,8 @@ xref: FMA:58838 xref: http://en.wikipedia.org/wiki/Zonule_of_Zinn xref: http://www.snomedbrowser.com/Codes/Details/362524000 xref: ZFA:0005573 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: continuous_with UBERON:0000965 ! lens of camera-type eye relationship: continuous_with UBERON:0001775 ! ciliary body relationship: develops_from UBERON:0001797 {source="ZFA"} ! vitreous humor @@ -164195,7 +163751,6 @@ name: left anterior vena cava synonym: "left superior vena cava" EXACT [EMAPA:18418] xref: EMAPA:18418 is_a: UBERON:0001638 ! vein -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0001585 ! anterior vena cava [Term] @@ -164230,7 +163785,6 @@ xref: MA:0003050 xref: MESH:A02.835.232.500.247.343 xref: NCIT:C32718 xref: UMLS:C0015813 {source="ncithesaurus:Head_of_the_Femur"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: adjacent_to UBERON:0001269 ! acetabular part of hip bone relationship: part_of UBERON:0004412 ! proximal epiphysis of femur @@ -164316,7 +163870,6 @@ synonym: "lamina quadrigemina" EXACT LATIN [FMA:77488, FMA:TA] synonym: "quadrigeminal plate" EXACT [FMA:77488] xref: FMA:77488 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1374 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0009616 ! presumptive midbrain @@ -164595,7 +164148,6 @@ comment: This grouping class is primarily to accommodate GO subset: grouping_class synonym: "optic lobe" RELATED [GAID:1233] xref: GAID:1233 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: capable_of GO:0007601 ! visual perception relationship: part_of UBERON:0001016 ! nervous system @@ -164606,7 +164158,6 @@ name: arthropod optic lobe def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] xref: FBbt:00003701 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0000955 ! brain @@ -164616,7 +164167,6 @@ id: UBERON:0006796 name: cephalopod optic lobe def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] synonym: "optic lobe" RELATED SENSU [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain @@ -164689,7 +164239,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/181924000 xref: Humeral_head xref: NCIT:C32720 xref: UMLS:C0223683 {source="ncithesaurus:Head_of_the_Humerus"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: connected_to UBERON:0006657 ! glenoid fossa relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus @@ -164700,7 +164249,6 @@ name: acetabular rim def: "A prominent unever rim that bounds the acetabulum, serving as the attachment for the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint." [http://en.wikipedia.org/wiki/Acetabulum#Structure] synonym: "acetabular margin" RELATED [] xref: FMA:16941 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001269 ! acetabular part of hip bone @@ -164718,7 +164266,6 @@ xref: NCIT:C75332 xref: Obturator:foramen xref: UMLS:C0223670 {source="ncithesaurus:Obturator_Foramen"} is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: conduit_for UBERON:0001314 ! obturator artery relationship: conduit_for UBERON:0005465 ! obturator nerve relationship: part_of UBERON:0007832 {source="AAO"} ! pelvic girdle skeleton @@ -164752,7 +164299,6 @@ xref: AAO:0000812 xref: FMA:23297 xref: http://www.snomedbrowser.com/Codes/Details/181920009 is_a: UBERON:0005055 ! zone of long bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001105 ! clavicle bone [Term] @@ -164824,7 +164370,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0223710 xref: http://www.snomedbrowser.com/Codes/Details/181949001 xref: NCIT:C33200 xref: UMLS:C0223710 {source="ncithesaurus:Olecranon"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna @@ -164839,7 +164384,6 @@ xref: AAO:0000330 xref: Exoccipital:condyle xref: FMA:52861 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001693 ! exoccipital bone [Term] @@ -164853,7 +164397,6 @@ xref: AAO:0000298 xref: FMA:53171 xref: http://www.snomedbrowser.com/Codes/Details/244686000 xref: Mental:foramen -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0018406 ! mental nerve @@ -164872,7 +164415,6 @@ xref: FMA:60116 xref: http://www.snomedbrowser.com/Codes/Details/281486007 is_a: CARO:0000003 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0000004 ! nose @@ -164913,7 +164455,6 @@ xref: EMAPA:37443 {source="MA:th"} xref: FMA:7487 xref: http://en.wikipedia.org/wiki/Body_of_sternum xref: http://www.snomedbrowser.com/Codes/Details/361743001 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000975 ! sternum @@ -164995,7 +164536,6 @@ synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "tracheal lumen" EXACT [FMA:7469] xref: FMA:7469 xref: http://www.snomedbrowser.com/Codes/Details/197486000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0003126 ! trachea @@ -165195,8 +164735,6 @@ xref: TAO:0001973 xref: UMLS:C0226994 {source="ncithesaurus:Tooth_Cusp"} xref: ZFA:0005434 is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003675 {source="FMA"} ! tooth crown [Term] @@ -165368,7 +164906,6 @@ xref: EMAPA:28811 xref: FMA:15893 xref: http://www.snomedbrowser.com/Codes/Details/3563003 xref: MA:0002654 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0000056 ! ureter @@ -165395,6 +164932,7 @@ is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005058 ! hemolymphoid system gland is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006858 ! adrenal/interrenal gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of GO:0006694 {source="https://doi.org/10.1242/dev.00427"} ! steroid biosynthetic process relationship: develops_from UBERON:0006857 {source="ZFA"} ! interrenal primordium relationship: has_developmental_contribution_from UBERON:0002342 {notes="check body vs gland", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! neural crest @@ -165425,7 +164963,6 @@ synonym: "suprarenal gland - interrenal gland" RELATED [VHOG:0001141] xref: VHOG:0001141 is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: has_part CL:0000166 ! chromaffin cell relationship: has_part CL:0000457 ! biogenic amine secreting cell @@ -165500,7 +165037,6 @@ xref: http://en.wikipedia.org/wiki/Body_of_femur xref: http://www.snomedbrowser.com/Codes/Details/182048009 xref: MA:0003055 xref: NCIT:C96209 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000981 ! femur @@ -165542,7 +165078,6 @@ xref: EMAPA:37540 {source="MA:th"} xref: FMA:32875 xref: MA:0003052 is_a: UBERON:0001438 ! metaphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000981 ! femur relationship: part_of UBERON:0000981 ! femur @@ -165557,6 +165092,7 @@ synonym: "rectum" NARROW [FBbt:00005756] synonym: "terminal section of digestive tract" RELATED [] xref: FBbt:00005756 xref: WBbt:0005773 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: continuous_with UBERON:0001245 ! anus relationship: develops_from UBERON:0001046 ! hindgut @@ -165616,7 +165152,6 @@ xref: http://en.wikipedia.org/wiki/Endostyle is_a: UBERON:0006846 ! surface groove relationship: capable_of GO:0006590 ! thyroid hormone generation relationship: has_potential_to_develop_into UBERON:0002046 {gci_relation="part_of", gci_filler="NCBITaxon:117569"} ! thyroid gland -relationship: never_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: only_in_taxon NCBITaxon:7711 {source="http://en.wikipedia.org/wiki/Endostyle"} ! Chordata relationship: part_of UBERON:0000949 {source="http://webs.lander.edu/rsfox/invertebrates/ammocoetes.html"} ! endocrine system relationship: part_of UBERON:0006562 ! pharynx @@ -165703,7 +165238,6 @@ synonym: "liver vascular system" RELATED [EHDAA2:0003454] xref: EHDAA2:0003454 xref: EMAPA:35501 xref: FMA:73748 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -165788,8 +165322,8 @@ synonym: "wings of the nose" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] xref: FMA:59519 xref: http://en.wikipedia.org/wiki/Ala_of_nose xref: http://www.snomedbrowser.com/Codes/Details/361345006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003102 ! surface structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0004067 ! lateral nasal prominence relationship: in_lateral_side_of UBERON:0007827 {source="FMA-abduced-lr"} ! external nose @@ -165845,7 +165379,6 @@ synonym: "lumen of gut" EXACT [FMA:45677] xref: BTO:0000349 xref: EMAPA:32908 xref: FMA:45677 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001555 ! digestive tract @@ -166127,7 +165660,6 @@ synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314] xref: CALOHA:TS-0682 xref: FMA:62410 xref: http://www.snomedbrowser.com/Codes/Details/309045006 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000488 ! atypical epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: has_part CL:0000098 ! sensory epithelial cell @@ -166143,6 +165675,7 @@ synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] xref: FMA:75636 xref: MA:0002870 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004721 ! crista ampullaris @@ -166169,8 +165702,6 @@ def: "The epithelial cell layer containing the sensory hair cells and their asso subset: pheno_slim xref: EMAPA:32883 xref: MA:0001189 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001846 ! internal ear @@ -166184,7 +165715,6 @@ xref: EHDAA2:0001470 xref: EHDAA:8983 xref: EMAPA:17592 xref: VHOG:0000632 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015814 ! outer ear epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001757 ! pinna @@ -166417,7 +165947,6 @@ xref: FMA:294636 xref: MA:0002873 xref: MFMO:0000055 is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001684 ! mandible relationship: seeAlso FMA:59459 @@ -166487,7 +166016,6 @@ xref: UMLS:C0175322 {source="BIRNLEX:1022"} xref: VHOG:0000244 xref: ZFA:0001195 is_a: UBERON:0000483 {source="EHDAA2"} ! epithelium -is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0002196 {source="MA"} ! adenohypophysis [Term] @@ -166529,7 +166057,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/69221006 xref: MESH:D006733 is_a: UBERON:0006969 ! cranial appendage disjoint_from: UBERON:0014448 ! feathered ear tuft -relationship: never_in_taxon NCBITaxon:9606 {source="ISBN:9780716717553"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: surrounds UBERON:0001474 ! bone element @@ -166818,7 +166345,6 @@ subset: grouping_class synonym: "adult heart" RELATED [FBbt:00003154] synonym: "dorsal tube" NARROW [http://en.wikipedia.org/wiki/Heart] synonym: "heart" NARROW [GO:0007507] -xref: FBbt:00003154 xref: http://www.sciencemag.org/content/313/5795/1922/F1.large.jpg xref: SPD:0000130 xref: TADS:0000147 @@ -166873,6 +166399,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/360403003 xref: MESH:A16.254.403.473.200 xref: NCIT:C34125 xref: UMLS:C0008508 {source="ncithesaurus:Chorionic_Villus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004027 {source="MP-def"} ! chorionic plate @@ -166951,7 +166478,6 @@ xref: BTO:0001439 xref: http://en.wikipedia.org/wiki/Venom xref: MESH:D014688 is_a: UBERON:0000456 ! secretion of exocrine gland -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: present_in_taxon NCBITaxon:264759 {source="Wikipedia"} relationship: present_in_taxon NCBITaxon:6656 ! Arthropoda relationship: present_in_taxon NCBITaxon:7898 ! Actinopterygii @@ -167042,7 +166568,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/361792007 xref: MESH:A02.835.232.500.247.510 xref: NCIT:C61563 xref: UMLS:C0015815 {source="ncithesaurus:Femoral_Neck"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -167084,7 +166609,6 @@ xref: NCIT:C32201 xref: UMLS:C1704302 {source="ncithesaurus:Bicuspid_Tooth"} is_a: UBERON:0013164 ! molariform tooth relationship: has_part UBERON:0006844 {editor_note="cardinality not allowed with transitivity in OWL", min_count="2", taxon_notes="some premolars may have 3 cusps"} ! cusp of tooth -relationship: never_in_taxon NCBITaxon:337687 {notes="Although there are a few exceptions, the dental formula for the great majority of cricetids is 1.0.0.3", source="http://en.wikipedia.org/wiki/Cricetidae"} ! Muroidea [Term] id: UBERON:0007121 @@ -167367,7 +166891,6 @@ synonym: "rectovaginal fold" EXACT [FMA:16533] xref: FMA:16533 xref: http://www.snomedbrowser.com/Codes/Details/361301006 xref: Recto-uterine:fold -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002358 ! peritoneum @@ -167438,7 +166961,6 @@ xref: EMAPA:18046 xref: FMA:13332 xref: http://www.snomedbrowser.com/Codes/Details/244940004 xref: VHOG:0000933 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001103 ! diaphragm @@ -167465,7 +166987,6 @@ def: "An anatomical cavity that surrounded_by a midgut." [OBOL:automatic] synonym: "midgut lumen" EXACT [FMA:54366] xref: EMAPA:18377 xref: FMA:54366 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001045 ! midgut @@ -167479,7 +167000,6 @@ def: "An anatomical cavity that surrounded_by a hindgut." [OBOL:automatic] synonym: "hindgut lumen" EXACT [FMA:54367] xref: EMAPA:18396 xref: FMA:54367 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001046 ! hindgut @@ -167635,7 +167155,6 @@ def: "An anatomical cavity that surrounded_by a anal canal." [OBOL:automatic] synonym: "anal canal lumen" EXACT [FMA:17357] xref: EMAPA:18836 xref: FMA:17357 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000159 ! anal canal @@ -167651,7 +167170,6 @@ synonym: "colonic lumen" RELATED [FMA:18374] xref: EMAPA:18945 xref: FMA:18374 xref: http://www.snomedbrowser.com/Codes/Details/362156004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001155 ! colon @@ -167763,7 +167281,6 @@ synonym: "long head of biceps brachii muscle" RELATED [FMA:37683] xref: EMAPA:25054 xref: FMA:37683 xref: Origin_and_insertion -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 {source="FMA"} ! muscle head relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii @@ -167779,7 +167296,6 @@ synonym: "short head of biceps brachii muscle" RELATED [FMA:37682] xref: EMAPA:25055 xref: FMA:37682 xref: Origin_and_insertion -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 {source="FMA"} ! muscle head relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii @@ -167806,7 +167322,6 @@ name: border of scapula synonym: "scapular border" EXACT [FMA:23797] xref: EMAPA:25124 xref: FMA:23797 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036304 ! anatomical border intersection_of: UBERON:0036304 ! anatomical border intersection_of: part_of UBERON:0006849 ! scapula @@ -167852,6 +167367,7 @@ xref: EMAPA:25127 xref: FMA:23242 xref: http://en.wikipedia.org/wiki/Medial_border_of_scapula xref: http://www.snomedbrowser.com/Codes/Details/368187009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007171 {source="EMAPA-modified"} ! border of scapula relationship: has_developmental_contribution_from UBERON:0002329 {source="http://www.ncbi.nlm.nih.gov/pubmed/20136669"} ! somite @@ -167922,7 +167438,6 @@ synonym: "basal cell layer of uroepithelium" EXACT [FMA:84154] xref: EMAPA:28806 xref: FMA:84154 is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000365 ! urothelium [Term] @@ -168088,8 +167603,8 @@ synonym: "bone marrow stroma" EXACT [FMA:21426] xref: CALOHA:TS-0085 xref: FMA:21426 xref: Stroma +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002371 ! bone marrow relationship: has_part CL:0002240 ! marrow fibroblast @@ -168110,8 +167625,8 @@ xref: FMA:7393 xref: http://www.snomedbrowser.com/Codes/Details/361384001 xref: NCIT:C117875 xref: Tracheobronchial:tree +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ -is_a: UBERON:0004119 ! endoderm-derived structure relationship: has_part UBERON:0002185 ! bronchus relationship: has_part UBERON:0003126 ! trachea relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium @@ -168183,8 +167698,8 @@ xref: EHDAA2:0002093 xref: EMAPA:16182 xref: TAO:0000999 xref: ZFA:0000999 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005256 ! trunk mesenchyme -is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0003083 ! trunk neural crest relationship: develops_from UBERON:0003083 ! trunk neural crest @@ -168275,7 +167790,6 @@ def: "The osseous cochlea is the bony foundation that forms the small shell arra subset: pheno_slim xref: EMAPA:35620 xref: MA:0000239 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001839 ! bony labyrinth relationship: part_of UBERON:0001844 ! cochlea @@ -168295,8 +167809,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1113 xref: MA:0000922 xref: PBA:128011936 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0007225 {source="lexical"} ! lateral entorhinal cortex relationship: part_of UBERON:0002728 ! entorhinal cortex relationship: part_of UBERON:0002895 ! secondary olfactory cortex @@ -168319,8 +167831,6 @@ xref: MA:0000911 xref: MBA:918 xref: PBA:128011876 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002022 {source="MA"} ! insula relationship: part_of UBERON:0002728 ! entorhinal cortex relationship: part_of UBERON:0002895 {source="MA"} ! secondary olfactory cortex @@ -168465,7 +167975,6 @@ xref: EHDAA2:0000031 xref: EHDAA:583 xref: EMAPA:16382 xref: VHOG:0000510 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 @@ -168477,7 +167986,6 @@ xref: EHDAA2:0000038 xref: EHDAA:595 xref: EMAPA:16388 xref: VHOG:0000511 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 @@ -169326,7 +168834,6 @@ synonym: "choroid plexus tectal ventricles" RELATED PLURAL [ZFA:0001445] xref: TAO:0001445 xref: ZFA:0001445 is_a: UBERON:0001886 ! choroid plexus -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002289 ! midbrain cerebral aqueduct relationship: part_of UBERON:0002289 ! midbrain cerebral aqueduct @@ -169364,7 +168871,6 @@ def: "A vasculature that is part of a pectoral appendage." [OBOL:automatic] synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096] xref: TAO:0005096 xref: ZFA:0005096 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007304 ! appendage vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0004710 ! pectoral appendage @@ -169377,7 +168883,6 @@ def: "A vasculature that is part of a chordate pharynx." [OBOL:automatic] synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: TAO:0005003 xref: ZFA:0005003 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001042 ! chordate pharynx @@ -169450,7 +168955,6 @@ xref: MA:0002536 xref: MESH:D013183 xref: NCIT:C13278 xref: UMLS:C0038056 {source="ncithesaurus:Sputum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006538 ! respiratory system fluid/secretion relationship: part_of UBERON:0006524 ! alveolar system @@ -169586,8 +169090,8 @@ synonym: "pancreatic lobule" EXACT [FMA:16012] xref: EMAPA:37710 {source="MA:th"} xref: FMA:16012 xref: MA:0000721 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: has_part UBERON:0001263 ! pancreatic acinus relationship: has_part UBERON:0014719 ! intralobular duct relationship: part_of UBERON:0000017 ! exocrine pancreas @@ -169629,7 +169133,6 @@ def: "Thin keratinized layer of epidermis projecting from outer surface of beak[ synonym: "horny sheath of beak" RELATED [] synonym: "outer keratin layer of beak" RELATED [] xref: Rhamphotheca -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0005094 ! beak @@ -169652,7 +169155,6 @@ def: "A rhamphotheca that is part of a lower beak." [OBOL:automatic] synonym: "gnathotheca" RELATED [http://en.wikipedia.org/wiki/Beak#Rhamphotheca] synonym: "mandibular beak" RELATED [] is_a: UBERON:0007330 ! rhamphotheca -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0007330 ! rhamphotheca intersection_of: part_of UBERON:0010013 ! lower beak relationship: part_of UBERON:0010013 ! lower beak @@ -169665,7 +169167,6 @@ synonym: "nested pallium" RELATED [BTO:0003389] xref: BTO:0003389 xref: http://en.wikipedia.org/wiki/Nidopallium is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -169677,7 +169178,6 @@ synonym: "hyperstriatum" RELATED [BTO:0003400, http://en.wikipedia.org/wiki/Hype xref: BTO:0003400 xref: http://en.wikipedia.org/wiki/Hyperpallium is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -169687,7 +169187,6 @@ name: mesopallium synonym: "middle pallium" RELATED [BTO:0003405] xref: BTO:0003405 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -169702,7 +169201,6 @@ xref: BM:ARCO xref: BTO:0003408 xref: http://en.wikipedia.org/wiki/Arcopallium is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -169721,7 +169219,6 @@ name: stria vascularis vasculature def: "Blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] synonym: "stria vascularis blood vessel" RELATED [MP:0004368] synonym: "stria vascularis blood vessels" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -169776,7 +169273,6 @@ xref: Birds xref: BTO:0000301 xref: http://www.snomedbrowser.com/Codes/Details/68028003 xref: NCIT:C111162 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -169793,6 +169289,7 @@ xref: http://en.wikipedia.org/wiki/Proventriculus xref: http://www.snomedbrowser.com/Codes/Details/63897003 xref: MESH:D011531 xref: NCIT:C111301 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011953 {source="cjm"} ! stomach glandular region relationship: capable_of GO:0001696 ! gastric acid secretion relationship: continuous_with UBERON:0005052 ! gizzard @@ -169828,6 +169325,7 @@ def: "Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, subset: organ_slim synonym: "forestomach" BROAD SENSU [BTO:0000480] xref: BTO:0000480 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011954 ! stomach non-glandular region relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0007366 ! ruminant stomach @@ -169908,7 +169406,6 @@ def: "An anatomical surface that is part of a tongue." [OBOL:automatic] synonym: "tongue surface" EXACT [FMA:54647] xref: FMA:54647 xref: http://www.snomedbrowser.com/Codes/Details/314870004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0001723 ! tongue @@ -170002,7 +169499,6 @@ synonym: "stratum compactum" EXACT [AAO:0010600] xref: AAO:0010600 xref: TAO:0001182 xref: ZFA:0001182 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0002067 ! dermis @@ -170017,7 +169513,6 @@ xref: http://en.wikipedia.org/wiki/Yolk xref: MESH:A16.631.325 xref: ncithesaurus:Egg_Yolk xref: VHOG:0001742 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0007379 ! shelled egg @@ -170032,7 +169527,6 @@ xref: Egg:(biology) is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000474 ! female reproductive system -relationship: never_in_taxon NCBITaxon:32525 ! Theria [Term] id: UBERON:0007380 @@ -170056,7 +169550,6 @@ name: epidermal scale def: "A fold in the surface epidermis composed of keratin[Kardong]." [http://en.wikipedia.org/wiki/Reptile_scale, ISBN:0073040584] xref: Reptile:scale is_a: UBERON:0002542 ! scale -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0001003 ! skin epidermis @@ -170129,7 +169622,6 @@ def: "A cartilage tissue that is part of a pectoral appendage." [OBOL:automatic] synonym: "pectoral fin cartilage" RELATED [TAO:0000257] xref: TAO:0000257 xref: ZFA:0000257 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004710 ! pectoral appendage @@ -170144,7 +169636,6 @@ def: "A cartilage tissue that is part of a pelvic appendage." [OBOL:automatic] synonym: "pelvic fin cartilage" RELATED [TAO:0001459] xref: TAO:0001459 xref: ZFA:0001459 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004709 ! pelvic appendage @@ -170285,8 +169776,6 @@ xref: NCIT:C33628 xref: Stratum:intermedium xref: UMLS:C1514987 {source="ncithesaurus:Stratum_Intermedium"} is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ [Term] @@ -170513,7 +170002,6 @@ synonym: "apical epidermal caps" EXACT PLURAL [ZFA:0005148] synonym: "apical epithelial cap" EXACT [http://en.wikipedia.org/wiki/Blastema] xref: TAO:0005148 xref: ZFA:0005148 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007567 {source="ZFA"} ! regenerating anatomical structure relationship: part_of UBERON:2001389 {source="ZFA"} ! regeneration epithelium of fin/limb relationship: present_in_taxon NCBITaxon:8293 {source="Wikipedia"} ! Caudata @@ -170651,7 +170139,6 @@ xref: NCIT:C52917 xref: UMLS:C1707983 {source="ncithesaurus:Extensor_Digitorum_Lateralis"} is_a: UBERON:0011024 {source="Wikipedia"} ! extrinsic extensor muscle of manus relationship: has_muscle_insertion UBERON:0003639 {source="ISBN:9780716717553"} ! manual digit 5 phalanx -relationship: never_in_taxon NCBITaxon:9606 {source="ISBN:9780716717553"} ! Homo sapiens [Term] id: UBERON:0007614 @@ -170680,7 +170167,6 @@ xref: EMAPA:29836 xref: MA:0001740 is_a: UBERON:0001328 {source="MA"} ! lobe of prostate relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland -relationship: never_in_taxon NCBITaxon:9606 {source="http://www.ncbi.nlm.nih.gov/pubmed/15163300"} ! Homo sapiens [Term] id: UBERON:0007616 @@ -170722,7 +170208,6 @@ name: synovial cavity of hip joint def: "A synovial cavity of joint that is part of a hip joint." [OBOL:automatic] xref: EMAPA:19021 xref: FMA:9701 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007617 ! synovial cavity of joint intersection_of: UBERON:0007617 ! synovial cavity of joint intersection_of: part_of UBERON:0001486 ! hip joint @@ -171230,7 +170715,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=642 xref: http://www.snomedbrowser.com/Codes/Details/369283008 xref: Lateral:recess xref: MBA:153 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="FMA"} ! anatomical space disjoint_from: UBERON:0008902 ! lateral recess of third ventricle relationship: part_of UBERON:0002422 {source="EMAPA"} ! fourth ventricle @@ -171247,7 +170731,6 @@ xref: EMAPA:19322 xref: FMA:38872 xref: http://en.wikipedia.org/wiki/Anular_ligament_of_radius xref: http://www.snomedbrowser.com/Codes/Details/182394000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint relationship: part_of UBERON:0007165 {source="FMA"} ! proximal radio-ulnar joint @@ -171276,7 +170759,6 @@ xref: TAO:0000875 xref: VHOG:0001209 xref: ZFA:0000875 is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0007213 {source="EMAPA"} ! mesenchyme derived from head neural crest [Term] @@ -171294,6 +170776,7 @@ id: UBERON:0007684 name: uriniferous tubule def: "Functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule." [ISBN:0073040584] xref: FMA:17691 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube @@ -171394,7 +170877,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/368724008 xref: NCIT:C33738 xref: UMLS:C0226971 {source="ncithesaurus:Taste_Pore"} is_a: UBERON:0000161 {source="FMA"} ! orifice -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0001727 ! taste bud relationship: continuous_with UBERON:0000167 ! oral cavity @@ -171510,7 +170992,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1007150190 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=833 {source="BIRNLEX:1726"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=833 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002150 ! superior cerebellar peduncle relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum @@ -171626,7 +171107,6 @@ is_a: UBERON:0001474 ! bone element is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0003133 ! reproductive organ -relationship: never_in_taxon NCBITaxon:9606 {source="Wikipedia"} ! Homo sapiens relationship: part_of UBERON:0003133 ! reproductive organ [Term] @@ -172185,7 +171665,6 @@ def: "Any sweat gland that is part of a scrotum." [OBOL:automatic] subset: organ_slim xref: EMAPA:29743 is_a: UBERON:0001820 ! sweat gland -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005399 ! male reproductive gland intersection_of: UBERON:0001820 ! sweat gland intersection_of: part_of UBERON:0001300 ! scrotum @@ -172405,7 +171884,6 @@ def: "Sclerotic rings are rings of bone found in the eyes of several groups of v synonym: "scleral ring" EXACT [http://en.wikipedia.org/wiki/Sclerotic_ring] xref: Sclerotic:ring is_a: UBERON:0010290 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051547"} ! scleral ossicle -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001697 ! orbit of skull [Term] @@ -172430,6 +171908,7 @@ xref: BTO:0004705 xref: http://linkedlifedata.com/resource/umls/id/C1516792 xref: NCIT:C34132 xref: UMLS:C1516792 {source="ncithesaurus:Connecting_Stalk"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm @@ -172483,7 +171962,6 @@ synonym: "panniculus adiposus telae subcutaneae abdominis" EXACT LATIN [FMA:1992 synonym: "superficial layer of superficial fascia of abdomen" EXACT [FMA:19922] xref: FMA:19922 xref: http://en.wikipedia.org/wiki/Fascia_of_Camper -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013493 ! abdominal fascia relationship: has_part UBERON:0001013 {source="Wikipedia"} ! adipose tissue relationship: part_of UBERON:0006635 {source="FMA"} ! anterior abdominal wall @@ -172535,12 +172013,12 @@ xref: TAO:0001117 xref: UMLS:C0039259 {source="ncithesaurus:Tail"} xref: XAO:0003026 xref: ZFA:0001117 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002415 ! tail intersection_of: UBERON:0002415 ! tail intersection_of: part_of UBERON:0006071 ! caudal region relationship: capable_of_part_of GO:0007626 ! locomotory behavior relationship: develops_from UBERON:0007144 ! embryonic post-anal tail -relationship: never_in_taxon NCBITaxon:314295 ! Hominoidea relationship: only_in_taxon NCBITaxon:7711 {notes="possible exception in hemichordates", source="cjm"} ! Chordata relationship: part_of UBERON:0006071 ! caudal region relationship: transformation_of UBERON:0007144 ! embryonic post-anal tail @@ -172635,8 +172113,6 @@ xref: EMAPA:35735 xref: FMA:77849 xref: MA:0001194 is_a: UBERON:0001967 ! reticular lamina of epithelium -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001967 ! reticular lamina of epithelium intersection_of: part_of UBERON:0002227 ! spiral organ of cochlea relationship: part_of UBERON:0002227 ! spiral organ of cochlea @@ -172668,7 +172144,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0458561 xref: http://www.snomedbrowser.com/Codes/Details/265785009 xref: NCIT:C32566 xref: UMLS:C0458561 {source="ncithesaurus:External_Nose"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone intersection_of: UBERON:0034929 ! external soft tissue zone intersection_of: has_part UBERON:0005928 ! external naris @@ -172720,7 +172195,6 @@ xref: MA:0000293 xref: NCIT:C33287 xref: UMLS:C0030786 {source="ncithesaurus:Pelvic_Bone"} is_a: UBERON:0003828 ! abdominal segment bone -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone @@ -172811,9 +172285,7 @@ def: "The organ of balance composed of three long bony tubes of the labyrinth." subset: pheno_slim synonym: "osseous semicircular canal" EXACT [OBOL:automatic] xref: MA:0000250 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 {notes="checkme"} ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal @@ -172926,7 +172398,6 @@ disjoint_from: UBERON:0010372 ! uncinate process of ethmoid disjoint_from: UBERON:0010373 ! uncinate process of pancreas property_value: dc-contributor https://github.com/alex-dececchi property_value: dc-contributor https://github.com/cmungall -relationship: never_in_taxon NCBITaxon:8827 {source="http://www.ncbi.nlm.nih.gov/pubmed/15755883"} ! Anhimidae relationship: part_of UBERON:0010388 {source="ISBN:0073040584"} ! proximal segment of rib [Term] @@ -173007,9 +172478,8 @@ xref: TAO:0001642 xref: VSAO:0000054 xref: XAO:0004050 xref: ZFA:0001633 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 {source="VSAO"} ! connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: bounding_layer_of UBERON:0002328 {source="VSAO-modified"} ! notochord relationship: develops_from UBERON:0003089 {source="ISBN:0073040584"} ! sclerotome relationship: part_of UBERON:0002328 ! notochord @@ -173162,7 +172632,6 @@ name: surface of cartilage def: "An anatomical surface that is part of a cartilage element." [OBOL:automatic] synonym: "cartilage surface" EXACT [FMA:76668] xref: FMA:76668 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0007844 ! cartilage element @@ -173291,7 +172760,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/372177002 xref: MA:0002708 xref: Nail:plate xref: NCIT:C34216 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013754 ! integumentary system layer property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/rfoulger @@ -173319,7 +172788,6 @@ xref: MESH:D002680 xref: NCIT:C81169 xref: TAO:0002254 is_a: UBERON:0001444 ! subdivision of head -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001456 {source="MESH"} ! face relationship: part_of UBERON:0001710 {source="FMA"} ! lower jaw region @@ -173380,7 +172848,6 @@ xref: FMA:9738 xref: http://www.snomedbrowser.com/Codes/Details/281903009 xref: MA:0003089 xref: Pelvic:cavity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0002355 ! pelvic region of trunk @@ -173537,8 +173004,6 @@ synonym: "ampulla" BROAD [BTO:0002124] xref: BTO:0002124 is_a: UBERON:0000062 ! organ disjoint_from: UBERON:0009474 ! ascidian ampulla -relationship: never_in_taxon NCBITaxon:35069 {source="Wikipedia"} ! Crinoidea -relationship: never_in_taxon NCBITaxon:7618 {source="Wikipedia"} ! Ophiuroidea relationship: only_in_taxon NCBITaxon:7586 ! Echinodermata relationship: part_of UBERON:0008247 ! tube foot relationship: part_of UBERON:0008251 {source="BTO"} ! water vascular system @@ -173553,7 +173018,6 @@ xref: BTO:0001923 xref: http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg xref: http://content60.eol.org/content/2012/06/14/21/52446_580_360.jpg xref: http://eol.org/data_objects/19677434 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: only_in_taxon NCBITaxon:7625 ! Echinoidea relationship: part_of UBERON:0000165 {source="BTO"} ! mouth @@ -173616,7 +173080,6 @@ synonym: "oral side of organism" RELATED [] synonym: "oral subdivision" RELATED [] is_a: UBERON:0000475 ! organism subdivision relationship: has_part UBERON:0000166 ! oral opening -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: present_in_taxon NCBITaxon:6073 ! Cnidaria relationship: present_in_taxon NCBITaxon:7588 @@ -173633,7 +173096,6 @@ synonym: "aboral side of organism" RELATED [] synonym: "aboral subdivision" RELATED [] is_a: UBERON:0000475 ! organism subdivision relationship: aboral_to UBERON:0008258 ! oral subdivision of organism -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: present_in_taxon NCBITaxon:6073 ! Cnidaria relationship: present_in_taxon NCBITaxon:7588 @@ -173648,7 +173110,6 @@ synonym: "spiny appendage" RELATED [] xref: Spine:(zoology) is_a: UBERON:0000026 {status="unstable"} ! appendage relationship: has_quality PATO:0001954 ! subulate -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:33213 ! Bilateria [Term] @@ -173920,7 +173381,6 @@ synonym: "feather quill" RELATED [BTO:0001608] synonym: "quill" RELATED [] xref: BTO:0001608 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0011784 ! feather shaft [Term] @@ -173931,7 +173391,6 @@ synonym: "vane" BROAD [] synonym: "vexillum" EXACT [https://en.wikivet.net/Feather_-_Anatomy_%26_Physiology] xref: BTO:0002536 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connected_to UBERON:0008288 ! feather rachis relationship: has_part UBERON:0008294 ! feather barb relationship: part_of UBERON:0008292 ! vaned feather @@ -173952,7 +173411,6 @@ relationship: part_of UBERON:0011784 ! feather shaft id: UBERON:0008290 name: afterfeather is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] @@ -173997,7 +173455,6 @@ def: "One of a series of branches fused to the rachis (stem) of a feather. The b synonym: "barb" BROAD SENSU [] xref: Barb:(feather) xref: BTO:0002578 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: branching_part_of UBERON:0011784 ! feather shaft relationship: part_of UBERON:0000022 ! feather @@ -174009,7 +173466,6 @@ name: feather barbule def: "Projection from feather bard." [http://orcid.org/0000-0002-6601-2165] synonym: "barbule" BROAD SENSU [] xref: BTO:0003397 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: branching_part_of UBERON:0008294 ! feather barb relationship: part_of UBERON:0000022 ! feather @@ -174035,7 +173491,6 @@ name: inner chondrogenic layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes." [http://en.wikipedia.org/wiki/The_Free_Encyclopedia] xref: BTO:0005090 xref: http://en.wikipedia.org/wiki/The_Free_Encyclopedia -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium @@ -174046,7 +173501,6 @@ name: outer fibrous layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers." [http://en.wikipedia.org/wiki/The_Free_Encyclopedia] xref: BTO:0005091 xref: http://en.wikipedia.org/wiki/The_Free_Encyclopedia -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium @@ -174069,7 +173523,6 @@ subset: organ_slim xref: FMA:55076 xref: http://www.snomedbrowser.com/Codes/Details/178973008 is_a: UBERON:0003295 ! pharyngeal gland -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -174352,7 +173805,6 @@ subset: pheno_slim xref: MA:0002874 xref: Nasal:bridge is_a: UBERON:0000061 {source="AEO"} ! anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0006333 {source="MA"} ! snout @@ -174369,7 +173821,6 @@ xref: EMAPA:37832 {source="MA:th"} xref: FMA:59725 xref: http://www.snomedbrowser.com/Codes/Details/361930008 is_a: UBERON:0003102 ! surface structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] @@ -174836,7 +174287,6 @@ synonym: "semilunar notch" RELATED [http://en.wikipedia.org/wiki/Trochlear_notch synonym: "semilunar notch of ulna" EXACT [FMA:23619] xref: FMA:23619 xref: Trochlear:notch -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna @@ -175125,7 +174575,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/244730009 xref: NCIT:C33158 xref: UMLS:C0224219 {source="ncithesaurus:Nasal_Muscle"} is_a: UBERON:0001577 {source="FMA"} ! facial muscle -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0000004 ! nose @@ -175890,7 +175339,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1183911 xref: http://www.snomedbrowser.com/Codes/Details/251498008 xref: NCIT:C13100 xref: UMLS:C1183911 {source="ncithesaurus:Prostatic_Muscular_Tissue"} -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0002385 ! muscle tissue @@ -175910,7 +175358,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227608 xref: http://www.snomedbrowser.com/Codes/Details/279370006 xref: NCIT:C32740 xref: UMLS:C0227608 {source="ncithesaurus:Hilar_Area_of_the_Kidney"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002113 ! kidney @@ -175982,6 +175429,7 @@ xref: EHDAA:79 xref: EMAPA:16051 xref: FMA:85520 xref: http://en.wikipedia.org/wiki/Hypoblast +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000089 ! hypoblast (generic) relationship: adjacent_to UBERON:0002532 ! epiblast (generic) relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass @@ -176194,7 +175642,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227199 xref: http://www.snomedbrowser.com/Codes/Details/268518001 xref: NCIT:C32660 xref: UMLS:C0227199 {source="ncithesaurus:Gastric_Rugae"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008790 ! rugal fold intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0000945 ! stomach @@ -176208,7 +175655,6 @@ def: "A rugal fold that is part of a vagina." [OBOL:automatic] synonym: "ruga of vagina" EXACT [FMA:19991] synonym: "vaginal ruga" EXACT [FMA:19991] xref: FMA:19991 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008790 ! rugal fold intersection_of: UBERON:0008790 ! rugal fold @@ -176240,7 +175686,6 @@ synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse xref: EMAPA:35638 xref: FMA:75652 is_a: UBERON:0008790 ! rugal fold -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -176253,6 +175698,7 @@ def: "Primitive endoderm-derived tissue that lines the luminal surface of the mu subset: pheno_slim synonym: "distal endoderm" RELATED [EMAPA:16053] xref: EMAPA:16053 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0016888 {source="cjm"} ! transitional anatomical structure relationship: develops_from UBERON:0008780 {source="MP"} ! inner cell mass derived epiblast @@ -176334,7 +175780,6 @@ xref: FMA:74580 xref: Gingival:sulcus xref: http://www.snomedbrowser.com/Codes/Details/245753001 xref: NCIT:C114645 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus intersection_of: UBERON:0000093 ! sulcus intersection_of: adjacent_to UBERON:0001091 ! calcareous tooth @@ -176364,7 +175809,6 @@ xref: EMAPA:29794 xref: http://www.snomedbrowser.com/Codes/Details/78779004 xref: MA:0000402 xref: NCIT:C77618 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland relationship: part_of UBERON:0002367 {not_supported_by="MA", source="EMAPA"} ! prostate gland @@ -176387,7 +175831,6 @@ name: foramina of scarpa def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [http://en.wikipedia.org/wiki/Foramina_of_Scarpa] synonym: "foramina of scarpa" RELATED [http://en.wikipedia.org/wiki/Foramina_of_Scarpa] xref: http://en.wikipedia.org/wiki/Foramina_of_Scarpa -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005871 ! palatine process of maxilla relationship: surrounds UBERON:0008810 ! nasopalatine nerve @@ -176458,8 +175901,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279775003 xref: NCIT:C32723 xref: UMLS:C0229512 {source="ncithesaurus:Helicotrema"} is_a: UBERON:0000161 {source="FMA"} ! orifice -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth [Term] @@ -176478,7 +175919,6 @@ xref: FMA:293041 xref: http://linkedlifedata.com/resource/umls/id/C1519038 xref: NCIT:C34248 xref: UMLS:C1519038 {source="ncithesaurus:Pharyngeal_Apparatus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0000922 ! embryo @@ -176496,7 +175936,6 @@ is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013765 ! digestive system element relationship: capable_of_part_of GO:0007631 ! feeding behavior relationship: develops_from UBERON:0007690 {source="cjm"} ! early pharyngeal endoderm -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:33511 {source="http://www.ncbi.nlm.nih.gov/pubmed/11961109"} ! Deuterostomia relationship: part_of UBERON:0001042 ! chordate pharynx @@ -176518,7 +175957,6 @@ id: UBERON:0008817 name: thymus primordium endoderm def: "An endoderm that is part of a thymus primordium." [OBOL:automatic] is_a: UBERON:0000925 ! endoderm -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0005562 ! thymus primordium relationship: has_developmental_contribution_from UBERON:0007124 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389"} ! pharyngeal pouch 3 @@ -176624,7 +176062,6 @@ xref: MA:0001735 xref: NCIT:C32484 xref: UMLS:C0458632 {source="ncithesaurus:Duct_of_the_Epididymis"} is_a: UBERON:0000058 {source="FMA"} ! duct -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct intersection_of: branching_part_of UBERON:0001301 ! epididymis @@ -176683,7 +176120,6 @@ xref: FMA:321632 xref: http://www.snomedbrowser.com/Codes/Details/95949009 xref: MA:0001470 xref: Presphenoid -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone @@ -176884,7 +176320,6 @@ synonym: "scrotal ligament" RELATED [http://en.wikipedia.org/wiki/Gubernaculum] xref: http://www.snomedbrowser.com/Codes/Details/279592009 xref: Scrotal:ligament is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament intersection_of: UBERON:0008841 ! suspensory ligament @@ -177007,7 +176442,6 @@ subset: pheno_slim synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] synonym: "epamniotic cavity" RELATED [MP:0011207] xref: EMAPA:16080 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0004364 ! ectoplacental cone @@ -177057,9 +176491,7 @@ def: "A group of granular epithelial cells in the uterine muscle beneath the pla subset: organ_slim subset: pheno_slim xref: MA:0001723 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005398 ! female reproductive gland -relationship: never_in_taxon NCBITaxon:9443 {source="MP:0010777"} ! Primates relationship: part_of UBERON:0002450 {source="MP"} ! decidua [Term] @@ -177074,7 +176506,6 @@ synonym: "tunica muscularis (gaster)" EXACT [FMA:14909] synonym: "tunica muscularis gastris" EXACT [] xref: FMA:14909 xref: http://www.snomedbrowser.com/Codes/Details/362132003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018261 ! muscular coat of digestive tract is_a: UBERON:0034933 ! layer of smooth muscle tissue intersection_of: UBERON:0006660 ! muscular coat @@ -177099,7 +176530,6 @@ synonym: "stratum circulare tunicae muscularis gastricae" EXACT LATIN [FMA:14911 xref: FMA:14911 xref: http://www.snomedbrowser.com/Codes/Details/2746007 xref: MA:0001628 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa relationship: deep_to UBERON:0002439 ! myenteric nerve plexus @@ -177194,7 +176624,6 @@ synonym: "oblique fiber layer of gastric muscularis" EXACT [FMA:14912] synonym: "oblique muscle layer of stomach" EXACT [FMA:14912] xref: EMAPA:37965 {source="MA:th"} xref: FMA:14912 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 {notes="middle layer in FMA"} ! organ component layer is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: composed_primarily_of UBERON:0001135 ! smooth muscle tissue @@ -177214,7 +176643,6 @@ synonym: "stratum longitudinale (tunica muscularis)(gaster)" EXACT LATIN [FMA:14 synonym: "stratum longitudinale tunicae muscularis gastricae" EXACT LATIN [FMA:14910, FMA:TA] xref: EMAPA:37966 {source="MA:th"} xref: FMA:14910 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa relationship: part_of UBERON:0008856 ! stomach muscularis externa @@ -177226,8 +176654,6 @@ name: enamel knot def: "A transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps." [MP:0010864] subset: pheno_slim xref: BTO:0005791 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster relationship: contributes_to_morphology_of UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:0003843 ! dental epithelium @@ -177243,7 +176669,6 @@ synonym: "bone trabeculae" RELATED [MP:0010867] xref: http://linkedlifedata.com/resource/umls/id/C2826619 xref: NCIT:C82999 xref: UMLS:C2826619 {source="ncithesaurus:Bone_Trabeculae"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: contributes_to_morphology_of UBERON:0002483 ! trabecular bone tissue relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue @@ -177267,7 +176692,6 @@ def: "The openings in the alveolar septum that permit air flow between adjacent subset: pheno_slim xref: EMAPA:37391 {source="MA:th"} is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] @@ -177302,7 +176726,6 @@ synonym: "superficial fascia muscular layer" EXACT [] xref: EMAPA:18188 xref: MA:0003140 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004253 ! skin muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -177327,7 +176750,6 @@ xref: EMAPA:37866 {source="MA:th"} xref: FMA:70963 xref: http://www.snomedbrowser.com/Codes/Details/51025007 xref: NCIT:C62356 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium relationship: adjacent_to UBERON:0001003 ! skin epidermis relationship: adjacent_to UBERON:0002067 ! dermis @@ -177362,7 +176784,6 @@ xref: FMA:61035 xref: http://www.snomedbrowser.com/Codes/Details/362548009 xref: MA:0001228 is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001757 {source="MA"} ! pinna [Term] @@ -177388,7 +176809,6 @@ xref: DHBA:10556 xref: http://en.wikipedia.org/wiki/Rostral_migratory_stream xref: PBA:128012584 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0002264 {source="MP-modified"} ! olfactory bulb relationship: connects UBERON:0004922 ! postnatal subventricular zone relationship: part_of UBERON:0001893 ! telencephalon @@ -177620,8 +177040,6 @@ intersection_of: UBERON:0000026 ! appendage intersection_of: has_skeleton UBERON:0012353 ! fin skeleton relationship: confers_advantage_in ENVO:00002030 ! aquatic biome relationship: has_skeleton UBERON:0012353 ! fin skeleton -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires -relationship: never_in_taxon NCBITaxon:8782 ! Aves [Term] id: UBERON:0008902 @@ -177632,7 +177050,6 @@ synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-2 synonym: "lateral recesses" RELATED PLURAL [ZFA:0000231] xref: TAO:0000231 xref: ZFA:0000231 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="ZFA"} ! anatomical space relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle @@ -177729,7 +177146,6 @@ xref: AAO:0010779 xref: TAO:0001638 xref: VSAO:0000308 xref: ZFA:0001630 -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007842 {source="VSAO"} ! membrane bone relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium relationship: participates_in GO:0036073 {source="VSAO"} ! perichondral ossification @@ -177758,14 +177174,11 @@ synonym: "electrosensory ampullary organ" EXACT [] xref: AAO:0001006 xref: TAO:0002104 is_a: UBERON:0003103 {source="TAO"} ! compound organ -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0035555 ! lateral line sense organ relationship: capable_of GO:0050964 ! detection of electrical stimulus involved in electroception relationship: develops_from UBERON:0009128 {gci_relation="part_of", gci_filler="NCBITaxon:32443", source="https://doi.org/10.1038/ncomms1502"} ! lateral line placode relationship: develops_from UBERON:0009128 {gci_filler="NCBITaxon:8295", gci_relation="part_of", source="https://doi.org/10.1038/ncomms1502"} ! lateral line placode relationship: innervated_by UBERON:0008906 ! lateral line nerve -relationship: never_in_taxon NCBITaxon:7915 ! Lepisosteidae -relationship: never_in_taxon NCBITaxon:7922 ! Amiidae relationship: part_of UBERON:0010202 ! lateral line relationship: present_in_taxon NCBITaxon:7746 relationship: present_in_taxon NCBITaxon:7777 ! Chondrichthyes @@ -177784,8 +177197,6 @@ xref: http://en.wikipedia.org/wiki/Ampullae_of_Lorenzini is_a: UBERON:0003103 ! compound organ is_a: UBERON:0035555 ! lateral line sense organ relationship: capable_of GO:0050964 ! detection of electrical stimulus involved in electroception -relationship: never_in_taxon NCBITaxon:32443 {source="Wikipedia"} ! Teleostei -relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: part_of UBERON:0002540 ! lateral line system relationship: present_in_taxon NCBITaxon:119203 ! Selachii @@ -177957,7 +177368,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3241 xref: http://www.snomedbrowser.com/Codes/Details/279252006 xref: MBA:453 xref: MESH:A08.186.211.730.885.213.670.675 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain relationship: capable_of_part_of NBO:0000308 ! sensation behavior relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus @@ -178083,7 +177493,6 @@ xref: BTO:0000370 xref: GO:0097099 xref: http://en.wikipedia.org/wiki/Albumen xref: ncithesaurus:Egg_White -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0007379 ! shelled egg relationship: protects UBERON:0007378 ! egg yolk @@ -178112,7 +177521,6 @@ xref: FMA:27360 xref: http://www.snomedbrowser.com/Codes/Details/201712001 xref: MA:0003168 is_a: UBERON:0000353 {source="FMA"} ! parenchyma -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 {source="FMA"} ! lung @@ -178212,7 +177620,6 @@ is_a: UBERON:0008948 {source="FMA"} ! upper lobe of lung is_a: UBERON:0008951 ! left lung lobe intersection_of: UBERON:0008948 ! upper lobe of lung intersection_of: part_of UBERON:0002168 ! left lung -relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0002168 ! left lung [Term] @@ -178237,7 +177644,6 @@ is_a: UBERON:0008949 {source="FMA"} ! lower lobe of lung is_a: UBERON:0008951 ! left lung lobe intersection_of: UBERON:0008949 ! lower lobe of lung intersection_of: part_of UBERON:0002168 ! left lung -relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0002168 ! left lung [Term] @@ -178256,8 +177662,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/184916009 xref: NCIT:C40373 xref: UMLS:C0225740 {source="ncithesaurus:Lingula"} is_a: UBERON:0000063 {source="FMA"} ! organ subunit -is_a: UBERON:0004119 ! endoderm-derived structure -relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0008952 {source="ISBN:0123813611"} ! upper lobe of left lung [Term] @@ -178582,7 +177986,6 @@ synonym: "parenchyma of kidney" EXACT [FMA:15574] xref: BTO:0003604 xref: FMA:15574 xref: http://www.snomedbrowser.com/Codes/Details/29704000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000353 {source="FMA"} ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002113 ! kidney @@ -178702,7 +178105,7 @@ def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997 synonym: "hoof laminae" RELATED [BTO:0003997] xref: BTO:0003997 xref: http://www.snomedbrowser.com/Codes/Details/370743008 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0000061 ! anatomical structure relationship: connects UBERON:5106050 ! digit 3 digitopodial skeleton relationship: part_of UBERON:0008963 {source="BTO"} ! hoof @@ -178718,7 +178121,6 @@ xref: BTO:0004149 xref: FMA:17028 xref: http://www.snomedbrowser.com/Codes/Details/18074002 xref: Ischial:spine -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013706 ! bone spine intersection_of: UBERON:0013706 ! bone spine intersection_of: part_of UBERON:0001274 ! ischium @@ -178736,7 +178138,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/256591004 xref: NCIT:C34253 xref: UMLS:C0230984 {source="ncithesaurus:Placental_Membrane"} is_a: UBERON:0000158 ! membranous layer -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: adjacent_to UBERON:0000922 ! embryo relationship: part_of UBERON:0001987 {source="BTO"} ! placenta @@ -178866,7 +178267,6 @@ xref: FMA:312260 xref: http://www.snomedbrowser.com/Codes/Details/280868008 xref: MA:0001239 is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] @@ -179022,7 +178422,6 @@ synonym: "ampullary sulcus" EXACT [] xref: FMA:74584 xref: http://www.snomedbrowser.com/Codes/Details/368954006 xref: MA:0002835 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla @@ -179238,6 +178637,7 @@ is_a: UBERON:0007633 ! nucleus of trapezoid body id: UBERON:0009054 name: open circulatory system comment: The Open Circulatory System is a system in which fluid (called hemolymph) in a cavity called the hemocoel bathes the organs directly with oxygen and nutrients and there is no distinction between blood and interstitial fluid; this combined fluid is called hemolymph or haemolymph +xref: FBbt:00005057 is_a: UBERON:0001009 {source="GO"} ! circulatory system [Term] @@ -179266,7 +178666,6 @@ comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit synonym: "edicula" RELATED SENSU [http://www.ncbi.nlm.nih.gov/pubmed/12625309] synonym: "faveoli" RELATED PLURAL [] synonym: "lung faveolus" EXACT [] -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0002048 ! lung @@ -179384,7 +178783,6 @@ synonym: "avian vocal organ" RELATED [] synonym: "syrinx" RELATED [] xref: http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy) xref: NCIT:C111323 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034681 ! vocal organ relationship: capable_of_part_of GO:0071625 ! vocalization behavior relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -179397,7 +178795,6 @@ def: "An anatomical wall that is part of a syrinx organ." [OBOL:automatic] synonym: "syrinx organ wall" EXACT [] synonym: "wall of syrinx" EXACT [http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy)] is_a: UBERON:0000060 ! anatomical wall -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0009074 ! syrinx organ relationship: part_of UBERON:0009074 ! syrinx organ @@ -179427,7 +178824,6 @@ id: UBERON:0009089 name: inner medulla vasa recta descending limb xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta [Term] @@ -179435,7 +178831,6 @@ id: UBERON:0009090 name: outer medulla vasa recta descending limb xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta [Term] @@ -179443,7 +178838,6 @@ id: UBERON:0009091 name: vasa recta ascending limb xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta [Term] @@ -179451,7 +178845,6 @@ id: UBERON:0009092 name: inner medulla vasa recta ascending limb xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta [Term] @@ -179459,7 +178852,6 @@ id: UBERON:0009093 name: outer medulla vasa recta ascending limb xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta [Term] @@ -179468,7 +178860,6 @@ name: tip of renal papilla synonym: "papillary tip" EXACT [KUPO:0001009] synonym: "papillary tips" EXACT PLURAL [KUPO:0001009] xref: KUPO:0001009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla @@ -179529,7 +178920,6 @@ relationship: part_of UBERON:0009101 ! ammocoete id: UBERON:0009100 name: nephric fold comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete @@ -179636,7 +179026,6 @@ is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton relationship: develops_from UBERON:0002342 {source="http://www.ncbi.nlm.nih.gov/pubmed/19924811"} ! neural crest relationship: has_part UBERON:0002418 ! cartilage tissue -relationship: never_in_taxon NCBITaxon:117570 ! Teleostomi relationship: part_of UBERON:0001042 ! chordate pharynx [Term] @@ -179685,6 +179074,7 @@ xref: EFO:0000229 xref: TAO:0001198 xref: XAO:0004208 xref: ZFA:0001198 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002546 ! cranial placode is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode relationship: develops_from UBERON:0005497 {source="ZFA"} ! non-neural ectoderm @@ -179763,7 +179153,6 @@ is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0005085 ! ectodermal placode intersection_of: has_potential_to_develop_into UBERON:0002540 ! lateral line system relationship: has_potential_to_develop_into UBERON:0002540 ! lateral line system -relationship: never_in_taxon NCBITaxon:32524 {source="http://tolweb.org/Amniota"} ! Amniota relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata [Term] @@ -179782,7 +179171,6 @@ is_a: UBERON:0000487 ! simple squamous epithelium is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0002166 ! endocardium of atrium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002078 ! right cardiac atrium @@ -179795,7 +179183,6 @@ id: UBERON:0009130 name: dorsal meso-duodenum xref: http://www.snomedbrowser.com/Codes/Details/361433003 xref: RETIRED_EHDAA2:0000411 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery @@ -179934,7 +179321,6 @@ name: pharyngeal region of foregut synonym: "pharyngeal region" EXACT [EMAPA:16549] xref: EMAPA:16549 xref: RETIRED_EHDAA2:0001454 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut @@ -179954,7 +179340,6 @@ xref: NCIT:C34178 xref: UMLS:C1517292 {source="ncithesaurus:Foramen_Primum"} xref: VHOG:0001470 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004154 ! atrial septum primum relationship: part_of UBERON:0004154 ! atrial septum primum @@ -179968,7 +179353,6 @@ xref: EMAPA:18015 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015060 ! sphenoid endochondral element intersection_of: UBERON:0015060 ! sphenoid endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -179998,7 +179382,6 @@ xref: EHDAA2:0001888 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015060 ! sphenoid endochondral element intersection_of: UBERON:0015060 ! sphenoid endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -180077,7 +179460,6 @@ id: UBERON:0009199 name: facial suture def: "Any suture between facial bones." [GO:0097096] is_a: UBERON:0009198 ! craniofacial suture -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0009198 ! craniofacial suture intersection_of: connects UBERON:0003462 {minCardinality="2"} ! facial bone relationship: connects UBERON:0003462 {notes="between two adjacent facial bones"} ! facial bone @@ -180114,7 +179496,6 @@ id: UBERON:0009202 name: vasa recta descending limb xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta [Term] @@ -180184,7 +179565,6 @@ id: UBERON:0009207 name: geschmacksstreifen def: "Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982)." [http://www.ncbi.nlm.nih.gov/pubmed/19295142] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001716 ! secondary palate [Term] @@ -180307,7 +179687,6 @@ def: "The posterior portion of the sphenoid bone developed in five separate part xref: FMA:321633 xref: http://www.snomedbrowser.com/Codes/Details/95950009 xref: Postsphenoid -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone @@ -180324,7 +179703,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226952 xref: http://www.snomedbrowser.com/Codes/Details/66938003 xref: NCIT:C32482 xref: UMLS:C0226952 {source="ncithesaurus:Dorsum_of_the_Tongue"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 {source="FMA"} ! tongue @@ -180413,7 +179791,6 @@ subset: emapa_ehdaa2 synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186] xref: EHDAA2:0001186 xref: EMAPA:16256 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0010378 {source="EHDAA2"} ! mesenchyme from splanchnopleure relationship: part_of UBERON:0001045 ! midgut @@ -180451,7 +179828,6 @@ synonym: "cavity of the pericardio-peritoneal canal" EXACT [VHOG:0000564] xref: EHDAA2:0001441 xref: EMAPA:16283 xref: VHOG:0000564 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 ! tube lumen intersection_of: UBERON:0005082 ! tube lumen intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal @@ -180464,7 +179840,6 @@ def: "Mesenchyme that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000570 xref: EMAPA:16364 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006235 ! foregut-midgut junction @@ -180606,7 +179981,6 @@ subset: emapa_ehdaa2 synonym: "hindgut associated mesenchyme" EXACT [EHDAA2:0000780] xref: EHDAA2:0000780 xref: EMAPA:16716 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001046 ! hindgut @@ -180623,7 +179997,6 @@ synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EHDAA2:0001045 xref: EMAPA:16850 is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002182 ! main bronchus relationship: part_of UBERON:0002182 ! main bronchus @@ -180636,7 +180009,6 @@ subset: emapa_ehdaa2 synonym: "trachea associated mesenchyme" EXACT [EHDAA2:0002067] xref: EHDAA2:0002067 xref: EMAPA:16854 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme @@ -180688,7 +180060,6 @@ xref: FMA:313717 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006757 ! lateral lingual swelling relationship: part_of UBERON:0006757 ! lateral lingual swelling @@ -180721,7 +180092,6 @@ xref: EMAPA:17361 xref: FMA:312691 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005868 ! maxillary prominence relationship: part_of UBERON:0005868 ! maxillary prominence @@ -181084,7 +180454,6 @@ id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, http://www.ncbi.nlm.nih.gov/pubmed/12075342] xref: FBbt:00000093 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001016 ! nervous system @@ -181126,7 +180495,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0262332 xref: NCIT:C33656 xref: Sulcus:limitans xref: UMLS:C0262332 {source="ncithesaurus:Sulcus_Limitans"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002422 ! fourth ventricle @@ -181136,8 +180504,8 @@ name: medulla oblongata sulcus limitans def: "A sulcus limitans of neural tube that is part of a future medulla oblongata." [OBOL:automatic] xref: EHDAA2:0001100 xref: EMAPA:17561 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005478 ! sulcus limitans of neural tube -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: develops_from UBERON:0009578 {source="EHDAA2"} ! myelencephalon sulcus limitans @@ -181150,7 +180518,6 @@ def: "A sulcus limitans of neural tube that is part of a future metencephalon." xref: EHDAA2:0001161 xref: EMAPA:17567 is_a: UBERON:0005478 ! sulcus limitans of neural tube -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: part_of UBERON:0010092 ! future metencephalon relationship: part_of UBERON:0010092 ! future metencephalon @@ -181161,7 +180528,6 @@ name: myelencephalon sulcus limitans def: "A sulcus limitans of neural tube that is part of a future myelencephalon." [OBOL:automatic] xref: EHDAA2:0001945 is_a: UBERON:0005478 ! sulcus limitans of neural tube -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: part_of UBERON:0010096 ! future myelencephalon relationship: part_of UBERON:0010096 ! future myelencephalon @@ -181491,7 +180857,7 @@ name: forebrain midbrain boundary neural plate synonym: "diencephalic-mesencephalic boundary neural plate" EXACT [ZFA:0007020] xref: TAO:0007020 xref: ZFA:0007020 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 {source="ZFA"} ! anatomical junction relationship: develops_from UBERON:0007288 {source="ZFA"} ! presumptive forebrain midbrain boundary relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate @@ -181517,6 +180883,8 @@ synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] xref: TAO:0007044 xref: ZFA:0007044 is_a: UBERON:0006598 ! presumptive structure +relationship: develops_from UBERON:0002346 ! neurectoderm +relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0007281 ! presumptive midbrain hindbrain boundary relationship: immediate_transformation_of UBERON:0007281 {notes="https://github.com/obophenotype/uberon/issues/438", source="Bgee:AN"} ! presumptive midbrain hindbrain boundary relationship: part_of UBERON:0003075 {source="ZFA"} ! neural plate @@ -181559,7 +180927,6 @@ synonym: "somitomeric mesoderm" RELATED [] xref: EHDAA2:0000736 xref: EHDAA:364 xref: EMAPA:16171 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005253 {source="EHDAA2"} ! head mesenchyme @@ -181570,7 +180937,6 @@ name: trunk paraxial mesoderm synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094] synonym: "trunk paraxial mesenchyme" RELATED [https://github.com/obophenotype/uberon/issues/30] xref: EHDAA2:0002094 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005256 ! trunk mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme @@ -181890,7 +181256,6 @@ xref: MA:0000400 xref: NCIT:C77955 xref: UMLS:C2698103 {source="ncithesaurus:Ampullary_Gland"} is_a: UBERON:0005399 {source="MA"} ! male reproductive gland -relationship: never_in_taxon NCBITaxon:9606 {source="MP"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:9347 ! Eutheria relationship: part_of UBERON:0001000 ! vas deferens @@ -181944,7 +181309,6 @@ xref: MA:0001252 xref: NCIT:C49226 xref: UMLS:C1707991 {source="ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue"} is_a: UBERON:0003581 ! eyelid connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003581 ! eyelid connective tissue intersection_of: part_of UBERON:0002072 ! hypodermis relationship: adjacent_to UBERON:0001457 ! skin of eyelid @@ -181964,7 +181328,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1511525 xref: MA:0001650 xref: NCIT:C32385 xref: UMLS:C1511525 {source="ncithesaurus:Cortical_Arch"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney @@ -181981,7 +181344,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245251000 xref: MA:0001680 xref: NCIT:C49273 xref: UMLS:C1709901 {source="ncithesaurus:Renal_Tubule_Basement_Membrane"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0001231 ! nephron tubule @@ -181998,7 +181360,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1707051 xref: MA:0001832 xref: NCIT:C49208 xref: UMLS:C1707051 {source="ncithesaurus:Bronchus_Basement_Membrane"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0002185 ! bronchus @@ -182014,8 +181375,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1710455 xref: MA:0001854 xref: NCIT:C49302 xref: UMLS:C1710455 {source="ncithesaurus:Trachea_Basement_Membrane"} -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0003126 ! trachea @@ -182034,7 +181393,6 @@ xref: NCIT:C52848 xref: UMLS:C1706783 {source="ncithesaurus:Alveolar_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0011595 ! jaw region @@ -182158,7 +181516,6 @@ def: "Ventral mesentery is the part of the peritoneum closest to the navel." [ht xref: EHDAA2:0004569 xref: http://www.snomedbrowser.com/Codes/Details/361430000 xref: Ventral:mesentery -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery @@ -182198,8 +181555,8 @@ name: nasal fin def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [https://doi.org/10.1002/aja.1001500308] xref: EHDAA2:0004548 xref: FMA:295940 +is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0005384 ! nasal cavity epithelium -is_a: UBERON:0011642 ! oral epithelium from ectoderm relationship: existence_ends_during UBERON:0000068 ! embryo stage relationship: part_of UBERON:0002424 {source="EHDAA2"} ! oral epithelium relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium @@ -182213,10 +181570,8 @@ xref: EHDAA2:0000188 xref: EHDAA:7840 xref: EHDAA:7984 xref: FMA:295942 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0009671 {notes="posterior portion", source="EHDAA2"} ! nasal fin relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium @@ -182289,6 +181644,7 @@ xref: EHDAA2:0001981 xref: EHDAA:1993 xref: EHDAA:2671 xref: EMAPA:16914 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013150 ! future brain vesicle relationship: develops_from UBERON:0006284 {source="EHDAA2"} ! early prosencephalic vesicle relationship: part_of UBERON:0001893 {source="EHDAA2"} ! telencephalon @@ -182440,6 +181796,7 @@ synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] xref: CALOHA:TS-2062 xref: EHDAA2:0004561 xref: FMA:63581 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001278 ! epithelium of large intestine intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001154 ! vermiform appendix @@ -182454,8 +181811,8 @@ name: dorsal pancreas subset: organ_slim synonym: "pancreatis dorsalis" RELATED [] xref: EHDAA2:0001371 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: develops_from UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium relationship: has_developmental_contribution_from UBERON:0003923 {source="cjm"} ! dorsal pancreatic bud @@ -182467,8 +181824,8 @@ name: ventral pancreas subset: organ_slim synonym: "pancreatis ventralis" RELATED [] xref: EHDAA2:0001393 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: develops_from UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium relationship: has_developmental_contribution_from UBERON:0003924 {source="cjm"} ! ventral pancreatic bud @@ -182490,7 +181847,6 @@ xref: NCIT:C102343 xref: VHOG:0001235 is_a: CARO:0000003 is_a: UBERON:0001081 ! endocardium of ventricle -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001081 ! endocardium of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle relationship: attaches_to UBERON:0006567 {source="FMA"} ! right ventricle myocardium @@ -182540,7 +181896,6 @@ def: "An anatomical cavity that surrounded_by a stomodeum." [OBOL:automatic] synonym: "lumen of stomatodaeum" EXACT [] synonym: "lumen of stomodeum" EXACT [] synonym: "stomatodeal cavity" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000930 ! stomodeum @@ -182560,7 +181915,6 @@ name: coronal organ def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [https://doi.org/10.1002/jez.b.21013] subset: organ_slim xref: BSA:0000122 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ relationship: only_in_taxon NCBITaxon:7712 ! Tunicata relationship: part_of UBERON:0009720 ! oral siphon @@ -182579,6 +181933,7 @@ name: tunicate siphon def: "Tubular appendage for drawing or ejecting fluids." [http://orcid.org/0000-0002-6601-2165] synonym: "siphon" EXACT [BTO:0002056] xref: BTO:0002056 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0009894 ! siphon primordium @@ -182767,7 +182122,6 @@ synonym: "lymph node medullary sinusoid" RELATED [] synonym: "medullary sinus" BROAD [] xref: EMAPA:37898 {source="MA:th"} xref: FMA:312359 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit relationship: channel_for UBERON:0002391 ! lymph relationship: part_of UBERON:0002007 ! medulla of lymph node @@ -182779,7 +182133,6 @@ def: "The dense rope-like structures of lymphatic tissue located between the med subset: pheno_slim synonym: "medullary cord" BROAD [] xref: EMAPA:37897 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: adjacent_to UBERON:0009744 ! lymph node medullary sinus relationship: part_of UBERON:0002007 ! medulla of lymph node @@ -182823,7 +182176,6 @@ def: "The primordial embryonic connective tissue of the developing limbs, autopo subset: pheno_slim synonym: "limb mesoderm" RELATED [Geisha:syn, NCBITaxon:8782] xref: EMAPA:32705 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002101 ! limb @@ -182866,8 +182218,6 @@ xref: FMA:69086 xref: http://www.snomedbrowser.com/Codes/Details/68594002 xref: MA:0001887 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex [Term] @@ -183056,7 +182406,6 @@ subset: non_informative xref: EHDAA2:0004737 xref: FMA:9690 xref: http://www.snomedbrowser.com/Codes/Details/361996004 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005906 ! serous sac is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0005906 ! serous sac @@ -183110,7 +182459,6 @@ xref: DHBA:10173 xref: FMA:276189 xref: http://en.wikipedia.org/wiki/Dorsolateral_prefrontal_cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -183123,7 +182471,6 @@ xref: BTO:0004249 xref: FMA:271599 xref: http://en.wikipedia.org/wiki/Anterior_cingulate_cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022353 {source="lexical"} ! posterior cingulate cortex relationship: capable_of_part_of GO:0002027 {source="Wikipedia"} ! regulation of heart rate relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex @@ -183158,7 +182505,6 @@ xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] @@ -183177,7 +182523,6 @@ xref: TAO:0001442 xref: ZFA:0001442 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0003052 {source="ZFA-def"} ! midbrain-hindbrain boundary relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1 relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip @@ -183259,7 +182604,6 @@ name: prostate field def: "A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, http://www.ncbi.nlm.nih.gov/pubmed/18977204] synonym: "prostate primordium" RELATED [] is_a: CARO:0000003 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007688 ! anlage @@ -183283,7 +182627,6 @@ xref: http://en.wikipedia.org/wiki/Zona_limitans_intrathalamica xref: TAO:0001344 xref: XAO:0004305 xref: ZFA:0001344 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0001900 ! ventral thalamus @@ -183343,7 +182686,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227813 xref: http://www.snomedbrowser.com/Codes/Details/279878007 xref: NCIT:C12316 xref: UMLS:C0227813 {source="ncithesaurus:Corpus_Uteri"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ @@ -183406,7 +182748,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228158 xref: http://www.snomedbrowser.com/Codes/Details/180933005 xref: NCIT:C32602 xref: UMLS:C0228158 {source="ncithesaurus:Fifth_Ventricle"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0004714 ! septum pellucidum @@ -183486,6 +182827,7 @@ id: UBERON:0009865 name: Hatschek's pit def: "A deep ciliated fossa on the dorsal midline of the buccal cavity (the region of the gut behind the mouth). Among other things, it secrets mucus which entraps food particles from the water[WP]." [http://en.wikipedia.org/wiki/Hatschek's_pit] xref: Hatschek's:pit +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006846 ! surface groove relationship: capable_of GO:0070254 ! mucus secretion relationship: develops_from UBERON:0009868 ! Hatschek's left diverticulum @@ -183504,7 +182846,6 @@ relationship: part_of UBERON:0001008 ! renal system [Term] id: UBERON:0009867 name: Hatschek's diverticulum -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 ! primordium relationship: only_in_taxon NCBITaxon:7737 {source="Wikipedia"} ! Branchiostoma relationship: part_of UBERON:0001042 ! chordate pharynx @@ -183557,7 +182898,6 @@ synonym: "nephrogenic tissue" RELATED [] xref: EMAPA:27721 xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png xref: MA:0002996 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001225 ! cortex of kidney @@ -183595,7 +182935,6 @@ synonym: "mesopodium skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "skeletal parts of mesopodium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0005022 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0006716 ! mesopodium region @@ -183704,7 +183043,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227428 xref: http://www.snomedbrowser.com/Codes/Details/245444007 xref: NCIT:C32067 xref: UMLS:C0227428 {source="ncithesaurus:Anal_Column"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: has_quality PATO:0001910 ! folded relationship: part_of UBERON:0000159 ! anal canal @@ -183721,7 +183059,6 @@ xref: BTO:0001155 xref: EMAPA:37906 {source="MA:th"} xref: FMA:74299 xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_ray_(anatomy) -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 {source="FMA"} ! organ part relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001225 {source="MP"} ! cortex of kidney @@ -183786,7 +183123,6 @@ synonym: "second heart field" EXACT [XAO:0004186] synonym: "SHF" RELATED [XAO:0004186] xref: XAO:0004186 is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: anterior_to UBERON:0004140 {source="http://www.ncbi.nlm.nih.gov/pubmed/17276708"} ! primary heart field @@ -183799,7 +183135,6 @@ id: UBERON:0009890 name: anterior intestinal portal def: "Opening of the foregut into the midgut." [http://www.drugs.com/dict/fovea-cardiaca.html] synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit relationship: adjacent_to UBERON:0001041 ! foregut relationship: adjacent_to UBERON:0001046 ! hindgut @@ -183882,7 +183217,6 @@ name: pole of cerebral hemisphere def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [http://en.wikipedia.org/wiki/Poles_of_cerebral_hemispheres] xref: http://en.wikipedia.org/wiki/Poles_of_cerebral_hemispheres is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] @@ -183913,6 +183247,7 @@ xref: FMA:52611 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1403 xref: http://www.snomedbrowser.com/Codes/Details/280188009 xref: MBA:229 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest @@ -183940,7 +183275,6 @@ xref: EFO:0003705 xref: TAO:0005042 xref: ZFA:0005042 is_a: UBERON:0000926 {source="ZFA"} ! mesoderm -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] @@ -183979,7 +183313,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0736382 xref: NCIT:C32894 xref: Renal:lobe xref: UMLS:C0736382 {source="ncithesaurus:Kidney_Lower_Lobe"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe intersection_of: part_of UBERON:0002113 ! kidney @@ -184022,8 +183355,8 @@ def: "An anatomical wall that is part of a ureter." [OBOL:automatic] synonym: "ureteral wall" EXACT [FMA:15888] xref: FMA:15888 xref: http://www.snomedbrowser.com/Codes/Details/279397004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000056 ! ureter relationship: has_part UBERON:0005742 ! adventitia @@ -184036,7 +183369,6 @@ name: kidney corticomedullary boundary def: "The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary." [MP:0011376] subset: pheno_slim xref: EMAPA:37886 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0000362 ! renal medulla @@ -184097,7 +183429,6 @@ is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009949 name: humeral diverticulum of clavicular air sac -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: continuous_with UBERON:0009948 ! clavicular air sac relationship: part_of UBERON:0000976 ! humerus @@ -184117,7 +183448,6 @@ xref: BAMS:MOB xref: Main_olfactory_bulb xref: MBA:507 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb [Term] @@ -184132,8 +183462,6 @@ xref: MA:0003149 xref: MBA:10702 xref: Subgranular:zone is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contains_process GO:0022008 {notes="granule cells", source="Wikipedia"} ! neurogenesis relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation @@ -184173,6 +183501,7 @@ xref: Neurogenic:placodes xref: TAO:0001309 xref: XAO:0004620 xref: ZFA:0001309 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002546 {source="cjm"} ! cranial placode intersection_of: UBERON:0005085 ! ectodermal placode intersection_of: has_potential_to_developmentally_contribute_to CL:0000540 ! neuron @@ -184247,7 +183576,6 @@ synonym: "inner circular muscle layer of esophagus" EXACT [FMA:67605] xref: EMAPA:37523 {source="MA:th"} xref: FMA:67605 xref: MA:0001574 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0001043 ! esophagus @@ -184263,7 +183591,6 @@ synonym: "outer longitudinal muscle layer of esophagus" EXACT [FMA:63573] xref: EMAPA:37524 {source="MA:th"} xref: FMA:63573 xref: MA:0001575 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle @@ -184340,7 +183667,6 @@ name: primitive superior sagittal sinus xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus @@ -184436,7 +183762,6 @@ def: "An anatomical cavity that surrounded_by a Rathke's pouch." [OBOL:automatic synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] xref: EHDAA2:0004138 xref: EMAPA:25037 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen is_a: UBERON:0007473 ! lumen of epithelial sac intersection_of: UBERON:0000464 ! anatomical space @@ -184478,7 +183803,6 @@ is_a: UBERON:0005806 ! portal system relationship: connects UBERON:0001898 ! hypothalamus relationship: connects UBERON:0002196 ! adenohypophysis relationship: connects UBERON:0002197 ! median eminence of neurohypophysis -relationship: never_in_taxon NCBITaxon:32443 {source="ISBN:0471888893"} ! Teleostei relationship: part_of UBERON:0000949 ! endocrine system [Term] @@ -184534,7 +183858,6 @@ xref: FMA:32855 xref: galen:FemoralCondyle xref: http://www.snomedbrowser.com/Codes/Details/304912006 xref: NCIT:C114186 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -184584,7 +183907,6 @@ xref: FMA:32867 xref: galen:LateralFemoralEpicondyle xref: http://en.wikipedia.org/wiki/Lateral_epicondyle_of_the_femur xref: http://www.snomedbrowser.com/Codes/Details/209275007 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle disjoint_from: UBERON:0009987 {source="lexical"} ! medial epicondyle of femur @@ -184602,7 +183924,6 @@ xref: FMA:32864 xref: galen:MedialFemoralEpicondyle xref: http://en.wikipedia.org/wiki/Medial_epicondyle_of_the_femur xref: http://www.snomedbrowser.com/Codes/Details/209172001 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur @@ -184616,7 +183937,6 @@ synonym: "condylus humeri" EXACT LATIN [] synonym: "humeral condyle" EXACT [FMA:23377] xref: FMA:23377 xref: http://www.snomedbrowser.com/Codes/Details/361778001 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -184631,7 +183951,6 @@ synonym: "tibial condyle" EXACT [AAO:0000899] xref: AAO:0000899 xref: http://www.snomedbrowser.com/Codes/Details/182062002 xref: Tibial:condyle -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -184741,8 +184060,8 @@ subset: pheno_slim synonym: "NEB" EXACT [MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] xref: EMAPA:37943 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 {source="MP"} ! anatomical structure -is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0000115 ! lung epithelium relationship: has_part CL:0000165 ! neuroendocrine cell relationship: part_of UBERON:0000115 ! lung epithelium @@ -184754,7 +184073,7 @@ def: "The vascularized and branched structures arising from the rodent trophobla subset: pheno_slim synonym: "placental labyrinth villi" RELATED PLURAL [] synonym: "villous of placental labyrinth" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0000061 ! anatomical structure relationship: contributes_to_morphology_of UBERON:0003946 ! placenta labyrinth relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth @@ -184790,6 +184109,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/256491001 xref: NCIT:C34135 xref: Placental:cotyledon xref: UMLS:C0242769 {source="ncithesaurus:Cotyledon"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: has_part UBERON:0007106 ! chorionic villus relationship: part_of UBERON:0002450 ! decidua @@ -184906,7 +184226,6 @@ synonym: "lower mandible" RELATED SENSU [] synonym: "mandibular beak" RELATED [] synonym: "rostrum mandibulare" RELATED [] is_a: UBERON:0003102 ! surface structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001710 ! lower jaw region relationship: part_of UBERON:0005094 ! beak @@ -184921,7 +184240,6 @@ is_a: UBERON:0015212 ! lateral structure relationship: composed_primarily_of CL:0000738 {source="Honma1983"} ! leukocyte relationship: contains_process GO:0030097 ! hemopoiesis relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism -relationship: never_in_taxon NCBITaxon:7863 {source="Wikipedia"} ! Holocephali relationship: only_in_taxon NCBITaxon:7778 {source="Wikipedia"} ! Elasmobranchii relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system @@ -184932,7 +184250,6 @@ id: UBERON:0010015 name: ventral patch of Leydig's organ def: "The ventralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000040 ! Leydig's organ [Term] @@ -184942,13 +184259,11 @@ def: "Coiled structure in the lumen of the small intestine that increases the le synonym: "intestinal spiral valve" EXACT [] synonym: "spiral valve" BROAD [] xref: Spiral:valve -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003978 {source="cjm"} ! valve is_a: UBERON:0035118 ! material entity in digestive tract disjoint_from: UBERON:0010017 ! spiral valve of cystic duct disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus relationship: located_in UBERON:0006909 ! lumen of digestive tract -relationship: never_in_taxon NCBITaxon:32523 {source="Wikipedia"} ! Tetrapoda relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0002108 ! small intestine @@ -184965,7 +184280,6 @@ xref: FMA:15855 xref: http://en.wikipedia.org/wiki/Spiral_valves_of_Heister xref: http://www.snomedbrowser.com/Codes/Details/270125000 is_a: UBERON:0003978 {source="FMA"} ! valve -is_a: UBERON:0004119 ! endoderm-derived structure disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus relationship: part_of UBERON:0001152 ! cystic duct @@ -184976,8 +184290,6 @@ def: "The spiral valve alternately blocks & unblocks the entrances to the left a xref: AAO:0010251 xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html is_a: UBERON:0003978 {source="cjm"} ! valve -is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: never_in_taxon NCBITaxon:32524 ! Amniota relationship: only_in_taxon NCBITaxon:8287 {evidence="NAS"} ! Sarcopterygii relationship: part_of UBERON:0003983 {source="AAO"} ! conus arteriosus @@ -184991,7 +184303,6 @@ xref: Vertebrates is_a: UBERON:0003102 {source="cjm"} ! surface structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 -relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0001004 ! respiratory system relationship: present_in_taxon NCBITaxon:119203 ! Selachii @@ -185026,8 +184337,9 @@ synonym: "dorsal branchial pouch 1 endoderm" RELATED [] synonym: "dorsal elongation of first pouch endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 1" EXACT [] synonym: "dorsal pharyngeal pouch 1 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 [Term] @@ -185038,8 +184350,9 @@ synonym: "ventral branchial pouch 1 endoderm" RELATED [] synonym: "ventral elongation of first pouch endoderm" RELATED [] synonym: "ventral pharyngeal pouch 1" EXACT [] synonym: "ventral pharyngeal pouch 1 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 [Term] @@ -185050,8 +184363,9 @@ synonym: "dorsal branchial pouch 2 endoderm" RELATED [] synonym: "dorsal elongation of second pouch endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 2" EXACT [] synonym: "dorsal pharyngeal pouch 2 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 [Term] @@ -185062,8 +184376,9 @@ synonym: "ventral branchial pouch 2 endoderm" RELATED [] synonym: "ventral elongation of second pouch endoderm" RELATED [] synonym: "ventral pharyngeal pouch 2" EXACT [] synonym: "ventral pharyngeal pouch 2 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 [Term] @@ -185079,8 +184394,8 @@ synonym: "dorsal wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002-6 xref: EHDAA2:0000409 xref: EMAPA:16758 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium -is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 [Term] @@ -185096,8 +184411,8 @@ synonym: "ventral wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002- xref: EHDAA2:0002173 xref: EMAPA:16759 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium -is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 [Term] @@ -185107,8 +184422,9 @@ synonym: "dorsal 4th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 4 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 4" EXACT [] synonym: "dorsal pharyngeal pouch 4 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] @@ -185118,8 +184434,9 @@ synonym: "ventral 4th branchial pouch" EXACT [] synonym: "ventral branchial pouch 4 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 4" EXACT [] synonym: "ventral pharyngeal pouch 4 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] @@ -185129,8 +184446,9 @@ synonym: "dorsal 5th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 5 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 5" EXACT [] synonym: "dorsal pharyngeal pouch 5 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] @@ -185140,8 +184458,9 @@ synonym: "ventral 5th branchial pouch" EXACT [] synonym: "ventral branchial pouch 5 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 5" EXACT [] synonym: "ventral pharyngeal pouch 5 endoderm" RELATED [] -is_a: UBERON:0003258 ! endoderm of foregut +is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] @@ -185265,6 +184584,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0017130 xref: http://www.snomedbrowser.com/Codes/Details/268338004 xref: NCIT:C32643 xref: UMLS:C0017130 {source="ncithesaurus:Fundic_Gland"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000325 ! gastric gland @@ -185284,7 +184604,6 @@ subset: grouping_class xref: BSA:0000123 xref: TADS:0000172 xref: TGMA:0001041 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -185384,7 +184703,6 @@ name: supralabial gland def: "Oral gland in reptiles situated immediately above the lip." [ISBN:0073040584] xref: Duvernoy's:gland is_a: UBERON:0010047 ! oral gland -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:32524 ! Amniota [Term] @@ -185393,7 +184711,6 @@ name: infralabial gland def: "Oral gland in reptiles situated immediately below the lip." [ISBN:0073040584] xref: Duvernoy's:gland is_a: UBERON:0010047 ! oral gland -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:32524 ! Amniota [Term] @@ -185401,7 +184718,6 @@ id: UBERON:0010051 name: dorsal patch of Leydig's organ def: "The dosralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000040 ! Leydig's organ [Term] @@ -185424,13 +184740,13 @@ is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: capable_of_part_of GO:0050959 ! echolocation relationship: capable_of_part_of GO:0050959 ! echolocation -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires [Term] id: UBERON:0010054 name: malleus cartilage element def: "A malleus endochondral element that is composed primarily of cartilage tissue." [OBOL:automatic] xref: EMAPA:18229 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015018 ! malleus endochondral element is_a: UBERON:0035131 ! auditory ossicle cartilage element intersection_of: UBERON:0015018 ! malleus endochondral element @@ -185474,7 +184790,6 @@ synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic] xref: EHDAA2:0000799 xref: EMAPA:17352 xref: http://www.snomedbrowser.com/Codes/Details/361420009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue @@ -185506,7 +184821,6 @@ synonym: "pharyngeal tubal ostium" EXACT [FMA:54979] xref: FMA:54979 xref: http://en.wikipedia.org/wiki/Pharyngeal_opening_of_auditory_tube xref: http://www.snomedbrowser.com/Codes/Details/368945008 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: continuous_with UBERON:0010061 ! lumen of nasopharynx relationship: part_of UBERON:0001042 ! chordate pharynx @@ -185518,7 +184832,6 @@ synonym: "nasopharyngeal luman" EXACT [] synonym: "nasopharynx cavity" EXACT [] synonym: "nasopharynx lumen" EXACT [FMA:55094] xref: FMA:55094 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001731 ! cavity of pharynx @@ -185534,7 +184847,6 @@ xref: FMA:285217 xref: MA:0003142 is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015813 ! middle ear epithelium relationship: develops_from UBERON:0010020 ! tubotympanic recess epithelium relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium @@ -185546,7 +184858,6 @@ name: tympanic cavity epithelium xref: EHDAA2:0004116 is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015813 ! middle ear epithelium relationship: develops_from UBERON:0010020 ! tubotympanic recess epithelium relationship: develops_from_part_of UBERON:0010020 {source="EHDAA2"} ! tubotympanic recess epithelium @@ -185572,7 +184883,6 @@ name: auditory meatus epithelium xref: EHDAA2:0004114 is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015814 ! outer ear epithelium relationship: develops_from UBERON:0005872 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389", source="EHDAA2"} ! 1st arch pharyngeal cleft relationship: part_of UBERON:0001691 {source="EHDAA2"} ! external ear @@ -185593,7 +184903,6 @@ xref: FMA:52880 xref: http://en.wikipedia.org/wiki/Tympanic_part_of_the_temporal_bone xref: http://www.snomedbrowser.com/Codes/Details/138773005 is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0002218 ! tympanic ring relationship: part_of UBERON:0001678 ! temporal bone @@ -185608,9 +184917,7 @@ synonym: "outer layer of tympanic membrane" EXACT [] synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] xref: FMA:56819 xref: http://www.snomedbrowser.com/Codes/Details/39725007 -is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0009647 ! tympanic membrane epithelium -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015814 ! outer ear epithelium intersection_of: UBERON:0009647 ! tympanic membrane epithelium intersection_of: part_of UBERON:0001352 ! external acoustic meatus @@ -185638,7 +184945,6 @@ subset: grouping_class synonym: "tympanic membrane layer" EXACT [FMA:56732] xref: FMA:56732 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002364 ! tympanic membrane [Term] @@ -185660,7 +184966,6 @@ id: UBERON:0010075 name: sacral neural crest def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [http://www.ncbi.nlm.nih.gov/books/NBK10065/, XB:curator] xref: XAO:0004192 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest @@ -185671,7 +184976,6 @@ def: "Tissue cavity consisting of intercommunicating trabecular spaces in the ca synonym: "trabecular network of bone tissue" EXACT [FMA:259332] synonym: "trabecular space network" RELATED [FMA:259332] xref: FMA:259332 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0008867 ! trabecular network of bone @@ -185767,7 +185071,6 @@ name: future hindbrain meninx def: "A multi-tissue structure that has the potential to develop into a meninx of hindbrain." [OBOL:automatic] synonym: "future hindbrain meninges" EXACT [EHDAA2:0000610] xref: EHDAA2:0000610 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0007645 ! future meninx @@ -185804,6 +185107,7 @@ id: UBERON:0010123 name: future facial nucleus def: "A gray matter that has the potential to develop into a facial nucleus." [OBOL:automatic] xref: EHDAA2:0004639 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0000127 ! facial nucleus @@ -185814,6 +185118,7 @@ id: UBERON:0010124 name: future inferior salivatory nucleus def: "A gray matter that has the potential to develop into a inferior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004643 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0002872 ! inferior salivatory nucleus @@ -185824,6 +185129,7 @@ id: UBERON:0010125 name: future superior salivatory nucleus def: "A gray matter that has the potential to develop into a superior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004644 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0002149 ! superior salivatory nucleus @@ -185834,6 +185140,7 @@ id: UBERON:0010126 name: future nucleus ambiguus def: "A gray matter that has the potential to develop into a nucleus ambiguus." [OBOL:automatic] xref: EHDAA2:0004647 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0001719 ! nucleus ambiguus @@ -186113,7 +185420,6 @@ synonym: "duct of greater vestibular gland" EXACT [FMA:20088] synonym: "greater vestibular gland duct" EXACT [FMA:20088] xref: Bartholin's:duct xref: FMA:20088 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011831 ! duct of vestibular gland intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000460 ! major vestibular gland @@ -186129,7 +185435,6 @@ synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091] synonym: "ductus glandulae bulbourethralis" EXACT LATIN [FMA:TA] xref: FMA:20091 xref: http://www.snomedbrowser.com/Codes/Details/279709005 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002366 ! bulbo-urethral gland @@ -186151,7 +185456,6 @@ id: UBERON:0010153 name: rumen papilla synonym: "rumen papillae" EXACT PLURAL [] xref: http://www.snomedbrowser.com/Codes/Details/43386000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008285 ! rumen epithelium @@ -186267,7 +185571,6 @@ def: "An anatomical cavity that surrounded_by a blood vessel." [OBOL:automatic] synonym: "blood vessel lumen" EXACT [] xref: FMA:312610 xref: http://www.snomedbrowser.com/Codes/Details/91747007 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001981 ! blood vessel @@ -186406,7 +185709,6 @@ name: region of neural crest xref: EMAPA:32737 xref: TAO:0000045 xref: ZFA:0000045 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002342 ! neural crest @@ -186442,8 +185744,6 @@ xref: BTO:0004695 xref: FMA:3740 xref: http://www.snomedbrowser.com/Codes/Details/362032000 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta relationship: part_of UBERON:0001496 {source="FMA"} ! ascending aorta @@ -186454,9 +185754,7 @@ def: "The point in the ascending aorta where the aortic sinuses end and the aort subset: pheno_slim synonym: "sinotubular ridge" EXACT [MP:0011572] xref: EMAPA:37951 {source="MA:th"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta @@ -186466,7 +185764,6 @@ name: Schweigger-Seidel sheath def: "A phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen." [http://en.wikipedia.org/wiki/Schweigger-Seidel_sheath, PMCID:PMC3204613] xref: Schweigger-Seidel:sheath is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0002106 ! spleen @@ -186524,8 +185821,8 @@ id: UBERON:0010183 name: liver trabecula def: "A trabecula that is part of a liver." [GO:0060344, OBOL:automatic] synonym: "hepatic trabecula" RELATED [] +synonym: "liver trabeculae" EXACT PLURAL [] is_a: UBERON:0000440 ! trabecula -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver @@ -186674,7 +185971,6 @@ synonym: "portal system of kidney" EXACT [] synonym: "renal-portal system" EXACT [AAO:0010518] xref: AAO:0010518 is_a: UBERON:0005806 ! portal system -relationship: never_in_taxon NCBITaxon:40674 {source="ISBN:0073040584"} ! Mammalia [Term] id: UBERON:0010197 @@ -186686,7 +185982,6 @@ xref: EHDAA2:0000306 xref: EMAPA:17855 xref: FMA:69323 is_a: UBERON:0005396 ! carotid artery segment -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches [Term] @@ -186736,7 +186031,6 @@ synonym: "tail vasculature" RELATED [ZFA:0005037] xref: TAO:0005037 xref: XAO:0004151 xref: ZFA:0005037 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0007812 ! post-anal tail @@ -186773,8 +186067,6 @@ xref: NCIT:C77657 xref: Nictitating:membrane xref: UMLS:C0028058 {source="ncithesaurus:Nictitating_Membrane"} is_a: UBERON:0001711 ! eyelid -relationship: never_in_taxon NCBITaxon:376913 {source="Wikipedia"} ! Haplorrhini -relationship: never_in_taxon NCBITaxon:8570 ! Serpentes relationship: part_of UBERON:0001811 ! conjunctiva relationship: present_in_taxon NCBITaxon:261739 relationship: present_in_taxon NCBITaxon:8292 ! Amphibia @@ -186795,7 +186087,6 @@ synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045] xref: FMA:59045 xref: http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva xref: http://www.snomedbrowser.com/Codes/Details/280686009 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005160 {source="Wikipedia"} ! vestigial structure relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva @@ -186844,7 +186135,6 @@ def: "Apparatus located between the lungs and the buccal cavity. This apparatus synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] xref: AAO:0000267 xref: EHDAA2:0000904 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034921 ! multi organ part structure relationship: composed_primarily_of UBERON:0001739 ! laryngeal cartilage @@ -186854,7 +186144,6 @@ relationship: part_of UBERON:0008895 ! splanchnocranium [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme @@ -186872,7 +186161,6 @@ id: UBERON:0010215 name: arytenoid swellings def: "Paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed." [http://www.medilexicon.com/medicaldictionary.php?t=87317] xref: EHDAA2:0000146 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010221 {source="EHDAA2"} ! laryngeal associated mesenchyme @@ -186899,7 +186187,6 @@ id: UBERON:0010221 name: laryngeal associated mesenchyme comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? xref: EHDAA2:0004085 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch @@ -186975,7 +186262,6 @@ id: UBERON:0010228 name: ruminal fluid def: "A portion of organism substance that is produced a rumen." [OBOL:automatic] xref: BTO:0004789 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: produced_by UBERON:0007365 ! rumen @@ -186992,6 +186278,7 @@ synonym: "reticular groove" BROAD SENSU [] synonym: "ruminant reticular groove" EXACT [] xref: BTO:0004789 xref: http://www.snomedbrowser.com/Codes/Details/86149002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0006846 ! surface groove relationship: channel_for UBERON:0001913 ! milk @@ -187052,7 +186339,6 @@ synonym: "thyroid stroma" EXACT [] xref: FMA:86304 xref: http://www.snomedbrowser.com/Codes/Details/157862000 is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002046 ! thyroid gland @@ -187113,9 +186399,7 @@ name: torus pylorus def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal." [http://medical-dictionary.thefreedictionary.com/torus+pyloricus] synonym: "torus pyloricus" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/14214007 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001166 ! pylorus @@ -187128,6 +186412,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227374 xref: NCIT:C92438 xref: Spiral:colon xref: UMLS:C0227374 {source="ncithesaurus:Spiral_Colon"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -187193,7 +186478,6 @@ xref: BTO:0001828 xref: Classification xref: http://www.snomedbrowser.com/Codes/Details/3034006 is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004868 ! tapetum lucidum of camera-type eye intersection_of: part_of UBERON:0001776 ! optic choroid relationship: adjacent_to UBERON:0000966 ! retina @@ -187273,7 +186557,6 @@ xref: FMA:49711 xref: http://en.wikipedia.org/wiki/Middle_meningeal_artery xref: http://www.snomedbrowser.com/Codes/Details/278100005 is_a: UBERON:0003474 ! meningeal artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -187298,7 +186581,6 @@ xref: UMLS:C0226187 {source="ncithesaurus:Anterior_Meningeal_Artery"} is_a: UBERON:0003474 ! meningeal artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0012318 {source="Wikipedia"} ! anterior ethmoidal artery relationship: part_of UBERON:0012318 ! anterior ethmoidal artery @@ -187342,8 +186624,8 @@ synonym: "pharyngeal arch 2 mesenchyme from neural crest" EXACT [] xref: EHDAA2:0000068 xref: EMAPA:16281 is_a: UBERON:0005689 ! 2nd arch mesenchyme +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue -is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0002342 ! neural crest @@ -187474,7 +186756,6 @@ synonym: "operculum" BROAD [HP:0100954] xref: http://www.snomedbrowser.com/Codes/Details/362351003 xref: Operculum:(brain) is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 ! frontal lobe [Term] @@ -187512,6 +186793,7 @@ name: arthropod hepatopancreas def: "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage." [BTO:0000597] synonym: "crustacean digestive gland" RELATED [] synonym: "midgut gland" RELATED [BTO:0000597] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005057 ! immune organ is_a: UBERON:0010264 ! hepatopancreas relationship: has_part CL:0000387 {source="http://www.ncbi.nlm.nih.gov/pubmed/18025161"} ! hemocyte (sensu Arthropoda) @@ -187535,7 +186817,6 @@ synonym: "internal part of filum terminale" EXACT [FMA:256524] xref: FMA:256524 xref: http://www.snomedbrowser.com/Codes/Details/315673007 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] @@ -187545,7 +186826,6 @@ synonym: "external part of filum terminale" EXACT [FMA:256526] xref: FMA:256526 xref: http://www.snomedbrowser.com/Codes/Details/315573001 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] @@ -187559,7 +186839,6 @@ xref: AAO:0010122 is_a: CARO:0000003 is_a: UBERON:0001601 {source="cjm"} ! extra-ocular muscle relationship: innervated_by UBERON:0001646 ! abducens nerve -relationship: never_in_taxon NCBITaxon:9606 {source="Wikipedia"} ! Homo sapiens relationship: present_in_taxon NCBITaxon:40674 ! Mammalia [Term] @@ -187577,7 +186856,6 @@ xref: http://palaeos.com/vertebrates/bones/gill_arches/images/ReptileHyoids.gif xref: http://www.snomedbrowser.com/Codes/Details/410035009 xref: MA:0003037 is_a: UBERON:0000075 ! subdivision of skeletal system -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton [Term] @@ -187588,7 +186866,6 @@ synonym: "hyoid bone zone" EXACT [FMA:59494] xref: FMA:59494 xref: http://www.snomedbrowser.com/Codes/Details/119534005 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: part_of UBERON:0001685 ! hyoid bone relationship: part_of UBERON:0001685 ! hyoid bone @@ -187600,7 +186877,6 @@ def: "Any anatomical space that is part of a vertebral column." [OBOL:automatic] synonym: "vertebral column opening" EXACT [AAO:0000700] synonym: "vertebral conduit" EXACT [] xref: AAO:0000700 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0001130 ! vertebral column @@ -187633,7 +186909,6 @@ synonym: "transverse pericardial" RELATED [http://en.wikipedia.org/wiki/Pericard synonym: "transverse pericardial sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] xref: http://www.snomedbrowser.com/Codes/Details/314273005 xref: Pericardial:sinus -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001074 {source="FMA-abduced"} ! pericardial cavity relationship: part_of UBERON:0010277 {source="MA-abduced"} ! mesocardium @@ -187659,7 +186934,6 @@ xref: FMA:59365 xref: http://www.snomedbrowser.com/Codes/Details/263344003 xref: Lacrimal:punctum is_a: UBERON:0000161 {source="FMA"} ! orifice -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] @@ -187685,7 +186959,6 @@ def: "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039] xref: TAO:0007039 xref: ZFA:0007039 is_a: UBERON:0000479 {source="ZFA"} ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003080 {source="ZFA"} ! anterior neural tube @@ -187698,6 +186971,7 @@ synonym: "seventh cranial nerve motor root" EXACT [FMA:53419] xref: DHBA:12863 xref: FMA:53419 xref: http://www.snomedbrowser.com/Codes/Details/280191009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004674 {source="FMA"} ! facial nerve root relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon @@ -187721,7 +186995,6 @@ is_a: UBERON:0003932 {source="ZFA"} ! cartilage element of chondrocranium is_a: UBERON:0010296 ! scleral skeletal element relationship: developmentally_induced_by UBERON:0001782 {gci_filler="NCBITaxon:9031", gci_relation="part_of", notes="Gallus gallus", source="http://www.ncbi.nlm.nih.gov/pubmed/17051547"} ! pigmented layer of retina relationship: develops_from UBERON:0002342 {source="PMID:17051547 - ossicles"} ! neural crest -relationship: never_in_taxon NCBITaxon:32525 {source="PMID:17051547 - but present in monotremes"} ! Theria relationship: part_of UBERON:0001773 {source="cjm"} ! sclera [Term] @@ -187733,8 +187006,6 @@ synonym: "sclerotic bone" EXACT [ZFA:0001411] synonym: "sclerotic ossicle" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/45632000 is_a: UBERON:0010296 ! scleral skeletal element -relationship: never_in_taxon NCBITaxon:7777 {source="PMID:17051547 Walls 1942"} ! Chondrichthyes -relationship: never_in_taxon NCBITaxon:7878 {source="PMID:17051547 Kemp 1999"} ! Dipnomorpha relationship: part_of UBERON:0001697 {source="ZFA"} ! orbit of skull relationship: part_of UBERON:0011156 ! facial skeleton @@ -187743,7 +187014,6 @@ id: UBERON:0010291 name: layer of sclera xref: Histology is_a: UBERON:0004923 ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001773 {source="cjm"} ! sclera [Term] @@ -187817,7 +187087,6 @@ relationship: part_of UBERON:0001773 ! sclera id: UBERON:0010296 name: scleral skeletal element is_a: UBERON:0010321 ! skeletal element of eye region -relationship: never_in_taxon NCBITaxon:40674 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051547"} ! Mammalia relationship: only_in_taxon NCBITaxon:7776 {source="http://www.ncbi.nlm.nih.gov/pubmed/17051547"} ! Gnathostomata relationship: part_of UBERON:0000019 ! camera-type eye @@ -187831,7 +187100,6 @@ is_a: UBERON:0002513 {source="ZFA"} ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010290 ! scleral ossicle relationship: develops_from UBERON:0010289 {source="ZFA"} ! scleral cartilage -relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: part_of UBERON:0002241 {source="ZFA"} ! chondrocranium [Term] @@ -187844,7 +187112,6 @@ is_a: UBERON:0003462 ! facial bone is_a: UBERON:0010290 ! scleral ossicle relationship: developmentally_induced_by UBERON:0010300 {source="http://www.ncbi.nlm.nih.gov/pubmed/16496288"} ! epithelial scleral papilla layer relationship: develops_in UBERON:0010299 ! scleral mesenchyme -relationship: never_in_taxon NCBITaxon:32443 ! Teleostei [Term] id: UBERON:0010299 @@ -187912,7 +187179,6 @@ xref: FMA:59023 xref: Gross_anatomy xref: http://www.snomedbrowser.com/Codes/Details/29445007 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000064 ! organ part intersection_of: subdivision_of UBERON:0001811 ! conjunctiva relationship: part_of UBERON:0001811 ! conjunctiva @@ -188191,6 +187457,7 @@ xref: EHDAA2:0004602 is_a: UBERON:0003104 {source="EHDAA2"} ! mesenchyme is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009526 ! maxillary process mesenchyme +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0006904 ! head mesenchyme from mesoderm intersection_of: part_of UBERON:0009526 ! maxillary process mesenchyme @@ -188366,6 +187633,7 @@ name: otic capsule pre-cartilage condensation def: "An otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004637 ! otic capsule intersection_of: UBERON:0004637 ! otic capsule intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -188379,7 +187647,7 @@ synonym: "future Reichert's cartilage" EXACT [] synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351] xref: EMAPA:17351 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest relationship: develops_from UBERON:0010254 {source="https://doi.org/10.1111/j.1469-7580.2005.00441.x", source="EHDAA2"} ! 2nd arch mesenchyme from neural crest [Term] @@ -188431,7 +187699,6 @@ synonym: "vertebra arch" NARROW [MA:0001453] synonym: "vertebral arch" NARROW [FMA:11946] xref: EMAPA:36614 xref: FMA:11946 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0002412 {source="FMA"} ! vertebra @@ -188570,7 +187837,6 @@ xref: FMA:70887 xref: http://www.snomedbrowser.com/Codes/Details/149885003 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001811 ! conjunctiva relationship: part_of UBERON:0001811 ! conjunctiva @@ -188583,7 +187849,6 @@ def: "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in dia synonym: "lobulus pulmonis" EXACT LATIN [FMA:75739, FMA:TA] xref: FMA:75739 xref: NCIT:C33428 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule intersection_of: part_of UBERON:0002048 ! lung @@ -188639,7 +187904,6 @@ xref: FMA:57455 xref: http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone xref: http://www.snomedbrowser.com/Codes/Details/306373001 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection disjoint_from: UBERON:0010373 ! uncinate process of pancreas relationship: part_of UBERON:0001679 ! ethmoid bone @@ -188712,7 +187976,6 @@ id: UBERON:0010378 name: mesenchyme from splanchnopleure def: "Mesenchyme that develops_from a splanchnopleure." [OBOL:automatic] xref: EHDAA2:0001122 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme @@ -188737,7 +188000,6 @@ xref: http://en.wikipedia.org/wiki/Superior_tarsal_muscle xref: http://www.snomedbrowser.com/Codes/Details/244775007 is_a: CARO:0000003 is_a: UBERON:0003386 ! smooth muscle of eye -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004773 ! superior eyelid tarsus relationship: continuous_with UBERON:0001604 {source="FMA"} ! levator palpebrae superioris @@ -188765,7 +188027,6 @@ name: lumen of laryngopharynx def: "An anatomical space that is enclosed by a hypopharynx." [OBOL:automatic] synonym: "laryngopharynx lumen" EXACT [FMA:55096] xref: FMA:55096 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001051 ! hypopharynx @@ -188837,7 +188098,6 @@ xref: FMA:54687 xref: http://www.snomedbrowser.com/Codes/Details/415639001 xref: MA:0001471 xref: Pterygoid:bone -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone is_a: UBERON:0012071 ! palate bone @@ -188853,7 +188113,6 @@ def: "An organ cavity that is part of a urethra." [OBOL:automatic] synonym: "urethral lumen" EXACT [FMA:19709] xref: FMA:19709 xref: http://www.snomedbrowser.com/Codes/Details/279432008 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000057 ! urethra @@ -188957,7 +188216,6 @@ xref: MA:0000754 xref: NCIT:C49776 xref: UMLS:C1710157 {source="ncithesaurus:Splenic_Marginal_Sinus"} is_a: UBERON:0001959 ! white pulp of spleen -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0010399 @@ -189025,7 +188283,6 @@ synonym: "suprabasal layer" BROAD [MP:0001233] synonym: "suprabasal layer of epidermis" EXACT [] xref: EMAPA:35315 xref: MA:0000808 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: part_of UBERON:0001003 ! skin epidermis @@ -189056,8 +188313,6 @@ xref: EMAPA:35489 xref: MA:0000965 xref: Subependymal:zone is_a: UBERON:0000119 {source="cjm"} ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000955 ! brain relationship: part_of UBERON:0002285 {source="MA"} ! telencephalic ventricle relationship: part_of UBERON:0004922 {source="Wikipedia"} ! postnatal subventricular zone @@ -189093,7 +188348,6 @@ xref: MA:0002010 xref: NCIT:C32076 xref: UMLS:C0226116 {source="ncithesaurus:Angular_Artery"} is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001612 ! facial artery relationship: part_of UBERON:0001612 ! facial artery @@ -189108,7 +188362,6 @@ synonym: "ocular surface" EXACT [] xref: EMAPA:35336 xref: MA:0002486 is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: superficial_to UBERON:0022288 ! surface of eyeball @@ -189134,7 +188387,6 @@ subset: pheno_slim synonym: "retroperitoneal fat depot" EXACT [] xref: MA:0002549 is_a: UBERON:0003427 ! abdominal fat pad -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0002358 ! peritoneum relationship: located_in UBERON:0003693 ! retroperitoneal space @@ -189149,7 +188401,6 @@ synonym: "periepididymal fat pad" EXACT [MP:0009288] xref: EMAPA:35316 xref: MA:0002550 is_a: UBERON:0003916 ! fat pad -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0001301 ! epididymis @@ -189206,7 +188457,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2703 xref: MA:0002712 xref: MBA:329 xref: NLX:81 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: capable_of_part_of GO:0050975 ! sensory perception of touch relationship: contributes_to_morphology_of UBERON:0008933 ! primary somatosensory cortex @@ -189319,7 +188569,6 @@ synonym: "spleen mantle zone" RELATED [CL:tm, MP:0002360] synonym: "splenic B cell corona" EXACT [MP:0002360] synonym: "splenic corona" BROAD [CL:tm] xref: EMAPA:37962 {source="MA:th"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010755 ! secondary follicle corona intersection_of: UBERON:0010755 ! secondary follicle corona intersection_of: part_of UBERON:0002106 ! spleen @@ -189397,7 +188646,6 @@ synonym: "cleft palate" RELATED [] synonym: "oropharyngeal naris" EXACT [] synonym: "palatal choana" EXACT [] synonym: "palatal cleft" RELATED [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010425 ! internal naris intersection_of: UBERON:0010425 ! internal naris intersection_of: connects UBERON:0001707 ! nasal cavity @@ -189405,7 +188653,6 @@ intersection_of: connects UBERON:0001729 ! oropharynx intersection_of: part_of UBERON:0001716 ! secondary palate relationship: connects UBERON:0001707 ! nasal cavity relationship: connects UBERON:0001729 ! oropharynx -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0001716 ! secondary palate [Term] @@ -189579,9 +188826,7 @@ id: UBERON:0010507 name: layer of dura mater def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space." [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] xref: FMA:231545 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002363 {source="FMA"} ! dura mater [Term] @@ -189694,7 +188939,6 @@ name: pelvic fin clasper def: "The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion." [http://fishbase.org/Glossary/Glossary.php?q=clasper] synonym: "clasper" RELATED [] synonym: "myxopterygium" EXACT [http://fishbase.org/Glossary/Glossary.php?q=clasper] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010516 ! clasper intersection_of: UBERON:0010516 ! clasper intersection_of: part_of UBERON:0000152 ! pelvic fin @@ -189844,6 +189088,7 @@ synonym: "developing nephron" BROAD [] synonym: "future nephron" EXACT [] synonym: "presumptive nephron" EXACT [] synonym: "primitive nephron" BROAD [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 {source="EHDAA2-inferred"} ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube @@ -189905,7 +189150,6 @@ id: UBERON:0010537 name: mesonephric nephron progenitor def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587] xref: ZFA:0005587 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010536 ! nephron progenitor intersection_of: UBERON:0010536 ! nephron progenitor intersection_of: part_of UBERON:0000080 ! mesonephros @@ -189975,7 +189219,6 @@ synonym: "skeleton of digits" RELATED [] xref: FMA:231315 xref: VSAO:0005028 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0012354 ! acropodium region @@ -190011,6 +189254,7 @@ xref: http://en.wikipedia.org/wiki/Metacarpus xref: MESH:A02.835.232.087.535 xref: VSAO:0005026 xref: XAO:0003208 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010546 ! metapodial skeleton is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton @@ -190045,6 +189289,7 @@ xref: MESH:D008684 xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA xref: VSAO:0005027 xref: XAO:0003212 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010546 ! metapodial skeleton is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton @@ -190067,7 +189312,6 @@ synonym: "skeletal parts of metapodium" EXACT [https://orcid.org/0000-0002-6601- synonym: "skeleton of metapodium" EXACT [] xref: VSAO:0005025 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0009877 ! metapodium region @@ -191114,6 +190358,7 @@ xref: EMAPA:37863 {source="MA:th"} xref: FMA:7184 xref: http://www.snomedbrowser.com/Codes/Details/416631005 xref: VSAO:0000215 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0010707 ! appendage girdle complex intersection_of: UBERON:0010707 ! appendage girdle complex @@ -191158,7 +190403,6 @@ id: UBERON:0010712 name: limb skeleton subdivision def: "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI] xref: VSAO:0005018 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: part_of UBERON:0002101 ! limb @@ -191308,7 +190552,6 @@ synonym: "tuberculum laterale (talus)" EXACT [FMA:33655] xref: FMA:33655 xref: http://www.snomedbrowser.com/Codes/Details/87573005 xref: Os:trigonum -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0002387 ! pes @@ -191350,7 +190593,6 @@ xref: EHDAA2:0003449 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0009891 ! facial mesenchyme -is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -191573,7 +190815,6 @@ synonym: "wing of the ilium" EXACT [http://en.wikipedia.org/wiki/Wing_of_ilium] xref: FMA:42826 xref: http://en.wikipedia.org/wiki/Wing_of_ilium xref: http://www.snomedbrowser.com/Codes/Details/182024000 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ property_value: dc-contributor https://github.com/alex-dececchi property_value: dc-contributor https://github.com/cmungall @@ -191589,7 +190830,6 @@ synonym: "ilium body" EXACT [FMA:42825] xref: FMA:42825 xref: http://en.wikipedia.org/wiki/Body_of_ilium xref: http://www.snomedbrowser.com/Codes/Details/292524005 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -191645,8 +190885,6 @@ is_a: UBERON:0003462 ! facial bone is_a: UBERON:0008907 {source="ISBN:0073040584"} ! dermal bone relationship: adjacent_to UBERON:0000209 ! tetrapod frontal bone relationship: adjacent_to UBERON:0001680 ! lacrimal bone -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: only_in_taxon NCBITaxon:8287 {source="Wikipedia"} ! Sarcopterygii relationship: part_of UBERON:0003113 {notes="orbital series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0011156 ! facial skeleton @@ -191674,7 +190912,6 @@ xref: EMAPA:18339 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005253 ! head mesenchyme is_a: UBERON:0005863 ! cartilaginous condensation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015051 ! exoccipital endochondral element intersection_of: UBERON:0015051 ! exoccipital endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -191751,7 +190988,6 @@ synonym: "spleen FDC network" EXACT [MP:0008473] synonym: "splenic follicular dendritic cell network" EXACT [MP:0008473] xref: EMAPA:37963 {source="MA:th"} is_a: UBERON:0001744 ! lymphoid tissue -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004042 ! spleen secondary B follicle [Term] @@ -191805,7 +191041,6 @@ synonym: "supraglenoid tuberosity" EXACT [FMA:23263] synonym: "tuberculum supraglenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Supraglenoid_tubercle] xref: FMA:23263 xref: Supraglenoid:tubercle -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006633 ! coracoid process of scapula @@ -191986,7 +191221,6 @@ synonym: "humeral capitulum" EXACT [FMA:23373] xref: FMA:23373 xref: http://en.wikipedia.org/wiki/Capitulum_of_the_humerus xref: http://www.snomedbrowser.com/Codes/Details/282816008 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0009988 {source="FMA"} ! condyle of humerus @@ -192181,6 +191415,7 @@ relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensatio id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A skeletal element that is part of a limb and composed of pre-cartilage tissue." [http://orcid.org/0000-0002-6601-2165] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0015061 ! limb endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -192275,7 +191510,6 @@ name: ectethmoid def: "Either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit." [http://www.merriam-webster.com/medical/ectethmoid] synonym: "dorsal nasal capsule" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/21270050] is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001679 ! ethmoid bone [Term] @@ -192325,11 +191559,10 @@ def: "An endochondral element of the nasal capsule that forms septum between nas synonym: "mesethmoid" RELATED [AAO:0000303] synonym: "ventral nasal capsule" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/21270050] xref: AAO:0000303 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 {source="TAO"} ! endochondral element relationship: develops_from UBERON:0005945 {source="TAO"} ! neurocranial trabecula relationship: dubious_for_taxon NCBITaxon:8292 {editor_note="check AAO"} ! Amphibia -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0002241 {source="TAO"} ! chondrocranium relationship: part_of UBERON:0011241 {source="ISBN:0073040584"} ! ethmoid region @@ -192346,7 +191579,6 @@ is_a: UBERON:0005928 ! external naris intersection_of: UBERON:0005928 ! external naris intersection_of: intersects_midsagittal_plane_of UBERON:0000033 ! head relationship: intersects_midsagittal_plane_of UBERON:0000033 ! head -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires relationship: present_in_taxon NCBITaxon:7762 ! Myxinidae [Term] @@ -192400,8 +191632,6 @@ xref: VSAO:0000127 is_a: UBERON:0003828 ! abdominal segment bone is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008907 {source="VSAO"} ! dermal bone -relationship: never_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia -relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: only_in_taxon NCBITaxon:32524 {source="Wikipedia"} ! Amniota relationship: part_of UBERON:0006635 {source="ISBN:0073040584"} ! anterior abdominal wall relationship: part_of UBERON:0014478 ! rib skeletal system @@ -192505,7 +191735,6 @@ name: paraglossale def: "An arrowhead-shaped bone in the avian hyoid apparatus which forms the base of the tongue." [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] synonym: "paraglossale bone" EXACT [] is_a: UBERON:0001474 ! bone element -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: located_in UBERON:0010033 ! posterior part of tongue relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -192516,9 +191745,7 @@ name: opisthotic def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." xref: AAO:0010835 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule [Term] @@ -192644,7 +191871,6 @@ xref: UMLS:C0224214 {source="ncithesaurus:Cricopharyngeus_Muscle"} is_a: CARO:0000003 is_a: UBERON:0000933 ! pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010938 ! muscle belly relationship: has_muscle_origin UBERON:0002375 ! cricoid cartilage relationship: innervated_by UBERON:0001759 {source="Wikipedia"} ! vagus nerve @@ -192760,7 +191986,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/244805001 is_a: CARO:0000003 is_a: UBERON:0000933 ! pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010938 ! muscle belly relationship: has_muscle_origin UBERON:0001738 {source="dbpedia"} ! thyroid cartilage relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor @@ -192809,8 +192034,6 @@ synonym: "masseter, deep" RELATED [FEED:FEED] synonym: "zygomaticomandibularis" EXACT [FEED:FEED] synonym: "zygomaticomandibularis muscle" EXACT [] is_a: UBERON:0001630 ! muscle organ -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001597 ! masseter muscle [Term] @@ -192828,8 +192051,6 @@ synonym: "musculus digastricus" RELATED LATIN [http://en.wikipedia.org/wiki/Diga xref: FMA:46297 xref: http://www.snomedbrowser.com/Codes/Details/360772008 is_a: UBERON:0000933 ! pharyngeal muscle -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010938 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! muscle belly is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -192866,7 +192087,6 @@ relationship: attaches_to UBERON:0001685 ! hyoid bone relationship: develops_from UBERON:0004362 ! pharyngeal arch 1 relationship: has_muscle_origin UBERON:0001684 ! mandible relationship: innervated_by UBERON:0011322 {notes="mandibular division (V3) of the trigeminal (CN V) via the mylohyoid nerve", source="Wikipedia"} ! mylohyoid nerve -relationship: never_in_taxon NCBITaxon:9599 ! Pongo relationship: superficial_to UBERON:0001564 ! mylohyoid muscle [Term] @@ -193055,7 +192275,6 @@ id: UBERON:0010955 name: trapezius pre-muscle mass xref: EHDAA2:0002079 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation -is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -193169,7 +192388,6 @@ relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervica id: UBERON:0010982 name: latissimus dorsi pre-muscle mass xref: EHDAA2:0000933 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -193178,7 +192396,6 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010983 name: levator scapulae pre-muscle mass xref: EHDAA2:0000993 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -193187,7 +192404,6 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010984 name: pectoral pre-muscle mass xref: EHDAA2:0001423 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -193196,7 +192412,6 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010985 name: rhomboid pre-muscle mass xref: EHDAA2:0001636 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -193224,7 +192439,6 @@ relationship: part_of UBERON:0002376 {source="EHDAA2"} ! cranial muscle id: UBERON:0010988 name: teres major pre-muscle mass xref: EHDAA2:0002005 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -193277,7 +192491,6 @@ synonym: "ulnar coronoid process" EXACT [] xref: FMA:23616 xref: http://en.wikipedia.org/wiki/Coronoid_process_of_the_ulna xref: http://www.snomedbrowser.com/Codes/Details/181951002 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 {source="FMA"} ! anatomical projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006822 {source="FMA"} ! proximal epiphysis of ulna @@ -193295,8 +192508,6 @@ synonym: "pars profunda of masseter muscle" EXACT [] xref: FMA:49003 xref: http://www.snomedbrowser.com/Codes/Details/142309002 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: in_deep_part_of UBERON:0001597 ! masseter muscle relationship: part_of UBERON:0001597 ! masseter muscle @@ -193470,7 +192681,6 @@ name: iliac fossa xref: FMA:75316 xref: http://www.snomedbrowser.com/Codes/Details/182341009 xref: NCIT:C103454 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -193659,8 +192869,6 @@ xref: MA:0000248 xref: Perilymphatic:duct xref: ZFA:0005461 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 {source="MA"} ! internal ear relationship: surrounds UBERON:0001845 ! perilymph @@ -193670,7 +192878,6 @@ name: endolymphatic space def: "Endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space] xref: FMA:77823 xref: http://www.snomedbrowser.com/Codes/Details/279856000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth relationship: part_of UBERON:0002295 ! scala media @@ -193712,7 +192919,7 @@ xref: EFO:0003659 xref: TAO:0001272 xref: VHOG:0000511 xref: ZFA:0001272 -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 {source="cjm"} ! subdivision of skeleton property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/mellybelly @@ -193858,7 +193065,6 @@ xref: EMAPA:19010 xref: FMA:25018 xref: http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens xref: http://www.snomedbrowser.com/Codes/Details/182362005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005174 ! dorsal region element relationship: part_of UBERON:0000220 {inconsistent_with="Wikipedia", source="FMA"} ! atlanto-occipital joint @@ -194103,7 +193309,6 @@ is_a: UBERON:0001485 ! knee joint relationship: connects UBERON:0000979 ! tibia relationship: connects UBERON:0000981 ! femur relationship: connects UBERON:0002446 ! patella -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000978 ! leg [Term] @@ -194129,7 +193334,6 @@ id: UBERON:0011130 name: temporomandibular joint primordium synonym: "temporo-mandibular joint primordium" EXACT [EMAPA:18714] xref: EMAPA:18714 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0001694 {source="EMAPA"} ! petrous part of temporal bone @@ -194267,8 +193471,6 @@ synonym: "superficial layer of masseter" EXACT [FMA:49000] synonym: "superficial part of masseter" EXACT [FMA:49000] xref: FMA:49000 xref: http://www.snomedbrowser.com/Codes/Details/142208007 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_superficial_part_of UBERON:0001597 ! masseter muscle @@ -194297,7 +193499,6 @@ synonym: "ossicle of axial skeleton" EXACT [OBOL:automatic] synonym: "ossicle of postcranial-axial skeleton" EXACT [OBOL:automatic] synonym: "vertebral ossicle" RELATED [OBOL:automatic] xref: VSAO:0000133 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010911 ! ossicle intersection_of: UBERON:0010911 ! ossicle intersection_of: part_of UBERON:0002090 ! postcranial axial skeleton @@ -194368,8 +193569,7 @@ relationship: produces UBERON:0012245 ! silk id: UBERON:0011147 name: Verson's gland def: "A gland found in the larvae of lepidoptera. Each gland is made of three cells: the secretory cell, the reservoir cell and the canal cell." [http://orcid.org/0000-0002-6601-2165] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0019319 ! exocrine gland of integumental system +is_a: UBERON:0002365 ! exocrine gland relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0007376 ! outer epithelium @@ -194453,7 +193653,6 @@ xref: AAO:0010371 xref: TAO:0001401 xref: XAO:0003178 xref: ZFA:0001401 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton @@ -194469,7 +193668,6 @@ xref: EFO:0003684 xref: TAO:0001402 xref: XAO:0003179 xref: ZFA:0001402 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton @@ -194581,7 +193779,6 @@ synonym: "supra-occipital cartilage condensation" EXACT [] synonym: "supraoccipital cartilage condensation" EXACT [EMAPA:18341] xref: EMAPA:18341 is_a: UBERON:0003932 ! cartilage element of chondrocranium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015015 ! supraoccipital endochondral element intersection_of: UBERON:0015015 ! supraoccipital endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -194711,7 +193908,6 @@ intersection_of: connects UBERON:0004744 ! articular/anguloarticular intersection_of: connects UBERON:0006597 ! quadrate bone relationship: connects UBERON:0004744 ! articular/anguloarticular relationship: connects UBERON:0006597 ! quadrate bone -relationship: never_in_taxon NCBITaxon:32525 {source="http://evolution.berkeley.edu"} ! Theria [Term] id: UBERON:0011171 @@ -194771,7 +193967,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753 xref: MA:0000926 xref: MBA:359 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0011177 {source="lexical"} ! posterior division of bed nuclei of stria terminalis relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis @@ -194823,7 +194018,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2754 xref: MA:0000930 xref: MBA:367 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis [Term] @@ -194874,7 +194068,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1522442 xref: http://www.snomedbrowser.com/Codes/Details/279712008 xref: NCIT:C32384 xref: UMLS:C1522442 {source="ncithesaurus:Corpus_Spongiosum"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008324 ! erectile tissue is_a: UBERON:0009010 ! periurethral tissue @@ -194943,7 +194136,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1512275 xref: http://www.snomedbrowser.com/Codes/Details/181934009 xref: NCIT:C32700 xref: UMLS:C1512275 {source="ncithesaurus:Greater_Tuberosity"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus @@ -194963,7 +194155,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/181935005 xref: Lesser:tubercle xref: NCIT:C32983 xref: UMLS:C0223687 {source="ncithesaurus:Lesser_Tuberosity"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus @@ -194999,7 +194190,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/300538005 xref: NCIT:C33025 xref: UMLS:C0221991 {source="ncithesaurus:Lunula"} xref: unula:(anatomy) -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001705 ! nail @@ -195139,7 +194329,6 @@ xref: NCIT:C63862 xref: Prostatic:utricle xref: UMLS:C0227736 {source="ncithesaurus:Prostatic_Utricle"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra [Term] @@ -195191,7 +194380,6 @@ xref: NCIT:C54210 xref: UMLS:C1711256 {source="ncithesaurus:Urachal_Epithelium"} is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0006555 ! excretory tube -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002068 ! urachus relationship: part_of UBERON:0002068 ! urachus @@ -195201,7 +194389,6 @@ id: UBERON:0011203 name: urachus mesenchyme def: "Mesenchyme that is part of a developing urachus." [OBOL:automatic] xref: EHDAA2:0004726 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002068 ! urachus @@ -195225,7 +194412,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/261416006 xref: NCIT:C33448 xref: Recto-vesical:pouch xref: UMLS:C0230301 {source="ncithesaurus:Recto-Vesical_Pouch"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002358 ! peritoneum @@ -195339,7 +194525,6 @@ subset: upper_level synonym: "cell part cluster of neuraxis" EXACT [FMA:83143] synonym: "neuraxis layer" EXACT [FMA:83143] xref: FMA:83143 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: part_of UBERON:0001017 ! central nervous system @@ -195426,7 +194611,6 @@ synonym: "ora serrata retinae" EXACT LATIN [FMA:TA] xref: FMA:58600 xref: http://www.snomedbrowser.com/Codes/Details/280612002 xref: Ora:serrata -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: connects UBERON:0000966 ! retina relationship: connects UBERON:0001775 ! ciliary body @@ -195537,7 +194721,6 @@ xref: EFO:0003685 xref: TAO:0001405 xref: ZFA:0001405 is_a: UBERON:0003932 {source="TAO"} ! cartilage element of chondrocranium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0005945 {source="ISBN:0073040584"} ! neurocranial trabecula relationship: part_of UBERON:0002517 {source="FMA"} ! basicranium relationship: part_of UBERON:0011241 {source="AAO"} ! ethmoid region @@ -195558,7 +194741,6 @@ xref: http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone xref: http://www.snomedbrowser.com/Codes/Details/369005006 xref: MA:0003126 is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001679 {source="FMA"} ! ethmoid bone [Term] @@ -195571,7 +194753,6 @@ synonym: "infra-orbital canal" BROAD [FMA:59048] synonym: "infraorbital canal" BROAD [http://en.wikipedia.org/wiki/Infraorbital_canal] xref: FMA:59048 xref: Infraorbital:canal -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0004646 ! infraorbital artery @@ -195701,8 +194882,8 @@ id: UBERON:0011255 name: Eimer's organ def: "A sensory organ in which the epidermis is modified to form bulbous papillae. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [http://en.wikipedia.org/wiki/Eimer's_organ] xref: Eimer's:organ +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000242 ! Merkel cell relationship: has_part UBERON:0003719 ! Pacinian corpuscle relationship: only_in_taxon NCBITaxon:9373 ! Talpidae @@ -195714,10 +194895,6 @@ name: rhinarium def: "Moist, hairless, crenelated area around nostrils of some mammals." [http://anthro.palomar.edu/primate/glossary.htm, http://en.wikipedia.org/wiki/Rhinarium] xref: http://en.wikipedia.org/wiki/Rhinarium is_a: UBERON:0003102 ! surface structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: never_in_taxon NCBITaxon:9475 ! Tarsiidae -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0007827 ! external nose relationship: surrounds UBERON:0005928 ! external naris @@ -195726,7 +194903,6 @@ relationship: surrounds UBERON:0005928 ! external naris id: UBERON:0011263 name: femoral gland def: "A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong]." [ISBN:0073040584] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: only_in_taxon NCBITaxon:8509 ! Squamata relationship: part_of UBERON:0000376 {source="ISBN:0073040584"} ! hindlimb stylopod @@ -195738,7 +194914,6 @@ id: UBERON:0011264 name: femoral pore def: "Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh." [http://en.wikipedia.org/wiki/Femoral_pore] xref: Femoral:pore -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0011263 ! femoral gland @@ -195787,8 +194962,6 @@ xref: Quadratojugal:bone is_a: UBERON:0002514 {source="AAO-def"} ! intramembranous bone is_a: UBERON:0008907 ! dermal bone is_a: UBERON:0011597 ! bone of upper jaw -relationship: never_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia -relationship: never_in_taxon NCBITaxon:8509 {source="Wikipedia"} ! Squamata relationship: part_of UBERON:0003113 {notes="temporal series", source="ISBN:0073040584"} ! dermatocranium relationship: part_of UBERON:0003277 {source="AAO"} ! skeleton of upper jaw @@ -195799,9 +194972,7 @@ def: "A secondary tongue located below the primary tongue in prosimian primates synonym: "second tongue" RELATED [http://en.wikipedia.org/wiki/Sublingua] synonym: "under-tongue" RELATED [http://en.wikipedia.org/wiki/Sublingua] xref: http://en.wikipedia.org/wiki/Sublingua -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013765 ! digestive system element -relationship: never_in_taxon NCBITaxon:9606 {source="Wikipedia"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:9347 {source="Wikipedia"} ! Eutheria relationship: part_of UBERON:0000165 ! mouth @@ -196046,7 +195217,6 @@ name: rostral organ def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [http://en.wikipedia.org/wiki/Rostral_organ] comment: classification as electric organ is putative xref: Rostral:organ -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0010521 ! electroreceptor organ relationship: innervated_by UBERON:0000348 ! ophthalmic nerve @@ -196092,7 +195262,6 @@ synonym: "uterine submucosa" RELATED [] xref: BTO:0002116 xref: http://www.snomedbrowser.com/Codes/Details/245489008 is_a: UBERON:0000009 ! submucosa -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0003889 ! fallopian tube @@ -196183,8 +195352,6 @@ synonym: "temporalis pars anterior" EXACT [MFMO:0000087] synonym: "temporalis pars superficialis" EXACT [MFMO:0000087] xref: MFMO:0000087 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_superficial_part_of UBERON:0001598 ! temporalis muscle @@ -196206,8 +195373,6 @@ synonym: "temporalis pars posterior" EXACT [MFMO:0000086] synonym: "temporalis pars profunda" EXACT [MFMO:0000086] synonym: "temporalis posterior head" EXACT [MFMO:0000086] xref: MFMO:0000086 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_deep_part_of UBERON:0001597 ! masseter muscle @@ -196221,8 +195386,6 @@ def: "The suprazygomatic part of the temporalis muscle is a separable part of th synonym: "temporalis pars suprazygomatica" EXACT [MFMO:0000088] synonym: "zygomatic temporalis" EXACT [MFMO:0000088] xref: MFMO:0000088 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle @@ -196233,8 +195396,6 @@ def: "The pars reflexa is a separable part of the superficial masseter muscle th synonym: "masseter, pars reflexa" EXACT [FEED:FEED] synonym: "pars reflexa" BROAD [FEED:FEED] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011140 ! superficial part of masseter muscle [Term] @@ -196248,7 +195409,6 @@ xref: FMA:52827 xref: http://en.wikipedia.org/wiki/Body_of_mandible xref: http://www.snomedbrowser.com/Codes/Details/244684002 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001684 {source="FMA"} ! mandible [Term] @@ -196257,7 +195417,6 @@ name: masseteric fossa def: ".The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryM.html] synonym: "masseteric cavity" RELATED [] is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001684 {source="FMA"} ! mandible [Term] @@ -196293,8 +195452,6 @@ relationship: attaches_to UBERON:0003999 ! hyoid bone body id: UBERON:0011313 name: posterior subdivision of masseter synonym: "masseter, posterior" EXACT [FEED:FEED] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_posterior_side_of UBERON:0001597 ! masseter muscle @@ -196306,8 +195463,6 @@ relationship: part_of UBERON:0001597 ! masseter muscle id: UBERON:0011314 name: anterior subdivision of masseter synonym: "masseter, anterior" EXACT [FEED:FEED] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_anterior_side_of UBERON:0001597 ! masseter muscle @@ -196391,7 +195546,6 @@ xref: http://en.wikipedia.org/wiki/Capsule_of_temporomandibular_joint xref: http://www.snomedbrowser.com/Codes/Details/303404000 xref: MFMO:0000046 is_a: UBERON:0001484 ! articular capsule -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001484 ! articular capsule intersection_of: part_of UBERON:0003700 ! temporomandibular joint @@ -196418,7 +195572,6 @@ xref: http://en.wikipedia.org/wiki/Articular_disk_of_the_temporomandibular_joint xref: http://www.snomedbrowser.com/Codes/Details/282433007 xref: MESH:D019224 is_a: UBERON:0007844 {source="FMA"} ! cartilage element -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003700 {source="BTO"} ! temporomandibular joint @@ -196430,7 +195583,6 @@ xref: FMA:57070 xref: http://www.snomedbrowser.com/Codes/Details/127861009 xref: Ligaments is_a: UBERON:0008846 ! skeletal ligament -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0008846 ! skeletal ligament intersection_of: part_of UBERON:0003700 ! temporomandibular joint @@ -196500,6 +195652,7 @@ xref: BAMS:sln xref: FMA:6239 xref: http://en.wikipedia.org/wiki/Superior_laryngeal_nerve xref: http://www.snomedbrowser.com/Codes/Details/279928006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: branching_part_of UBERON:0001759 {source="FMA"} ! vagus nerve @@ -196537,7 +195690,6 @@ name: surface of mandible def: "An anatomical surface that is part of a mandible." [OBOL:automatic] synonym: "mandibular surface" EXACT [FMA:57558] xref: FMA:57558 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0001684 ! mandible @@ -196571,7 +195723,6 @@ synonym: "raphe pharyngis" EXACT [http://en.wikipedia.org/wiki/Pharyngeal_raphe] xref: FMA:55077 xref: http://www.snomedbrowser.com/Codes/Details/179763009 xref: Pharyngeal:raphe -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003570 ! respiratory system connective tissue disjoint_from: UBERON:0011346 ! palatine raphe relationship: part_of UBERON:0001042 ! chordate pharynx @@ -196584,7 +195735,6 @@ synonym: "raphe palati" EXACT [http://en.wikipedia.org/wiki/Palatine_raphe] xref: FMA:75111 xref: Palatine:raphe is_a: UBERON:0003566 ! head connective tissue -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001716 ! secondary palate [Term] @@ -196635,7 +195785,6 @@ synonym: "Reissner's fibre" EXACT [] xref: NLX:151878 xref: Reissner's:fiber is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: composed_primarily_of PR:000015658 ! SCO-spondin relationship: part_of UBERON:0001017 ! central nervous system relationship: present_in_taxon NCBITaxon:7711 {source="ISBN:0471888893"} ! Chordata @@ -196646,8 +195795,8 @@ name: infundibular organ comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][DOI:10.1007/BF00303086] synonym: "infundibular organ of Boeke" EXACT [] synonym: "ventral infundibular organ" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000073 ! regional part of nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000065 ! ependymal cell relationship: part_of UBERON:0001017 ! central nervous system relationship: present_in_taxon NCBITaxon:7737 {source="https://doi.org/10.1111/j.1463-6395.1976", stage="larval"} ! Branchiostoma @@ -196660,17 +195809,14 @@ def: "This is a neurosecretory organ rostral to the ampulla caudalis on the vent comment: Shares characteristics with neurohypophysis xref: BTO:0001848 is_a: UBERON:0002368 {source="BTO"} ! endocrine gland -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010133 ! neuroendocrine gland -relationship: never_in_taxon NCBITaxon:32523 {source="ISBN:0471888893"} ! Tetrapoda relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord [Term] id: UBERON:0011360 name: ampulla caudalis def: "A ventricle-like space at the end of the central canal." [ISBN:0471888893] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal of spinal cord @@ -196829,7 +195975,6 @@ id: UBERON:0011374 name: prepuce def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis or clitoris. Glands may also be present." [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C12323 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0035004 ! preputial swelling @@ -197180,7 +196325,6 @@ id: UBERON:0011510 name: cloacal bursa def: "An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration." [http://www.ncbi.nlm.nih.gov/pubmed/11479904, UBERON:cjm] comment: Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: capable_of_part_of GO:0007585 {gci_relation="part_of", gci_filler="NCBITaxon:8459", notes="cloacal bursa"} ! respiratory gaseous exchange by respiratory system relationship: capable_of_part_of GO:0031413 {gci_relation="part_of", gci_filler="NCBITaxon:8464", source="http://www.ncbi.nlm.nih.gov/pubmed/11479904"} ! regulation of buoyancy @@ -197347,7 +196491,6 @@ synonym: "esophagus lumen" EXACT [FMA:9398] xref: EMAPA:18380 xref: FMA:9398 xref: http://www.snomedbrowser.com/Codes/Details/322648002 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001043 ! esophagus @@ -197362,7 +196505,6 @@ def: "A tube lumen that is part of a mesonephric duct." [OBOL:automatic] synonym: "cavity of nephric duct" RELATED [] synonym: "nephric duct lumen" EXACT [EHDAA2:0001244] xref: EHDAA2:0001244 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 ! tube lumen intersection_of: UBERON:0005082 ! tube lumen intersection_of: luminal_space_of UBERON:0003074 ! mesonephric duct @@ -197380,7 +196522,6 @@ synonym: "ulnar styloid process" EXACT [FMA:23628] xref: FMA:23628 xref: http://en.wikipedia.org/wiki/Ulnar_styloid_process xref: http://www.snomedbrowser.com/Codes/Details/181952009 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 {source="FMA"} ! anatomical projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004408 {source="FMA"} ! distal epiphysis of ulna @@ -197418,7 +196559,6 @@ xref: NCIT:C82953 xref: Supraorbital:ridge xref: UMLS:C2826587 {source="ncithesaurus:Orbital_Ridge"} is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:2000691 ! supraorbital bone relationship: has_quality PATO:0001598 {gci_relation="part_of", gci_filler="NCBITaxon:63221"} ! protruding relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -197432,9 +196572,8 @@ id: UBERON:0011577 name: flexural organ def: "A portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin." [https://sourceforge.net/tracker/?group_id=76834&atid=994726, ZFA:0007071] xref: ZFA:0007071 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_potential_to_develop_into UBERON:0010134 {notes="unvetted"} ! secretory circumventricular organ relationship: part_of UBERON:0002328 {source="ZFA"} ! notochord relationship: present_in_taxon NCBITaxon:7711 ! Chordata @@ -197456,7 +196595,6 @@ id: UBERON:0011580 name: platypus crural gland def: "A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind limb." [http://en.wikipedia.org/wiki/Platypus_venom#Spur_and_crural_gland] xref: Spur_and_crural_gland -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011579 ! venom gland relationship: only_in_taxon NCBITaxon:9257 ! Ornithorhynchus relationship: part_of UBERON:0011581 ! platypus calcaneus spur @@ -197505,7 +196643,6 @@ synonym: "stylopodium" RELATED [] synonym: "stylopodium skeleton" EXACT [] xref: VSAO:0005007 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0002472 ! stylopod @@ -197527,7 +196664,6 @@ synonym: "zeugopod skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "zygopodium" RELATED [VSAO:0005010] xref: VSAO:0005010 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0002471 ! zeugopod @@ -197615,9 +196751,9 @@ id: UBERON:0011592 name: future upper lip synonym: "upper jaw future lip" EXACT [EHDAA2:0002120] xref: EHDAA2:0002120 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0004068 {notes="fusion"} ! medial nasal prominence relationship: develops_from UBERON:0005868 {notes="fusion"} ! maxillary prominence relationship: part_of UBERON:0001709 {source="EHDAA2"} ! upper jaw region @@ -197718,7 +196854,7 @@ xref: FMA:52775 xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif xref: http://www.snomedbrowser.com/Codes/Details/368928003 is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme relationship: part_of UBERON:0001688 {source="FMA"} ! incus bone @@ -197761,7 +196897,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227123 xref: http://www.snomedbrowser.com/Codes/Details/304704007 xref: NCIT:C54204 is_a: UBERON:0001828 ! gingiva -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001828 ! gingiva intersection_of: part_of UBERON:0001710 ! lower jaw region relationship: part_of UBERON:0001710 ! lower jaw region @@ -197786,7 +196921,6 @@ synonym: "avian keel" RELATED [] synonym: "carina" BROAD [] synonym: "keel" BROAD [] xref: Keel:(bird) -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: capable_of_part_of GO:0060361 ! flight relationship: only_in_taxon NCBITaxon:8782 {source="Wikipedia"} ! Aves @@ -197817,6 +196951,7 @@ xref: TAO:0000672 xref: VHOG:0000688 xref: ZFA:0000672 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011608 ! hyomandibular element intersection_of: UBERON:0011608 ! hyomandibular element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -197850,7 +196985,6 @@ synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton @@ -197858,7 +196992,6 @@ relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton id: UBERON:0011609 name: ceratohyal element synonym: "keratohyal element" RELATED [] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton @@ -197894,6 +197027,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/370641002 xref: TAO:0000578 xref: ZFA:0000578 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011609 ! ceratohyal element disjoint_from: UBERON:2000627 {source="lexical"} ! posterior ceratohyal relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage @@ -197909,7 +197043,6 @@ is_a: UBERON:0011613 ! hypohyal element id: UBERON:0011613 name: hypohyal element def: "The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal." [http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton @@ -197918,7 +197051,6 @@ id: UBERON:0011614 name: basihyal element def: "Skeletal element that is median and is the anterior-most element of the ventral hyoid arch." [TAO:0001891] xref: TAO:0001891 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton @@ -197945,6 +197077,7 @@ xref: TAO:0000316 xref: VSAO_RETIRED:0000007 xref: ZFA:0000316 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011614 ! basihyal element intersection_of: UBERON:0011614 ! basihyal element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -197957,7 +197090,6 @@ name: stylohyoid bone def: "This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse." [MURDOCH:1758] xref: http://www.snomedbrowser.com/Codes/Details/370715004 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -197968,7 +197100,6 @@ synonym: "lingual process of basihyoid" EXACT [] synonym: "lingual process of basihyoid bone" EXACT [] synonym: "lingual process of hyoid" RELATED [] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011618 ! basihyal bone [Term] @@ -197986,7 +197117,6 @@ name: thyrohyoid bone def: "Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx." [MURDOCH:1951] xref: http://www.snomedbrowser.com/Codes/Details/370708007 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0011618 ! basihyal bone relationship: connects UBERON:0011623 ! horn of thyroid cartilage relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -197998,9 +197128,7 @@ synonym: "cornu of thyroid cartilage" EXACT [FMA:55300] synonym: "thyroid cartilage horn" EXACT [FMA:55300] xref: FMA:55300 xref: http://www.snomedbrowser.com/Codes/Details/279518009 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004765 ! skeletal element -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001738 ! thyroid cartilage [Term] @@ -198046,9 +197174,7 @@ synonym: "pars orbitalis (os frontale)" EXACT [FMA:52849] synonym: "pars orbitalis ossis frontalis" EXACT LATIN [http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone] xref: FMA:52849 xref: http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0002517 {source="FMA-abduced-lr"} ! basicranium relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -198190,7 +197316,6 @@ synonym: "plica anterior faucium" EXACT LATIN [FMA:TA] xref: FMA:55024 xref: http://www.snomedbrowser.com/Codes/Details/276958001 xref: Palatoglossal:arch -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: adjacent_to UBERON:0000165 ! mouth relationship: adjacent_to UBERON:0001042 ! chordate pharynx @@ -198358,7 +197483,6 @@ def: "Paired processes that arise near the midpoint of the neural arch lamina, f synonym: "diapophysis" BROAD [AAO:0000706] synonym: "transverse process" BROAD [AAO:0000706] xref: AAO:0000706 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 {source="AAO"} ! anatomical projection is_a: UBERON:4100000 ! skeletal element projection relationship: connected_to UBERON:0011652 ! dorsal head of rib @@ -198374,7 +197498,6 @@ xref: http://en.wikipedia.org/wiki/Interclavicle xref: VSAO:0000161 is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 {source="VSAO"} ! dermal bone -relationship: never_in_taxon NCBITaxon:32525 ! Theria relationship: part_of UBERON:0007831 {source="VSAO"} ! pectoral girdle skeleton relationship: part_of UBERON:0007841 {gci_relation="part_of", gci_filler="NCBITaxon:8782"} ! furcula relationship: present_in_taxon NCBITaxon:9257 ! Ornithorhynchus @@ -198529,8 +197652,6 @@ name: perichordal ring def: "Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature." [ISBN:0073040584] xref: AAO:0000738 is_a: UBERON:0002384 ! connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007862 {source="AAO"} ! perichordal tissue [Term] @@ -198773,8 +197894,6 @@ synonym: "valve leaflet" RELATED [MA:0003179] xref: EMAPA:35903 xref: MA:0003179 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000946 ! cardial valve [Term] @@ -198814,7 +197933,6 @@ xref: EMAPA:35377 xref: Labioscrotal:swelling xref: VHOG:0000976 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0005876 ! undifferentiated genital tubercle @@ -198829,6 +197947,7 @@ xref: EHDAA2:0000501 xref: EHDAA:9363 xref: EMAPA:18329 xref: EMAPA:30423 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011754 ! genital swelling intersection_of: UBERON:0011754 ! genital swelling intersection_of: part_of UBERON:0000474 ! female reproductive system @@ -198844,6 +197963,7 @@ synonym: "scrotal bulge" EXACT [] synonym: "scrotal primordium" EXACT [] xref: EHDAA2:0001049 xref: EMAPA:30509 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011754 ! genital swelling intersection_of: UBERON:0011754 ! genital swelling intersection_of: part_of UBERON:0003135 ! male reproductive organ @@ -198961,7 +198081,6 @@ id: UBERON:0011772 name: lower jaw opening def: "An anatomical space that is part of a bone of lower jaw." [OBOL:automatic] xref: AAO:0000273 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0004768 ! bone of lower jaw @@ -198973,7 +198092,6 @@ id: UBERON:0011773 name: upper jaw opening def: "An anatomical space that is part of a bone of upper jaw." [OBOL:automatic] xref: AAO:0000621 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0011597 ! bone of upper jaw @@ -198995,8 +198113,6 @@ xref: FMA:61243 xref: http://www.snomedbrowser.com/Codes/Details/279811007 xref: NCIT:C33845 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000025 ! tube intersection_of: connects UBERON:0001853 ! utricle of membranous labyrinth intersection_of: connects UBERON:0001854 ! saccule of membranous labyrinth @@ -199111,7 +198227,6 @@ synonym: "shaft of feather" EXACT [] synonym: "stem of feather" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/66810005 is_a: UBERON:0000025 ! tube -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] @@ -199119,7 +198234,6 @@ id: UBERON:0011785 name: ramus of feather barb synonym: "barb ramus" RELATED [] synonym: "main shaft of feather barb" EXACT [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0008294 ! feather barb @@ -199128,7 +198242,6 @@ id: UBERON:0011786 name: ramus of feather barbule synonym: "barb ramus" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "main shaft of feather barbule" EXACT [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0008295 ! feather barbule @@ -199228,7 +198341,6 @@ relationship: connected_to UBERON:0000976 ! humerus id: UBERON:0011799 name: cavity of feather shaft def: "An anatomical cavity that is part of a feather shaft." [OBOL:automatic] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0011784 ! feather shaft @@ -199239,9 +198351,8 @@ relationship: part_of UBERON:0011784 ! feather shaft id: UBERON:0011800 name: dermal pulp of feather shaft def: "A tissue that is part of a cavity of feather shaft." [OBOL:automatic] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0011784 ! feather shaft relationship: develops_from UBERON:0011803 ! feather bud, dermal component @@ -199252,7 +198363,6 @@ relationship: part_of UBERON:0011784 ! feather shaft id: UBERON:0011801 name: dermal condensation of feather follicle def: "A suprabasal cell population which together with the feather follicle placode develops into the feather follicle." [http://people.eku.edu/ritchisong/feather_evolution.htm] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011585 ! cell condensation intersection_of: UBERON:0011585 ! cell condensation intersection_of: adjacent_to UBERON:0011783 ! feather follicle placode @@ -199278,9 +198388,8 @@ synonym: "dermal core of feather papilla" EXACT [] synonym: "dermal papilla" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "dermal papilla of feather bud" EXACT [] synonym: "dermal papilla of feather papilla" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0011802 ! feather bud relationship: develops_from UBERON:0011801 ! dermal condensation of feather follicle @@ -199294,7 +198403,6 @@ synonym: "feather bud epithelium" EXACT [] synonym: "feather germ" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0005153 ! epithelial bud intersection_of: part_of UBERON:0011802 ! feather bud relationship: develops_from UBERON:0011783 ! feather follicle placode @@ -199303,7 +198411,6 @@ relationship: part_of UBERON:0011802 ! feather bud [Term] id: UBERON:0011805 name: cavity of feather follicle -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0011782 ! feather follicle @@ -199315,7 +198422,6 @@ id: UBERON:0011806 name: dermis of feather follicle def: "A tissue that is part of a dermis and is part of a feather follicle." [OBOL:automatic] is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0002067 ! dermis @@ -199329,7 +198435,6 @@ id: UBERON:0011807 name: epidermis of feather follicle def: "A tissue that is part of a epidermis and is part of a feather follicle." [OBOL:automatic] is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001003 ! skin epidermis @@ -199417,7 +198522,6 @@ synonym: "AVC lumen" EXACT [] synonym: "cavity of atrioventricular canal" EXACT [] synonym: "lumen of AVC" EXACT [] xref: EHDAA2:0000152 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0002087 ! atrioventricular canal @@ -199435,7 +198539,6 @@ synonym: "AV region" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] synonym: "AV segment" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] xref: EHDAA2:0004149 xref: FMA:85125 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0002081 ! cardiac atrium @@ -199545,7 +198648,6 @@ synonym: "Montgomery tubercle" EXACT [] synonym: "Montgomery's tubercle" EXACT [] synonym: "tubercle of Montgomery" EXACT [] xref: FMA:58091 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0002030 ! nipple @@ -199555,7 +198657,6 @@ name: duct of lesser vestibular gland def: "A duct that is part of a minor vestibular gland." [OBOL:automatic] synonym: "lesser vestibular gland duct" EXACT [FMA:20094] xref: FMA:20094 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010146 ! paraurethral duct is_a: UBERON:0011831 ! duct of vestibular gland intersection_of: UBERON:0000058 ! duct @@ -199591,7 +198692,6 @@ synonym: "sebaceous gland duct" EXACT [FMA:70947] xref: FMA:70947 xref: NCIT:C33520 is_a: UBERON:0000058 ! duct -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001821 ! sebaceous gland relationship: part_of UBERON:0001821 ! sebaceous gland @@ -199602,7 +198702,6 @@ name: acinus of sebaceous gland def: "An acinus that is part of a sebaceous gland." [OBOL:automatic] synonym: "sebaceous gland acinus" EXACT [FMA:59657] xref: FMA:59657 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001821 ! sebaceous gland @@ -199617,7 +198716,6 @@ synonym: "parotid gland acinus" EXACT [FMA:59863] xref: EMAPA:37933 {source="MA:th"} xref: FMA:59863 xref: http://www.snomedbrowser.com/Codes/Details/46926004 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011850 ! acinus of salivary gland is_a: UBERON:0013232 ! serous acinus intersection_of: UBERON:0009842 ! glandular acinus @@ -199630,7 +198728,6 @@ name: acinus of salivary gland def: "An acinus that is part of a salivary gland." [OBOL:automatic] synonym: "salivary gland acinus" EXACT [FMA:59870] xref: FMA:59870 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001044 ! saliva-secreting gland @@ -199654,7 +198751,6 @@ name: acinus of lactiferous gland def: "An acinus that is part of a mammary gland." [OBOL:automatic] synonym: "lactiferous gland acinus" EXACT [FMA:74438] xref: FMA:74438 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001911 ! mammary gland @@ -199667,8 +198763,6 @@ name: acinus of lacrimal gland def: "An acinus that is part of a lacrimal gland." [OBOL:automatic] synonym: "lacrimal gland acinus" EXACT [FMA:85250] xref: FMA:85250 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001817 ! lacrimal gland @@ -199702,8 +198796,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/264484004 xref: NCIT:C95443 xref: UMLS:C0149591 {source="ncithesaurus:Internal_Auditory_Canal_of_Ear"} is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: conduit_for UBERON:0001647 ! facial nerve relationship: conduit_for UBERON:0001648 ! vestibulocochlear nerve relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear @@ -199726,7 +198818,6 @@ id: UBERON:0011861 name: aorta collagen fibril def: "The connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011640] subset: pheno_slim -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: part_of UBERON:0004664 ! aorta tunica adventitia @@ -199738,7 +198829,6 @@ id: UBERON:0011862 name: pulmonary collagen fibril def: "The connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011641] subset: pheno_slim -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: part_of UBERON:0002048 ! lung @@ -199771,7 +198861,6 @@ id: UBERON:0011865 name: corneal stroma collagen fibril def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011650] subset: pheno_slim -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: part_of UBERON:0001777 ! substantia propria of cornea @@ -199900,7 +198989,6 @@ synonym: "corpus linguae" EXACT LATIN [http://www.drugs.com/dict/body-of-tongue. synonym: "tongue body" EXACT [FMA:54641] xref: FMA:54641 xref: http://www.snomedbrowser.com/Codes/Details/362090005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 {source="FMA"} ! tongue @@ -199913,7 +199001,6 @@ synonym: "tongue margin" EXACT [FMA:54650] xref: FMA:54650 xref: http://www.snomedbrowser.com/Codes/Details/368572007 xref: http://www.snomedbrowser.com/Codes/Details/368594004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line intersection_of: connects UBERON:0007371 ! superior surface of tongue @@ -199984,7 +199071,6 @@ name: endoneurial fluid def: "Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord." [MGI:llw2, MP:0003633] subset: pheno_slim xref: EMAPA:37850 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland intersection_of: UBERON:0000463 ! organism substance intersection_of: located_in UBERON:0000123 ! endoneurium @@ -199997,7 +199083,6 @@ name: lumen of vagina def: "An organ cavity that is part of a vagina." [OBOL:automatic] synonym: "vaginal lumen" EXACT [FMA:19982] xref: FMA:19982 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: part_of UBERON:0000996 ! vagina @@ -200014,7 +199099,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0504097 xref: http://www.snomedbrowser.com/Codes/Details/91739007 xref: NCIT:C32517 xref: UMLS:C0504097 {source="ncithesaurus:Endomysium"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006804 ! reticular tissue intersection_of: UBERON:0006804 ! reticular tissue intersection_of: surrounds CL:0000187 ! muscle cell @@ -200068,7 +199152,6 @@ xref: http://en.wikipedia.org/wiki/Epimysium xref: http://linkedlifedata.com/resource/umls/id/C0504096 xref: NCIT:C32527 xref: UMLS:C0504096 {source="ncithesaurus:Epimysium"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: bounding_layer_of UBERON:0014892 ! skeletal muscle organ relationship: continuous_with UBERON:0000043 ! tendon @@ -200085,7 +199168,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0224087 xref: http://www.snomedbrowser.com/Codes/Details/63406008 xref: NCIT:C33299 xref: UMLS:C0224087 {source="ncithesaurus:Perimysium"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue @@ -200095,8 +199177,6 @@ name: hair matrix comment: The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. xref: FMA:70945 is_a: UBERON:0000021 ! cutaneous appendage -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001037 {source="FMA"} ! strand of hair [Term] @@ -200116,7 +199196,6 @@ def: "A rock held inside a gastrointestinal tract." [http://en.wikipedia.org/wik synonym: "gizzard stone" RELATED [http://en.wikipedia.org/wiki/Gastrolith] synonym: "stomach stone" RELATED [http://en.wikipedia.org/wiki/Gastrolith] xref: http://en.wikipedia.org/wiki/Gastrolith -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001555 ! digestive tract @@ -200163,7 +199242,6 @@ synonym: "medial head of gastrocnemius muscle" EXACT [] xref: EMAPA:36250 xref: FMA:45956 xref: http://www.snomedbrowser.com/Codes/Details/213689008 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 ! muscle head disjoint_from: UBERON:0011908 {source="lexical"} ! gastrocnemius lateralis relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius @@ -200179,7 +199257,6 @@ synonym: "lateral head of gastrocnemius muscle" EXACT [] xref: EMAPA:36249 xref: FMA:45959 xref: http://www.snomedbrowser.com/Codes/Details/213588009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 ! muscle head relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius @@ -200234,7 +199311,6 @@ synonym: "Schwalbe's line" EXACT [FMA:58422] synonym: "Schwalbe's ring" EXACT [MP:0006250] xref: EMAPA:37895 {source="MA:th"} xref: FMA:58422 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: contributes_to_morphology_of UBERON:0005969 ! eye trabecular meshwork relationship: part_of UBERON:0000964 ! cornea @@ -200276,9 +199352,7 @@ subset: pheno_slim synonym: "basement membrane of cochlear labyrinth" EXACT [] synonym: "cochlea basement membrane" EXACT [] xref: EMAPA:37830 {source="MA:th"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0002499 ! cochlear labyrinth relationship: part_of UBERON:0002499 ! cochlear labyrinth @@ -200426,7 +199500,7 @@ relationship: part_of UBERON:0006003 {source="ISBN:0123813611"} ! integumentary [Term] id: UBERON:0011933 name: vibrissa unit -def: "A pilosebaceuous unit that contains a strand of virbissa hair (a specialized tactile hair) with the follicle incorporating a blood sinus, heavily innervated by sensory nerves." [http://orcid.org/0000-0002-6601-2165] +def: "A pilosebaceous unit that contains a strand of vibrissa hair (a specialized tactile hair) with the follicle incorporating a blood sinus, heavily innervated by sensory nerves." [http://orcid.org/0000-0002-6601-2165] subset: pheno_slim synonym: "vibrissa" RELATED [MA:0000163] xref: EMAPA:17529 @@ -200500,8 +199574,6 @@ def: "An arrector muscle of hair that is part of a vibrissa hair." [OBOL:automat synonym: "arrector pilorum muscle of vibrissa" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:26771 is_a: UBERON:0002033 ! arrector muscle of hair -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0002033 ! arrector muscle of hair intersection_of: part_of UBERON:0006378 ! strand of vibrissa hair relationship: part_of UBERON:0006378 ! strand of vibrissa hair @@ -200554,7 +199626,6 @@ def: "A luminal layer of epithelium that is part of a ureter." [OBOL:automatic] subset: pheno_slim xref: EMAPA:37779 {source="MA:th"} xref: MA:0002656 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0000056 ! ureter @@ -200566,7 +199637,6 @@ id: UBERON:0011948 name: ureter subluminal urothelium xref: EMAPA:37780 {source="MA:th"} xref: MA:0002657 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011946 ! subluminal layer of epithelium relationship: part_of UBERON:0001254 ! urothelium of ureter @@ -200576,7 +199646,6 @@ name: endometrium luminal epithelium def: "A luminal layer of epithelium that is part of a endometrium epithelium." [OBOL:automatic] xref: EMAPA:35309 xref: MA:0002733 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0004811 ! endometrium epithelium @@ -200589,7 +199658,6 @@ def: "The inner cell layer of the mammary epithelium bilayer that lines the lumi synonym: "lumina layer of epithelium of lactiferous gland" EXACT [FMA:74458] xref: EMAPA:37902 {source="MA:th"} xref: FMA:74458 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0001911 ! mammary gland @@ -200602,7 +199670,6 @@ name: prostate luminal epithelium def: "A luminal layer of epithelium that is part of a prostate gland." [OBOL:automatic] synonym: "subdivision of luminal layer of epithelium of prostatic gland" EXACT [FMA:74262] xref: FMA:74262 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0002367 ! prostate gland @@ -201135,7 +200202,6 @@ synonym: "schizocoelom" NARROW [] xref: EHDAA2:0004731 xref: http://en.wikipedia.org/wiki/Coelom is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure -relationship: never_in_taxon NCBITaxon:147099 {source="http://en.wikipedia.org/wiki/Acoelomorpha"} ! Acoelomorpha relationship: only_in_taxon NCBITaxon:33213 ! Bilateria [Term] @@ -201144,7 +200210,6 @@ name: myocoele def: "The cavity within a myotome." [http://medical-dictionary.thefreedictionary.com/myocoele] xref: EMAPA:31134 xref: VHOG:0001283 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0003082 ! myotome @@ -201193,6 +200258,7 @@ synonym: "right lung caudal lobe bronchiole" EXACT [EHDAA2:0004094] xref: EHDAA2:0004094 xref: EMAPA:19004 xref: http://www.snomedbrowser.com/Codes/Details/15215000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003538 ! right lung bronchiole intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002171 ! lower lobe of right lung @@ -201332,7 +200398,6 @@ synonym: "palatum osseum" EXACT [FMA:TA] xref: EMAPA:37444 {source="MA:th"} xref: FMA:59857 is_a: UBERON:0000075 ! subdivision of skeletal system -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: subdivision_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 {source="FMA"} ! hard palate @@ -201377,9 +200442,7 @@ synonym: "fovea for ligament of head of femur" EXACT [FMA:43700] synonym: "fovea of head of femur" RELATED [http://en.wikipedia.org/wiki/Fovea_of_head_of_femur] xref: FMA:43700 xref: http://en.wikipedia.org/wiki/Fovea_of_head_of_femur -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone -relationship: never_in_taxon NCBITaxon:9709 ! Phocidae relationship: part_of UBERON:0004412 ! proximal epiphysis of femur [Term] @@ -201397,7 +200460,6 @@ name: patella cartilage element def: "A cartilaginous condensation that has the potential to develop into a patella." [OBOL:automatic] xref: EMAPA:19140 is_a: UBERON:0003860 ! hindlimb mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella @@ -201412,7 +200474,6 @@ name: patella pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a patella." [OBOL:automatic] xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella @@ -201428,7 +200489,6 @@ synonym: "bronchial lumen" EXACT [FMA:62646] synonym: "lumen of bronchus" EXACT [FMA:62646] xref: FMA:62646 xref: http://www.snomedbrowser.com/Codes/Details/199401001 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 {source="FMA"} ! anatomical space intersection_of: luminal_space_of UBERON:0002185 {source="FMA"} ! bronchus @@ -201550,7 +200610,6 @@ xref: Cooper%27s:ligaments xref: FMA:58040 xref: http://www.snomedbrowser.com/Codes/Details/279011006 is_a: UBERON:0000158 {source="FMA"} ! membranous layer -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0005200 ! thoracic mammary gland @@ -201574,7 +200633,6 @@ id: UBERON:0012105 name: baleen plate def: "A keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales." [http://en.wikipedia.org/wiki/baleen] xref: http://en.wikipedia.org/wiki/baleen -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013765 ! digestive system element relationship: composed_primarily_of UBERON:0012106 ! baleen plate bristle relationship: part_of UBERON:0000165 ! mouth @@ -201587,7 +200645,6 @@ def: "A keratinous bristle that enables filter feeding in the mouth of mysticete synonym: "baleen plate fringe" EXACT [] synonym: "fringe of baleen plate" EXACT [] xref: http://en.wikipedia.org/wiki/baleen -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: has_part GO:0045095 ! keratin filament relationship: only_in_taxon NCBITaxon:9761 ! Mysticeti @@ -201615,9 +200672,7 @@ synonym: "processus zygomaticus ossis frontalis" EXACT LATIN [http://en.wikipedi xref: FMA:54389 xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_frontal_bone xref: http://www.snomedbrowser.com/Codes/Details/427577001 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0012110 ! frontal process of zygomatic bone relationship: connected_to UBERON:0001683 ! jugal bone relationship: part_of RO:0002577 ! system @@ -201632,7 +200687,6 @@ synonym: "zygomatic bone - frontal process" EXACT [] xref: FMA:52907 xref: http://www.snomedbrowser.com/Codes/Details/116353002 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: connected_to UBERON:0000209 ! tetrapod frontal bone relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001683 ! jugal bone @@ -201648,7 +200702,6 @@ xref: Diastema:(dentistry) xref: FMA:77271 xref: http://www.snomedbrowser.com/Codes/Details/410003009 xref: MESH:A14.254.333 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0001091 ! calcareous tooth relationship: adjacent_to UBERON:0001091 {minCardinality="2", maxCardinality="2"} ! calcareous tooth @@ -201773,7 +200826,6 @@ def: "A respiratory pump found in basal craniates." [http://en.wikipedia.org/wik synonym: "velum" BROAD [] is_a: UBERON:0000171 ! respiration organ disjoint_from: UBERON:0035960 ! velum feeding organ -relationship: never_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: only_in_taxon NCBITaxon:89593 ! Craniata relationship: present_in_taxon NCBITaxon:7762 ! Myxinidae @@ -201819,7 +200871,6 @@ synonym: "barbicel" BROAD SENSU [] synonym: "feather hooklet" EXACT [] synonym: "hooklet" BROAD SENSU [] xref: BTO:0003269 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: branching_part_of UBERON:0008295 ! feather barbule relationship: part_of UBERON:0000022 ! feather @@ -201840,7 +200891,6 @@ synonym: "tip of snout" RELATED [] xref: EMAPA:37915 {source="MA:th"} xref: FMA:59518 xref: http://www.snomedbrowser.com/Codes/Details/361926005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point property_value: dc-contributor https://github.com/cmungall relationship: part_of UBERON:0007827 {source="FMA"} ! external nose @@ -201855,7 +200905,6 @@ synonym: "eminentia capitata" RELATED [AAO:0000838] synonym: "radial condyle" RELATED [AAO:0000838] synonym: "radial condyle of humerus" EXACT [] xref: AAO:0000838 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus @@ -201866,7 +200915,6 @@ def: "A deep evacuation in the bone, into which the anconeal process of the ulna synonym: "fossa olecrani" EXACT LATIN [http://en.wikipedia.org/wiki/Olecranon_fossa] xref: FMA:23450 xref: Olecranon:fossa -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus @@ -201925,7 +200973,6 @@ synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] synonym: "prepollex" BROAD [AAO:0000852] xref: AAO:0000852 is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0005880 ! prepollex @@ -202024,7 +201071,6 @@ def: "A subdivision of the autopod skeleton consisting of both acropodial skeleo synonym: "digitopodium" RELATED [PHENOSCAPE:ni] synonym: "skeleton of digits" RELATED COMPARATIVE_PREFERRED [] is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0012140 ! digitopodium region @@ -202110,7 +201156,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1840 xref: NLXANAT:20090306 xref: PBA:10093 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] @@ -202132,7 +201177,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1163 xref: NLXANAT:20090307 xref: PBA:10094 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] @@ -202322,7 +201366,6 @@ xref: NCIT:C33680 xref: UMLS:C1515066 {source="ncithesaurus:Superior_Intercostal_Vein"} is_a: UBERON:0012197 ! intercostal vein relationship: connected_to UBERON:0001594 {subset="human_reference_atlas"} ! azygos vein -relationship: part_of RO:0002577 ! system [Term] id: UBERON:0012195 @@ -202330,6 +201373,10 @@ name: left superior intercostal vein xref: FMA:4797 xref: http://www.snomedbrowser.com/Codes/Details/27297006 is_a: UBERON:0012194 ! superior intercostal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0012194 ! superior intercostal vein +intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism +relationship: in_left_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0012196 @@ -202337,7 +201384,11 @@ name: right superior intercostal vein xref: FMA:4877 xref: http://www.snomedbrowser.com/Codes/Details/80721005 is_a: UBERON:0012194 ! superior intercostal vein +is_a: UBERON:0015212 ! lateral structure +intersection_of: UBERON:0012194 ! superior intercostal vein +intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism relationship: connected_to UBERON:0001594 {subset="human_reference_atlas"} ! azygos vein +relationship: in_right_side_of UBERON:0000468 ! multicellular organism [Term] id: UBERON:0012197 @@ -202349,8 +201400,9 @@ xref: Intercostal:veins xref: MA:0003166 is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein -intersection_of: located_in UBERON:0012198 ! intercostal space -relationship: located_in UBERON:0012198 ! intercostal space +intersection_of: drains UBERON:0012198 ! intercostal space +relationship: drains UBERON:0012198 ! intercostal space +relationship: part_of RO:0002577 ! system [Term] id: UBERON:0012198 @@ -202359,7 +201411,6 @@ def: "A space in the rib cage between two successive ribs." [http://orcid.org/00 xref: FMA:12243 xref: http://www.snomedbrowser.com/Codes/Details/243937005 xref: Intercostal:space -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0002228 ! rib relationship: part_of UBERON:0003252 ! thoracic rib cage @@ -202375,7 +201426,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/89209000 is_a: UBERON:0012197 ! intercostal vein disjoint_from: UBERON:0012200 {source="lexical"} ! anterior intercostal vein relationship: connected_to UBERON:0001594 {subset="human_reference_atlas"} ! azygos vein -relationship: part_of RO:0002577 ! system [Term] id: UBERON:0012200 @@ -202386,7 +201436,6 @@ xref: http://en.wikipedia.org/wiki/Anterior_intercostal_veins xref: http://www.snomedbrowser.com/Codes/Details/15546000 is_a: UBERON:0012197 ! intercostal vein relationship: connected_to UBERON:0001589 {subset="human_reference_atlas"} ! internal thoracic vein -relationship: part_of RO:0002577 ! system [Term] id: UBERON:0012236 @@ -202442,7 +201491,6 @@ synonym: "blood vessel of bladder" RELATED [EMAPA:28679] synonym: "blood vessels of bladder" EXACT [EMAPA:28679] synonym: "set of urinary bladder blood vessels" EXACT [] xref: EMAPA:28679 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 {source="EMAPA"} ! vasculature @@ -202468,7 +201516,6 @@ xref: EMAPA:37977 {source="MA:th"} xref: FMA:19650 xref: http://www.snomedbrowser.com/Codes/Details/181424008 xref: Urinary:meatus -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening intersection_of: UBERON:0000161 ! orifice intersection_of: connects UBERON:0010390 ! lumen of urethra @@ -202519,7 +201566,6 @@ synonym: "vesicourethral orifice" EXACT [FMA:85263] xref: FMA:85263 xref: http://en.wikipedia.org/wiki/Internal_urethral_orifice xref: http://www.snomedbrowser.com/Codes/Details/362228001 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening intersection_of: UBERON:0000161 ! orifice intersection_of: connects UBERON:0009958 ! bladder lumen @@ -202538,7 +201584,6 @@ synonym: "nuptial excrescence" EXACT [http://en.wikipedia.org/wiki/Nuptial_pad] synonym: "thumb pad" RELATED [http://en.wikipedia.org/wiki/Nuptial_pad] xref: AAO:0010177 xref: Nuptial:pad -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000981 ! limb external integument structure relationship: capable_of_part_of GO:0007620 ! copulation relationship: only_in_taxon NCBITaxon:8292 ! Amphibia @@ -202549,7 +201594,6 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0012244 name: stratum intermedium of epidermis def: "A temporary layer between old and new skin that is invalided by white blood cells[Kardong]." [ISBN:0073040584] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis @@ -202572,7 +201616,6 @@ synonym: "thyroid follicle lumen" EXACT [FMA:68829] synonym: "thyroid follicular space" EXACT [FMA:68829] xref: FMA:68829 xref: Follicular:lumen -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0005305 ! thyroid follicle @@ -202627,7 +201670,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227829 xref: http://www.snomedbrowser.com/Codes/Details/264459002 xref: NCIT:C12310 xref: UMLS:C0227829 {source="ncithesaurus:Ectocervix"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000064 ! organ part @@ -202741,6 +201783,7 @@ synonym: "digit I(CII) of manus" RELATED [] synonym: "wing digit 1 (adult)" RELATED [] synonym: "wing digit 2 (embryonic)" RELATED [] synonym: "wing digit I" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002389 ! manual digit intersection_of: UBERON:0002389 ! manual digit intersection_of: part_of UBERON:5012260 ! alular digit plus metapodial segment @@ -202761,6 +201804,7 @@ synonym: "manual major digit" RELATED [] synonym: "wing digit 2 (adult)" RELATED [] synonym: "wing digit 3 (embryonic)" RELATED [] synonym: "wing digit II" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002389 ! manual digit intersection_of: UBERON:0002389 ! manual digit intersection_of: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment @@ -202779,6 +201823,7 @@ synonym: "manual minor digit" RELATED [] synonym: "wing digit 3 (adult)" RELATED [] synonym: "wing digit 4 (embryonic)" RELATED [] synonym: "wing digit III" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002389 ! manual digit intersection_of: UBERON:0002389 ! manual digit intersection_of: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment @@ -202856,7 +201901,6 @@ synonym: "squamocolumnar junction with the glandular stomach" RELATED [] xref: EMAPA:37640 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/67204008 xref: MA:0003014 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction relationship: connects UBERON:0008827 ! murine forestomach relationship: connects UBERON:0011953 ! stomach glandular region @@ -202952,8 +201996,6 @@ xref: Nasal:glands xref: NCIT:C22725 xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"} is_a: UBERON:0002365 ! exocrine gland -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001826 ! nasal cavity mucosa @@ -202996,7 +202038,6 @@ is_a: UBERON:0016852 ! skin scent gland intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0011932 ! pilosebaceous unit intersection_of: part_of UBERON:0012336 ! perianal skin -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0011932 ! pilosebaceous unit relationship: part_of UBERON:0012336 ! perianal skin @@ -203131,7 +202172,6 @@ xref: EMAPA:37893 {source="MA:th"} xref: FMA:35502 xref: http://en.wikipedia.org/wiki/Malleolus xref: http://www.snomedbrowser.com/Codes/Details/361795009 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004410 ! distal epiphysis of fibula @@ -203172,7 +202212,6 @@ synonym: "navicular fossa of urethra" EXACT [] xref: FMA:19722 xref: http://en.wikipedia.org/wiki/Navicular_fossa_of_male_urethra xref: http://www.snomedbrowser.com/Codes/Details/362233002 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001337 ! spongiose part of urethra @@ -203192,7 +202231,6 @@ synonym: "valve of fossa navicularis of urethra" EXACT [] synonym: "valvula fossae navicularis" EXACT LATIN [MP:anna] xref: FMA:19781 xref: http://www.snomedbrowser.com/Codes/Details/367737008 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: contributes_to_morphology_of UBERON:0012294 ! navicular fossa of spongiose part of urethra @@ -203210,7 +202248,6 @@ synonym: "urethral crista" EXACT [] xref: FMA:19718 xref: http://www.snomedbrowser.com/Codes/Details/362231000 xref: Urethral:crest -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: contributes_to_morphology_of UBERON:0000057 ! urethra relationship: part_of UBERON:0012299 ! mucosa of urethra @@ -203262,7 +202299,6 @@ xref: EMAPA:37912 {source="MA:th"} xref: FMA:76904 xref: http://www.snomedbrowser.com/Codes/Details/362229009 is_a: UBERON:0000344 ! mucosa -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -203331,7 +202367,6 @@ xref: http://en.wikipedia.org/wiki/Orifice_of_ureter xref: http://www.snomedbrowser.com/Codes/Details/181415004 xref: NCIT:C12337 is_a: UBERON:0000161 {source="FMA"} ! orifice -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening relationship: contributes_to_morphology_of UBERON:0009973 ! ureterovesical junction relationship: part_of UBERON:0006082 ! fundus of urinary bladder @@ -203430,7 +202465,6 @@ xref: EMAPA:17637 xref: FMA:312685 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005868 {source="EHDAA2"} ! maxillary prominence [Term] @@ -203439,9 +202473,9 @@ name: 1st arch maxillary ectoderm synonym: "ectoderm of maxillary component" EXACT [EMAPA:16389] xref: EHDAA2:0000039 xref: EMAPA:16389 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015833 ! foregut epithelium relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm @@ -203513,7 +202547,6 @@ xref: EMAPA:37983 {source="MA:th"} xref: FMA:19984 xref: Vaginal:orifice is_a: UBERON:0000161 ! orifice -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0000996 ! vagina @@ -203624,7 +202657,6 @@ def: "The caudal, swollen portion of the gubernaculum." [http://orcid.org/0000-0 synonym: "bulb of gubernaculum" NARROW [] synonym: "pars infravaginalis gubernaculi" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/11997885] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008843 ! gubernaculum testis @@ -203638,7 +202670,6 @@ synonym: "preputial gland of penis" RELATED INCONSISTENT [FMA:19653] xref: FMA:19653 xref: http://en.wikipedia.org/wiki/Hirsuties_coronae_glandis is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001332 {source="FMA"} ! prepuce of penis relationship: present_in_taxon NCBITaxon:9606 {source="Preputial:gland"} ! Homo sapiens @@ -203651,9 +202682,7 @@ synonym: "penis spike" RELATED [] synonym: "penis spine" RELATED [] xref: Penile:spines is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000989 ! penis relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -203681,7 +202710,6 @@ xref: MA:0003030 xref: NCIT:C77659 xref: UMLS:C2698431 {source="ncithesaurus:Nasal-Associated_Lymphoid_Tissue"} is_a: UBERON:0001962 ! gut-associated lymphoid tissue -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -203711,7 +202739,6 @@ xref: MESH:D001956 xref: NCIT:C12318 xref: UMLS:C0006205 {source="ncithesaurus:Broad_Ligament"} is_a: UBERON:0000211 {source="MESH"} ! ligament -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: connects UBERON:0000459 ! uterine wall relationship: connects UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0002095 ! mesentery @@ -203733,7 +202760,6 @@ name: navicular bursa def: "A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle." [http://medical-dictionary.thefreedictionary.com/navicular+bursa] synonym: "bursa podotrochlearis" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/370660009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003668 ! synovial bursa relationship: only_in_taxon NCBITaxon:9788 ! Equidae relationship: part_of UBERON:0002470 ! autopod region @@ -203778,7 +202804,6 @@ xref: MA:0003045 xref: MESH:D002420 xref: NCIT:C12689 xref: UMLS:C0007458 {source="ncithesaurus:Cauda_Equina"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0009623 {source="MESH"} ! spinal nerve root @@ -203842,7 +202867,6 @@ id: UBERON:0012351 name: urachal lumen def: "An anatomical space that is enclosed by a urachus." [OBOL:automatic] synonym: "urachus lumen" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0002068 ! urachus @@ -203856,7 +202880,6 @@ def: "Extracellular matrix secreted by intraglomerular mesangial cells." [MP:001 subset: pheno_slim synonym: "extracellular mesangial matrix" EXACT [MP:0011338] xref: EMAPA:37907 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: composed_primarily_of GO:0031012 ! extracellular matrix relationship: part_of UBERON:0002319 ! mesangium @@ -204028,7 +203051,6 @@ def: "Portion of substance contained within the thyroid follicle lumen. Contains synonym: "thyroid colloid" EXACT [FMA:68831] synonym: "thyroid follicle colloid" EXACT [FMA:68831] xref: FMA:68831 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 {source="FMA"} ! organism substance relationship: has_part PR:000016283 ! thyroglobulin relationship: located_in UBERON:0012246 ! thyroid follicular lumen @@ -204132,7 +203154,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226920 xref: http://www.snomedbrowser.com/Codes/Details/245830008 xref: NCIT:C54223 xref: UMLS:C0226920 {source="ncithesaurus:Retromolar_Trigone"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001828 ! gingiva @@ -204166,7 +203187,6 @@ xref: FMA:15930 xref: http://linkedlifedata.com/resource/umls/id/C1288327 xref: NCIT:C32206 xref: UMLS:C1288327 {source="ncithesaurus:Bladder_Muscular_Coat"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0001255 ! urinary bladder @@ -204182,7 +203202,6 @@ synonym: "circular muscle layer of segment of large intestine" RELATED [FMA:8116 xref: EMAPA:37558 {source="MA:th"} xref: FMA:81160 xref: MA:0001548 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle @@ -204196,7 +203215,6 @@ synonym: "longitudinal muscle layer of zone of large intestine" RELATED [FMA:636 xref: EMAPA:37559 {source="MA:th"} xref: FMA:63637 xref: MA:0001549 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle @@ -204218,7 +203236,6 @@ xref: EMAPA:37562 {source="MA:th"} xref: FMA:14935 xref: http://www.snomedbrowser.com/Codes/Details/54658003 xref: MA:0001560 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0004239 ! small intestine smooth muscle @@ -204241,7 +203258,6 @@ xref: EMAPA:37563 {source="MA:th"} xref: FMA:14936 xref: http://www.snomedbrowser.com/Codes/Details/59150006 xref: MA:0001561 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: part_of UBERON:0004239 ! small intestine smooth muscle @@ -204293,7 +203309,6 @@ def: "Most proximal cloacal compartment, into which the large intestine empties[ synonym: "cloacal coprodeum" EXACT [] synonym: "coprodaeum" EXACT [] synonym: "coprodeal portion of cloaca" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000162 ! cloaca relationship: proximalmost_part_of UBERON:0000162 ! cloaca @@ -204306,7 +203321,6 @@ synonym: "cloacal urodeum" EXACT [] synonym: "urodaeum" EXACT [] synonym: "urodeal portion of cloaca" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/81191004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000162 ! cloaca @@ -204355,7 +203369,6 @@ def: "A microvillus layer that is striated and found in the intestine." [http:// synonym: "striated border" RELATED [FMA:70978] xref: FMA:70978 xref: NCIT:C33634 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012423 ! layer of microvilli relationship: part_of UBERON:0000160 ! intestine @@ -204374,7 +203387,6 @@ def: "A brush border layer that is part of a intestine." [OBOL:automatic] comment: Consider merging into UBERON:0012425 synonym: "brush border microvillus layer of intestine" EXACT [] synonym: "intestinal brush border" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012424 ! brush border layer intersection_of: UBERON:0012424 ! brush border layer intersection_of: part_of UBERON:0000160 ! intestine @@ -204386,7 +203398,6 @@ name: proximal convoluted tubule brush border def: "A brush border layer that is part of a proximal tubule in the kidney." [http://en.wikipedia.org/wiki/Microvillus#Function, http://orcid.org/0000-0002-6601-2165] synonym: "kidney brush border layer" BROAD [] synonym: "proximal tubule brush border layer" BROAD [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012424 ! brush border layer intersection_of: UBERON:0012424 ! brush border layer intersection_of: part_of UBERON:0001287 ! proximal convoluted tubule @@ -204407,7 +203418,6 @@ xref: FMA:14073 xref: http://linkedlifedata.com/resource/umls/id/C0229619 xref: NCIT:C13051 xref: UMLS:C0229619 {source="ncithesaurus:Hematopoietic_Tissue"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034769 {source="FMA"} ! lymphomyeloid tissue intersection_of: UBERON:0000479 ! tissue intersection_of: site_of GO:0030097 ! hemopoiesis @@ -204426,7 +203436,6 @@ synonym: "tunica fibrosa" BROAD [] xref: FMA:58102 xref: http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball xref: http://www.snomedbrowser.com/Codes/Details/361318005 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0000964 ! cornea @@ -204451,7 +203460,6 @@ id: UBERON:0012438 name: blastema of regenerating fin/limb def: "A blastema that is part of a regenerating fin/limb." [OBOL:automatic] xref: ZFA:0001270 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005306 ! blastema intersection_of: UBERON:0005306 ! blastema intersection_of: part_of UBERON:2001269 ! regenerating fin/limb @@ -204462,7 +203470,6 @@ id: UBERON:0012439 name: blastema of regenerating digit tip def: "A blastema that is part of a distal segment of digit." [OBOL:automatic] synonym: "digit blastema" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005306 ! blastema intersection_of: UBERON:0005306 ! blastema intersection_of: part_of UBERON:0009551 ! distal segment of digit @@ -204497,7 +203504,6 @@ xref: EHDAA2:0000447 xref: FMA:14711 xref: http://www.snomedbrowser.com/Codes/Details/264473006 xref: Omental:foramen -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001179 ! peritoneal cavity @@ -204505,7 +203511,6 @@ relationship: part_of UBERON:0001179 ! peritoneal cavity id: UBERON:0012443 name: row of scales synonym: "set of scales" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034926 ! anatomical row intersection_of: UBERON:0034926 ! anatomical row intersection_of: has_member UBERON:0002542 ! scale @@ -204529,7 +203534,6 @@ is_obsolete: true id: UBERON:0012447 name: podotheca def: "A horny sheath covering the lower leg of some birds." [http://orcid.org/0000-0002-6601-2165] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000981 ! limb external integument structure relationship: has_part UBERON:0007381 ! epidermal scale relationship: part_of UBERON:0001003 ! skin epidermis @@ -204607,7 +203611,6 @@ name: nerve ending def: "Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS." [MESH:A08.800.550] synonym: "nerve ending" RELATED [MESH:A08.800.550] xref: MESH:D009411 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001027 ! sensory nerve @@ -204681,7 +203684,6 @@ def: "Most distal cloacal compartment; function is copulation and in some specie synonym: "proctodeal wall of cloaca" RELATED [] synonym: "proctodeum" RELATED INCONSISTENT [] xref: http://www.snomedbrowser.com/Codes/Details/298233001 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: distalmost_part_of UBERON:0000162 ! cloaca relationship: part_of UBERON:0000162 ! cloaca @@ -204694,7 +203696,6 @@ synonym: "cloaca lumen" EXACT [ZFA:0000330] synonym: "cloacal chamber" EXACT [ZFA:0000330] xref: TAO:0000330 xref: ZFA:0000330 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000162 ! cloaca @@ -204709,7 +203710,6 @@ def: "The opening of the cloacal chamber to the outside of the organism. Birds m synonym: "cloacal opening" EXACT [] synonym: "cloacal orifice" RELATED [] synonym: "vent" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0000162 ! cloaca @@ -204719,7 +203719,6 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012465 name: lumen of terminal part of digestive tract def: "An anatomical space that is enclosed by a terminal part of digestive tract." [OBOL:automatic] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0006866 ! terminal part of digestive tract @@ -204733,7 +203732,6 @@ synonym: "extraembryonic cavities" RELATED PLURAL [EHDAA2:0000472] xref: EHDAA2:0000472 xref: EMAPA:16054 xref: VHOG:0000767 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0016887 ! entire extraembryonic component @@ -204809,7 +203807,6 @@ synonym: "ligamentum hepatoduodenale" EXACT [http://en.wikipedia.org/wiki/Hepato xref: FMA:16521 xref: Hepatoduodenal:ligament xref: http://www.snomedbrowser.com/Codes/Details/362706000 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element @@ -204834,7 +203831,6 @@ synonym: "oral tentacle" EXACT [] xref: BTO:0001357 is_a: UBERON:0000062 ! organ relationship: adjacent_to UBERON:0000165 ! mouth -relationship: never_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: present_in_taxon NCBITaxon:7568 relationship: present_in_taxon NCBITaxon:7737 ! Branchiostoma @@ -204948,7 +203944,6 @@ synonym: "mucosa of cloaca" EXACT [] synonym: "mucosa of organ of cloaca" EXACT [] synonym: "mucous membrane of cloaca" EXACT [] synonym: "organ mucosa of cloaca" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000162 ! cloaca @@ -204998,7 +203993,6 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012485 name: cloacal villus synonym: "cloacal villi" EXACT PLURAL [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012423 ! layer of microvilli intersection_of: UBERON:0012423 ! layer of microvilli intersection_of: part_of UBERON:0000162 ! cloaca @@ -205020,12 +204014,10 @@ id: UBERON:0012487 name: vaginal sphincter def: "A sphincter muscle that is part of a vagina." [OBOL:automatic] synonym: "sphincter of vagina" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0000996 ! vagina -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0000996 ! vagina relationship: present_in_taxon NCBITaxon:8509 ! Squamata @@ -205075,7 +204067,6 @@ synonym: "muscularis externa of anal canal" EXACT [] synonym: "muscularis propria of anal canal" EXACT [FMA:15708] xref: FMA:15708 xref: http://www.snomedbrowser.com/Codes/Details/362171000 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0000159 ! anal canal @@ -205175,7 +204166,6 @@ synonym: "tunica adventitia (esophagus)" EXACT [FMA:63006] synonym: "tunica adventitia oesophageae" EXACT [FMA:TA] xref: FMA:63006 xref: http://www.snomedbrowser.com/Codes/Details/85950006 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0001043 ! esophagus @@ -205189,7 +204179,6 @@ synonym: "epitrochlearis" EXACT [BTO:0000423] synonym: "wing epitrochlearis muscle" NARROW SENSU [NCBITaxon:8782, OBOL:automatic] xref: BTO:0000423 is_a: UBERON:0003662 {source="BTO"} ! forelimb muscle -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0012615 @@ -205278,7 +204267,6 @@ xref: FMA:18305 xref: http://en.wikipedia.org/wiki/Ampulla_of_uterine_tube xref: http://www.snomedbrowser.com/Codes/Details/245497001 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube @@ -205303,7 +204291,6 @@ name: gastroduodenal junction def: "An anatomical junction that connects a stomach and connects a duodenum." [OBOL:automatic] xref: FMA:17046 xref: http://www.snomedbrowser.com/Codes/Details/264014000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0000945 ! stomach @@ -205342,8 +204329,8 @@ relationship: part_of UBERON:0000059 ! large intestine id: UBERON:0012925 name: bronchial bud xref: BTO:0001641 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud -is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0005597 ! lung primordium [Term] @@ -205365,7 +204352,6 @@ synonym: "crista palatina" RELATED [FMA:59201] synonym: "torus palatinus" EXACT LATIN [http://palaeos.com/vertebrates/glossary/glossaryP.html] xref: FMA:59201 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -205381,7 +204367,6 @@ xref: http://palaeos.com/vertebrates/glossary/images/popliteal.gif xref: http://www.snomedbrowser.com/Codes/Details/362791002 xref: NCIT:C103222 xref: Popliteal:fossa -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur @@ -205399,7 +204384,6 @@ comment: The rattle is composed of a series of hollow, interlocked segments made synonym: "snake rattle" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/10734004 xref: Rattle -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: only_in_taxon NCBITaxon:8570 ! Serpentes relationship: part_of UBERON:0007812 ! post-anal tail @@ -205532,7 +204516,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1208 xref: http://www.snomedbrowser.com/Codes/Details/279337001 xref: NCIT:C32292 xref: Sulcus:(neuroanatomy) -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus intersection_of: UBERON:0000093 ! sulcus intersection_of: part_of UBERON:0000955 ! brain @@ -205660,7 +204643,6 @@ synonym: "urethral bulb" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] xref: FMA:19614 xref: http://en.wikipedia.org/wiki/Bulb_of_penis is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis @@ -205689,7 +204671,6 @@ id: UBERON:0013131 name: lobe of tail synonym: "fluke" NARROW [] synonym: "tail fluke" NARROW [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0007812 ! post-anal tail @@ -205730,7 +204711,6 @@ name: interdental plate def: "The interdental plate refers to the bone-filled mesial-distal region between the teeth." [http://en.wikipedia.org/wiki/Interdental_plate] xref: Interdental:plate is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: located_in UBERON:0012111 ! diastema relationship: located_in UBERON:0012111 ! diastema @@ -205746,7 +204726,6 @@ synonym: "lip vein" EXACT [OBOL:automatic] synonym: "vena labialis" EXACT LATIN [] xref: http://www.snomedbrowser.com/Codes/Details/367664002 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0001833 ! lip @@ -205782,7 +204761,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279967000 xref: NCIT:C32377 xref: UMLS:C1261099 {source="ncithesaurus:Coronary_Ligament"} is_a: CARO:0000003 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0013139 ! ligament of liver relationship: attaches_to UBERON:0001103 ! diaphragm relationship: part_of RO:0002577 ! system @@ -205800,7 +204778,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230238 xref: http://www.snomedbrowser.com/Codes/Details/48536008 xref: NCIT:C32997 xref: UMLS:C0230238 {source="ncithesaurus:Liver_Ligament"} -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element @@ -205899,7 +204876,6 @@ xref: EHDAA2:0000185 xref: EMAPA:18631 xref: MA:0003184 xref: VHOG:0001328 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007798 {source="cjm"} ! vascular system relationship: part_of UBERON:0000955 {source="EHDAA2"} ! brain relationship: part_of UBERON:0004582 {source="VHOG-modified"} ! venous system @@ -205920,6 +204896,7 @@ comment: develops into cerebral aqueduct synonym: "midbrain vesicle" EXACT [EHDAA2:0001103] xref: EHDAA2:0001103 xref: http://www.snomedbrowser.com/Codes/Details/361481005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013150 ! future brain vesicle relationship: develops_from UBERON:0013147 {source="EHDAA2"} ! early mesencephalic vesicle relationship: part_of UBERON:0001891 {source="EHDAA2"} ! midbrain @@ -205946,7 +204923,6 @@ synonym: "secondary brain vesicle" NARROW [] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2499 xref: http://www.snomedbrowser.com/Codes/Details/360409004 xref: NCIT:C34259 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010064 {source="EHDAA2"} ! open anatomical space relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005281 {source="EHDAA2"} ! ventricular system of central nervous system @@ -205978,7 +204954,6 @@ synonym: "primary interventricular foramen" RELATED [EHDAA2:0004064] xref: EHDAA2:0004064 xref: http://en.wikipedia.org/wiki/Primary_interventricular_foramen is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: located_in UBERON:0002094 {source="EHDAA2"} ! interventricular septum relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000948 ! heart @@ -206004,7 +204979,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228130 xref: NCIT:C32137 xref: UMLS:C0228130 {source="ncithesaurus:Arachnoid_Villus"} is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater [Term] @@ -206027,9 +205001,9 @@ name: 1st arch mandibular ectoderm synonym: "ectoderm of mandibular component" EXACT [EMAPA:16383] xref: EHDAA2:0000032 xref: EMAPA:16383 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015833 ! foregut epithelium relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm relationship: part_of UBERON:0000076 {source="EHDAA2"} ! external ectoderm @@ -206164,8 +205138,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=646 xref: http://en.wikipedia.org/wiki/Vallecula_of_cerebellum xref: NCIT:C12237 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -206285,7 +205257,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/368942006 xref: NCIT:C32117 xref: UMLS:C1510916 {source="ncithesaurus:Anterior_Wall_of_the_Tympanum"} is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010066 ! tympanic plate [Term] @@ -206413,7 +205384,6 @@ xref: FMA:18613 xref: http://linkedlifedata.com/resource/umls/id/C0227878 xref: NCIT:C33243 xref: UMLS:C0227878 {source="ncithesaurus:Ovarian_Cortex"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001851 ! cortex @@ -206435,7 +205405,6 @@ xref: http://en.wikipedia.org/wiki/Medulla_of_ovary xref: http://linkedlifedata.com/resource/umls/id/C0227879 xref: NCIT:C33245 xref: UMLS:C0227879 {source="ncithesaurus:Ovarian_Medulla"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000958 ! medulla of organ @@ -206476,7 +205445,6 @@ synonym: "wool" RELATED [MESH:A13.970] xref: http://www.snomedbrowser.com/Codes/Details/90080004 xref: MESH:D014935 is_a: UBERON:0010509 ! strand of pelage hair -relationship: never_in_taxon NCBITaxon:9606 {source="https://github.com/obophenotype/uberon/issues/703"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:9963 {source="cjm"} ! Caprinae [Term] @@ -206487,7 +205455,6 @@ comment: analagous to a puparium in other insects is_a: UBERON:0018657 ! pupal case disjoint_from: UBERON:0016927 ! mucus cocoon relationship: composed_primarily_of UBERON:0012245 ! silk -relationship: never_in_taxon NCBITaxon:37572 ! Papilionoidea relationship: only_in_taxon NCBITaxon:33392 ! Endopterygota relationship: surrounds UBERON:0003143 ! pupa @@ -206548,7 +205515,6 @@ xref: Epipubic:bone is_a: UBERON:0007830 {source="cjm"} ! pelvic girdle bone/zone is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0001271 ! pelvic girdle region -relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires relationship: only_in_taxon NCBITaxon:40674 ! Mammalia [Term] @@ -206557,8 +205523,8 @@ name: nasal tentacle def: "A fleshy appendage ringing the snout of a Star-nosed mole." [http://en.wikipedia.org/wiki/Star-nosed_mole] synonym: "nasal ray" RELATED [] xref: Star-nosed:mole +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000021 ! cutaneous appendage -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part UBERON:0011255 ! Eimer's organ relationship: only_in_taxon NCBITaxon:9373 ! Talpidae relationship: part_of UBERON:0001003 ! skin epidermis @@ -206568,16 +205534,9 @@ id: UBERON:0013207 name: entepicondylar foramen def: "A canal through the medial epicondyle at the distal end of the vertebrate humerus, usually traversed by the median nerve and brachial artery." [http://www.jstor.org/discover/10.2307/2422468] xref: Entepicondylar:foramen -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0001148 ! median nerve relationship: conduit_for UBERON:0001398 ! brachial artery -relationship: never_in_taxon NCBITaxon:91561 ! Artiodactyla -relationship: never_in_taxon NCBITaxon:9365 ! Erinaceus europaeus -relationship: never_in_taxon NCBITaxon:9397 ! Chiroptera -relationship: never_in_taxon NCBITaxon:9604 ! Hominidae -relationship: never_in_taxon NCBITaxon:9721 ! Cetacea -relationship: never_in_taxon NCBITaxon:9975 ! Lagomorpha relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0004404 ! distal epiphysis of humerus relationship: present_in_taxon NCBITaxon:376911 @@ -206675,7 +205634,6 @@ id: UBERON:0013217 name: zygomatic plate def: "In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus." [http://en.wikipedia.org/wiki/Zygomatic_plate] xref: Zygomatic:plate -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: part_of UBERON:0002500 ! zygomatic arch @@ -206709,7 +205667,6 @@ id: UBERON:0013220 name: foramen of Panizza def: "A hole with that connects the left and right aorta in animals of the order Crocodilia." [http://en.wikipedia.org/wiki/Foramen_of_Panizza] xref: http://en.wikipedia.org/wiki/Foramen_of_Panizza -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: connects UBERON:0000947 {minCardinality="2", maxCardinality="2"} ! aorta relationship: connects UBERON:0000947 ! aorta @@ -206729,7 +205686,6 @@ is_a: CARO:0000003 is_a: UBERON:0003663 ! hindlimb muscle relationship: has_muscle_insertion UBERON:0003464 ! hindlimb bone relationship: has_muscle_origin UBERON:0035102 ! transverse process of caudal vertebra -relationship: never_in_taxon NCBITaxon:9606 {source="https://doi.org/10.1002/ar.22919"} ! Homo sapiens relationship: part_of UBERON:0002103 ! hindlimb relationship: present_in_taxon NCBITaxon:399537 {source="https://doi.org/10.1002/ar.22919"} relationship: present_in_taxon NCBITaxon:8492 {source="Wikipedia"} ! Archosauria @@ -206742,7 +205698,6 @@ name: otic notch def: "Otic notches are invagination in the posterior margin of the skull roof, one behind each orbit. Such notches are found in labyrinthodonts and some of their immediate ancestors, but not their reptilian descendants. The presence or absence of the otic notches is one of the traits used to separate the amniotes from the amphibian grade tetrapods." [http://en.wikipedia.org/wiki/Otic_notch] xref: Otic:notch is_a: UBERON:0005913 ! zone of bone organ -relationship: never_in_taxon NCBITaxon:32524 ! Amniota relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: part_of UBERON:0003113 ! dermatocranium @@ -206821,7 +205776,6 @@ name: eyelid gland def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165] synonym: "gland of eyelid" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/280574000 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015152 ! gland of ocular region intersection_of: UBERON:0002530 ! gland @@ -206843,7 +205797,6 @@ is_a: UBERON:0013229 ! eyelid gland is_a: UBERON:0015153 ! medial gland of ocular region intersection_of: UBERON:0015153 ! medial gland of ocular region intersection_of: produces UBERON:0022286 ! secretion of nictitans gland -relationship: never_in_taxon NCBITaxon:39107 {source="ISBN:1118473523"} ! Murinae relationship: part_of UBERON:0010207 ! nictitating membrane relationship: present_in_taxon NCBITaxon:10047 {source="ISBN:1118473523"} relationship: produces UBERON:0022286 ! secretion of nictitans gland @@ -206886,7 +205839,6 @@ name: violet gland def: "The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular." [http://en.wikipedia.org/wiki/Violet_gland] synonym: "supracaudal gland" RELATED [] xref: Violet:gland -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011252 ! scent gland relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0007812 ! post-anal tail @@ -206992,7 +205944,6 @@ def: "Solid evaginations of the UG sinus that develops into a vaginal plate that xref: http://linkedlifedata.com/resource/umls/id/C1519330 xref: NCIT:C34297 xref: UMLS:C1519330 {source="ncithesaurus:Sinovaginal_Bulb"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000164 ! primitive urogenital sinus @@ -207023,9 +205974,9 @@ synonym: "Waldeyer's organ" EXACT [FMA:74055] xref: FMA:74055 xref: http://en.wikipedia.org/wiki/Paradidymis xref: http://www.snomedbrowser.com/Codes/Details/279643005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure -is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule relationship: part_of UBERON:0000079 ! male reproductive system @@ -207038,10 +205989,10 @@ synonym: "parooephoron" RELATED [http://en.wikipedia.org/wiki/Paroophoron] synonym: "paroöphoron" RELATED [http://en.wikipedia.org/wiki/Paroophoron] xref: FMA:18692 xref: http://en.wikipedia.org/wiki/Paroophoron +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure -is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule relationship: part_of UBERON:0000474 ! female reproductive system @@ -207119,7 +206070,6 @@ xref: EMAPA:37892 {source="MA:th"} xref: FMA:33738 xref: http://en.wikipedia.org/wiki/Body_of_fibula xref: http://www.snomedbrowser.com/Codes/Details/302528006 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001446 ! fibula @@ -207140,7 +206090,6 @@ xref: FMA:33125 xref: http://en.wikipedia.org/wiki/Body_of_tibia xref: http://www.snomedbrowser.com/Codes/Details/302525009 xref: MA:0003049 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000979 ! tibia @@ -207153,7 +206102,6 @@ def: "A silver reflective layer in the outer choroid, adjacent to the sclera, fr synonym: "choroid stratum argenteum" EXACT [] synonym: "stratum argenteum" BROAD [http://www.ncbi.nlm.nih.gov/pubmed/14738502] is_a: UBERON:0000957 ! lamina -is_a: UBERON:0010313 ! neural crest-derived structure relationship: has_quality PATO:0001297 ! reflectivity relationship: has_quality PATO:0002124 ! laminar relationship: part_of UBERON:0001776 ! optic choroid @@ -207181,8 +206129,8 @@ synonym: "outer layer of choroid proper" EXACT [FMA:58435] synonym: "Sattler's layer" NARROW [FMA:58435] synonym: "vessel layer of choroid" EXACT [FMA:58435] xref: FMA:58435 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid @@ -207334,9 +206282,7 @@ id: UBERON:0013442 name: postorbital process def: "The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone." [http://en.wikipedia.org/wiki/Postorbital_process] xref: Postorbital:process -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] @@ -207372,8 +206318,6 @@ name: simian shelf def: "A bony buttress on the inner surface of the foremost part of the ape mandible, functioning to reinforce the mandible." [http://web.archive.org/web/20060830160800/www.anth.ucsb.edu/glossary/glossary.html] xref: Simian:shelf is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: only_in_taxon NCBITaxon:314295 ! Hominoidea relationship: part_of UBERON:0001684 ! mandible @@ -207463,7 +206407,6 @@ name: zygomatic fossa def: "The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary." [http://en.wikipedia.org/wiki/Zygomatic_fossa] xref: NCIT:C33898 xref: Zygomatic:fossa -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0002500 ! zygomatic arch @@ -207484,7 +206427,6 @@ name: retromolar space def: "The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP]." [http://en.wikipedia.org/wiki/Retromolar_space] synonym: "retromolar gap" EXACT [http://en.wikipedia.org/wiki/Retromolar_space] xref: Retromolar:space -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001684 ! mandible relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis @@ -207551,7 +206493,6 @@ relationship: part_of UBERON:0010033 ! posterior part of tongue id: UBERON:0013476 name: dermal layer of tongue synonym: "tongue (dermal layer)" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001723 ! tongue @@ -207585,7 +206526,6 @@ def: "A blood vessel endothelium that is part of a lung [Automatically generated synonym: "respiratory endothelium" RELATED [BTO:0004128] xref: BTO:0004128 xref: CALOHA:TS-0573 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0004638 ! blood vessel endothelium @@ -207676,7 +206616,6 @@ synonym: "plantar print" RELATED [MESH:E05.256] xref: http://linkedlifedata.com/resource/umls/id/C1516920 xref: NCIT:C32524 xref: UMLS:C1516920 {source="ncithesaurus:Epidermal_Ridges"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0002544 ! digit @@ -207705,7 +206644,6 @@ synonym: "superficial layer of deep cervical fascia" EXACT [FMA:57805] xref: FMA:57805 xref: http://en.wikipedia.org/wiki/Superficial_cervical_fascia xref: http://www.snomedbrowser.com/Codes/Details/175208005 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013491 ! cervical fascia relationship: has_part UBERON:0001013 ! adipose tissue relationship: immediately_deep_to UBERON:0002067 ! dermis @@ -207829,7 +206767,6 @@ id: UBERON:0013499 name: glossopharyngeal-vagus IX-X preganglion complex synonym: "glossopharyngeal-vagus preganglion complex" RELATED [EMAPA:16662] xref: EMAPA:16662 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001714 {source="cjm"} ! cranial ganglion @@ -207990,7 +206927,6 @@ is_a: CARO:0000003 is_a: UBERON:0003663 ! hindlimb muscle relationship: has_muscle_insertion UBERON:0000979 ! tibia relationship: has_muscle_origin UBERON:0001273 ! ilium -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0002103 ! hindlimb @@ -208121,7 +207057,6 @@ synonym: "cavity of stomach" EXACT [FMA:14585] synonym: "gastric cavity" RELATED [FMA:14585] xref: EMAPA:18395 xref: FMA:14585 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000945 ! stomach @@ -208149,7 +207084,6 @@ relationship: part_of UBERON:0003051 {source="EHDAA2"} ! ear vesicle id: UBERON:0013527 name: pectoral flipper tubercle def: "A bump or swelling adorining the head and leading edge of a pectoral flipper, associated with the multiple joints and terminal phalanges as found in the multiple phalanges of the humpback whale." [http://orcid.org/0000-0002-6601-2165] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0002102 ! forelimb @@ -208197,7 +207131,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/384717008 xref: NCIT:C94868 xref: WikipediaCategory:Brodmann_areas is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="FMA", source="Wikipedia"} ! cerebral cortex [Term] @@ -208217,7 +207150,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2436 xref: MBA:254 xref: Retrosplenial:region is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex [Term] @@ -208371,8 +207303,8 @@ xref: BIRNLEX:1741 xref: Brodmann_area:10 xref: DHBA:146034836 xref: FMA:68607 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 {source="BIRNLEX:1741"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=76 {source="BIRNLEX:1741"} xref: http://linkedlifedata.com/resource/umls/id/C1272532 xref: UMLS:C1272532 {source="BIRNLEX:1741"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area @@ -208891,7 +207823,6 @@ name: koniocortex def: "Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 1-3 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex." [http://www.medilexicon.com/medicaldictionary.php?t=47303] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2471 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -209276,7 +208207,6 @@ def: "The intertrochanteric crest is a bony ridge located on the posterior side comment: Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head xref: FMA:75100 xref: Intertrochanteric:crest -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line relationship: connects UBERON:0002503 ! greater trochanter relationship: connects UBERON:0002504 ! lesser trochanter @@ -209288,7 +208218,6 @@ name: intertrochanteric line def: "The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur that stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur." [http://en.wikipedia.org/wiki/Intertrochanteric_line] xref: FMA:74587 xref: Intertrochanteric:line -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0004412 ! proximal epiphysis of femur @@ -209399,7 +208328,7 @@ relationship: part_of UBERON:0002114 ! duodenum id: UBERON:0013645 name: gular gland def: "A gland that is part of the gular region (throat)." [http://orcid.org/0000-0002-6601-2165] -is_a: UBERON:0003297 ! gland of integumental system +is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0011154 ! gular region relationship: part_of UBERON:0011154 ! gular region @@ -209451,7 +208380,6 @@ xref: Masseteric:artery xref: NCIT:C53052 xref: UMLS:C0226149 {source="ncithesaurus:Masseteric_Artery"} is_a: UBERON:0001637 ! artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001597 ! masseter muscle relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery @@ -209480,11 +208408,9 @@ name: velar skeleton def: "Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches." [http://orcid.org/0000-0002-6601-2165, ISBN:9780226315683] synonym: "skeleton of velum" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: CARO:0000003 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0012121 ! respiratory velum -relationship: never_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: only_in_taxon NCBITaxon:89593 ! Craniata relationship: part_of UBERON:0008895 {notes="in hagfishes it is difficult to separate neurocranium from visceral skeleton"} ! splanchnocranium relationship: part_of UBERON:0012121 ! respiratory velum @@ -209499,8 +208425,6 @@ synonym: "membrana elastica externa" EXACT [] synonym: "notochordal sheath" RELATED [XAO:0001020] xref: XAO:0001020 is_a: UBERON:0000479 {source="XAO"} ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: bounding_layer_of UBERON:0002328 ! notochord relationship: part_of UBERON:0002328 ! notochord @@ -209511,7 +208435,6 @@ def: "A diverticulum on the lingual aspect of the soft palate of male dromedarie synonym: "dulaa" EXACT [] synonym: "dulah" EXACT [] xref: Dulla:(organ) -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: located_in UBERON:0000167 ! oral cavity relationship: only_in_taxon NCBITaxon:9836 ! Camelus @@ -209685,7 +208608,6 @@ synonym: "peripheral retina" EXACT [XAO:0004458] xref: http://www.snomedbrowser.com/Codes/Details/264141008 xref: XAO:0004458 is_a: UBERON:0000073 ! regional part of nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] @@ -209836,7 +208758,6 @@ xref: BTO:0001852 xref: BTO:0003248 xref: CALOHA:TS-0092 is_a: UBERON:0001986 ! endothelium -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000955 ! brain @@ -209877,7 +208798,7 @@ def: "Epithelium lining the exocrine pancreas." [CALOHA:TS-2108] synonym: "epithelium of exocrine pancreas" RELATED [CALOHA:TS-2108] synonym: "exocrine pancreas epithelial cell" RELATED [CALOHA:TS-2108] xref: CALOHA:TS-2108 -is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000017 ! exocrine pancreas relationship: part_of UBERON:0000017 ! exocrine pancreas @@ -209969,7 +208890,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518428 xref: NCIT:C34230 xref: UMLS:C1518428 {source="ncithesaurus:Notochordal_Canal"} is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0006268 ! notochordal process relationship: part_of UBERON:0006268 ! notochordal process @@ -210006,7 +208926,6 @@ def: "A bone spine that is part of a ilium." [OBOL:automatic] xref: FMA:82509 xref: http://www.snomedbrowser.com/Codes/Details/272712007 xref: Iliac:spine -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013706 ! bone spine intersection_of: UBERON:0013706 ! bone spine intersection_of: part_of UBERON:0001273 ! ilium @@ -210097,7 +209016,6 @@ def: "One of the branches of the ilio-marsupialis that attaches to a pouch nippl synonym: "retractor mammae" RELATED [] is_a: CARO:0000003 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: has_muscle_insertion UBERON:0002030 ! nipple relationship: has_muscle_insertion UBERON:0009118 ! marsupium relationship: part_of UBERON:0013715 ! ilio-marsupialis muscle @@ -210140,7 +209058,6 @@ synonym: "dartos layer of scrotum" EXACT [] synonym: "dartos tunic" RELATED [http://en.wikipedia.org/wiki/Dartos] xref: FMA:27647 xref: http://www.snomedbrowser.com/Codes/Details/279582001 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013718 ! dartos muscle intersection_of: UBERON:0013718 ! dartos muscle @@ -210155,8 +209072,6 @@ name: dartos muscle of labia majora def: "A dartos muscle that is part of a female reproductive system." [OBOL:automatic] synonym: "dartos layer of labia" EXACT [] synonym: "dartos muliebris" RELATED [http://en.wikipedia.org/wiki/Dartos] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013718 ! dartos muscle intersection_of: UBERON:0013718 ! dartos muscle @@ -210210,7 +209125,6 @@ def: "Fluid contained within the notochordal canal." [http://animaldiversity.org comment: Distinct feature of coelocanths synonym: "notochord fluid" EXACT [] synonym: "portion of notochordal fluid" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: located_in UBERON:0013704 ! notochordal canal @@ -210237,11 +209151,8 @@ xref: AAO:0011018 xref: VHOG:0001567 xref: XAO:0003145 is_a: UBERON:0000020 ! sense organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of GO:0050910 ! detection of mechanical stimulus involved in sensory perception of sound relationship: has_part CL:0000202 ! auditory hair cell -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001855 {source="MA-abduced"} ! cochlear duct of membranous labyrinth [Term] @@ -210411,7 +209322,6 @@ synonym: "basibranchial" EXACT [ZFA:0000170] synonym: "basibranchials" EXACT PLURAL [ZFA:0000170] synonym: "copula 1" RELATED [] synonym: "copula I" RELATED [AAO:0000686] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 {source="ZFA"} ! post-hyoid pharyngeal arch skeleton @@ -210433,7 +209343,6 @@ subset: pheno_slim synonym: "metaphysis of ulna" EXACT [FMA:33767] xref: FMA:33767 is_a: UBERON:0001438 ! metaphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0001424 ! ulna relationship: part_of UBERON:0001010 {source="FMA"} ! diaphysis of ulna @@ -210448,7 +209357,6 @@ synonym: "diaphyseal end of humerus" EXACT [FMA:32830] synonym: "humeral metaphysis" EXACT [FMA:32830] xref: FMA:32830 is_a: UBERON:0001438 ! metaphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000976 ! humerus relationship: part_of UBERON:0000976 ! humerus @@ -210463,7 +209371,6 @@ xref: EMAPA:37772 {source="MA:th"} xref: FMA:33135 xref: MA:0003106 is_a: UBERON:0001438 ! metaphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000979 ! tibia relationship: part_of UBERON:0000979 ! tibia @@ -210476,7 +209383,6 @@ subset: pheno_slim synonym: "radial metaphysis" EXACT [FMA:33789] xref: FMA:33789 is_a: UBERON:0001438 ! metaphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0001423 ! radius bone relationship: part_of UBERON:0001423 ! radius bone @@ -210491,7 +209397,6 @@ synonym: "metacarpal bone diaphysis" EXACT [FMA:33804] synonym: "shaft of metacarpal" EXACT [FMA:33804] synonym: "shaft of metacarpal bone" EXACT [FMA:33804] xref: FMA:33804 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0002374 ! metacarpal bone @@ -210574,7 +209479,6 @@ def: "One of two openings in the uterine cervix." [http://orcid.org/0000-0002-66 synonym: "cervical opening" RELATED [] synonym: "uterine cervix opening" RELATED [] xref: FMA:20422 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000161 ! orifice @@ -210634,7 +209538,6 @@ synonym: "lumen of cervix of uterus" EXACT [FMA:17746] xref: BTO:0002249 xref: FMA:17746 xref: http://en.wikipedia.org/wiki/Canal_of_the_cervix -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0000002 ! uterine cervix @@ -210658,9 +209561,7 @@ synonym: "crus membranaceum commune ductuum semicircularium" EXACT LATIN [] xref: FMA:71881 xref: TAO:0005411 xref: ZFA:0005411 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001856 ! semicircular duct [Term] @@ -210708,7 +209609,6 @@ xref: FMA:52894 xref: http://en.wikipedia.org/wiki/Frontal_process_of_maxilla xref: http://www.snomedbrowser.com/Codes/Details/368869008 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -210735,7 +209635,6 @@ synonym: "uterine space" EXACT [] xref: EMAPA:36273 xref: FMA:17745 xref: Uterine:cavity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: part_of UBERON:0000995 ! uterus @@ -210802,7 +209701,6 @@ synonym: "metatarsal bone diaphysis" EXACT [FMA:33826] synonym: "metatarsal diaphysis" EXACT [] synonym: "shaft of metatarsal bone" EXACT [FMA:33826] xref: FMA:33826 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001448 ! metatarsal bone @@ -210951,7 +209849,6 @@ name: dorsal cap of Kooy synonym: "dorsal cap of kooy" EXACT [NLXANAT:100307] xref: NLXANAT:100307 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] @@ -210964,7 +209861,6 @@ xref: BAMS:IOma xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=751 xref: NLXANAT:100309 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] @@ -211011,7 +209907,6 @@ synonym: "membrana fibroelastica laryngis" EXACT LATIN [http://www.medilexicon.c xref: FMA:55239 xref: http://www.snomedbrowser.com/Codes/Details/361942003 is_a: UBERON:0000094 {source="FMA"} ! membrane organ -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001737 ! larynx [Term] @@ -211149,7 +210044,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245503009 xref: NCIT:C32147 xref: UMLS:C1510944 {source="ncithesaurus:Aryteno-epiglottic_Fold"} is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -211207,6 +210101,7 @@ synonym: "gustatory papillae" RELATED PLURAL [] synonym: "taste papilla" EXACT [] synonym: "taste papillae" RELATED PLURAL [] xref: FMA:54822 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001726 ! papilla of tongue intersection_of: UBERON:0001726 ! papilla of tongue intersection_of: has_part UBERON:0001727 ! taste bud @@ -211316,7 +210211,6 @@ xref: FMA:52770 xref: http://www.snomedbrowser.com/Codes/Details/368921009 xref: MA:0002994 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone @@ -211417,7 +210311,6 @@ synonym: "nymph" RELATED [BTO:0000954] xref: BTO:0000954 xref: Nymph:(biology) is_a: UBERON:0000069 ! larval stage -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:33213 ! Bilateria [Term] @@ -211472,7 +210365,6 @@ name: sciatic notch def: "Either of two notches on the dorsal border of the hip bone on each side that when closed off by ligaments form the corresponding sciatic foramina." [http://www.merriam-webster.com/medical/sciatic+notch] xref: http://www.snomedbrowser.com/Codes/Details/360956007 xref: Sciatic:notch -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001274 ! ischium @@ -211498,7 +210390,6 @@ xref: FMA:16914 xref: http://www.snomedbrowser.com/Codes/Details/182034009 xref: MA:0003053 xref: NCIT:C103818 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -211536,7 +210427,6 @@ synonym: "ischiopubic rami" RELATED [http://en.wikipedia.org/wiki/Ischiopubic_ra synonym: "rami of the pubis and ischium" RELATED [http://en.wikipedia.org/wiki/Ischiopubic_ramus] xref: FMA:43533 xref: Ischiopubic:ramus -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: has_part UBERON:0014439 ! inferior pubic ramus relationship: has_part UBERON:0014443 ! inferior ischial ramus @@ -211550,7 +210440,6 @@ synonym: "ramus ossis ischii" EXACT [FMA:17007] synonym: "ramusi ossis ischii" EXACT [FMA:TA] xref: FMA:17007 xref: http://www.snomedbrowser.com/Codes/Details/182043000 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001274 ! ischium @@ -211580,7 +210469,6 @@ name: pubic ramus subset: pheno_slim synonym: "ramus of pubis" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/182026003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ union_of: UBERON:0014438 ! superior pubic ramus union_of: UBERON:0014439 ! inferior pubic ramus @@ -211598,7 +210486,6 @@ synonym: "fossa acetabuli" EXACT LATIN [http://en.wikipedia.org/wiki/Acetabular_ xref: Acetabular:fossa xref: FMA:17269 xref: http://www.snomedbrowser.com/Codes/Details/289666003 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: continuous_with UBERON:0014446 ! acetabular notch relationship: part_of UBERON:0001272 ! innominate bone @@ -211610,7 +210497,6 @@ def: "The acetabulum presents below a deep notch, the acetabular notch, which is xref: Acetabular:notch xref: FMA:16944 xref: http://www.snomedbrowser.com/Codes/Details/289767000 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0018411 ! ligament of hip joint relationship: part_of UBERON:0001272 ! innominate bone @@ -211797,8 +210683,6 @@ synonym: "temporal fenestrae" RELATED PLURAL [] is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0001678 ! temporal bone -relationship: never_in_taxon NCBITaxon:32525 {notes="in extant mammals the synapsis temporal fenestra is closed by the sphenoid", source="Wikipedia"} ! Theria -relationship: never_in_taxon NCBITaxon:8459 {source="Wikipedia"} ! Testudines relationship: only_in_taxon NCBITaxon:32524 {notes="not present in earliest amniotes", source="Wikipedia"} ! Amniota relationship: part_of UBERON:0001678 ! temporal bone @@ -211870,7 +210754,6 @@ relationship: part_of UBERON:0003129 ! skull id: UBERON:0014466 name: subarachnoid fissure xref: FMA:75136 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space @@ -211962,7 +210845,6 @@ id: UBERON:0014475 name: endostylar duct def: "A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct." [http://www.ncbi.nlm.nih.gov/pubmed/15592682, https://github.com/obophenotype/uberon/issues/285] synonym: "duct of endostyle" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0006870 ! endostyle @@ -211979,7 +210861,6 @@ synonym: "thoracic skeleton" EXACT [EHDAA2:0002013] xref: EHDAA2:0002013 xref: FMA:77169 xref: Thoracic:skeleton -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -211993,11 +210874,9 @@ synonym: "rib skeleton" RELATED [] synonym: "set of all ribs" RELATED [FMA:265719] xref: FMA:265719 xref: TAO:0002100 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system relationship: composed_primarily_of UBERON:0015019 ! rib endochondral element relationship: has_part UBERON:0003252 ! thoracic rib cage -relationship: never_in_taxon NCBITaxon:7778 {source="Wikipedia"} ! Elasmobranchii relationship: part_of UBERON:0011138 ! postcranial axial skeletal system [Term] @@ -212676,7 +211555,6 @@ xref: BAMS:PAC xref: NLX:144210 xref: Periamygdaloid:cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex @@ -212688,7 +211566,6 @@ subset: non_informative synonym: "regional part of spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:717] xref: BIRNLEX:717 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: subdivision_of UBERON:0002291 ! central canal of spinal cord relationship: part_of UBERON:0002291 ! central canal of spinal cord @@ -213092,8 +211969,6 @@ def: "A subdivision of a layer of the hippocampus (e.g. stratum moleculare) cove subset: non_informative synonym: "hippocampal field layer" EXACT [] is_a: UBERON:0000119 ! cell layer -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002305 ! layer of hippocampus [Term] @@ -213422,7 +212297,6 @@ xref: MBA:998 xref: NLX:144261 is_a: UBERON:0000481 {source="ABA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005403 {source="ABA"} ! ventral striatum [Term] @@ -213503,7 +212377,6 @@ xref: BIRNLEX:1427 xref: http://linkedlifedata.com/resource/umls/id/C0228629 xref: http://www.snomedbrowser.com/Codes/Details/367877009 xref: UMLS:C0228629 {source="BIRNLEX:1427"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn @@ -213689,7 +212562,6 @@ xref: BIRNLEX:1714 xref: http://linkedlifedata.com/resource/umls/id/C0228612 xref: http://www.snomedbrowser.com/Codes/Details/174452008 xref: UMLS:C0228612 {source="BIRNLEX:1714"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn @@ -213720,9 +212592,7 @@ xref: FMA:75640 xref: http://linkedlifedata.com/resource/umls/id/C0458781 xref: http://www.snomedbrowser.com/Codes/Details/279799003 xref: UMLS:C0458781 {source="BIRNLEX:2522"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006723 ! cochlear modiolus [Term] @@ -213733,9 +212603,7 @@ xref: BIRNLEX:2556 xref: http://linkedlifedata.com/resource/umls/id/C0458766 xref: http://www.snomedbrowser.com/Codes/Details/279778001 xref: UMLS:C0458766 {source="BIRNLEX:2556"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006106 ! cochlear canal [Term] @@ -213746,9 +212614,7 @@ xref: BIRNLEX:2558 xref: http://linkedlifedata.com/resource/umls/id/C0458761 xref: http://www.snomedbrowser.com/Codes/Details/279772000 xref: UMLS:C0458761 {source="BIRNLEX:2558"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006106 ! cochlear canal [Term] @@ -213759,9 +212625,7 @@ xref: BIRNLEX:2559 xref: http://linkedlifedata.com/resource/umls/id/C0458768 xref: http://www.snomedbrowser.com/Codes/Details/279780007 xref: UMLS:C0458768 {source="BIRNLEX:2559"} -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006106 ! cochlear canal [Term] @@ -213807,7 +212671,6 @@ xref: BIRNLEX:811 xref: http://linkedlifedata.com/resource/umls/id/C0228647 xref: http://www.snomedbrowser.com/Codes/Details/314425003 xref: UMLS:C0228647 {source="BIRNLEX:811"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn @@ -213953,7 +212816,6 @@ synonym: "archeocerebellum" RELATED [BIRNLEX:904] synonym: "archicerebellum" EXACT [] synonym: "archicerebellum" RELATED [BIRNLEX:904] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of NBO:0000361 ! gait relationship: part_of UBERON:0002037 ! cerebellum @@ -213964,7 +212826,6 @@ def: "A phylogenetic subdivision of the cerebellum, the intermediate part, which synonym: "paleocerebellum" EXACT [] xref: http://en.wikipedia.org/wiki/Cerebellum is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -214293,7 +213154,6 @@ xref: Angular:vein xref: FMA:50893 xref: http://www.snomedbrowser.com/Codes/Details/151804007 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0001653 ! facial vein @@ -214398,7 +213258,6 @@ xref: FMA:49689 xref: http://en.wikipedia.org/wiki/Deep_auricular_artery xref: http://www.snomedbrowser.com/Codes/Details/147157007 is_a: UBERON:0009655 ! auricular artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0009655 ! auricular artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery @@ -214417,7 +213276,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/244211008 xref: NCIT:C32083 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013151 ! choroidal artery disjoint_from: UBERON:0014697 {source="lexical"} ! posterior choroidal artery relationship: branching_part_of UBERON:0001532 {source="FMA"} ! internal carotid artery @@ -214460,7 +213318,6 @@ def: "A vascular system that overlaps a umbilical cord and is part of a entire e xref: EHDAA2:0000478 xref: EMAPA:16370 xref: VHOG:0001396 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007798 ! vascular system relationship: part_of UBERON:0016887 ! entire extraembryonic component @@ -214470,9 +213327,9 @@ name: frontonasal process epithelium def: "An epithelium that is part of a frontonasal prominence." [OBOL:automatic] xref: EHDAA2:0004108 xref: EMAPA:32918 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004066 ! frontonasal prominence relationship: develops_from UBERON:0000076 {source="EHDAA2"} ! external ectoderm @@ -214518,7 +213375,6 @@ is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006756 ! median lingual swelling relationship: develops_from UBERON:0013156 {source="EHDAA2"} ! 1st arch mandibular endoderm @@ -214580,8 +213436,9 @@ relationship: part_of UBERON:0014710 ! carapacial ridge id: UBERON:0014712 name: carapacial ridge ectoderm def: "An epithelium that is part of a carapacial ridge." [OBOL:automatic] +is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0014710 ! carapacial ridge relationship: develops_from UBERON:0000076 {source="cjm"} ! external ectoderm @@ -214706,7 +213563,6 @@ xref: http://en.wikipedia.org/wiki/Osteon xref: http://www.snomedbrowser.com/Codes/Details/361726004 xref: MESH:D006253 xref: NCIT:C32714 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001439 ! compact bone tissue relationship: part_of UBERON:0002481 ! bone tissue @@ -214721,7 +213577,6 @@ xref: FMA:224787 xref: Haversian:canal xref: http://www.snomedbrowser.com/Codes/Details/3336003 xref: NCIT:C32713 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0014730 ! osteon @@ -214747,8 +213602,6 @@ def: "A large expansion of the lateral wall of the telencephalon, located in the synonym: "dorsal ventricular ridge" EXACT [] synonym: "DVR" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0000203 ! pallium relationship: present_in_taxon NCBITaxon:8782 ! Aves @@ -214771,7 +213624,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=759 xref: http://en.wikipedia.org/wiki/Allocortex xref: NLX:143557 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -214799,7 +213651,6 @@ synonym: "periallocortex" EXACT [NeuroNames:2315] xref: DHBA:10313 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2315 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0014734 ! allocortex relationship: part_of UBERON:0000956 ! cerebral cortex @@ -214818,7 +213669,6 @@ synonym: "MP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: TAO:0000536 xref: ZFA:0000536 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0014741 {source="lexical"} ! lateral pallium relationship: part_of UBERON:0000203 ! pallium @@ -214834,7 +213684,6 @@ synonym: "DP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: TAO:0000506 xref: ZFA:0000506 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -214853,7 +213702,6 @@ xref: DMBA:15956 xref: TAO:0000391 xref: ZFA:0000391 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -214869,7 +213717,6 @@ id: UBERON:0014751 name: P1 area of pallium (Myxiniformes) def: "Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -214878,7 +213725,6 @@ id: UBERON:0014752 name: P2 area of pallium (Myxiniformes) def: "Area directly deep to the P1 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014751 ! P1 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -214888,7 +213734,6 @@ id: UBERON:0014753 name: P3 area of pallium (Myxiniformes) def: "Area directly deep to the P2 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014752 ! P2 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -214898,7 +213743,6 @@ id: UBERON:0014754 name: P4 area of pallium (Myxiniformes) def: "Area directly deep to the P3 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014753 ! P3 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -214908,7 +213752,6 @@ id: UBERON:0014755 name: P5 area of pallium (Myxiniformes) def: "Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014754 ! P4 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -214927,7 +213770,6 @@ name: hyperpallium apicale synonym: "HA" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] xref: BTO:0003402 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -214936,7 +213778,6 @@ id: UBERON:0014758 name: interstitial part of hyperpallium apicale synonym: "IHA" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0014757 ! hyperpallium apicale @@ -214947,7 +213788,6 @@ def: "The major telecephalic thalamorecipient zone of the tectofugal visual syst synonym: "core region of ectostriatum" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/14681937] synonym: "E" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/16041718] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -215061,7 +213901,6 @@ xref: EMAPA:17703 xref: http://en.wikipedia.org/wiki/Crus_of_diaphragm xref: http://www.snomedbrowser.com/Codes/Details/244668003 xref: VHOG:0001546 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000063 ! organ subunit relationship: attaches_to UBERON:0001130 ! vertebral column @@ -215123,7 +213962,6 @@ synonym: "venae palpebrales" RELATED LATIN [] xref: FMA:51997 xref: http://www.snomedbrowser.com/Codes/Details/152208004 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0001711 ! eyelid @@ -215155,7 +213993,6 @@ xref: FMA:49940 xref: http://en.wikipedia.org/wiki/Lateral_palpebral_arteries xref: http://www.snomedbrowser.com/Codes/Details/369323008 is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014770 ! palpebral artery disjoint_from: UBERON:0014773 {source="lexical"} ! medial palpebral artery relationship: branching_part_of UBERON:0001622 {source="FMA"} ! lacrimal artery @@ -215175,7 +214012,6 @@ xref: FMA:50012 xref: http://en.wikipedia.org/wiki/Medial_palpebral_arteries xref: http://www.snomedbrowser.com/Codes/Details/369331003 is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014770 ! palpebral artery relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery @@ -215242,7 +214078,6 @@ name: liver reticuloendothelial system def: "A reticuloendothelial system that is part of a liver." [OBOL:automatic] xref: BTO:0000831 is_a: UBERON:0000363 ! reticuloendothelial system -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000363 ! reticuloendothelial system intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver @@ -215256,7 +214091,6 @@ synonym: "aponeurosis palatina" EXACT [http://en.wikipedia.org/wiki/Palatine_apo xref: FMA:49429 xref: Palatine:aponeurosis is_a: UBERON:0006614 ! aponeurosis -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006614 ! aponeurosis intersection_of: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0001733 ! soft palate @@ -215265,7 +214099,6 @@ relationship: part_of UBERON:0001733 ! soft palate id: UBERON:0014781 name: stomodeal ectoderm xref: BTO:0004224 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000924 ! ectoderm @@ -215370,7 +214203,6 @@ xref: EMAPA:18274 xref: FMA:54813 xref: http://www.snomedbrowser.com/Codes/Details/368727001 xref: Lingual:septum -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0001723 ! tongue @@ -215511,7 +214343,6 @@ name: nuchal line attachment site def: "Any of the four curved lines on the external surface of the occipital bone that serves as an attachment site for a muscle." [http://en.wikipedia.org/wiki/Nuchal_lines, http://orcid.org/0000-0002-6601-2165] synonym: "nuchal line" RELATED [http://en.wikipedia.org/wiki/Nuchal_lines] xref: Nuchal:lines -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200047 ! attachment site relationship: part_of UBERON:0001676 ! occipital bone @@ -216138,12 +214969,10 @@ id: UBERON:0014895 name: somatic muscle def: "A muscle structure of invertebrates whose origin and insertion sites are in basal side of the epidermis or structures derived from it. The simplest somatic muscles consist of a single cell and associated extracellular structures." [GOC:DOS] synonym: "skeletal muscle" RELATED [FBbt:00005073] -xref: FBbt:00005073 xref: HAO:0001922 is_a: CARO:0000003 is_a: UBERON:0005090 ! muscle structure relationship: attaches_to UBERON:0002416 ! integumental system -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0007095 ! somatic musculature @@ -216170,7 +214999,6 @@ id: UBERON:0014898 name: lamina terminalis of ischium def: "In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area." [AAO:0000881, AAO:LAP] xref: AAO:0000881 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001274 {source="AAO"} ! ischium @@ -216271,7 +215099,6 @@ def: "The pallial region located next to the pallium-subpallium boundary." [http synonym: "VP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: DMBA:15904 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0000204 ! ventral part of telencephalon relationship: part_of UBERON:0000203 ! pallium @@ -216318,7 +215145,6 @@ id: UBERON:0014916 name: velar vocal fold def: "On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas." [https://doi.org/10.1016/j.cub.2013.10.069] comment: Muscle notes: Because the larynx is attached to the caudal end of the pharynx where the IPO is situated, laryngeal retraction brought about by the sternothyroid muscle will automatically put tension on the rostro-caudally oriented velar vocal folds, and could also induce length changes of the folds. Contractions of the palatopharyngeal muscles may also influence the length and shape of the velar vocal folds directly (inducing width changes of the IPO). -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0034681 ! vocal organ relationship: capable_of_part_of GO:0071625 ! vocalization behavior @@ -216348,7 +215174,6 @@ xref: EMAPA:37947 {source="MA:th"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1802 xref: MBA:886 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0013531 ! retrosplenial region [Term] @@ -216365,7 +215190,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225983 xref: http://www.snomedbrowser.com/Codes/Details/342298001 xref: NCIT:C83196 xref: Virchow-Robin:space -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0001981 ! blood vessel @@ -216422,6 +215246,7 @@ synonym: "MZ" BROAD ABBREVIATION [MP:0000792] xref: EMAPA:17546 xref: EMAPA:32713 xref: PBA:294021774 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004062 ! neural tube marginal layer relationship: part_of UBERON:0010403 ! brain marginal zone @@ -216433,6 +215258,7 @@ synonym: "cerebral cortex ventricular zone" RELATED [EMAPA:32707] xref: EMAPA:17547 xref: EMAPA:32707 xref: MA:0003189 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004060 ! neural tube ventricular layer @@ -216444,13 +215270,13 @@ synonym: "SZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] xref: EMAPA:32704 xref: MA:0003188 xref: PBA:294021970 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004040 ! cortical intermediate zone [Term] id: UBERON:0014950 name: layer of developing cerebral cortex -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 {source="EMAPA"} ! cerebral cortex @@ -216465,7 +215291,6 @@ synonym: "proisocortex" RELATED [NeuroNames:2311] synonym: "proisocortical belt" RELATED [NeuroNames:2311] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2311 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001950 ! neocortex [Term] @@ -216643,7 +215468,6 @@ name: supraoccipital endochondral element def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0004747 ! supraoccipital bone union_of: UBERON:0011162 ! supraoccipital cartilage element @@ -216692,7 +215516,6 @@ name: rib endochondral element def: "A rib bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0002228 ! rib union_of: UBERON:0006288 ! rib cartilage element @@ -217128,7 +215951,6 @@ name: basioccipital endochondral element def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001692 ! basioccipital bone union_of: UBERON:0006209 ! basioccipital cartilage element @@ -217175,7 +215997,6 @@ name: exoccipital endochondral element def: "An exoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001693 ! exoccipital bone union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation @@ -217216,7 +216037,6 @@ name: iliac endochondral element def: "An iliac bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001273 ! ilium @@ -217230,7 +216050,6 @@ name: pubic endochondral element def: "A pubic bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001275 ! pubis @@ -217244,7 +216063,6 @@ name: ischial endochondral element def: "An ischial bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001274 ! ischium @@ -217270,7 +216088,6 @@ name: alisphenoid endochondral element def: "An alisphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0006721 ! alisphenoid bone union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation @@ -217283,7 +216100,6 @@ name: orbitosphenoid endochondral element def: "An orbitosphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0002478 ! orbitosphenoid union_of: UBERON:0005687 ! orbitosphenoid cartilage element @@ -217297,7 +216113,6 @@ name: sphenoid endochondral element def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001677 ! sphenoid bone union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation @@ -217310,7 +216125,6 @@ name: limb endochondral element def: "A limb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010363 ! endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: part_of UBERON:0002101 ! limb @@ -217815,8 +216629,13 @@ xref: FMA:61975 xref: http://www.snomedbrowser.com/Codes/Details/361483008 xref: Lamina:terminalis xref: VHOG:0001547 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere +relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0005078 ! lamina terminalis of neural tube +relationship: develops_from UBERON:0006222 ! future diencephalon +relationship: develops_from UBERON:0006238 ! future brain +relationship: develops_from UBERON:0006240 ! future forebrain relationship: immediate_transformation_of UBERON:0005078 ! lamina terminalis of neural tube relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter @@ -217933,7 +216752,6 @@ synonym: "pericardial adipose tissue" EXACT [] xref: FMA:9871 xref: http://www.snomedbrowser.com/Codes/Details/42267001 is_a: UBERON:0003837 ! thoracic segment connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0035814 ! pericardial fat intersection_of: UBERON:0001013 ! adipose tissue intersection_of: adjacent_to UBERON:0002348 ! epicardium @@ -217951,7 +216769,6 @@ name: connective tissue of prostate gland def: "A portion of connective tissue that is part of a prostate gland." [OBOL:automatic] synonym: "connective tissue of prostate" EXACT [FMA:74165] xref: FMA:74165 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue intersection_of: UBERON:0002384 ! connective tissue @@ -218017,7 +216834,6 @@ synonym: "gallbladder infundibulum" EXACT [FMA:76652] synonym: "infundibulum vesicae biliaris" EXACT LATIN [MP:0009465] xref: FMA:76652 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder @@ -218027,7 +216843,6 @@ name: falciform fat def: "A large fat pad that is located at the base of the abdominal wall, in the falciform ligament of the liver." [MURDOCH:768] synonym: "falciform fat depot" RELATED [] synonym: "falciform ligament fat pad" RELATED [] -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003427 ! abdominal fat pad is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015143 ! mesenteric fat pad @@ -218041,7 +216856,6 @@ name: mesenteric fat pad def: "Encapsulated adipose tissue associated with the mesentery." [MP:0008903] synonym: "mesenteric fat depot" EXACT [MP:0008903] is_a: UBERON:0003916 ! fat pad -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0002095 ! mesentery relationship: part_of UBERON:0002095 ! mesentery @@ -218136,7 +216950,6 @@ synonym: "duct of Harder's gland" EXACT [] synonym: "duct of Harderian gland" EXACT [] synonym: "Harderian duct" RELATED [] is_a: UBERON:0000058 ! duct -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0004187 ! Harderian gland relationship: part_of UBERON:0004187 ! Harderian gland @@ -218182,7 +216995,6 @@ synonym: "subbrillar space" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/7559104, synonym: "subconjunctival space" EXACT [] xref: FMA:59083 xref: http://www.snomedbrowser.com/Codes/Details/280957009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001811 ! conjunctiva @@ -218197,7 +217009,6 @@ def: "The two terminal branches of the ophthalmic artery in humans are the dorsa xref: FMA:51956 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery @@ -218212,7 +217023,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/146753008 xref: Zygomatico-orbital:artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery relationship: part_of UBERON:0001614 ! superficial temporal artery @@ -218223,7 +217033,6 @@ comment: The blood supply to the (Harderian) gland has been reported in greatest synonym: "ophthalmotemporal artery" RELATED [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery relationship: supplies UBERON:0004187 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Harderian gland @@ -218241,7 +217050,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/369330002 xref: Supraorbital:artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery relationship: supplies UBERON:0001604 ! levator palpebrae superioris @@ -218266,7 +217074,6 @@ xref: http://en.wikipedia.org/wiki/Inferior_branch_of_oculomotor_nerve xref: http://www.snomedbrowser.com/Codes/Details/280206003 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region intersection_of: UBERON:0001021 ! nerve intersection_of: branching_part_of UBERON:0001643 ! oculomotor nerve @@ -218294,7 +217101,6 @@ xref: http://en.wikipedia.org/wiki/Superior_branch_of_oculomotor_nerve xref: http://www.snomedbrowser.com/Codes/Details/280205004 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region intersection_of: UBERON:0001021 ! nerve intersection_of: branching_part_of UBERON:0001643 ! oculomotor nerve @@ -218312,7 +217118,6 @@ is_a: UBERON:0000970 ! eye intersection_of: UBERON:0000970 ! eye intersection_of: composed_primarily_of UBERON:0000020 ! sense organ relationship: composed_primarily_of UBERON:0000020 ! sense organ -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: present_in_taxon NCBITaxon:6340 {notes="present on tentacular crown", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} ! Annelida relationship: present_in_taxon NCBITaxon:6544 {notes="present on mantle edge in arcacean Bivalvia", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} ! Bivalvia relationship: present_in_taxon NCBITaxon:7588 {notes="The eyes (optic cushions) on the oral surface of Asteroida (Echinodermata), close to the base of the terminal tentacles, are also composed of a number of simple ocelli - as many as 80-200 in certain species", source="http://www.ncbi.nlm.nih.gov/pubmed/21062451"} @@ -218328,11 +217133,6 @@ xref: SPD:0000343 is_a: UBERON:0000957 ! lamina relationship: has_quality PATO:0001297 ! reflectivity relationship: has_quality PATO:0002124 ! laminar -relationship: never_in_taxon NCBITaxon:8782 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} ! Aves -relationship: never_in_taxon NCBITaxon:9321 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} ! Osphranter rufus -relationship: never_in_taxon NCBITaxon:9443 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} ! Primates -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens -relationship: never_in_taxon NCBITaxon:9822 {editor="cjm", source="http://www.ncbi.nlm.nih.gov/pubmed/14738502"} ! Sus relationship: part_of UBERON:0000970 ! eye [Term] @@ -218446,7 +217246,6 @@ synonym: "somite boundary" RELATED [ZFA:0001462] xref: TAO:0001462 xref: XAO:0004074 xref: ZFA:0001462 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0003059 ! presomitic mesoderm @@ -218461,7 +217260,6 @@ def: "Epithelium located in the intersomitic region." [XAO:0004077, XAO:EJS] synonym: "intersomitic epithelium" EXACT [XAO:0004077] synonym: "intersomitic membrane" EXACT [XAO:0004077] xref: XAO:0004077 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0015178 ! somite border @@ -218478,7 +217276,6 @@ synonym: "talus neck" EXACT [FMA:33636] xref: FMA:33636 xref: http://en.wikipedia.org/wiki/Neck_of_talus xref: http://www.snomedbrowser.com/Codes/Details/182104001 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0002395 ! talus @@ -218499,8 +217296,6 @@ xref: FMA:55627 xref: http://www.snomedbrowser.com/Codes/Details/28638008 xref: NCIT:C32346 is_a: UBERON:0001560 ! neck of organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001091 ! calcareous tooth @@ -218521,7 +217316,6 @@ def: "A circulatory organ that is reponsible for pumping lymph throughout the bo xref: Lymph:heart is_a: UBERON:0015229 ! accessory circulatory organ relationship: capable_of GO:0003017 ! lymph circulation -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:8287 ! Sarcopterygii relationship: present_in_taxon NCBITaxon:8342 ! Anura relationship: present_in_taxon NCBITaxon:8493 ! Crocodylidae @@ -218574,7 +217368,6 @@ name: arcuate ligament def: "A ligament that is part of a diaphragm." [OBOL:automatic] xref: EMAPA:19236 xref: FMA:58280 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0000211 ! ligament @@ -218595,7 +217388,6 @@ name: nasal meatus xref: EMAPA:18593 xref: FMA:53146 xref: http://www.snomedbrowser.com/Codes/Details/310212002 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose @@ -218631,7 +217423,7 @@ is_a: UBERON:0015216 ! nasal meatus [Term] id: UBERON:0015222 name: ventral nasal meatus -def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. PPP Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178] +def: "The ventral nasal meatus is found between the ventral nasal concha and the dorsal surface of the hard palate.It connects the nasal vestibule with the nasopharynx. Rostrally it is narrow at the nasal vestibule and widens caudally towards the nasopharyngeal meatus. The ventral nasal meatus is the main passage for air. Apart from olfaction, the nasal cavity functions to warm the inhaled air as it passes through the meatuses over the vascular beds of the mucosa. The air is humidified by the vaporization of tears and serous nasal secretion. The air is cleaned throughout the scattered mucous glands. These glands secrete mucous through the nasal cavity and the mucous serves to trap the large particles that come into contact with it. Clinically in the horse the ventral nasal meatus is the main passage through which a stomach tube can be passed to the pharynx and oesophagus and then to the stomach. This kind of a tube is commonly used when drenching a horse for colic, as well as having many other veterinary applications. The tube has to pass through the ventral nasal meatus to the nasopharyngeal meatus and the caudal nares to reach the pharynx and oesophagus. If the tube is accidentally passed into the dorsal or middle nasal meatuses it would pass to the ethmotubinates and cause massive haemorrhage." [MURDOCH:2178] is_a: UBERON:0015216 ! nasal meatus [Term] @@ -218646,8 +217438,6 @@ name: interventricular foramen intermedium def: "An anatomical conduit that is part of a ventricular septum intermedium." [OBOL:automatic] synonym: "interventricular ostium intermedium" EXACT LATIN [] is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004153 ! ventricular septum intermedium relationship: part_of UBERON:0004153 ! ventricular septum intermedium @@ -218659,7 +217449,6 @@ def: "An anatomical conduit that is part of a atrial septum intermedium." [OBOL: synonym: "interatrial ostium intermedium" EXACT LATIN [] synonym: "ostium intermedium" RELATED [] is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004159 ! atrial septum intermedium relationship: part_of UBERON:0004159 ! atrial septum intermedium @@ -218715,7 +217504,6 @@ synonym: "adult heart" NARROW SENSU [FBbt:00003154, NCBITaxon:50557] synonym: "embryonic/larval heart" NARROW SENSU [FBbt:00001675, NCBITaxon:50557] synonym: "heart" RELATED SENSU [NCBITaxon:50557] xref: FBbt:00003154 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007100 ! primary circulatory organ relationship: part_of UBERON:0015231 {source="FBbt"} ! circulatory system dorsal vessel @@ -218724,7 +217512,7 @@ id: UBERON:0015231 name: circulatory system dorsal vessel def: "A tube that runs longitudinally through the thorax and abdomen, along the inside of the dorsal body wall and that forms the major structural component of the open circulatory system of arthropods." [UBERON:cjm] synonym: "dorsal vessel" RELATED SENSU [FBbt:00058291, NCBITaxon:50557] -xref: FBbt:00003152 +xref: FBbt:00058291 is_a: UBERON:0000055 ! vessel is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0000926 ! mesoderm @@ -218768,7 +217556,6 @@ name: pineal complex def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [http://orcid.org/0000-0002-6601-2165] xref: TAO:0001359 xref: ZFA:0001359 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: dubious_for_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001899 {source="ZFA"} ! epithalamus @@ -218780,10 +217567,8 @@ synonym: "parapineal gland" RELATED [] xref: TAO:0001360 xref: ZFA:0001360 is_a: UBERON:0003103 {source="ZFA"} ! compound organ -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: in_lateral_side_of UBERON:0015238 {gci_relation="part_of", gci_filler="NCBITaxon:117569"} ! pineal complex relationship: in_left_side_of UBERON:0015238 {gci_relation="part_of", gci_filler="NCBITaxon:7954"} ! pineal complex -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0015238 {source="ZFA"} ! pineal complex [Term] @@ -218801,7 +217586,6 @@ xref: EMAPA:18999 xref: FMA:27975 xref: http://www.snomedbrowser.com/Codes/Details/362252008 xref: MA:0003243 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct relationship: part_of UBERON:0000996 {source="EMAPA"} ! vagina @@ -218825,7 +217609,6 @@ name: septal olfactory organ def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/] xref: EMAPA:35764 xref: MA:0001327 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010001 ! cell cluster organ relationship: adjacent_to UBERON:0001706 {modified_from="MA"} ! nasal septum relationship: located_in UBERON:0001997 ! olfactory epithelium @@ -218839,7 +217622,6 @@ def: "A small island of olfactory neuroepithelium lying bilaterally at the ventr synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015245 {source="MA"} ! septal olfactory organ relationship: has_part CL:0000848 ! microvillous olfactory receptor neuron relationship: has_part UBERON:0002232 ! olfactory gland @@ -218857,7 +217639,6 @@ xref: FMA:7464 xref: http://www.snomedbrowser.com/Codes/Details/361954003 xref: MA:0003114 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004119 ! endoderm-derived structure relationship: connects UBERON:0002182 ! main bronchus relationship: connects UBERON:0003126 ! trachea relationship: part_of UBERON:0003126 {source="MA"} ! trachea @@ -218965,7 +217746,6 @@ def: "A mesenchyme that is part of a urethra." [OBOL:automatic] xref: EMAPA:37786 {source="MA:th"} xref: MA:0002648 is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -218979,7 +217759,6 @@ synonym: "valve or ureter" EXACT [] xref: EMAPA:37781 {source="MA:th"} xref: MA:0002658 is_a: UBERON:0003978 ! valve -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0000056 ! ureter relationship: capable_of GO:0035809 ! regulation of urine volume @@ -219056,7 +217835,6 @@ name: subcutaneous lymph node def: "A lymph node that is part of a hypodermis." [OBOL:automatic] xref: MA:0003028 is_a: UBERON:0000029 ! lymph node -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0002072 ! hypodermis relationship: part_of UBERON:0002072 ! hypodermis @@ -219124,7 +217902,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/245341003 xref: MA:0003068 xref: NCIT:C77651 is_a: UBERON:0000029 {source="MA"} ! lymph node -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0007644 ! thoracic lymph node relationship: located_in UBERON:0003728 ! mediastinum @@ -219182,7 +217959,6 @@ xref: FMA:20432 xref: http://www.snomedbrowser.com/Codes/Details/361710000 xref: MA:0003093 is_a: UBERON:0000014 ! zone of skin -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001300 ! scrotum @@ -219343,7 +218119,6 @@ xref: NCIT:C32675 xref: NeuroNamesCNID:176 xref: NLX:144462 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: in_anterior_side_of UBERON:0002336 ! corpus callosum relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002336 ! corpus callosum @@ -219445,7 +218220,6 @@ def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:au xref: FMA:49059 xref: http://www.snomedbrowser.com/Codes/Details/368783000 is_a: UBERON:0003386 ! smooth muscle of eye -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004774 ! inferior eyelid tarsus relationship: part_of UBERON:0004774 ! inferior eyelid tarsus @@ -219516,8 +218290,6 @@ name: duct of olfactory gland def: "A duct that is part of a olfactory gland." [OBOL:automatic] synonym: "olfactory gland duct" EXACT [] is_a: UBERON:0000058 ! duct -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002232 ! olfactory gland relationship: located_in UBERON:0005386 ! olfactory segment of nasal mucosa @@ -219529,8 +218301,6 @@ name: acinus of olfactory gland def: "An acinus that is part of a olfactory gland." [OBOL:automatic] synonym: "acinar part of olfactory gland" EXACT [] synonym: "olfactory gland acinus" EXACT [] -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0002232 ! olfactory gland @@ -219558,7 +218328,6 @@ def: "Any anatomical conduit which is part of the upper respiratory tract." [htt synonym: "respiratory conduit" RELATED [FMA:265132] xref: FMA:265132 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0001557 ! upper respiratory tract relationship: part_of UBERON:0001557 ! upper respiratory tract @@ -219568,7 +218337,6 @@ id: UBERON:0015788 name: olfactory apparatus chamber def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] xref: FMA:265136 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015787 ! upper respiratory conduit relationship: part_of UBERON:0000004 ! nose @@ -219616,7 +218384,6 @@ name: prostate gland dorsal lobe xref: EMAPA:29808 xref: MA:0003124 is_a: UBERON:0001328 ! lobe of prostate -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0008808 ! prostate gland dorsolateral lobe [Term] @@ -219675,7 +218442,6 @@ def: "A blood vessel that is part of a liver." [OBOL:automatic] synonym: "hepatic blood vessel" RELATED [EMAPA:35498] xref: EMAPA:35498 xref: MA:0003137 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002107 ! liver @@ -220012,7 +218778,6 @@ name: interpedicular line def: "An anatomical line that connects two successive vertebral pedicles. The length of this line is known as the interpedicular distance." [http://orcid.org/0000-0002-6601-2165] synonym: "inter-vertebral-pedicle line" EXACT [] synonym: "interpedicular distance" RELATED [HP:0008450] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line intersection_of: connects UBERON:0001078 {minCardinality="2", maxCardinality="2"} ! pedicle of vertebra @@ -220025,7 +218790,6 @@ name: ventral ectodermal ridge def: "A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud." [http://www.ncbi.nlm.nih.gov/pubmed/7486014] synonym: "VER" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/7486014] xref: EMAPA:36491 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0002533 ! post-anal tail bud @@ -220295,7 +219059,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0229317 xref: http://www.snomedbrowser.com/Codes/Details/362545007 xref: NCIT:C32420 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna [Term] @@ -220308,7 +219071,6 @@ xref: FMA:60128 xref: http://www.snomedbrowser.com/Codes/Details/300732009 xref: NCIT:C33495 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001705 {source="FMA"} ! nail [Term] @@ -220491,7 +219253,6 @@ xref: http://en.wikipedia.org/wiki/Deep_parotid_lymph_nodes xref: http://www.snomedbrowser.com/Codes/Details/279142004 is_a: UBERON:0015857 {source="FMA"} ! parotid lymph node is_a: UBERON:0015918 ! deep lymph node -relationship: never_in_taxon NCBITaxon:10090 {source="http://www.ncbi.nlm.nih.gov/pubmed/16624319"} ! Mus musculus [Term] id: UBERON:0016394 @@ -220652,7 +219413,6 @@ xref: FMA:19627 xref: http://en.wikipedia.org/wiki/Corona_of_glans_penis xref: http://www.snomedbrowser.com/Codes/Details/362274002 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis @@ -220663,7 +219423,6 @@ subset: pheno_slim synonym: "glans penile base" EXACT [FMA:19649] xref: FMA:19649 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis @@ -220836,9 +219595,7 @@ synonym: "glabellar surface of frontal bone" EXACT [FMA:57136] xref: FMA:52851 xref: FMA:57136 xref: http://www.snomedbrowser.com/Codes/Details/137561005 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: connects UBERON:0011576 {minCardinality="2", maxCardinality="2"} ! supraorbital ridge relationship: connects UBERON:0011576 ! supraorbital ridge @@ -220960,7 +219717,6 @@ synonym: "esophageal hiatus of diaphragm" EXACT [FMA:58289] synonym: "oesophageal aperture" EXACT [FMA:58289] synonym: "oesophageal hiatus" EXACT [FMA:58289] xref: FMA:58289 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: conduit_for UBERON:0001043 ! esophagus @@ -221004,7 +219760,6 @@ synonym: "nasal ridge" RELATED [HP:0011119] xref: FMA:59517 xref: http://www.snomedbrowser.com/Codes/Details/368114008 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] @@ -221093,7 +219848,6 @@ synonym: "hepatic stroma" EXACT [FMA:17553] synonym: "stroma of liver" EXACT [FMA:17553] xref: FMA:17553 is_a: UBERON:0003891 ! stroma -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver @@ -221114,7 +219868,6 @@ xref: FMA:15813 xref: http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson xref: http://www.snomedbrowser.com/Codes/Details/362185005 is_a: UBERON:0003893 ! capsule -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0002107 ! liver relationship: bounding_layer_of UBERON:0002107 ! liver @@ -221137,7 +219890,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1305372 xref: MA:0003078 xref: NCIT:C32232 is_a: UBERON:0000029 ! lymph node -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -221151,7 +219903,6 @@ synonym: "plaque" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BTO:0000338 xref: Dental:plaque xref: MESH:A12.300.300 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: adjacent_to UBERON:0001091 {source="BTO"} ! calcareous tooth relationship: part_of UBERON:0000165 ! mouth @@ -221218,7 +219969,6 @@ def: "Skeletal element that functionally replaces the notochord[VSAP,modified]." synonym: "centrum" BROAD [VSAO:0000183] synonym: "centrum of vertebra" EXACT [] xref: VSAO:0000183 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 {source="VSAO"} ! skeletal element property_value: dc-contributor https://github.com/cmungall relationship: part_of UBERON:0010913 {source="VSAO"} ! vertebral element @@ -221232,7 +219982,6 @@ synonym: "foramen spinosum" EXACT LATIN [http://en.wikipedia.org/wiki/Foramen_sp xref: FMA:53156 xref: Foramen:spinosum xref: http://www.snomedbrowser.com/Codes/Details/369440000 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0036143 ! meningeal branch of mandibular nerve @@ -221282,7 +220031,6 @@ def: "An epicondyle that is part of a humerus." [OBOL:automatic] xref: FMA:321693 xref: http://www.snomedbrowser.com/Codes/Details/272693008 xref: NCIT:C114187 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle intersection_of: UBERON:0009978 ! epicondyle @@ -221350,7 +220098,6 @@ synonym: "lumen of fundus of stomach" EXACT [FMA:17077] synonym: "lumen of stomach fundus" EXACT [] xref: EMAPA:18382 xref: FMA:17077 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001160 ! fundus of stomach @@ -221365,7 +220112,6 @@ xref: EMAPA:31868 xref: FMA:19930 xref: http://www.snomedbrowser.com/Codes/Details/368065003 xref: Umbilical:ring -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000478 {source="EMAPA"} ! extraembryonic structure relationship: surrounds UBERON:0007118 ! umbilicus @@ -221380,7 +220126,6 @@ synonym: "Müllerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:18328 xref: FMA:72175 xref: MA:0003239 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: connects UBERON:0003890 ! Mullerian duct relationship: part_of UBERON:0000164 ! primitive urogenital sinus @@ -221443,7 +220188,6 @@ synonym: "doudenal lumen" EXACT [FMA:FMA] synonym: "duodenal lumen" EXACT [FMA:FMA] xref: EMAPA:19080 xref: FMA:14589 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0002114 ! duodenum @@ -221486,7 +220230,6 @@ synonym: "muscle layer of prostatic urethra" EXACT [FMA:FMA] synonym: "muscular coat of prostatic urethra" EXACT [FMA:FMA] xref: EMAPA:30956 xref: FMA:19699 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0001335 ! prostatic urethra @@ -221513,7 +220256,6 @@ synonym: "jejunal lumen" EXACT [FMA:FMA] synonym: "jejunum lumen" EXACT [FMA:FMA] xref: EMAPA:18729 xref: FMA:14590 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0002115 ! jejunum @@ -221569,7 +220311,6 @@ synonym: "muscular layer of spongy urethra" EXACT [FMA:FMA] synonym: "tunica muscularis urethrae spongiosa" EXACT LATIN [FMA:19701, FMA:TA] xref: EMAPA:30950 xref: FMA:19701 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -221634,8 +220375,6 @@ xref: FMA:61823 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1210 xref: http://www.snomedbrowser.com/Codes/Details/272632001 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: fma_set_term FMA:77800 relationship: part_of UBERON:0001869 ! cerebral hemisphere @@ -221929,7 +220668,6 @@ id: UBERON:0016565 name: cerebral blood vessel def: "A blood vessel that is part of a cerebellum." [OBOL:automatic] is_a: UBERON:0003499 ! brain blood vessel -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002037 ! cerebellum @@ -221951,9 +220689,7 @@ comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/1 synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] synonym: "otolith membrane" NARROW [] xref: FMA:75570 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="FMA"} ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: bounding_layer_of UBERON:0002518 {source="Wikipedia"} ! otolith organ relationship: part_of UBERON:0001862 {source="MA-abduced"} ! vestibular labyrinth relationship: part_of UBERON:0002518 ! otolith organ @@ -221963,8 +220699,6 @@ id: UBERON:0016568 name: gelatinous layer of statoconial membrane xref: FMA:75588 is_a: UBERON:0000476 {source="FMA"} ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane [Term] @@ -221972,8 +220706,6 @@ id: UBERON:0016569 name: subcupular meshwork of statoconial membrane def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: adjacent_to UBERON:0000483 ! epithelium intersection_of: adjacent_to UBERON:0002519 ! otolithic part of statoconial membrane @@ -222205,7 +220937,6 @@ id: UBERON:0016621 name: lunge feeding organ def: "A fibrous capsule located between the jaws of rorqual whales that contains a gelatinous substance and papillae bearing mechanorecaptors." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] is_a: UBERON:0000020 ! sense organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013765 ! digestive system element relationship: has_part UBERON:0016630 ! neurovascular bundle relationship: only_in_taxon NCBITaxon:9765 ! Balaenopteridae @@ -222215,7 +220946,6 @@ relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0016622 name: lunge feeding organ papilla -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001995 ! papilla intersection_of: UBERON:2001995 ! papilla intersection_of: part_of UBERON:0016621 ! lunge feeding organ @@ -222233,7 +220963,6 @@ relationship: part_of UBERON:0016618 ! baleen feeding system id: UBERON:0016628 name: stem of Y-shaped fibrocartilage skeleton of ventral pouch synonym: "YSF stem" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch @@ -222241,7 +220970,6 @@ relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventr id: UBERON:0016629 name: branch of Y-shaped fibrocartilage skeleton of ventral pouch synonym: "YSF branch" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch @@ -222254,7 +220982,6 @@ def: "A body structure consisting of nerves traveling together with arteries, ve xref: FMA:32419 xref: http://linkedlifedata.com/resource/umls/id/C0824497 xref: NCIT:C74603 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: has_part UBERON:0001021 ! nerve relationship: has_part UBERON:0002049 ! vasculature @@ -222283,7 +221010,6 @@ synonym: "isthmus of uterine tube" RELATED [FMA:18306] synonym: "isthmus tubae uterinae" EXACT LATIN [FMA:18306, FMA:TA] synonym: "uterine tube isthmus" RELATED [FMA:18306] xref: FMA:18306 -is_a: UBERON:0003889 ! fallopian tube is_a: UBERON:0013515 {source="FMA"} ! subdivision of oviduct relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube @@ -222333,7 +221059,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/90928005 xref: MBA:993 xref: Premotor:cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -222359,7 +221084,6 @@ xref: FMA:224858 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3176 xref: http://en.wikipedia.org/wiki/Supplementary_motor_area is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000956 ! cerebral cortex @@ -222567,7 +221291,6 @@ def: "The dorsal region of the optic cup that gives rise to the dorsal part of t synonym: "dorsal optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: in_dorsal_side_of UBERON:0003072 ! optic cup relationship: in_dorsal_side_of UBERON:0003072 ! optic cup @@ -222581,7 +221304,6 @@ comment: optic fissure, hyaloid artery, pecten synonym: "ventral optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventral region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: in_ventral_side_of UBERON:0003072 ! optic cup relationship: in_ventral_side_of UBERON:0003072 ! optic cup @@ -222751,7 +221473,6 @@ xref: EMAPA:19194 xref: http://linkedlifedata.com/resource/umls/id/C0229549 xref: http://www.snomedbrowser.com/Codes/Details/264453001 xref: NCIT:C12357 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: continuous_with UBERON:0003689 ! sella turcica relationship: part_of UBERON:0001677 ! sphenoid bone @@ -222823,7 +221544,6 @@ synonym: "extraembryonic component" EXACT [AEO:0000195] xref: AEO:0000195 xref: EHDAA2:0000003 xref: EMAPA:16042 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure relationship: adjacent_to UBERON:0002050 ! embryonic structure relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage @@ -222974,8 +221694,6 @@ synonym: "descending aortic arch" EXACT [HP:0012305] synonym: "descending limb of arch of aorta" EXACT [FMA:13082] synonym: "descending trunk of aortic arch" EXACT [FMA:13082] xref: FMA:13082 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001508 {source="FMA"} ! arch of aorta @@ -222986,8 +221704,6 @@ def: "Area of aorta proximal to the ductus arteriosus." [http://orcid.org/0000-0 synonym: "preligamental region of aortic arch" EXACT [FMA:3774] xref: FMA:3774 xref: http://www.snomedbrowser.com/Codes/Details/197773005 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta @@ -222998,8 +221714,6 @@ def: "Area of aorta distal to the ductus arteriosus." [http://orcid.org/0000-000 synonym: "postligamental region of aortic arch" EXACT [FMA:3776] xref: FMA:3776 xref: http://www.snomedbrowser.com/Codes/Details/197852003 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta @@ -223014,8 +221728,6 @@ xref: FMA:3771 xref: FMA:3778 xref: http://www.snomedbrowser.com/Codes/Details/197677000 xref: http://www.snomedbrowser.com/Codes/Details/197932000 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta @@ -223045,7 +221757,6 @@ synonym: "fibula metaphysis" EXACT [FMA:33745] synonym: "fibular metaphysis" EXACT [] xref: FMA:33745 is_a: UBERON:0001438 ! metaphysis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0001446 ! fibula relationship: part_of UBERON:0001446 ! fibula @@ -223069,8 +221780,6 @@ def: "A linear flat evelation on a tooth." [http://en.wikipedia.org/wiki/Dental_ synonym: "crista of tooth" EXACT [] synonym: "tooth ridge" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/245699009 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001091 ! calcareous tooth @@ -223143,7 +221852,6 @@ name: rostral margin of orbit alt_id: BSPOTEMP:58938a8e-359c-49d8-b3f7-5e1fd7e1a109 alt_id: http://purl.bioontology.org/ontology/provisional/58938a8e-359c-49d8-b3f7-5e1fd7e1a109 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001697 ! orbit of skull [Term] @@ -223211,7 +221919,6 @@ name: exoccipital-atlas joint alt_id: UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4 def: "A synovial joint that connects a vertebral bone 1 and connects a exoccipital bone." [OBOL:automatic] synonym: "atlanto-exoccipital joint" EXACT [UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0002217 ! synovial joint intersection_of: connects UBERON:0001092 ! vertebral bone 1 @@ -223317,7 +222024,6 @@ def: "A small protuberence on the lingual surface of the premaxilla, immediately synonym: "incisive bone" RELATED [] synonym: "incisive process" RELATED [] xref: UBERONTEMP:b0379d68-e54b-4dac-851c-0336cfb85a8f -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -223329,7 +222035,7 @@ alt_id: http://purl.bioontology.org/ontology/provisional/c4f989c4-2805-49a3-8241 def: "An anatomical group consisting of a placental caruncle and a placental cotyldeon, a placental unit in some mammals such as ruminants." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] synonym: "placentome" EXACT [PHENOSCAPE:ad] synonym: "placentomes" RELATED PLURAL [] -is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034921 ! multi organ part structure relationship: has_part UBERON:0010008 ! placental cotyledon @@ -223351,7 +222057,6 @@ name: intertarsal sesamoid alt_id: http://purl.bioontology.org/ontology/provisional/c97fd8d8-cf3e-4326-938d-bea58477423d def: "A sesamoid element that is part of a tarsal skeleton." [OBOL:automatic] synonym: "tarsal sesamoid" RELATED [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011141 ! appendicular ossicle is_a: UBERON:0013631 ! sesamoid element intersection_of: UBERON:0013631 ! sesamoid element @@ -223490,7 +222195,6 @@ name: cingulum of upper canine tooth synonym: "cingulum of maxillary canine tooth" EXACT [FMA:56752] synonym: "upper canine tooth cingulum" EXACT [FMA:56752] xref: FMA:56752 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013613 ! upper jaw cingulum is_a: UBERON:0017297 ! cingulum of canine tooth intersection_of: UBERON:0017295 ! cingulum of tooth @@ -223503,7 +222207,6 @@ name: cingulum of lower canine tooth synonym: "cingulum of mandibular canine tooth" EXACT [FMA:56753] synonym: "lower canine tooth cingulum" EXACT [FMA:56753] xref: FMA:56753 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013612 ! lower jaw cingulum is_a: UBERON:0017297 ! cingulum of canine tooth intersection_of: UBERON:0017295 ! cingulum of tooth @@ -223659,7 +222362,6 @@ synonym: "transverse folds of rectum" EXACT [FMA:75657] synonym: "transverse folds of rectum" RELATED [http://en.wikipedia.org/wiki/Houston_valve] xref: FMA:75657 xref: Houston:valve -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001052 ! rectum @@ -223667,7 +222369,6 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0017627 name: rectal valve def: "A thin diaphragm located in the posterior fifth of the intestine of some Centrolophidae, e.g. Seriolella punctata, Schedophilus huttoni and Psenes pellucidus, or in others a sphincter-like constriction, e.g. Seriolella brama. A deep purple fluid was confined to the valve in S. punctata, but was found throughout the intestine in the other two species referred to. The fluid might be used to void a coloured cloud to distract or deter a predator." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0001052 ! rectum @@ -223679,7 +222380,6 @@ synonym: "fascis mirabilis" RELATED [http://www.briancoad.com/dictionary/complet synonym: "gas gland" EXACT [] synonym: "red gland" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "red gland of gas bladder" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 ! gland is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0002530 ! gland @@ -223702,7 +222402,6 @@ id: UBERON:0017631 name: calcified structure of brain xref: Corpora:arenacea is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: composed_primarily_of CHEBI:35156 ! calcium salt intersection_of: part_of UBERON:0000955 ! brain @@ -223783,7 +222482,6 @@ synonym: "marginal sinus (v. Szily)" EXACT [] synonym: "marginal sinus of von Szily" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/361511003 is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0010312 ! immature eye relationship: part_of UBERON:0003072 ! optic cup [Term] @@ -223929,7 +222627,6 @@ name: ventral surface of penis subset: pheno_slim synonym: "urethral surface of penis" EXACT [FMA:19624] xref: FMA:19624 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: in_ventral_side_of UBERON:0000989 ! penis @@ -223983,9 +222680,7 @@ subset: pheno_slim synonym: "facies interna (os frontale)" EXACT [FMA:52856] synonym: "facies interna ossis frontalis" EXACT LATIN [FMA:52856, FMA:TA] xref: FMA:52856 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] @@ -224143,7 +222838,6 @@ synonym: "velopharyngeal sphincter" EXACT [http://medical-dictionary.thefreedict xref: FMA:46684 xref: http://www.snomedbrowser.com/Codes/Details/244801005 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010234 {source="FMA"} ! palatopharyngeus muscle [Term] @@ -224154,7 +222848,6 @@ synonym: "parafoveal belt" RELATED [] synonym: "parafoveal retina" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/264120002 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea relationship: surrounds UBERON:0001786 ! fovea centralis @@ -224166,7 +222859,6 @@ synonym: "perifoveal belt" RELATED [] synonym: "perifoveal retina" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/280617008 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea relationship: surrounds UBERON:0001786 ! fovea centralis @@ -224178,7 +222870,6 @@ synonym: "foveola" RELATED [] xref: http://en.wikipedia.org/wiki/Foveola xref: http://www.snomedbrowser.com/Codes/Details/399857002 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001786 ! fovea centralis [Term] @@ -224275,7 +222966,6 @@ synonym: "renal pelvis of left kidney" EXACT [FMA:15579] xref: FMA:15579 xref: http://www.snomedbrowser.com/Codes/Details/243436005 is_a: UBERON:0001224 ! renal pelvis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0001223 ! left ureter relationship: part_of UBERON:0001223 ! left ureter @@ -224289,7 +222979,6 @@ synonym: "pelvis of right ureter" EXACT [FMA:15578] xref: FMA:15578 xref: http://www.snomedbrowser.com/Codes/Details/243419002 is_a: UBERON:0001224 ! renal pelvis -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0001222 ! right ureter relationship: part_of UBERON:0001222 ! right ureter @@ -224401,7 +223090,6 @@ relationship: has_quality PATO:0002462 ! collagenous id: UBERON:0018136 name: maxillary fenestra def: "A fenestra or hole which pierces the maxilla anterior to the antorbital fenestra." [http://palaeos.com/vertebrates/glossary/glossaryM.html] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0002397 ! maxilla @@ -224411,7 +223099,6 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:0018137 name: premaxillary fenestra def: "A fenestra that is part of a premaxilla." [OBOL:automatic] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0002244 ! premaxilla @@ -224429,7 +223116,6 @@ synonym: "lobus glandulae mammariae" RELATED LATIN [BTO:0004718] xref: BTO:0004718 xref: http://linkedlifedata.com/resource/umls/id/C0222616 xref: NCIT:C93232 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009912 ! anatomical lobe relationship: has_part UBERON:0001912 ! lobule of mammary gland relationship: part_of UBERON:0000310 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! breast @@ -224455,14 +223141,13 @@ xref: BAMS:APS xref: BIRNLEX:1096 xref: DHBA:10642 xref: FMA:61891 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 xref: http://en.wikipedia.org/wiki/Anterior_perforated_substance xref: http://linkedlifedata.com/resource/umls/id/C0162436 xref: http://www.snomedbrowser.com/Codes/Details/369108006 xref: UMLS:C0162436 {source="BIRNLEX:1096"} is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -224506,7 +223191,6 @@ is_a: UBERON:0003458 ! neck bone intersection_of: UBERON:0002228 ! rib intersection_of: connected_to UBERON:0002413 ! cervical vertebra relationship: connected_to UBERON:0002413 ! cervical vertebra -relationship: never_in_taxon NCBITaxon:9606 {source="should be all Theria, see https://github.com/obophenotype/mouse-anatomy-ontology/issues/116"} ! Homo sapiens relationship: part_of UBERON:0005434 ! cervical region [Term] @@ -224517,7 +223201,6 @@ is_a: UBERON:0002228 ! rib intersection_of: UBERON:0002228 ! rib intersection_of: connected_to UBERON:0002414 ! lumbar vertebra relationship: connected_to UBERON:0002414 ! lumbar vertebra -relationship: never_in_taxon NCBITaxon:32525 ! Theria relationship: part_of RO:0002577 ! system [Term] @@ -224546,14 +223229,14 @@ relationship: produced_by UBERON:0009645 ! ampullary gland [Term] id: UBERON:0018149 name: angle of oral opening -comment: Serves as attachment site for zygomaticus major muscle +def: "The lateral limit of each lateral part of the oral fissure." [https://orcid.org/0000-0002-2825-0621, https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/Angle-of-mouth] +comment: Serves as attachment site for zygomaticus major muscle. synonym: "angle of mouth" EXACT [FMA:77269] synonym: "mouth angle" EXACT [FMA:77269] xref: FMA:77269 xref: http://www.snomedbrowser.com/Codes/Details/263940002 xref: MFMO:0000145 -is_a: CARO:0000000 ! anatomical entity -is_a: UBERON:0007651 ! anatomical junction +is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000166 {source="MFMO-modified"} ! oral opening [Term] @@ -224564,7 +223247,6 @@ synonym: "lower lip skin" EXACT [FMA:24767] xref: FMA:24767 xref: http://www.snomedbrowser.com/Codes/Details/281630002 is_a: UBERON:0001458 ! skin of lip -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001835 ! lower lip relationship: part_of UBERON:0001835 ! lower lip @@ -224577,7 +223259,6 @@ synonym: "upper lip skin" EXACT [FMA:24765] xref: FMA:24765 xref: http://www.snomedbrowser.com/Codes/Details/281629007 is_a: UBERON:0001458 ! skin of lip -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:1000021 ! skin of face intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001834 ! upper lip @@ -224596,7 +223277,6 @@ xref: FMA:56721 xref: http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane xref: http://www.snomedbrowser.com/Codes/Details/279594005 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane [Term] @@ -224607,7 +223287,6 @@ synonym: "pars tensa membranae tympanicae" EXACT LATIN [FMA:56722, FMA:TA] xref: FMA:56722 xref: http://www.snomedbrowser.com/Codes/Details/362555006 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane [Term] @@ -224675,7 +223354,6 @@ synonym: "rau's process" EXACT [FMA:52771] xref: FMA:52771 xref: http://www.snomedbrowser.com/Codes/Details/368922002 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone @@ -224708,7 +223386,7 @@ subset: pheno_slim synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] synonym: "pulmonary lymphatic vasculature" RELATED [] xref: FMA:67999 -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision intersection_of: part_of UBERON:0002048 ! lung @@ -224725,7 +223403,6 @@ synonym: "lymphatic vessel of lung" EXACT [] xref: FMA:234006 xref: http://www.snomedbrowser.com/Codes/Details/321862009 is_a: UBERON:0003456 ! respiratory system lymphatic vessel -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung @@ -224780,8 +223457,6 @@ xref: Labyrinthine:artery xref: NCIT:C32834 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001633 {gci_relation="part_of", gci_filler="NCBITaxon:9606", cases="15%", source="WP"} ! basilar artery relationship: branching_part_of UBERON:0009689 {gci_relation="part_of", gci_filler="NCBITaxon:9606", cases="85-100%", source="WP"} ! anterior inferior cerebellar artery relationship: connected_to UBERON:0009689 {subset="human_reference_atlas"} ! anterior inferior cerebellar artery @@ -224797,7 +223472,6 @@ synonym: "sweat gland of axilla" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000382 {source="ISBN:0123813611"} ! apocrine sweat gland intersection_of: UBERON:0001820 ! sweat gland intersection_of: part_of UBERON:0009472 ! axilla -relationship: never_in_taxon NCBITaxon:10088 {source="ISBN:0123813611"} ! Mus relationship: part_of UBERON:0009472 ! axilla [Term] @@ -224886,7 +223560,6 @@ id: UBERON:0018239 name: rhombomere boundary def: "A boundary delimiting a rhombomere." [GO:0021654] synonym: "rhombomere junction" EXACT [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0001892 ! rhombomere @@ -224908,7 +223581,6 @@ is_a: UBERON:0008876 ! hypodermis skeletal muscle layer relationship: attaches_to UBERON:0000976 {gci_filler="NCBITaxon:9265", gci_relation="part_of", notes="in the opossum the panniculus carnosis attaches to the humerus", source="https://doi.org/10.2307/1373999", source="FEED:rd"} ! humerus relationship: deep_to UBERON:0013488 ! panniculus adiposus relationship: innervated_by UBERON:0001780 {source="FFED:cw"} ! spinal nerve -relationship: never_in_taxon NCBITaxon:9606 {notes="vestigial or barely detectable"} ! Homo sapiens relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: present_in_taxon NCBITaxon:9261 {notes="by contraction of various parts of the panniculus carnosus, the short-beaked echidna can change shape, the most characteristic shape change being achieved by rolling itself into a ball when threatened, so protecting its belly and presenting a defensive array of sharp spines"} @@ -224939,7 +223611,6 @@ xref: FMA:52901 xref: http://en.wikipedia.org/wiki/Horizontal_plate_of_palatine_bone xref: http://www.snomedbrowser.com/Codes/Details/368686004 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -225095,7 +223766,6 @@ relationship: part_of RO:0002577 ! system id: UBERON:0018257 name: submucosa of digestive tract def: "Any portion of submucosa that lines the digestive tract." [http://orcid.org/0000-0002-6601-2165] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001555 ! digestive tract @@ -225138,8 +223808,6 @@ synonym: "entorhinal area, medial part, dorsal zone, layers 1-6" RELATED [NeuroN xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3141 xref: MBA:926 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] @@ -225152,14 +223820,12 @@ synonym: "ventral zone of the medial part of the entorhinal area" RELATED [Neuro xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3142 xref: MBA:934 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018264 name: dorsal lateral ganglionic eminence def: "The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb." [GO:0021851] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004025 ! lateral ganglionic eminence @@ -225169,7 +223835,6 @@ name: anterior root of zygomatic arch def: "The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone." [MFMO:0000109] xref: MFMO:0000109 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002500 {source="MFMO"} ! zygomatic arch [Term] @@ -225184,7 +223849,6 @@ id: UBERON:0018267 name: atlantal spinal nerve foramen def: "Foramen housing the root of the spinal nerve seen in the neural arch of the first vertebrae (atlas). (see Edwards 1976)." [PHENOSCAPE:nizar] xref: UBERONTEMP:4fd613b3-3fd4-422e-a2f7-d7a2cde79d60 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen is_a: UBERON:4200105 ! nerve foramen relationship: part_of UBERON:0005814 ! arch of atlas @@ -225268,7 +223932,6 @@ is_a: UBERON:0003913 ! tooth-like structure intersection_of: UBERON:0003913 ! tooth-like structure intersection_of: capable_of_part_of GO:0035188 ! hatching relationship: capable_of_part_of GO:0035188 ! hatching -relationship: never_in_taxon NCBITaxon:9347 ! Eutheria [Term] id: UBERON:0018277 @@ -225283,7 +223946,6 @@ relationship: capable_of_part_of GO:0035188 ! hatching id: UBERON:0018278 name: epidermal egg tooth def: "Epidermal outgrowth that facilitates breaking of the eggshell in archosaurs and monotremes." [PHENOSCAPE:alex] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0018276 ! egg tooth intersection_of: UBERON:0018276 ! egg tooth intersection_of: part_of UBERON:0001003 ! skin epidermis @@ -225467,7 +224129,6 @@ id: UBERON:0018297 name: resorption pit def: "A pit formed in an existing functional tooth, causing resorption of the surrounding dentine and periodontal tissues. (modified from LeBlanc and Reisz 2013, see figures 8, 10 for more details)." [PHENOSCAPE:curators] xref: UBERONTEMP:4fffbeb1-0774-4eb2-860e-5b50dece221c -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001708 ! jaw skeleton @@ -225487,7 +224148,6 @@ synonym: "lower jaw symphyseal tooth" EXACT [] synonym: "symphyseal tooth" BROAD [] xref: UBERONTEMP:2f99ad4b-d842-4ae9-8886-87ee98811fe5 is_a: UBERON:0003268 ! tooth of lower jaw -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0018542 ! mandibular symphyseal region relationship: adjacent_to UBERON:0006606 ! mandibular symphysis @@ -225534,8 +224194,6 @@ synonym: "adrenal gland tissue" EXACT [ncithesaurus:Adrenal_Gland_Tissue] xref: NCIT:C32051 xref: UBERONTEMP:a7bf197b-0db2-467e-824e-be45b39e2672 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: part_of UBERON:0002369 ! adrenal gland @@ -225554,17 +224212,18 @@ id: UBERON:0018305 name: bicipital surface def: "Region of the humerus associated with the biceps attachment areas." [PHENOSCAPE:Nizar] xref: UBERONTEMP:1aa93660-3c3d-4aff-94fa-93ea38c82df8 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:0018306 -name: bulge -def: "Expanded and swollen region of a surface that is otherwise relatively flat." [PHENOSCAPE:Nizar] +name: obsolete bulge +def: "OBSOLETE expanded and swollen region of a surface that is otherwise relatively flat" [PHENOSCAPE:Nizar] +comment: Term is redundant with UBERON:0010188 'protuberance' . subset: upper_level xref: UBERONTEMP:dfedeba6-f608-4adc-9e69-b1169f6b0fb3 -is_a: UBERON:0003102 ! surface structure +is_obsolete: true +replaced_by: UBERON:0010188 [Term] id: UBERON:0018307 @@ -225588,7 +224247,7 @@ name: central figure of scute def: "Anatomical structure consisting of a pattern of ridges on an osteoderm." [PHENOSCAPE:curators] synonym: "central figure" EXACT [] xref: UBERONTEMP:56dad3b4-46b2-4823-a7b2-88a10ef98ae3 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0008201 ! scute [Term] @@ -225636,7 +224295,6 @@ name: choanal groove def: "Grooves on the palatine bone which denote the passage of the choana or internal naris." [PHENOSCAPE:Alex] xref: UBERONTEMP:40f3ccb2-6447-4d14-b3db-b1c4bb41464b is_a: UBERON:0006846 ! surface groove -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -225652,7 +224310,6 @@ id: UBERON:0018316 name: cuboid facet of calcaneum def: "Facet on the anterior surface of the calcaneus (as called calcaneum) for the articulation of the cuboid bone." [PHENOSCAPE:Alex] xref: UBERONTEMP:a3287636-2522-466e-9310-942cc1f3cd35 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001450 ! calcaneus @@ -225672,7 +224329,6 @@ id: UBERON:0018318 name: entocarotid fossa def: "A depression on the lateral surface of the braincase posterior to the Vidian canal (Conrad 2008)." [PHENOSCAPE:Alex] xref: UBERONTEMP:0ac04df7-2f9b-4c8a-bb52-f46b396e82b9 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0004746 ! prootic bone @@ -225710,16 +224366,13 @@ name: fourth phalanx def: "Fourth most proximal phalanx in manual or pedal digits." [PHENOSCAPE:alex] xref: UBERONTEMP:a8b5fbe4-0d00-4464-97ee-81ffd58a44f8 is_a: UBERON:0003221 ! phalanx -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0018323 name: hyoid articular area def: "Area on the otic capsule for the articulation of the hyoid." [PHENOSCAPE:alex] xref: UBERONTEMP:e1c1764a-61b5-4dce-8a59-7ca5a9de0a0b -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004905 ! articulation -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004637 ! otic capsule [Term] @@ -225745,7 +224398,6 @@ id: UBERON:0018326 name: ilioischiadic foramen def: "Situated just caudal to the acetabulum, the foramen is bound dorsally by the illium and ventrally by the ischium. The foramen transmitts the ischiadic nerves and vessels (Baumel et al. 1993)." [PHENOSCAPE:alex] xref: UBERONTEMP:63e09c69-ac98-49ba-b232-2da5c7b19019 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0005744 ! bone foramen intersection_of: conduit_for UBERON:0001322 ! sciatic nerve @@ -225790,7 +224442,6 @@ name: intraramal joint def: "A joint in the lower jaw that enhances kinesis and for swallowing prey. Allows enhanced mobility and intraramal bending to increase gape." [PHENOSCAPE:alex] xref: UBERONTEMP:0f283c26-49e5-42e7-8ae1-e391eda7e4ce is_a: UBERON:0002217 ! synovial joint -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] @@ -225811,7 +224462,6 @@ name: labial cartilage def: "Distinct cartilage around the jaws of elasmobranchs." [PHENOSCAPE:Nizar] xref: UBERONTEMP:dab1de8a-9ec0-4e71-b7ec-8507bcbaccad is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: only_in_taxon NCBITaxon:7778 ! Elasmobranchii relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -225822,7 +224472,6 @@ name: lateral condyle of quadrate def: "Condyle on the lateral side of the quadrate." [PHENOSCAPE:Nizar] xref: UBERONTEMP:65292031-1a72-4f0a-a385-a479e6a8625f is_a: UBERON:0009979 ! condyle -is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:0018337 {source="lexical"} ! medial condyle of quadrate relationship: part_of UBERON:0006597 ! quadrate bone @@ -225841,7 +224490,6 @@ name: maxillary shank def: "The triangular shaped posterior fold at the angle of the mouth. From Chakrabarty 2006." [PHENOSCAPE:alex] xref: UBERONTEMP:d176af29-e3f6-4cfa-a8ee-d26740652bfd is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -225850,7 +224498,6 @@ name: medial condyle of quadrate def: "The medialmost condyle on the distal region of the quadrate, in contact with the pterygoid." [PHENOSCAPE:alex] xref: UBERONTEMP:0261cdfc-5e94-4560-8b5c-488f9f2194ca is_a: UBERON:0009979 ! condyle -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006597 ! quadrate bone [Term] @@ -225858,7 +224505,6 @@ id: UBERON:0018338 name: medial cotyla def: "The medialmost of the cotyla of the lower jaw, for articulation with the cranium." [PHENOSCAPE:alex] xref: UBERONTEMP:2d15fa5d-566b-4428-83e4-753ae839a965 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200050 ! cotyla relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -225867,9 +224513,7 @@ id: UBERON:0018339 name: metotic fissure def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex] xref: UBERONTEMP:41980771-8a82-40d2-877e-3156cc80857b -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004637 ! otic capsule [Term] @@ -225885,7 +224529,6 @@ id: UBERON:0018341 name: nasal process of premaxilla def: "A bony projection of the premaxilla that extends cadually and separates the nasal bones." [PHENOSCAPE:alex] xref: UBERONTEMP:18a5dd1b-1213-471f-9a0b-06190b1ecf2c -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -225921,8 +224564,6 @@ relationship: part_of UBERON:0018345 ! stylar shelf id: UBERON:0018345 name: stylar shelf def: "The stylar shelf is an an expansion of the cingulum; it often bears small cusps (each with its own name...)." [http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure, PHENOSCAPE:curators] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0013164 ! molariform tooth @@ -225978,7 +224619,6 @@ name: quadrate condyle def: "The convex articular surface on the qudrate, part of the craniomandibular joint." [PHENOSCAPE:Alex] xref: UBERONTEMP:24ee2473-1c50-4d40-a2e9-5ddd3b2970ec is_a: UBERON:0009979 ! condyle -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0006597 ! quadrate bone intersection_of: part_of UBERON:0011171 ! joint connecting upper and lower jaws @@ -226031,9 +224671,7 @@ id: UBERON:0018359 name: subolfactory process def: "The ventral portion of the frontals which forms part of the lateral wall of the braincase. Modified from Lee and Caldwell 1998." [PHENOSCAPE:Alex] xref: UBERONTEMP:41e8ff4d-2e04-4d81-8db9-a8038e63f76b -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -226052,7 +224690,6 @@ name: suborbital shelf def: "On the neurocranium, a horizontal plate arising on the ventral junction of the orbital wall and basal plate on each side which extends from the nasal capsule to the otic capsule; it forms the floor of the orbit." [PHENOSCAPE:Wasila] comment: Definition from: LJV Compagno. 2002. Sharks of the World Volume 2; FAO Species Catalogue for Fishery Purposes No. 1 xref: UBERONTEMP:2b933bd2-0562-4624-8d49-ec5325a2da54 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: only_in_taxon NCBITaxon:119203 ! Selachii relationship: part_of UBERON:0001703 ! neurocranium @@ -226063,7 +224700,6 @@ name: supracondylar tubercle def: "Anatomical projection on the distal region of the femur or humerus and close to the condyles." [PHENOSCAPE:Nizar] comment: found on femur or humerus xref: UBERONTEMP:f721b85c-54d3-4e89-a61e-bfddacf0fe93 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0017163 ! skin bony tubercle relationship: part_of UBERON:0011583 ! stylopodial skeleton @@ -226088,7 +224724,6 @@ id: UBERON:0018365 name: supratemporal process def: "Process of the parietal." [PHENOSCAPE:Nizar] xref: UBERONTEMP:4d719e1e-df5d-4735-9490-45e6e22b549a -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000210 ! tetrapod parietal bone @@ -226156,7 +224791,6 @@ synonym: "pterygoid canal" EXACT [FMA:54756] xref: FMA:54756 xref: Pterygoid:canal xref: UBERONTEMP:1ab99cc2-1435-4a9f-ade0-4e3b8efc8774 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0018412 ! vidian nerve @@ -226169,8 +224803,6 @@ name: sallet def: "A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 ." [ISBN:9780387714691, PHENOSCAPE:Alex] xref: UBERONTEMP:caa10252-5f7e-4a55-a72c-cf7986a89363 is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8504 {source="ISBN:9780387714691"} ! Lepidosauria relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea relationship: present_in_taxon NCBITaxon:35033 {source="ISBN:9780387714691"} @@ -226338,7 +224970,6 @@ synonym: "superior posterior alveolar artery" EXACT [FMA:49757] xref: FMA:49757 xref: http://en.wikipedia.org/wiki/Posterior_superior_alveolar_artery is_a: UBERON:0001637 ! artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -226404,7 +225035,6 @@ synonym: "infraorbital foramen" EXACT [MFMO:0000054] xref: FMA:57718 xref: Infraorbital:foramen xref: MFMO:0000054 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0004646 ! infraorbital artery @@ -226450,7 +225080,6 @@ synonym: "infraorbital groove" EXACT [http://en.wikipedia.org/wiki/Infraorbital_ synonym: "sulcus infraorbitalis" RELATED [http://en.wikipedia.org/wiki/Infraorbital_groove] xref: FMA:57746 xref: Infraorbital:groove -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone intersection_of: UBERON:4200230 ! surface of bone intersection_of: conduit_for UBERON:0004646 ! infraorbital artery @@ -226534,7 +225163,6 @@ synonym: "ethmoidal foramen" EXACT [] synonym: "ethmoidal foramina" RELATED PLURAL [] synonym: "foramina ethmoidalia" EXACT LATIN [] xref: Ethmoidal:foramina -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0001679 ! ethmoid bone @@ -226561,7 +225189,6 @@ synonym: "nasal foramen" EXACT [] synonym: "nasal foramina" RELATED PLURAL [FMA:57653] xref: FMA:57653 xref: Nasal:foramina -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: part_of UBERON:0001681 ! nasal bone @@ -226716,7 +225343,6 @@ def: "The region of the mandible on or near the midline (near the mandiblular sy synonym: "symphyseal region" BROAD [MFMO:0000147] xref: MFMO:0000147 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004742 ! dentary [Term] @@ -226730,7 +225356,6 @@ xref: FMA:14586 xref: TADS:0000495 xref: WBbt:0005791 xref: ZFA:0005807 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000160 ! intestine @@ -226779,7 +225404,6 @@ xref: EFO:0003699 xref: TAO:0005028 xref: ZFA:0005028 is_a: UBERON:0000479 {source="ZFA"} ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002390 {source="ZFA"} ! hematopoietic system relationship: part_of UBERON:0005805 {source="ZFA"} ! dorsal aorta @@ -227610,9 +226234,6 @@ name: recessus basilaris def: "An opening of the otic duct within the inner ear. The recessus basilaris can open to the saccule (in frogs) or the lagena (in salamanders and caecilians). The sensory epithelium of the recessus basilaris is the basilar papilla (or papilla basilaris). Reference: Lewis, E.R. and R.E. Lombard. 1988. The amphibian inner ear. Pp. 93-123 in Fritszch, B., et al. (eds.), The Evolution of the Amphibian Auditory System. Wiley & Sons. [curated by D. Blackburn]." [PHENOSCAPE:wd] synonym: "basilar papillar recess" EXACT [] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -227653,7 +226274,6 @@ synonym: "fibula neck" EXACT [FMA:35508] synonym: "fibular neck" EXACT [] xref: EMAPA:37891 {source="MA:th"} xref: FMA:35508 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -227667,7 +226287,6 @@ def: "An interconnected tubular multi-tissue structure that contains fluid that synonym: "cardiac vasculature" EXACT [FMA:73747] xref: FMA:73747 xref: ZFA:0005811 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -227771,7 +226390,6 @@ def: "The meshwork of astrocytic foot processes (glial end feet) covered by a ba synonym: "glia limitans" EXACT LATIN [http://en.wikipedia.org/wiki/Glia_limitans] xref: Glia:limitans xref: NIF_Subcellular:nlx_subcell_100209 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: has_part GO:0097450 ! astrocyte end-foot relationship: immediately_deep_to UBERON:0002361 ! pia mater @@ -227884,7 +226502,6 @@ xref: BTO:0004638 xref: FMA:13119 xref: http://www.snomedbrowser.com/Codes/Details/88410004 is_a: UBERON:0000414 ! mucous gland -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland @@ -228080,7 +226697,6 @@ synonym: "lens zone" EXACT [FMA:58067] synonym: "zone of lens" RELATED [FMA:58067] xref: FMA:58067 xref: http://www.snomedbrowser.com/Codes/Details/280630009 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0000965 ! lens of camera-type eye @@ -228089,7 +226705,6 @@ id: UBERON:0019211 name: supcapsular region of anterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001804 ! capsule of lens relationship: part_of UBERON:0019208 ! anterior pole of lens @@ -228098,7 +226713,6 @@ id: UBERON:0019212 name: supcapsular region of posterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001804 ! capsule of lens relationship: part_of UBERON:0016459 ! posterior pole of lens @@ -228185,7 +226799,6 @@ id: UBERON:0019243 name: skin crease synonym: "skin groove" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/280385004 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove is_a: UBERON:3000961 ! external integument structure relationship: has_quality PATO:0002255 ! grooved @@ -228415,7 +227028,7 @@ xref: HBA:9284 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1444 xref: NLX:98733 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +relationship: part_of UBERON:0003044 ! uncinate fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon [Term] @@ -228425,7 +227038,6 @@ xref: BIRNLEX:1447 xref: DHBA:12130 xref: HBA:4900 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus [Term] @@ -228436,7 +227048,6 @@ xref: BIRNLEX:1311 xref: DHBA:12129 xref: HBA:4897 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus [Term] @@ -228589,7 +227200,6 @@ id: UBERON:0019306 name: nose epithelium xref: EMAPA:35958 xref: MA:0003171 -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000004 ! nose @@ -228669,7 +227279,6 @@ id: UBERON:0019315 name: meibum def: "An oily substance that prevents evaporation of the eye's tear film." [http://www.ncbi.nlm.nih.gov/pubmed/20664693] synonym: "tarsal gland secretion" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001866 ! sebum intersection_of: UBERON:0001866 ! sebum intersection_of: produced_by UBERON:0001818 ! tarsal gland @@ -228710,7 +227319,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1882706 xref: MA:0003109 xref: NCIT:C60574 is_a: UBERON:0001817 {source="MA"} ! lacrimal gland -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0019325 @@ -228725,7 +227333,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1882664 xref: MA:0003110 xref: NCIT:C60564 is_a: UBERON:0001817 {source="MA"} ! lacrimal gland -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens [Term] id: UBERON:0019326 @@ -228812,7 +227419,6 @@ xref: MA:0000920 xref: MBA:822 is_a: UBERON:0000481 {source="ABA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] @@ -228820,7 +227426,6 @@ id: UBERON:0022232 name: secondary visual cortex xref: EMAPA:35758 xref: MA:0000915 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: part_of UBERON:0000411 {source="cjm"} ! visual cortex relationship: part_of UBERON:0002021 {source="MA"} ! occipital lobe @@ -229146,7 +227751,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2333 xref: Planum:temporale is_a: UBERON:0000481 {source="HBA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe relationship: source_atlas Harvard-Oxford:Atlas @@ -229207,7 +227811,6 @@ xref: FMA:59402 xref: http://www.snomedbrowser.com/Codes/Details/368792002 xref: Lacrimal:lake is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001811 ! conjunctiva [Term] @@ -229219,7 +227822,6 @@ xref: FMA:59407 xref: http://www.snomedbrowser.com/Codes/Details/362533003 xref: Lacrimal:papilla is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] @@ -229229,7 +227831,6 @@ def: "A sharp bend between consecutive segments of the colon." [http://orcid.org synonym: "flexura coli" EXACT [FMA:14555] xref: FMA:14555 xref: http://www.snomedbrowser.com/Codes/Details/245426004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001155 ! colon @@ -229247,6 +227848,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227387 xref: http://www.snomedbrowser.com/Codes/Details/245428003 xref: NCIT:C12267 xref: Splenic:flexure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0022275 ! colic flexure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -229264,6 +227866,7 @@ xref: Hepatic:flexure xref: http://linkedlifedata.com/resource/umls/id/C0227385 xref: http://www.snomedbrowser.com/Codes/Details/245427008 xref: NCIT:C12266 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0022275 ! colic flexure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -229350,7 +227953,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=456 xref: http://www.snomedbrowser.com/Codes/Details/280070003 xref: http://www.snomedbrowser.com/Codes/Details/369281005 xref: Pineal:recess -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002286 ! third ventricle @@ -229389,7 +227991,6 @@ id: UBERON:0022287 name: tear film def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165] synonym: "precorneal film" EXACT [MGI:anna] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid relationship: composed_primarily_of UBERON:0001827 {notes="primarily aqueous layer"} ! secretion of lacrimal gland @@ -229403,7 +228004,6 @@ id: UBERON:0022288 name: surface of eyeball synonym: "surface of region of wall of eyeball" RELATED [FMA:58315] xref: FMA:58315 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0010230 ! eyeball of camera-type eye @@ -229571,7 +228171,6 @@ subset: cumbo synonym: "lamina" BROAD [CUMBO:CUMBO] synonym: "layer" BROAD [CUMBO:CUMBO] xref: NLX:149357 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: has_quality PATO:0002124 ! laminar @@ -229780,6 +228379,7 @@ synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "layer II of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "outermost cell layer of entorhinal cortex" RELATED [https://doi.org/10.1155/2008/381243] xref: NLXANAT:090821 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer @@ -229899,7 +228499,6 @@ synonym: "medial orbitofrontal cortex" EXACT [http://orcid.org/0000-0002-6601-21 xref: BIRNLEX:1249 xref: FMA:273320 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022716 {source="lexical"} ! lateral orbital frontal cortex relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex @@ -229916,7 +228515,6 @@ xref: EFO:0002471 xref: FMA:271593 xref: Posterior:cingulate is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0003027 {source="NIFSTD"} ! cingulate cortex @@ -229985,7 +228583,7 @@ name: lung field def: "A specific region of the foregut into the area in which the lung will develop." [GOC:dph, GOC:mtg_lung] synonym: "lung field" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/34922002 -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007688 ! anlage intersection_of: UBERON:0007688 ! anlage intersection_of: has_potential_to_develop_into UBERON:0002048 ! lung @@ -230002,7 +228600,6 @@ xref: DHBA:12152 xref: FMA:71033 xref: http://neuro.imm.dtu.dk/wiki/Occipital_fusiform_gyrus is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -230013,7 +228610,6 @@ synonym: "lateral occipital cortex, inferior division" EXACT [https://github.com synonym: "lateral occipital cortex, inferior division (OLI)" EXACT [FMA:71034] xref: FMA:71034 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006114 ! lateral occipital cortex relationship: source_atlas Harvard-Oxford:Atlas @@ -230023,7 +228619,6 @@ name: superior lateral occipital cortex synonym: "lateral occipital cortex, superior division" EXACT [https://github.com/obophenotype/uberon/issues/630] xref: FMA:71035 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006114 ! lateral occipital cortex relationship: source_atlas Harvard-Oxford:Atlas @@ -230036,7 +228631,6 @@ synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000 xref: DHBA:12163 xref: FMA:71039 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002973 ! parahippocampal gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -230059,7 +228653,6 @@ synonym: "FuGt" RELATED ABBREVIATION [DHBA:12143] synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] xref: DHBA:12143 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -230068,7 +228661,6 @@ id: UBERON:0022396 name: anterior temporal fusiform gyrus synonym: "occipitotemporal (fusiform) gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022397 {source="lexical"} ! posterior temporal fusiform gyrus relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -230078,7 +228670,6 @@ id: UBERON:0022397 name: posterior temporal fusiform gyrus synonym: "occipitotemporal (fusiform) gyrus, posterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -230090,7 +228681,6 @@ synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] xref: DHBA:146034872 xref: FMA:71037 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe @@ -230158,7 +228748,6 @@ synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] synonym: "cor-a" RELATED ABBREVIATION [DHBA:15541] xref: DHBA:15541 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022427 {source="lexical"} ! posterior corona radiata relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html @@ -230170,7 +228759,6 @@ synonym: "cor-s" RELATED ABBREVIATION [DHBA:15542] synonym: "superior portion of corona radiata" EXACT [DHBA:15542] xref: DHBA:15542 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html @@ -230181,7 +228769,6 @@ synonym: "cor-p" RELATED ABBREVIATION [DHBA:15543] synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] xref: DHBA:15543 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html @@ -230272,7 +228859,6 @@ synonym: "rostral anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:975] xref: BIRNLEX:975 xref: FMA:271599 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cortex [Term] @@ -230283,7 +228869,6 @@ synonym: "EOl" RELATED ABBREVIATION [BIRNLEX:2705] xref: BIRNLEX:2705 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2274 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002728 {source="NIFSTD"} ! entorhinal cortex relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex @@ -230294,7 +228879,6 @@ def: "A group of structures defined by connectivity, namely, structures that rec synonym: "primary olfactory areas" RELATED [BIRNLEX:2706] xref: BIRNLEX:2706 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex [Term] @@ -230319,7 +228903,6 @@ synonym: "pericalcarine cortex" EXACT [BIRNLEX:1059] synonym: "pericalcarine cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1059] xref: BIRNLEX:1059 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe [Term] @@ -230427,7 +229010,6 @@ synonym: "orgital_gyri" RELATED [BIRNLEX:1223] xref: BIRNLEX:1223 xref: http://linkedlifedata.com/resource/umls/id/C0152301 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] @@ -230446,7 +229028,6 @@ synonym: "lateral orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1244] synonym: "lateral orbital frontal cortex" EXACT [BIRNLEX:1244] xref: BIRNLEX:1244 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] @@ -230457,7 +229038,6 @@ synonym: "transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:12 synonym: "transverse frontopolar gyri complex" EXACT [BIRNLEX:1258] xref: BIRNLEX:1258 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] @@ -230506,7 +229086,6 @@ name: composite part spanning multiple base regional parts of brain synonym: "composite part spanning multiple base regional parts of brain" EXACT HUMAN_PREFERRED [BIRNLEX:1304] synonym: "composite part spanning multiple base regional parts of brain" EXACT [BIRNLEX:1304] xref: BIRNLEX:1304 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034925 ! anatomical collection relationship: part_of UBERON:0000955 ! brain @@ -230878,7 +229457,6 @@ synonym: "superficial feature part of occipital lobe" EXACT [BIRNLEX:4024] synonym: "superficial feature part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4024] xref: BIRNLEX:4024 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -231085,7 +229663,6 @@ xref: BIRNLEX:944 xref: FMA:275157 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2027 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation @@ -231144,7 +229721,6 @@ synonym: "gross anatomical parts of the cerebellum" EXACT HUMAN_PREFERRED [BIRNL synonym: "gross anatomical parts of the cerebellum" EXACT [BIRNLEX:996] xref: BIRNLEX:996 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -231154,7 +229730,6 @@ def: "An area of the brain that locates at the interception of temporal and pari synonym: "temporoparietal junction" EXACT [NLX:144255] xref: NLX:144255 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex @@ -231185,7 +229760,6 @@ xref: HBA:4177 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2020 xref: NLX:144291 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus @@ -231215,7 +229789,6 @@ synonym: "islands of calleja of olfactory tubercle" EXACT [NLX:50741] synonym: "islets of calleja" RELATED [NLX:50741] xref: NLX:50741 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja relationship: part_of UBERON:0001883 {source="NIFSTD"} ! olfactory tubercle @@ -231233,7 +229806,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2273 xref: MBA:489 xref: NLX:55138 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja @@ -231253,7 +229825,6 @@ name: neural system def: "A set of neural structures that subserve a specific function, e.g., visual system." [NLXANAT:090802] synonym: "neural system" EXACT [NLXANAT:090802] xref: NLXANAT:090802 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system @@ -231310,7 +229881,6 @@ synonym: "postrhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005 synonym: "rodent postrhinal cortex" RELATED [NLXANAT:1005005] xref: NLXANAT:1005005 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -231321,7 +229891,6 @@ synonym: "sommer's sector" EXACT [NLXANAT:1005009] synonym: "sommers sector" RELATED [NLXANAT:1005009] xref: NLXANAT:1005009 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 ! hippocampal formation [Term] @@ -231399,7 +229968,6 @@ def: "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg synonym: "bed nuclei of the stria terminalis oval nucleus" EXACT [NLXANAT:1005035] xref: NLXANAT:1005035 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] @@ -231518,7 +230086,6 @@ synonym: "rostral portion of the medial accessory olive" EXACT [NLXANAT:20081247 synonym: "rostral portion of the medial accessory olive" EXACT HUMAN_PREFERRED [NLXANAT:20081247] xref: NLXANAT:20081247 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex @@ -231541,7 +230108,6 @@ synonym: "superficial feature part of the cerebellum" EXACT HUMAN_PREFERRED [NLX synonym: "superficial feature part of the cerebellum" EXACT [NLXANAT:20081250] xref: NLXANAT:20081250 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -231609,7 +230175,6 @@ synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704] xref: http://en.wikipedia.org/wiki/Basilar_part_of_pons xref: NLXANAT:20090704 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons @@ -231671,7 +230236,6 @@ xref: BIRNLEX:1064 xref: FMA:274414 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=842 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex @@ -231683,7 +230247,6 @@ synonym: "medial transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:10 xref: BIRNLEX:1074 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=823 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex @@ -231696,7 +230259,6 @@ xref: BIRNLEX:1082 xref: FMA:274408 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex @@ -232037,7 +230599,6 @@ synonym: "circuit part of central nervous system" EXACT [BIRNLEX:2513] synonym: "circuit part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2513] xref: BIRNLEX:2513 is_a: UBERON:0000073 ! regional part of nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] @@ -232442,7 +231003,6 @@ id: UBERON:0025736 name: chemoarchitectural part of striatum synonym: "chemoarchitectural part of neostriatum" EXACT [NLXANAT:20090502] xref: NLXANAT:20090502 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0024090 ! chemoarchitectural part of brain intersection_of: UBERON:0024090 ! chemoarchitectural part of brain intersection_of: part_of UBERON:0002435 ! striatum @@ -233097,7 +231657,6 @@ synonym: "Hadjikhani visuotopic parcellation scheme" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic partition scheme" RELATED [BIRNLEX:4052] xref: BIRNLEX:4052 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -233108,7 +231667,6 @@ synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT [BIRNLEX:4062] synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT HUMAN_PREFERRED [BIRNLEX:4062] xref: BIRNLEX:4062 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -233118,7 +231676,6 @@ synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT [BIRNLEX:4063] xref: BIRNLEX:4063 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -233131,7 +231688,6 @@ synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme re synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme region" EXACT [BIRNLEX:4064] xref: BIRNLEX:4064 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 ! frontal lobe [Term] @@ -233204,7 +231760,6 @@ synonym: "isthmus of cingulate cortex" EXACT [BIRNLEX:943] synonym: "isthmus of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:943] xref: BIRNLEX:943 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003027 ! cingulate cortex [Term] @@ -233249,7 +231804,6 @@ xref: BIRNLEX:994 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=400 xref: http://linkedlifedata.com/resource/umls/id/C0262266 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000007 {source="NIFSTD"} ! pituitary gland [Term] @@ -233461,7 +232015,6 @@ name: posterior superior frontal sulcus synonym: "posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1130] synonym: "posterior superior frontal sulcus" EXACT [BIRNLEX:1130] xref: BIRNLEX:1130 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0027716 {source="lexical"} ! anterior superior frontal sulcus relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus @@ -233555,7 +232108,6 @@ synonym: "polar notch" RELATED [NeuroNames:838] synonym: "sulcus frontalis superior anterior" RELATED LATIN [NeuroNames:838] xref: BIRNLEX:1338 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=838 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus @@ -233688,8 +232240,6 @@ xref: FMA:77833 xref: http://www.snomedbrowser.com/Codes/Details/279843007 xref: MA:0003003 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] @@ -233745,7 +232295,6 @@ name: calcarine sulcus (dorsal) synonym: "calcarine sulcus (dorsal)" EXACT HUMAN_PREFERRED [BIRNLEX:4050] synonym: "calcarine sulcus (dorsal)" EXACT [BIRNLEX:4050] xref: BIRNLEX:4050 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002586 ! calcarine sulcus @@ -233755,7 +232304,6 @@ name: calcarine sulcus (ventral) synonym: "calcarine sulcus (ventral)" EXACT [BIRNLEX:4051] synonym: "calcarine sulcus (ventral)" EXACT HUMAN_PREFERRED [BIRNLEX:4051] xref: BIRNLEX:4051 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002586 ! calcarine sulcus @@ -234080,7 +232628,6 @@ def: "Component of the temporal lobe, lateral aspect. The rostral boundary is th synonym: "banks of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:862] synonym: "banks of superior temporal sulcus" EXACT [BIRNLEX:862] xref: BIRNLEX:862 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002734 ! superior temporal sulcus @@ -234092,7 +232639,6 @@ synonym: "caudal anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:967] synonym: "caudal anterior cingulate cortex" EXACT [BIRNLEX:967] xref: BIRNLEX:967 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0009835 ! anterior cingulate cortex [Term] @@ -234421,7 +232967,6 @@ synonym: "cytoarchitecture of entorhinal cortex" EXACT HUMAN_PREFERRED [NLXANAT: synonym: "cytoarchitecture of entorhinal cortex" EXACT [NLXANAT:20090703] xref: NLXANAT:20090703 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002728 ! entorhinal cortex [Term] @@ -234528,7 +233073,6 @@ id: UBERON:0034670 name: palatal taste bud def: "A taste bud that is located on the soft palate, in the roof of the mouth." [http://orcid.org/0000-0002-6601-2165, https://doi.org/10.1523/JNEUROSCI.5142-05.2006] synonym: "taste bud of palate" EXACT [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0034722 ! mouth roof taste bud intersection_of: UBERON:0001727 ! taste bud @@ -234560,8 +233104,6 @@ synonym: "vestibular area" BROAD [FMA:78478] xref: FMA:78478 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=623 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002422 ! fourth ventricle [Term] @@ -234668,8 +233210,6 @@ synonym: "Adams apple" EXACT [] xref: BTO:0003656 xref: FMA:55304 xref: http://www.snomedbrowser.com/Codes/Details/362648003 -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0001738 ! thyroid cartilage @@ -234707,7 +233247,6 @@ synonym: "infundibuliform fascia" RELATED [http://en.wikipedia.org/wiki/Internal xref: FMA:77299 xref: http://en.wikipedia.org/wiki/Internal_spermatic_fascia xref: http://www.snomedbrowser.com/Codes/Details/279586003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034688 ! spermatic fascia relationship: part_of UBERON:0001300 ! scrotum @@ -234731,7 +233270,6 @@ name: gubernacular bulb, intra-abdominal part def: "The portion of the gubernacular bulb that is located within the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] synonym: "gubernacular cone" RELATED [ISBN:0123971756] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0012326 ! gubernacular bulb @@ -234740,7 +233278,6 @@ id: UBERON:0034695 name: gubernacular bulb, extra-abdominal part def: "The portion of the gubernacular bulb that is located external to the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0012326 ! gubernacular bulb @@ -234763,7 +233300,6 @@ synonym: "heart inflow tract" EXACT [] synonym: "venous pole" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/20735616] xref: FMA:14057 is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: channel_for UBERON:0000178 ! blood relationship: channels_from UBERON:0001637 ! artery relationship: channels_into UBERON:0000948 ! heart @@ -234820,7 +233356,6 @@ xref: AEO:0001008 xref: BTO:0000314 xref: EHDAA2_RETIRED:0004654 xref: FMA:64807 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0001016 ! nervous system @@ -234971,8 +233506,8 @@ relationship: part_of UBERON:2000622 ! barbel id: UBERON:0034719 name: lip taste bud def: "A taste bud that is located on a lip." [http://orcid.org/0000-0002-6601-2165, http://www.ncbi.nlm.nih.gov/pubmed/11921337] +is_a: UBERON:0001727 ! taste bud is_a: UBERON:0013765 ! digestive system element -is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: part_of UBERON:0001833 ! lip relationship: part_of UBERON:0001833 ! lip @@ -234982,7 +233517,6 @@ relationship: present_in_taxon NCBITaxon:32443 ! Teleostei id: UBERON:0034720 name: head taste bud def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: part_of UBERON:0001084 ! skin of head @@ -235052,7 +233586,6 @@ relationship: part_of UBERON:0000377 ! maxillary nerve id: UBERON:0034726 name: trunk taste bud def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud @@ -235238,7 +233771,6 @@ xref: FMA:61957 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=203 xref: http://www.snomedbrowser.com/Codes/Details/362363008 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0014527 {source="DHBA", source="FMA"} ! posterior limb of internal capsule [Term] @@ -235248,7 +233780,6 @@ def: "Part of cortex considered to function in higher level visual functions." [ synonym: "visual association area" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] synonym: "visual association cortex" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] xref: NLX:143553 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035015 ! association cortex intersection_of: UBERON:0035015 ! association cortex intersection_of: part_of UBERON:0000411 ! visual cortex @@ -235269,7 +233800,6 @@ xref: FMA:272953 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1354 xref: http://en.wikipedia.org/wiki/Primary_auditory_cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] @@ -235288,7 +233818,6 @@ xref: DHBA:10239 xref: FMA:272944 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1557 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex @@ -235370,8 +233899,8 @@ name: glabella region def: "A region of the forehead corresponding to the space between the eyebrows and above the nose." [http://en.wikipedia.org/wiki/Glabella, http://orcid.org/0000-0002-6601-2165] synonym: "glabella" NARROW [] xref: http://en.wikipedia.org/wiki/Glabella +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001444 ! subdivision of head -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0016440 ! glabella region of bone relationship: has_part UBERON:0034765 ! glabella skin relationship: part_of UBERON:0008200 ! forehead @@ -235379,10 +233908,9 @@ relationship: part_of UBERON:0008200 ! forehead [Term] id: UBERON:0034767 name: buccal vestibule -def: "The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. PPP The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. PPP When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. PPP Several salivary ducts open into the dorso caudal part of the vestibule: PPP Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth PPP Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix PPP Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule." [MURDOCH:240] +def: "The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. Several salivary ducts open into the dorso caudal part of the vestibule: Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth. Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix. Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule." [MURDOCH:240] xref: FMA:289320 xref: MURDOCH:240 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0001833 ! lip relationship: adjacent_to UBERON:0006956 ! buccal mucosa @@ -235438,7 +233966,6 @@ synonym: "free margin of eyelid" EXACT [] xref: EMAPA:37905 {source="MA:th"} xref: FMA:59356 xref: http://www.snomedbrowser.com/Codes/Details/362527007 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001711 ! eyelid @@ -235456,7 +233983,6 @@ xref: http://en.wikipedia.org/wiki/Uncus xref: http://www.snomedbrowser.com/Codes/Details/279213004 xref: NCIT:C33831 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002973 {source="DHBA"} ! parahippocampal gyrus [Term] @@ -235465,7 +233991,6 @@ name: uncal CA1 synonym: "CA1U" RELATED ABBREVIATION [DHBA:266441267] xref: DHBA:266441267 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] @@ -235474,7 +233999,6 @@ name: uncal CA2 synonym: "CA2U" RELATED ABBREVIATION [DHBA:266441311] xref: DHBA:266441311 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] @@ -235483,7 +234007,6 @@ name: uncal CA3 synonym: "CA3U" RELATED ABBREVIATION [DHBA:266441355] xref: DHBA:266441355 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] @@ -235492,7 +234015,6 @@ name: rostral CA1 synonym: "CA1R" RELATED ABBREVIATION [DHBA:11275] xref: DHBA:11275 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] @@ -235501,7 +234023,6 @@ name: rostral CA2 synonym: "CA2R" RELATED ABBREVIATION [DHBA:11285] xref: DHBA:11285 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] @@ -235510,7 +234031,6 @@ name: rostral CA3 synonym: "CA3R" RELATED ABBREVIATION [DHBA:11295] xref: DHBA:11295 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] @@ -235519,7 +234039,6 @@ name: caudal CA1 synonym: "CA1C" RELATED ABBREVIATION [DHBA:11280] xref: DHBA:11280 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] @@ -235528,7 +234047,6 @@ name: caudal CA2 synonym: "CA2C" RELATED ABBREVIATION [DHBA:11290] xref: DHBA:11290 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] @@ -235537,7 +234055,6 @@ name: caudal CA3 synonym: "CA3C" RELATED ABBREVIATION [DHBA:11301] xref: DHBA:11301 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] @@ -236122,7 +234639,6 @@ synonym: "PoPC" RELATED ABBREVIATION [DHBA:10214] xref: DHBA:10214 xref: http://en.wikipedia.org/wiki/Posterior_parietal_cortex is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016530 {source="DHBA"} ! parietal cortex [Term] @@ -236161,7 +234677,6 @@ xref: BTO:0004341 xref: DHBA:10290 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1192 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034891 ! insular cortex [Term] @@ -236180,7 +234695,6 @@ xref: DHBA:10289 xref: DHBA:10328 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1780 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034891 ! insular cortex [Term] @@ -236242,7 +234756,6 @@ name: palatine process of premaxilla def: "Lingual ledge on the inner surface of the premaxilla." [AAO:0000414, AAO:LAP] synonym: "pars palatina of premaxilla" EXACT [AAO:0000414] xref: AAO:0000414 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla relationship: part_of UBERON:0012074 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! bony part of hard palate @@ -236413,6 +234926,7 @@ id: UBERON:0034923 name: disconnected anatomical group def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000] xref: CARO:0020000 +xref: FBbt:00007276 is_a: UBERON:0000465 {source="CARO"} ! material anatomical entity relationship: composed_primarily_of UBERON:0000061 ! anatomical structure relationship: has_component UBERON:0000061 {minCardinality="2"} ! anatomical structure @@ -236460,7 +234974,6 @@ name: dorsal surface of penis synonym: "dorsum of penis" EXACT [FMA:19623] synonym: "dorsum penis" EXACT [FMA:TA] xref: FMA:19623 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: in_dorsal_side_of UBERON:0000989 ! penis @@ -236558,7 +235071,6 @@ synonym: "corona ciliaris" EXACT [FMA:58431] xref: FMA:58431 xref: http://www.snomedbrowser.com/Codes/Details/280859006 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] @@ -236571,7 +235083,6 @@ xref: FMA:58480 xref: http://www.snomedbrowser.com/Codes/Details/368830002 xref: NCIT:C33219 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] @@ -236579,10 +235090,8 @@ id: UBERON:0034937 name: pharyngeal bar synonym: "branchial bar" RELATED [] synonym: "gill bar" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0013765 ! digestive system element -relationship: never_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: only_in_taxon NCBITaxon:33511 ! Deuterostomia relationship: part_of UBERON:0001042 ! chordate pharynx relationship: present_in_taxon NCBITaxon:117569 ! Hyperoartia @@ -236646,6 +235155,7 @@ id: UBERON:0034942 name: vibrissal follicle-sinus complex def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [http://www.ncbi.nlm.nih.gov/pubmed/16342212] synonym: "F-SC" RELATED ABBREVIATION [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012451 ! sensory receptor relationship: has_part UBERON:0010419 ! vibrissa follicle relationship: has_part UBERON:0034941 ! blood sinus of vibrissa @@ -236660,7 +235170,6 @@ property_value: dc-contributor https://github.com/cerivs property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/michaelerice relationship: has_part CL:0010015 ! coronet cell -relationship: never_in_taxon NCBITaxon:32523 ! Tetrapoda relationship: only_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: part_of UBERON:0001898 ! hypothalamus relationship: present_in_taxon NCBITaxon:8022 {source="http://www.ncbi.nlm.nih.gov/pubmed/4115676"} @@ -236872,7 +235381,6 @@ synonym: "Zuckerkandl's body" RELATED [http://en.wikipedia.org/wiki/Aortic_body] xref: Aortic:body xref: http://www.snomedbrowser.com/Codes/Details/75061007 xref: NCIT:C97112 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: composed_primarily_of CL:0000197 ! sensory receptor cell @@ -236891,7 +235399,6 @@ xref: FMA:50848 xref: http://www.snomedbrowser.com/Codes/Details/181381004 xref: http://www.snomedbrowser.com/Codes/Details/80595007 xref: MESH:A08.800.550.700.120.600.350 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: part_of UBERON:0034980 {source="cjm"} ! jugular bulb @@ -236920,7 +235427,6 @@ relationship: capable_of GO:0009593 ! detection of chemical stimulus id: UBERON:0034980 name: jugular bulb synonym: "bulb of jugular vein" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001586 {source="FMA"} ! internal jugular vein @@ -237024,7 +235530,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1971 xref: MA:0002918 xref: PBA:10140 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] @@ -237069,7 +235574,6 @@ name: jaw mesenchyme def: "Mesenchyme that is part of a developing jaw [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:32907 xref: EMAPA:35454 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0011595 ! jaw region @@ -237133,7 +235637,6 @@ relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucl id: UBERON:0035004 name: preputial swelling xref: EMAPA:35702 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005876 {source="EMAPA"} ! undifferentiated genital tubercle @@ -237204,7 +235707,6 @@ xref: EMAPA:35852 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1821 xref: MA:0000943 xref: MBA:541 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035015 ! association cortex intersection_of: UBERON:0035015 ! association cortex intersection_of: part_of UBERON:0016538 ! temporal cortex @@ -237333,7 +235835,6 @@ name: amygdalohippocampal transition area synonym: "AHTA" RELATED ABBREVIATION [DHBA:10380] xref: DHBA:10380 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] @@ -237343,7 +235844,6 @@ synonym: "AHiAm" RELATED ABBREVIATION [HBA:265504452] xref: HBA:265504452 xref: PBA:10136 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] @@ -237353,7 +235853,6 @@ synonym: "AHiAp" RELATED ABBREVIATION [HBA:265504456] xref: HBA:265504456 xref: PBA:10137 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] @@ -237406,7 +235905,6 @@ synonym: "carpal canal" EXACT [FMA:42352] synonym: "carpel tunnel" RELATED [http://en.wikipedia.org/wiki/Carpal_tunnel] xref: Carpal:tunnel xref: FMA:42352 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0001148 ! median nerve @@ -237455,7 +235953,6 @@ xref: FMA:49742 xref: http://en.wikipedia.org/wiki/Deep_temporal_arteries xref: http://www.snomedbrowser.com/Codes/Details/147965009 is_a: UBERON:0001632 ! temporal artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001632 ! temporal artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery @@ -237472,7 +235969,6 @@ xref: http://en.wikipedia.org/wiki/Middle_temporal_artery xref: http://www.snomedbrowser.com/Codes/Details/146854006 is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery relationship: connected_to UBERON:0001627 {subset="human_reference_atlas"} ! middle cerebral artery relationship: part_of UBERON:0001614 ! superficial temporal artery @@ -237485,7 +235981,6 @@ synonym: "temporal artery" BROAD [AAO:0010495] xref: AAO:0010495 is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014770 ! palpebral artery relationship: branching_part_of UBERON:3010494 ! lateral pretrosal artery relationship: part_of UBERON:3010494 ! lateral pretrosal artery @@ -237508,7 +236003,6 @@ id: UBERON:0035045 name: parotid gland intralobular duct def: "Any of the tubular canals of the parotid gland located within the parenchymal (secretory) tissue i.e. within lobules; both intercalated and striated (secretory) ducts are intralobular ducts." [MP:0013746] is_a: UBERON:0001837 ! duct of salivary gland -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014719 ! intralobular duct intersection_of: UBERON:0014719 ! intralobular duct intersection_of: part_of UBERON:0001831 ! parotid gland @@ -237538,7 +236032,6 @@ relationship: part_of UBERON:0001831 ! parotid gland id: UBERON:0035048 name: parotid gland excretory duct def: "Any of the interlobular excretory ducts of the parotid gland which are found in the connective tissue septa and formed by the union of several intralobular striated (secretory) ducts; ultimately, the excretory ducts of the parotid gland coalesce and form a single main excretory duct (Stensen's duct) that opens into the oral cavity; excretory ducts do not change the secretory product." [MP:0013750] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035049 ! excretory duct of salivary gland intersection_of: UBERON:0035050 ! excretory duct intersection_of: part_of UBERON:0001831 ! parotid gland @@ -237576,7 +236069,6 @@ name: duct of eccrine sweat gland synonym: "ductal part of eccrine sweat gland" EXACT [FMA:70617] xref: FMA:70617 is_a: UBERON:0000058 ! duct -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000423 ! eccrine sweat gland relationship: part_of UBERON:0000423 ! eccrine sweat gland @@ -237587,7 +236079,6 @@ name: duct of apocrine sweat gland synonym: "ductal part of apocrine sweat gland" EXACT [FMA:70643] xref: FMA:70643 is_a: UBERON:0000058 ! duct -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000382 ! apocrine sweat gland relationship: part_of UBERON:0000382 ! apocrine sweat gland @@ -237598,7 +236089,6 @@ name: thymus subunit synonym: "lobe or lobule of thymus" RELATED [] xref: FMA:71193 is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000063 ! organ subunit intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -237726,7 +236216,6 @@ id: UBERON:0035088 name: vertebral fracture plane def: "A plane of autotomy that divides an appendage through a vertebral bone." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] synonym: "plane of autotomy bisecting vertebral bone" EXACT [http://orcid.org/0000-0002-6601-2165] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0035087 ! fracture plane [Term] @@ -237739,7 +236228,6 @@ is_a: UBERON:0035086 ! plane of autotomy id: UBERON:0035090 name: plane of autotomy bisecting intervertebral joint def: "A plane of autotomy that divides an appendage in the space between vertebrae." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0035089 ! plane of autotomy bisecting joint [Term] @@ -237761,7 +236249,6 @@ is_a: UBERON:0003897 ! axial muscle is_a: UBERON:0035091 {source="http://www.ncbi.nlm.nih.gov/pubmed/22753107"} ! extrinsic post-anal tail muscle relationship: has_muscle_insertion UBERON:0003861 ! neural arch relationship: has_muscle_origin UBERON:0001076 ! neural spine -relationship: never_in_taxon NCBITaxon:9606 {source="cjm"} ! Homo sapiens relationship: part_of UBERON:0006071 ! caudal region relationship: present_in_taxon NCBITaxon:28376 @@ -237884,7 +236371,6 @@ name: raphe of penis synonym: "penile raphe" EXACT [FMA:19646] synonym: "raphe penis" EXACT LATIN [FMA:19646, FMA:TA] xref: FMA:19646 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone intersection_of: UBERON:0034929 ! external soft tissue zone @@ -237904,7 +236390,6 @@ synonym: "scrotal sac" EXACT [FMA:18251] synonym: "testis comartment" EXACT [] xref: FMA:18251 is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: has_component UBERON:0000473 {minCardinality="1", maxCardinality="1"} ! testis relationship: part_of UBERON:0001300 ! scrotum @@ -238089,7 +236574,6 @@ def: "Lateral walls of the oropharynx that are located medial to the palatogloss xref: FMA:55019 xref: http://www.snomedbrowser.com/Codes/Details/361362001 is_a: UBERON:0000328 ! gut wall -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001729 ! oropharynx [Term] @@ -238100,7 +236584,6 @@ synonym: "incisive suture" RELATED [FMA:75777] synonym: "midline of hard palate" RELATED [] xref: FMA:75777 xref: http://www.snomedbrowser.com/Codes/Details/245781007 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4200215 ! suture relationship: intersects_midsagittal_plane_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -238112,7 +236595,6 @@ def: "Line of union, in the floor of the orbit, between the orbital process of t synonym: "palatomaxillary suture of skull" EXACT [FMA:52964] xref: FMA:52964 xref: Palatomaxillary:suture -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4200215 ! suture intersection_of: UBERON:4200215 ! suture intersection_of: connects UBERON:0001682 ! palatine bone @@ -238143,7 +236625,6 @@ name: transverse palatine suture def: "The line of junction between the processes of the maxilla and the horizontal parts of the palatine bones that form the hard palate." [http://medical-dictionary.thefreedictionary.com/transverse+palatine+suture] synonym: "transverse palatine suture of skull" EXACT [FMA:52971] xref: FMA:52971 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4200215 ! suture intersection_of: UBERON:4200215 ! suture intersection_of: connects UBERON:0002397 ! maxilla @@ -238158,7 +236639,6 @@ name: suture of hard palate def: "Any of the sutures of the hard palate." [http://www.merriam-webster.com/medical/palatine%20suture] synonym: "palatine suture" EXACT [http://www.merriam-webster.com/medical/palatine%20suture] is_a: UBERON:0003685 ! cranial suture -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003685 ! cranial suture intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -238168,6 +236648,7 @@ id: UBERON:0035128 name: manus cartilage element synonym: "hand cartilage condensation" EXACT [EMAPA:32631] xref: EMAPA:32631 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0015064 ! autopod cartilage intersection_of: UBERON:0015063 ! autopod endochondral element @@ -238182,6 +236663,7 @@ id: UBERON:0035129 name: pes cartilage element synonym: "foot cartilage condensation" EXACT [EMAPA:32657] xref: EMAPA:32657 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015064 ! autopod cartilage intersection_of: UBERON:0015063 ! autopod endochondral element @@ -238203,7 +236685,8 @@ synonym: "ossicle element" BROAD [EMAPA:17824, http://en.wikipedia.org/wiki/Audi synonym: "ossicle element of ear" RELATED [] synonym: "ossicle element of inner ear" RELATED [] synonym: "ossicular chain element" RELATED PLURAL [] -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: contributes_to_morphology_of UBERON:0001756 ! middle ear relationship: develops_from UBERON:0003099 {source="http://www.ncbi.nlm.nih.gov/pubmed/11237469", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! cranial neural crest @@ -238255,7 +236738,6 @@ synonym: "anterior nasal spine" RELATED [] synonym: "spina nasalis anterior corporis maxillae" EXACT LATIN [FMA:75770, FMA:TA] xref: FMA:75770 xref: http://en.wikipedia.org/wiki/Anterior_nasal_spine -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -238284,7 +236766,6 @@ name: preputial space def: "Space between the prepuce and glans penis or clitoris." [http://orcid.org/0000-0002-6601-2165] synonym: "preputial cavity" EXACT [FMA:28606] xref: FMA:28606 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0011374 ! prepuce @@ -238340,7 +236821,6 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0035149 name: gingival epithelial attachment xref: http://www.snomedbrowser.com/Codes/Details/85036004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: located_in UBERON:0008805 ! gingival groove relationship: part_of UBERON:0001949 ! gingival epithelium @@ -238559,7 +237039,6 @@ xref: FMA:9397 xref: http://linkedlifedata.com/resource/umls/id/C0227190 xref: http://www.snomedbrowser.com/Codes/Details/245407007 xref: NCIT:C12252 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus @@ -238599,7 +237078,6 @@ xref: FMA:75348 xref: http://linkedlifedata.com/resource/umls/id/C1519951 xref: http://www.snomedbrowser.com/Codes/Details/188958004 xref: NCIT:C34326 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space relationship: part_of UBERON:0004754 ! foramen ovale of heart @@ -238706,7 +237184,6 @@ xref: http://en.wikipedia.org/wiki/Base_of_the_heart xref: http://linkedlifedata.com/resource/umls/id/C0225810 xref: http://www.snomedbrowser.com/Codes/Details/277701000 xref: NCIT:C48589 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000948 ! heart @@ -238722,7 +237199,6 @@ xref: FMA:9396 xref: http://linkedlifedata.com/resource/umls/id/C0227188 xref: http://www.snomedbrowser.com/Codes/Details/245406003 xref: NCIT:C12251 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus @@ -238775,7 +237251,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0229881 xref: http://www.snomedbrowser.com/Codes/Details/362596009 xref: NCIT:C12235 xref: Tonsillar:fossa -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002372 ! tonsil @@ -238818,7 +237293,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/360629008 xref: NCIT:C32837 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005396 ! carotid artery segment -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005396 ! carotid artery segment intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery @@ -238832,7 +237306,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227155 xref: http://www.snomedbrowser.com/Codes/Details/276960004 xref: NCIT:C12240 is_a: UBERON:0000328 ! gut wall -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_posterior_side_of UBERON:0001729 ! oropharynx intersection_of: part_of UBERON:0001729 ! oropharynx @@ -238849,7 +237322,6 @@ xref: FMA:15717 xref: http://linkedlifedata.com/resource/umls/id/C0227427 xref: http://www.snomedbrowser.com/Codes/Details/245447000 xref: NCIT:C32070 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000159 ! anal canal @@ -238872,8 +237344,7 @@ xref: http://en.wikipedia.org/wiki/Posterior_external_jugular_vein xref: http://linkedlifedata.com/resource/umls/id/C0226546 xref: http://www.snomedbrowser.com/Codes/Details/59579009 xref: NCIT:C33360 -is_a: UBERON:0003502 ! neck blood vessel -is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001101 ! external jugular vein relationship: tributary_of UBERON:0001101 ! external jugular vein @@ -238934,7 +237405,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227546 xref: http://www.snomedbrowser.com/Codes/Details/245394007 xref: NCIT:C32649 is_a: UBERON:0001560 ! neck of organ -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -238953,7 +237423,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225492 xref: http://www.snomedbrowser.com/Codes/Details/179268001 xref: NCIT:C12242 is_a: UBERON:0000328 ! gut wall -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001728 ! nasopharynx [Term] @@ -239007,7 +237476,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227156 xref: http://www.snomedbrowser.com/Codes/Details/362125007 xref: NCIT:C12239 is_a: UBERON:0000328 ! gut wall -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_lateral_side_of UBERON:0001729 ! oropharynx @@ -239070,7 +237538,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230049 xref: http://www.snomedbrowser.com/Codes/Details/139784008 xref: NCIT:C45911 xref: Tuberculum:sellae -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0003689 {source="FMA"} ! sella turcica @@ -239113,7 +237580,6 @@ xref: FMA:19596 xref: http://linkedlifedata.com/resource/umls/id/C0227962 xref: http://www.snomedbrowser.com/Codes/Details/279698000 xref: NCIT:C13090 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0002367 ! prostate gland @@ -239142,7 +237608,6 @@ xref: FMA:19583 xref: http://linkedlifedata.com/resource/umls/id/C0227963 xref: http://www.snomedbrowser.com/Codes/Details/279682007 xref: NCIT:C13086 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003893 ! capsule @@ -239203,7 +237668,6 @@ xref: FMA:19595 xref: http://linkedlifedata.com/resource/umls/id/C0227958 xref: http://www.snomedbrowser.com/Codes/Details/279702001 xref: NCIT:C13088 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland @@ -239251,7 +237715,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/314302003 xref: NCIT:C33114 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001627 ! middle cerebral artery relationship: branching_part_of UBERON:0001627 ! middle cerebral artery @@ -239298,7 +237761,6 @@ xref: FMA:15589 xref: http://linkedlifedata.com/resource/umls/id/C0227609 xref: http://www.snomedbrowser.com/Codes/Details/279375001 xref: NCIT:C32107 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region disjoint_from: UBERON:0035471 {source="lexical"} ! posterior surface of kidney relationship: part_of UBERON:0002113 {source="ncithesaurus"} ! kidney @@ -239343,7 +237805,6 @@ xref: Houston:valve xref: http://linkedlifedata.com/resource/umls/id/C0227403 xref: http://www.snomedbrowser.com/Codes/Details/259687002 xref: NCIT:C33807 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001052 {source="ncithesaurus"} ! rectum @@ -239358,7 +237819,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/314304002 xref: NCIT:C32082 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001624 ! anterior cerebral artery disjoint_from: UBERON:0035508 {source="lexical"} ! branch of posterior cerebral artery @@ -239374,7 +237834,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225486 xref: http://www.snomedbrowser.com/Codes/Details/361937006 xref: NCIT:C12244 is_a: UBERON:0000328 ! gut wall -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_lateral_side_of UBERON:0001728 ! nasopharynx @@ -239434,7 +237893,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0447038 xref: http://www.snomedbrowser.com/Codes/Details/244216003 xref: NCIT:C32552 is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001070 ! external carotid artery relationship: branching_part_of UBERON:0001070 ! external carotid artery @@ -239449,7 +237907,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225484 xref: http://www.snomedbrowser.com/Codes/Details/361936002 xref: NCIT:C12243 is_a: UBERON:0000328 ! gut wall -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_posterior_side_of UBERON:0001728 ! nasopharynx intersection_of: part_of UBERON:0001728 ! nasopharynx @@ -239478,7 +237935,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/303427008 xref: NCIT:C33678 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035403 ! hypophysial artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -239509,8 +237965,6 @@ xref: FMA:78540 xref: http://linkedlifedata.com/resource/umls/id/C0228123 xref: http://www.snomedbrowser.com/Codes/Details/32967008 xref: NCIT:C32459 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater @@ -239551,8 +238005,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228122 xref: http://www.snomedbrowser.com/Codes/Details/280380009 xref: NCIT:C32584 is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002363 ! dura mater relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater @@ -239577,7 +238029,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225789 xref: http://www.snomedbrowser.com/Codes/Details/362002008 xref: Mediastinal:pleura xref: NCIT:C94820 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: has_part UBERON:0003728 {source="FMA"} ! mediastinum relationship: part_of UBERON:0002400 {source="FMA"} ! parietal pleura @@ -239620,7 +238071,6 @@ xref: FMA:19594 xref: http://linkedlifedata.com/resource/umls/id/C0227959 xref: http://www.snomedbrowser.com/Codes/Details/279703006 xref: NCIT:C13087 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0002367 {source="ncithesaurus"} ! prostate gland @@ -239631,7 +238081,6 @@ synonym: "triangular ligament" BROAD [FMA:15821] xref: FMA:15821 xref: http://www.snomedbrowser.com/Codes/Details/279968005 is_a: UBERON:0000211 ! ligament -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002107 ! liver @@ -239661,7 +238110,6 @@ xref: FMA:9395 xref: http://linkedlifedata.com/resource/umls/id/C0227186 xref: http://www.snomedbrowser.com/Codes/Details/245405004 xref: NCIT:C12250 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus @@ -239674,7 +238122,6 @@ xref: FMA:64171 xref: http://linkedlifedata.com/resource/umls/id/C0225566 xref: http://www.snomedbrowser.com/Codes/Details/361949007 xref: NCIT:C32935 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001737 {source="ncithesaurus"} ! larynx @@ -239702,7 +238149,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227844 xref: http://www.snomedbrowser.com/Codes/Details/362257002 xref: NCIT:C32514 xref: Uterine:cavity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: adjacent_to UBERON:0001295 ! endometrium @@ -239722,7 +238168,6 @@ xref: FMA:11355 xref: http://linkedlifedata.com/resource/umls/id/C0230151 xref: http://www.snomedbrowser.com/Codes/Details/46297007 xref: NCIT:C32393 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001103 {source="ncithesaurus"} ! diaphragm @@ -239735,7 +238180,6 @@ xref: FMA:15590 xref: http://linkedlifedata.com/resource/umls/id/C0227610 xref: http://www.snomedbrowser.com/Codes/Details/279376000 xref: NCIT:C32895 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0002113 ! kidney @@ -239788,7 +238232,6 @@ xref: FMA:19590 xref: http://linkedlifedata.com/resource/umls/id/C0426735 xref: http://www.snomedbrowser.com/Codes/Details/279694003 xref: NCIT:C13091 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0002367 ! prostate gland @@ -239838,7 +238281,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/303428003 xref: NCIT:C32777 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035403 ! hypophysial artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -239854,7 +238296,6 @@ xref: FMA:62842 xref: http://linkedlifedata.com/resource/umls/id/C0229703 xref: http://www.snomedbrowser.com/Codes/Details/327052008 xref: NCIT:C33031 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0000029 ! lymph node @@ -239868,7 +238309,6 @@ xref: FMA:16518 xref: http://linkedlifedata.com/resource/umls/id/C0230231 xref: http://www.snomedbrowser.com/Codes/Details/260725009 xref: NCIT:C32670 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament intersection_of: UBERON:0008845 ! nonskeletal ligament @@ -240038,7 +238478,6 @@ xref: http://en.wikipedia.org/wiki/Body_of_gallbladder xref: http://linkedlifedata.com/resource/umls/id/C0227545 xref: http://www.snomedbrowser.com/Codes/Details/245392006 xref: NCIT:C32647 -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder @@ -240279,8 +238718,6 @@ xref: TAO:0000235 xref: ZFA:0000235 is_a: UBERON:0006569 {source="ZFA"} ! diencephalic nucleus is_a: UBERON:0035568 ! superficial pretectal nucleus -relationship: never_in_taxon NCBITaxon:27686 {source="ISBN:0471888893"} ! Erpetoichthys -relationship: never_in_taxon NCBITaxon:7900 {source="ISBN:0471888893"} ! Acipenseridae relationship: only_in_taxon NCBITaxon:32443 ! Teleostei relationship: part_of UBERON:2000687 {source="ZFA"} ! superficial pretectum @@ -240323,7 +238760,6 @@ xref: ZFA:0000635 is_a: UBERON:0014450 ! pretectal nucleus intersection_of: UBERON:0000125 ! neural nucleus intersection_of: part_of UBERON:2000183 ! central pretectum -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:2000183 ! central pretectum relationship: present_in_taxon NCBITaxon:118040 {source="ISBN:0471888893"} ! Squalomorphii relationship: present_in_taxon NCBITaxon:7898 {source="ISBN:0471888893"} ! Actinopterygii @@ -240348,7 +238784,6 @@ def: "Any nucleus found in the superficial pretectum." [http://orcid.org/0000-00 is_a: UBERON:0014450 ! pretectal nucleus intersection_of: UBERON:0000125 ! neural nucleus intersection_of: part_of UBERON:2000687 ! superficial pretectum -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:2000687 ! superficial pretectum relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} ! Squalomorphii @@ -240364,7 +238799,6 @@ xref: TAO:0000601 xref: ZFA:0000601 is_a: UBERON:0006569 ! diencephalic nucleus is_a: UBERON:0014450 ! pretectal nucleus -relationship: never_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001944 ! pretectal region relationship: part_of UBERON:2000293 {source="ZFA"} ! synencephalon relationship: present_in_taxon NCBITaxon:118040 {src="ISBN:0471888893"} ! Squalomorphii @@ -240592,7 +239026,13 @@ synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "ophthalmic part of trigeminal ganglion" RELATED [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0003070 ! trigeminal placode complex +relationship: develops_from UBERON:0007811 ! craniocervical region +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: develops_from UBERON:0035597 ! profundal placode relationship: immediate_transformation_of UBERON:0035597 ! profundal placode relationship: part_of UBERON:0001675 ! trigeminal ganglion @@ -240605,7 +239045,13 @@ synonym: "maxillomandibular part of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion -is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +relationship: develops_from UBERON:0000033 ! head +relationship: develops_from UBERON:0000153 ! anterior region of body +relationship: develops_from UBERON:0003070 ! trigeminal placode complex +relationship: develops_from UBERON:0007811 ! craniocervical region +relationship: develops_from UBERON:0013701 ! main body axis +relationship: develops_from UBERON:0013702 ! body proper relationship: develops_from UBERON:0035598 ! maxillomandibular placode relationship: immediate_transformation_of UBERON:0035598 ! maxillomandibular placode relationship: part_of UBERON:0001675 ! trigeminal ganglion @@ -240647,8 +239093,6 @@ synonym: "cartilage of auditory canal" EXACT [FMA:61298] synonym: "cartilago meatus acustici" EXACT [FMA:TA] synonym: "external acoustic meatus cartilage" EXACT [FMA:61298] xref: FMA:61298 -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: part_of UBERON:0001352 ! external acoustic meatus @@ -240665,7 +239109,6 @@ synonym: "dorsal nerve cord" NARROW [WBbt:0006750] xref: WBbt:0006750 is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster relationship: intersects_midsagittal_plane_of UBERON:0001137 ! dorsum -relationship: never_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0001137 ! dorsum [Term] @@ -240676,7 +239119,6 @@ comment: Louveau et al (DOI:10.1038/nature14432) claim the discovery of lymphati synonym: "dural lymph vasculature" RELATED [] synonym: "dural lymph vessel" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: located_in UBERON:0002363 ! dura mater relationship: located_in UBERON:0002363 ! dura mater @@ -240687,8 +239129,6 @@ id: UBERON:0035609 name: outer root sheath companion layer def: "The innermost layer of the outer root sheath." [http://www.keratin.com/aa/aa022.shtml#03] xref: BTO:0003970 -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0005942 {source="BTO"} ! hair outer root sheath @@ -240697,7 +239137,6 @@ id: UBERON:0035610 name: hair canal def: "Tubular connection between the epidermal surface and the most distal part of the inner root sheath. Contains the hair shaft." [https://doi.org/10.1016/j.cub.2008.12.005] is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0002074 ! hair shaft intersection_of: connects UBERON:0001003 ! skin epidermis @@ -240728,7 +239167,6 @@ synonym: "nasal turbinal element" EXACT [] synonym: "nasal turbinate" EXACT [] synonym: "turbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] synonym: "turbinate" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element relationship: located_in UBERON:0001707 ! nasal cavity relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda @@ -240934,8 +239372,8 @@ relationship: innervates UBERON:0002411 ! clitoris id: UBERON:0035651 name: glans xref: http://en.wikipedia.org/wiki/Glans +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure union_of: UBERON:0001299 ! glans penis union_of: UBERON:0006653 ! glans clitoris @@ -240985,7 +239423,6 @@ def: "The anterior facial vein receives a branch of considerable size, the deep xref: FMA:50916 xref: http://en.wikipedia.org/wiki/Deep_facial_vein is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001653 ! facial vein relationship: tributary_of UBERON:0001653 ! facial vein @@ -240997,7 +239434,6 @@ synonym: "anterior parotid vein" EXACT [FMA:50919] synonym: "parotid branch of facial vein" EXACT [FMA:50919] xref: FMA:50919 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0001831 ! parotid gland @@ -241014,7 +239450,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1711319 xref: MA:0002116 xref: NCIT:C52687 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001653 ! facial vein relationship: tributary_of UBERON:0001653 ! facial vein @@ -241045,6 +239480,7 @@ synonym: "primary yolk sac space" EXACT [FMA:305888] xref: EHDAA2:0001503 xref: EMAPA:36039 xref: FMA:305888 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005251 ! yolk sac cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0008853 ! parietal yolk sac @@ -241139,7 +239575,6 @@ synonym: "heart cavity" EXACT [FMA:9464] synonym: "heart lumen" EXACT [EHDAA2:0004181] xref: EHDAA2:0004181 xref: FMA:9464 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0004151 ! cardiac chamber @@ -241433,9 +239868,7 @@ id: UBERON:0035806 name: Hensen stripe def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna] synonym: "Hensen's stripe" EXACT [MGI:anna] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="cjm"} ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0002233 ! tectorial membrane of cochlea relationship: part_of UBERON:0001855 {source="cjm"} ! cochlear duct of membranous labyrinth @@ -241511,7 +239944,6 @@ def: "The part of the ventral body cavity that is within the abdominal segment o synonym: "cavitas abdominis et pelvis" EXACT LATIN [FMA:TA] xref: Abdominopelvic:cavity xref: FMA:12267 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0002417 ! abdominal segment of trunk @@ -241636,7 +240068,6 @@ synonym: "costal part of diaphragm" EXACT [FMA:58277] synonym: "pars costalis diaphragmatis" EXACT LATIN [FMA:TA] xref: FMA:58277 xref: http://www.snomedbrowser.com/Codes/Details/368048007 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0015212 ! lateral structure @@ -241710,7 +240141,6 @@ synonym: "apex of heart ventricle" RELATED [MA:0003017] synonym: "apical region of cardiac ventricle" EXACT [] xref: EMAPA:37425 {source="MA:th"} xref: MA:0003017 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002082 ! cardiac ventricle @@ -241829,7 +240259,6 @@ xref: FMA:53177 xref: http://www.snomedbrowser.com/Codes/Details/362642002 xref: Infraorbital:margin is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0035849 ! orbital margin [Term] @@ -241842,7 +240271,6 @@ synonym: "orbital rim" EXACT [http://www.medilexicon.com/medicaldictionary.php?t xref: FMA:53176 xref: http://www.snomedbrowser.com/Codes/Details/362641009 is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001697 ! orbit of skull relationship: surrounds UBERON:0004867 ! orbital cavity @@ -241853,7 +240281,6 @@ def: "A ridge of bone connecting left and right orbital margins located beneath synonym: "infra-orbital bridge" EXACT [] is_a: UBERON:0005913 ! zone of bone organ relationship: connects UBERON:0001697 ! orbit of skull -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0003129 ! skull relationship: present_in_taxon NCBITaxon:8499 @@ -242022,7 +240449,6 @@ name: dorsal auditory area synonym: "AUDd" RELATED ABBREVIATION [MBA:1011] xref: MBA:1011 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex [Term] @@ -242031,7 +240457,6 @@ name: posterior parietal association areas synonym: "PTLp" RELATED ABBREVIATION [MBA:22] xref: MBA:22 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex [Term] @@ -242040,7 +240465,6 @@ name: postrhinal area synonym: "VISpor" RELATED ABBREVIATION [MBA:312782628] xref: MBA:312782628 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -242049,7 +240473,6 @@ name: primary visual area, layer 6a synonym: "VISp6a" RELATED ABBREVIATION [MBA:33] xref: MBA:33 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -242058,7 +240481,6 @@ name: anteromedial visual area synonym: "VISam" RELATED ABBREVIATION [MBA:394] xref: MBA:394 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -242067,7 +240489,6 @@ name: anterolateral visual area synonym: "VISal" RELATED ABBREVIATION [MBA:402] xref: MBA:402 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -242076,7 +240497,6 @@ name: lateral visual area synonym: "VISl" RELATED ABBREVIATION [MBA:409] xref: MBA:409 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -242085,7 +240505,6 @@ name: posterolateral visual area synonym: "VISpl" RELATED ABBREVIATION [MBA:425] xref: MBA:425 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -242094,7 +240513,6 @@ name: posteromedial visual area synonym: "VISpm" RELATED ABBREVIATION [MBA:533] xref: MBA:533 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -242103,7 +240521,6 @@ name: primary visual area, layer 4 synonym: "VISp4" RELATED ABBREVIATION [MBA:721] xref: MBA:721 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -242112,7 +240529,6 @@ name: primary visual area, layer 5 synonym: "VISp5" RELATED ABBREVIATION [MBA:778] xref: MBA:778 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -242121,7 +240537,6 @@ name: primary visual area, layer 2/3 synonym: "VISp2/3" RELATED ABBREVIATION [MBA:821] xref: MBA:821 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -242130,7 +240545,6 @@ name: anterolateral visual area, layer 5 synonym: "VISal5" RELATED ABBREVIATION [MBA:233] xref: MBA:233 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area [Term] @@ -242139,7 +240553,6 @@ name: posteromedial visual area, layer 6a synonym: "VISpm6a" RELATED ABBREVIATION [MBA:257] xref: MBA:257 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] @@ -242148,7 +240561,6 @@ name: postrhinal area, layer 4 synonym: "VISpor4" RELATED ABBREVIATION [MBA:312782640] xref: MBA:312782640 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area [Term] @@ -242157,7 +240569,6 @@ name: rostrolateral visual area synonym: "VISrl" RELATED ABBREVIATION [MBA:417] xref: MBA:417 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal association areas [Term] @@ -242166,7 +240577,6 @@ name: anteromedial visual area, layer 5 synonym: "VISam5" RELATED ABBREVIATION [MBA:433] xref: MBA:433 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area [Term] @@ -242175,7 +240585,6 @@ name: posteromedial visual area, layer 4 synonym: "VISpm4" RELATED ABBREVIATION [MBA:501] xref: MBA:501 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] @@ -242184,7 +240593,6 @@ name: lateral visual area, layer 4 synonym: "VISl4" RELATED ABBREVIATION [MBA:573] xref: MBA:573 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] @@ -242193,7 +240601,6 @@ name: lateral visual area, layer 5 synonym: "VISl5" RELATED ABBREVIATION [MBA:613] xref: MBA:613 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] @@ -242202,7 +240609,6 @@ name: dorsal auditory area, layer 4 synonym: "AUDd4" RELATED ABBREVIATION [MBA:678] xref: MBA:678 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area [Term] @@ -242211,7 +240617,6 @@ name: lateral visual area, layer 6a synonym: "VISl6a" RELATED ABBREVIATION [MBA:74] xref: MBA:74 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] @@ -242220,7 +240625,6 @@ name: posterolateral visual area, layer 4 synonym: "VISpl4" RELATED ABBREVIATION [MBA:869] xref: MBA:869 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area [Term] @@ -242229,7 +240633,6 @@ name: rostrolateral area, layer 5 synonym: "VISrl5" RELATED ABBREVIATION [MBA:312782616] xref: MBA:312782616 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area [Term] @@ -242377,7 +240780,6 @@ synonym: "PCLa" RELATED ABBREVIATION [HBA:4071] xref: FMA:273508 xref: HBA:4071 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule @@ -242405,7 +240807,6 @@ synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] xref: FMA:273511 xref: HBA:4125 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 {source="HBA"} ! parietal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule @@ -242492,9 +240893,7 @@ relationship: part_of UBERON:0002559 {source="HBA"} ! medullary reticular format id: UBERON:0035941 name: Kimura membrane def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [http://www.ncbi.nlm.nih.gov/pubmed/18797289, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="cjm"} ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea [Term] @@ -242502,7 +240901,6 @@ id: UBERON:0035942 name: space between upper and lower jaws def: "The space between the upper jaw skeleton and lower jaw skeleton (including teeth) that is formed when when biting." [UBERON:cjm] synonym: "bite" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0003277 ! skeleton of upper jaw relationship: adjacent_to UBERON:0003278 ! skeleton of lower jaw @@ -242571,7 +240969,6 @@ synonym: "epididymis lumen" EXACT [FMA:18274] synonym: "lumen of epididymis" EXACT [FMA:18274] xref: FMA:18274 xref: http://www.snomedbrowser.com/Codes/Details/367722009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001301 ! epididymis @@ -242583,8 +240980,6 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0035957 name: antotic pillar def: "The posteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen @@ -242592,8 +240987,6 @@ relationship: part_of UBERON:0005745 ! optic foramen id: UBERON:0035958 name: preoptic pillar def: "The anteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen @@ -242629,7 +241022,6 @@ def: "Supravaginal portion of cervix: the part of the cervix uteri that does not synonym: "portio supravaginalis cervicis" EXACT LATIN [FMA:TA] xref: BTO:0001851 xref: FMA:77055 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000002 {source="FMA"} ! uterine cervix @@ -242641,7 +241033,6 @@ def: "Epithelial lining fluid forms a thin fluid layer that covers the mucosa of synonym: "ELF" RELATED [BTO:0005566] xref: BTO:0005566 xref: FMA:276456 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006314 ! bodily fluid relationship: part_of UBERON:0002299 ! alveolus of lung relationship: produced_by UBERON:0035967 ! alveolar mucosa @@ -242686,7 +241077,6 @@ xref: BTO:0004277 xref: FMA:58371 xref: http://www.snomedbrowser.com/Codes/Details/281086001 is_a: UBERON:0004923 {source="FMA"} ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001773 {source="BTO"} ! sclera [Term] @@ -242746,7 +241136,6 @@ xref: FMA:83707 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=210 xref: http://www.snomedbrowser.com/Codes/Details/369271006 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation @@ -242760,7 +241149,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1105 xref: MBA:1037 xref: NLX:144245 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region [Term] @@ -243211,7 +241599,7 @@ id: UBERON:0036073 name: respiratory primordium mesenchyme synonym: "respiratory primordium associated mesenchyme" EXACT [EHDAA2:0004071] xref: EHDAA2:0004071 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0008947 ! respiratory primordium @@ -243226,8 +241614,6 @@ synonym: "vena aqueductus vestibuli" EXACT LATIN [FMA:TA] synonym: "vestibular aqueduct vein" EXACT [FMA:52367] xref: FMA:52367 is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0003502 ! neck blood vessel -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001641 ! transverse sinus relationship: part_of UBERON:0007160 ! inferior petrosal sinus @@ -243257,7 +241643,6 @@ def: "An infrequent rudimentary duct, or protrusion of the mucous membrane into comment: Taxon notes notes: In domestic mammals the Ductus incisivus is considerably better developed than in man. It is not accommodated in a Canalis incisivus, as in man, but in the Fissura palatina[NOMINA ANATOMICA VETERINARIA (2005)] synonym: "ductus incisivus" EXACT LATIN [FMA:TA] xref: FMA:77282 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space relationship: part_of UBERON:0006672 ! incisive canal @@ -243266,7 +241651,6 @@ id: UBERON:0036145 name: glymphatic system def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [https://doi.org/10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] xref: EMAPA:37872 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001016 ! nervous system @@ -243297,7 +241681,6 @@ name: orovelar muscle is_a: CARO:0000003 is_a: UBERON:0001630 ! muscle organ relationship: attaches_to UBERON:0013653 {comment="to be checked"} ! velar skeleton -relationship: never_in_taxon NCBITaxon:7776 ! Gnathostomata relationship: only_in_taxon NCBITaxon:89593 ! Craniata relationship: part_of RO:0002577 ! system @@ -243318,8 +241701,8 @@ def: "An organ subunit in the skin that gives rise to cutaneous appendage." [htt synonym: "cutaneous appendage follicle" EXACT [] synonym: "follicle" BROAD [] synonym: "skin follicle" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_potential_to_develop_into UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0000014 ! zone of skin @@ -243385,7 +241768,6 @@ synonym: "limen insula" RELATED [NeuroNames:2072] xref: DHBA:12166 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2072 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034773 {source="DHBA"} ! uncus of parahippocampal gyrus [Term] @@ -243395,7 +241777,6 @@ def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. xref: Sattler%27s:layer is_a: UBERON:0004923 ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] @@ -243403,7 +241784,6 @@ id: UBERON:0036168 name: Haller's layer comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. is_a: UBERON:0004923 ! organ component layer -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] @@ -243510,7 +241890,6 @@ xref: FMA:61175 xref: http://en.wikipedia.org/wiki/Incisura_anterior_auris xref: http://www.snomedbrowser.com/Codes/Details/362542005 is_a: UBERON:0006846 ! surface groove -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0006846 ! surface groove intersection_of: adjacent_to UBERON:0010887 ! tragus intersection_of: adjacent_to UBERON:0016467 ! antitragus @@ -243621,7 +242000,6 @@ def: "A notochord that has persisted beyond the embryonic stage." [UBERON:cjm] is_a: UBERON:0002328 ! notochord intersection_of: UBERON:0002328 ! notochord intersection_of: part_of UBERON:0009953 ! post-embryonic organism -relationship: never_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0009953 ! post-embryonic organism relationship: present_in_taxon NCBITaxon:118072 ! Coelacanthimorpha relationship: present_in_taxon NCBITaxon:7737 ! Branchiostoma @@ -243661,7 +242039,6 @@ synonym: "lactiferous gland parenchyma" EXACT [] synonym: "mammary gland parenchyma" EXACT [] synonym: "parenchyma of lactiferous gland" EXACT [] is_a: UBERON:0000353 ! parenchyma -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -243729,9 +242106,7 @@ id: UBERON:0036250 name: zone of basilar membrane of cochlea synonym: "zone of organ of corti" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/361065006 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005764 ! acellular membrane intersection_of: part_of UBERON:0002226 ! basilar membrane of cochlea relationship: part_of UBERON:0002226 ! basilar membrane of cochlea @@ -243765,7 +242140,6 @@ synonym: "piriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasa synonym: "pyriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] xref: FMA:53137 xref: http://en.wikipedia.org/wiki/Anterior_nasal_aperture -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0036253 ! orifice of skull relationship: part_of UBERON:0006813 ! nasal skeleton @@ -243814,7 +242188,6 @@ name: uterine ligament def: "Any of the eight ligaments pertaining to the uterus including the anterior, posterior, lateral, sacro-uterine and round ligaments." [NCIT:C61360] xref: http://www.snomedbrowser.com/Codes/Details/272668006 xref: NCIT:C61360 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000211 ! ligament @@ -243854,7 +242227,6 @@ id: UBERON:0036265 name: conjunctival papilla synonym: "conjunctival papillae" EXACT PLURAL [] xref: http://www.snomedbrowser.com/Codes/Details/280681004 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:2001995 ! papilla intersection_of: UBERON:2001995 ! papilla intersection_of: part_of UBERON:0001811 ! conjunctiva @@ -243867,7 +242239,6 @@ def: "The part of vertebra located between the inferior and superior articular p synonym: "pars interarticularis" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/705098005 xref: Pars:interarticularis -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0002412 ! vertebra @@ -243917,7 +242288,6 @@ relationship: part_of RO:0002577 ! system id: UBERON:0036271 name: omphalopleure def: "A fetal membrane, part of the yolk sac, that appears during some placentation processes." [BGEE:ANiknejad, http://www.ncbi.nlm.nih.gov/pubmed/10761048, http://www.ncbi.nlm.nih.gov/pubmed/29416852, https://github.com/obophenotype/uberon/issues/1426] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000158 ! membranous layer relationship: only_in_taxon NCBITaxon:9347 ! Eutheria relationship: part_of UBERON:0001040 ! yolk sac @@ -244016,7 +242386,6 @@ synonym: "uterine adnexa" EXACT [FMA:265256] xref: FMA:265256 xref: http://en.wikipedia.org/wiki/Adnexa_of_uterus xref: http://www.snomedbrowser.com/Codes/Details/361373008 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus @@ -244042,7 +242411,6 @@ def: "A mucosa that is part of a lip region [Automatically generated definition] synonym: "labial mucosa" EXACT [UBERON:cjm] xref: NCIT:C12226 is_a: UBERON:0003729 ! mouth mucosa -is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001833 ! lip relationship: part_of UBERON:0001833 ! lip @@ -244065,7 +242433,6 @@ xref: FMA:51892 xref: http://www.snomedbrowser.com/Codes/Details/731368004 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001638 ! vein intersection_of: tributary_of UBERON:0001673 ! central retinal vein relationship: part_of UBERON:0001673 ! central retinal vein @@ -244076,7 +242443,6 @@ id: UBERON:0036301 name: vasculature of spleen xref: FMA:225251 xref: http://www.snomedbrowser.com/Codes/Details/297287005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 {source="FMA"} ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -244094,7 +242460,6 @@ union_of: UBERON:0036303 ! vasculature of central nervous system id: UBERON:0036303 name: vasculature of central nervous system xref: FMA:259905 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036302 ! vasculature of central nervous system plus retina intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001017 ! central nervous system @@ -244137,7 +242502,6 @@ synonym: "gallbladder wall" EXACT [FMA:14657] xref: FMA:14657 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall is_a: UBERON:0003697 ! abdominal wall -is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder @@ -244169,7 +242533,6 @@ synonym: "anal canal wall" EXACT [FMA:15704] xref: FMA:15704 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall is_a: UBERON:0001169 ! wall of large intestine -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000159 ! anal canal intersection_of: part_of UBERON:0001007 ! digestive system @@ -244202,7 +242565,6 @@ name: wall of pulmonary artery synonym: "pulmonary arterial wall" EXACT [FMA:18211] xref: FMA:18211 is_a: UBERON:0000415 {source="FMA"} ! artery wall -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002012 ! pulmonary artery relationship: part_of UBERON:0002012 {source="FMA"} ! pulmonary artery @@ -244215,7 +242577,6 @@ synonym: "wall of fallopian tube" EXACT [FMA:18303] synonym: "wall of oviduct" EXACT [FMA:18303] xref: FMA:18303 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0003889 ! fallopian tube @@ -244227,7 +242588,6 @@ name: wall of urethra synonym: "urethral wall" EXACT [FMA:19779] xref: FMA:19779 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 {source="FMA"} ! urethra @@ -244238,7 +242598,6 @@ name: wall of vagina synonym: "vaginal wall" EXACT [FMA:19971] xref: FMA:19971 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000996 ! vagina @@ -244270,7 +242629,6 @@ id: UBERON:0036655 name: wall of cerebral aqueduct xref: FMA:242774 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036661 ! wall of ventricular system of brain intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002289 ! midbrain cerebral aqueduct @@ -244291,7 +242649,6 @@ id: UBERON:0036657 name: wall of fourth ventricle xref: FMA:242778 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036661 ! wall of ventricular system of brain intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002422 ! fourth ventricle @@ -244303,7 +242660,6 @@ name: wall of central canal of spinal cord synonym: "wall of central canal" EXACT [FMA:242780] xref: FMA:242780 is_a: UBERON:0000060 ! anatomical wall -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002291 ! central canal of spinal cord @@ -244348,7 +242704,6 @@ synonym: "orbit wall" EXACT [FMA:63144] xref: FMA:63144 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system -is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:0001697 {source="FMA"} ! orbit of skull @@ -244359,7 +242714,6 @@ name: wall of common carotid artery synonym: "common carotid arterial wall" EXACT [FMA:66284] xref: FMA:66284 is_a: UBERON:0000415 {source="FMA"} ! artery wall -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001530 ! common carotid artery plus branches relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches @@ -244386,8 +242740,6 @@ name: wall of membranous labyrinth synonym: "membranous labyrinth wall" EXACT [FMA:79837] xref: FMA:79837 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth @@ -244398,7 +242750,6 @@ name: wall of lacrimal duct synonym: "lacrimal ductal wall" EXACT [FMA:85375] xref: FMA:85375 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall -is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001850 ! lacrimal drainage system relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system @@ -245674,9 +244025,10 @@ is_a: UBERON:0037531 {source="FMA"} ! intestinal lymph node [Term] id: UBERON:0039169 name: anterior intercostal artery +def: "The anterior intercostal branches of internal thoracic artery supply the upper five or six intercostal spaces." [https://en.wikipedia.org/wiki/Intercostal_arteries] synonym: "intercostal branch of internal thoracic artery" EXACT [FMA:10641] xref: FMA:10641 -is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0005612 ! intercostal artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery [Term] @@ -245687,6 +244039,24 @@ xref: FMA:10648 is_a: UBERON:0004573 ! systemic artery relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery +[Term] +id: UBERON:0039175 +name: subarachnoid space of brain +xref: FMA:322073 +is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space +intersection_of: UBERON:0000315 ! subarachnoid space +intersection_of: part_of UBERON:0000955 ! brain +relationship: part_of UBERON:0000955 ! brain + +[Term] +id: UBERON:0039176 +name: subarachnoid space of spinal cord +xref: FMA:322074 +is_a: UBERON:0000315 {source="FMA"} ! subarachnoid space +intersection_of: UBERON:0000315 ! subarachnoid space +intersection_of: part_of UBERON:0002240 ! spinal cord +relationship: part_of UBERON:0002240 ! spinal cord + [Term] id: UBERON:0039185 name: accessory vertebral vein @@ -245711,8 +244081,7 @@ id: UBERON:0039187 name: suprascapular vein def: "The suprascapular vein is a vein running above the scapula. It empties into the external jugular vein." [https://en.wikipedia.org/wiki/Suprascapular_vei] xref: FMA:14319 -is_a: UBERON:0003502 ! neck blood vessel -is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0001101 ! external jugular vein relationship: tributary_of UBERON:0001101 {source="FMA"} ! external jugular vein @@ -245957,13 +244326,145 @@ union_of: UBERON:0006656 ! deep dorsal vein of penis union_of: UBERON:0039421 ! superficial dorsal vein of penis relationship: part_of UBERON:0000989 ! penis +[Term] +id: UBERON:0039835 +name: posterior intercostal artery +is_a: UBERON:0005612 ! intercostal artery + +[Term] +id: UBERON:0039838 +name: seventh anterior intercostal artery +xref: FMA:10649 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery + +[Term] +id: UBERON:0039839 +name: eighth anterior intercostal artery +xref: FMA:10650 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery + +[Term] +id: UBERON:0039840 +name: ninth anterior intercostal artery +xref: FMA:10651 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0006632 {source="FMA"} ! musculo-phrenic artery + +[Term] +id: UBERON:0039841 +name: first anterior intercostal artery +synonym: "first intercostal branch of internal thoracic artery" EXACT [FMA:10652] +xref: FMA:10652 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery + +[Term] +id: UBERON:0039842 +name: second anterior intercostal artery +synonym: "second intercostal branch of internal thoracic artery" EXACT [FMA:10653] +xref: FMA:10653 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery + +[Term] +id: UBERON:0039843 +name: third anterior intercostal artery +synonym: "third intercostal branch of internal thoracic artery" EXACT [FMA:10654] +xref: FMA:10654 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery + +[Term] +id: UBERON:0039844 +name: fourth anterior intercostal artery +synonym: "fourth intercostal branch of internal thoracic artery" EXACT [FMA:10655] +xref: FMA:10655 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery + +[Term] +id: UBERON:0039845 +name: fifth anterior intercostal artery +synonym: "fifth intercostal branch of internal thoracic artery" EXACT [FMA:10656] +xref: FMA:10656 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery + +[Term] +id: UBERON:0039846 +name: sixth anterior intercostal artery +synonym: "sixth intercostal branch of internal thoracic artery" EXACT [FMA:10657] +xref: FMA:10657 +is_a: UBERON:0039169 {source="FMA"} ! anterior intercostal artery +relationship: part_of UBERON:0002456 {source="FMA"} ! internal thoracic artery + +[Term] +id: UBERON:0039847 +name: suprascapular artery +synonym: "transverse scapular artery" EXACT [FMA:10663] +xref: FMA:10663 +is_a: UBERON:0004573 ! systemic artery +relationship: part_of UBERON:0039260 {source="FMA"} ! thyrocervical artery + +[Term] +id: UBERON:0039848 +name: anterior external vertebral venous plexus +xref: FMA:10787 +is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus + +[Term] +id: UBERON:0039849 +name: posterior external vertebral venous plexus +xref: FMA:12852 +is_a: UBERON:0039258 {source="FMA"} ! external vertebral venous plexus + +[Term] +id: UBERON:0039850 +name: left anterior segmental artery +synonym: "anterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13279] +synonym: "anterior segmental artery of left lung" EXACT [FMA:13279] +synonym: "anterior segmental artery of left upper lobe" EXACT [FMA:13279] +xref: FMA:13279 + +[Term] +id: UBERON:0039851 +name: apicoposterior segmental artery +synonym: "apicoposterior artery of left lung" EXACT [FMA:13281] +synonym: "apicoposterior bronchopulmonary segment of left pulmonary artery" EXACT [FMA:13281] +synonym: "left apicoposterior pulmonary artery" EXACT [FMA:13281] +xref: FMA:13281 +is_a: UBERON:0039262 {source="FMA"} ! segmental pulmonary artery + +[Term] +id: UBERON:0039856 +name: right ovarian vein +def: "Ovarian vein, each instance of which is a tributary of some inferior vena cava that drains the right pampiniform plexus of some broad ligament." [FMA:14342] +xref: FMA:14342 +is_a: UBERON:0001145 {source="FMA"} ! ovarian vein +intersection_of: UBERON:0001145 ! ovarian vein +intersection_of: drains UBERON:0002118 ! right ovary +relationship: drains UBERON:0002118 ! right ovary +relationship: part_of UBERON:0001072 ! posterior vena cava +relationship: tributary_of UBERON:0001072 {source="FMA"} ! posterior vena cava + +[Term] +id: UBERON:0039857 +name: left ovarian vein +def: "Ovarian vein, each instance of which is a tributary of some left renal vein that drains the left pampiniform plexus of some broad ligament." [FMA:14347] +xref: FMA:14347 +is_a: UBERON:0001145 {source="FMA"} ! ovarian vein +intersection_of: UBERON:0001145 ! ovarian vein +intersection_of: drains UBERON:0002119 ! left ovary +relationship: drains UBERON:0002119 ! left ovary + [Term] id: UBERON:1000000 name: chin ventral margin def: "Subdivision of the head consisting of the area along the lower edge of the chin." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn is_a: UBERON:0001444 ! subdivision of head -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger relationship: part_of UBERON:0008199 ! chin @@ -246020,9 +244521,9 @@ relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:1000005 name: external ear margin -def: "Anatomical junction consisting of the area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] +def: "Area along the edge of the external ear." [https://github.com/obophenotype/uberon/issues/34, https://orcid.org/0000-0002-2825-0621, UBERON:EJS] subset: phenotype_rcn -is_a: UBERON:0007651 ! anatomical junction +is_a: UBERON:0010000 ! multicellular anatomical structure property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger relationship: part_of UBERON:0001691 ! external ear @@ -246044,7 +244545,7 @@ id: UBERON:1000007 name: forehead protuberance def: "A bulge, knob, or swelling that protrudes from the forehead." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn -is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010188 ! protuberance property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger relationship: part_of UBERON:0008200 ! forehead @@ -246085,8 +244586,8 @@ xref: Melanocytic:nevus xref: MPATH:361 xref: TAO:0005043 xref: ZFA:0005043 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000148 ! melanocyte relationship: part_of UBERON:0002067 {source="ZFA"} ! dermis @@ -246108,7 +244609,6 @@ id: UBERON:1000012 name: nose anterior margin def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger @@ -246119,7 +244619,6 @@ id: UBERON:1000013 name: nose vertex def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger @@ -246264,7 +244763,6 @@ xref: MA:0002487 xref: NCIT:C33603 xref: UMLS:C0229691 {source="ncithesaurus:Splenic_Pulp"} is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen [Term] @@ -246274,7 +244772,6 @@ def: "A parenchyma that is part of a spleen." [OBOL:automatic] synonym: "splenic parenchyma" EXACT [FMA:16029] xref: FMA:16029 is_a: UBERON:0000353 ! parenchyma -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen @@ -246311,7 +244808,6 @@ relationship: part_of UBERON:0002540 ! lateral line system id: UBERON:1500005 name: ischial cartilage def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: develops_from UBERON:0006254 ! ischial cartilage element @@ -246371,7 +244867,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-9114-8737 id: UBERON:1600006 name: paired fin radial element def: "Radial element that is part of a paired fin." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:2100271 ! radial element intersection_of: UBERON:2100271 ! radial element intersection_of: part_of UBERON:0002534 ! paired fin @@ -246437,7 +244932,6 @@ id: UBERON:2000004 name: anterior axial hypoblast synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] xref: ZFA:0000004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast @@ -246448,7 +244942,6 @@ def: "The anterior round region of the yolk cell present after the yolk extensio synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000006 is_a: UBERON:0000475 ! organism subdivision -relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia relationship: part_of UBERON:2000084 ! yolk [Term] @@ -246490,7 +244983,6 @@ synonym: "median fin-fold" RELATED [TAO:0000040] synonym: "median fin-folds" RELATED PLURAL [TAO:0000040] xref: ZFA:0000040 is_a: UBERON:0003102 ! surface structure -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2000043 @@ -246535,7 +245027,6 @@ name: neural plate proneural cluster synonym: "neural plate proneural clusters" EXACT PLURAL [TAO:0000068] synonym: "proneural cluster" RELATED [TAO:0000068] xref: ZFA:0000068 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate @@ -246661,7 +245152,6 @@ def: "Region of the median fin fold that develops into the dorsal fin." [ZFIN:cu synonym: "dorsal fin-fold" EXACT [TAO:0000102] xref: ZFA:0000102 is_a: UBERON:0000481 ! multi-tissue structure -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:2000040 ! median fin fold [Term] @@ -246762,8 +245252,6 @@ name: immature otolith def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)." [ZFIN:curator] synonym: "immature otoliths" EXACT PLURAL [TAO:0000139] is_a: UBERON:0003103 ! compound organ -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003051 ! ear vesicle [Term] @@ -246812,6 +245300,7 @@ name: anterior macula def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] synonym: "am" EXACT [TAO:0000168] xref: ZFA:0000168 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2001096 ! immature anterior macula relationship: part_of UBERON:0002518 ! otolith organ @@ -246823,6 +245312,7 @@ def: "Replacement bone that is bilaterally paired and articulates dorsally with comment: It articulates ventrally with the posterior end of the posterior ceratohyal. synonym: "stylohyal bone" EXACT [TAO:0000171] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001892 ! interhyal element relationship: develops_from UBERON:2001511 ! interhyal cartilage @@ -246894,7 +245384,6 @@ relationship: part_of UBERON:0000935 ! anterior commissure id: UBERON:2000187 name: lateral granular eminence is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000307 ! vestibulolateralis lobe [Term] @@ -246904,7 +245393,6 @@ synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] xref: ZFA:0000188 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -247011,7 +245499,6 @@ id: UBERON:2000210 name: gigantocellular part of magnocellular preoptic nucleus xref: ZFA:0000210 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001928 ! preoptic area [Term] @@ -247020,8 +245507,6 @@ name: gill lamella synonym: "gill lamellae" EXACT PLURAL [TAO:0000211] xref: ZFA:0000211 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill [Term] @@ -247029,7 +245514,6 @@ id: UBERON:2000212 name: granular eminence xref: ZFA:0000212 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -247078,7 +245562,6 @@ id: UBERON:2000224 name: quadrate ventral process def: "Process that is the ventral, posteriorly-oriented bony extension of the quadrate." [TAO:wd] xref: ZFA:0001593 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone @@ -247101,7 +245584,6 @@ synonym: "pleurethmoïde" EXACT [PSPUB:0000134] synonym: "éthmoïde latéral" EXACT [PSPUB:0000164] xref: ZFA:0000226 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:4300111 ! lateral ethmoid element relationship: composed_primarily_of UBERON:0002481 ! bone tissue @@ -247146,6 +245628,7 @@ id: UBERON:2000234 name: macula neglecta def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] xref: ZFA:0000234 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2000558 ! posterior macula relationship: part_of UBERON:0002518 ! otolith organ @@ -247197,7 +245680,6 @@ relationship: part_of UBERON:0011085 ! palatoquadrate arch id: UBERON:2000241 name: midline column xref: ZFA:0000241 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -247239,6 +245721,7 @@ relationship: part_of UBERON:2001875 ! opercular series id: UBERON:2000251 name: adipose fin def: "A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin intersection_of: has_skeleton UBERON:4500004 ! adipose fin skeleton @@ -247299,8 +245782,6 @@ id: UBERON:2000267 name: primary olfactory fiber layer xref: ZFA:0000267 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 ! olfactory bulb [Term] @@ -247365,7 +245846,6 @@ id: UBERON:2000280 name: medial division xref: ZFA:0000280 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -247505,7 +245985,6 @@ consider: ZFA:0000302 id: UBERON:2000305 name: ventral sulcus xref: ZFA:0000305 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001898 ! hypothalamus @@ -247514,7 +245993,6 @@ id: UBERON:2000307 name: vestibulolateralis lobe xref: ZFA:0000307 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -247523,7 +246001,6 @@ name: external yolk syncytial layer def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000309 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer @@ -247569,8 +246046,6 @@ id: UBERON:2000319 name: branchiostegal membrane xref: ZFA:0000319 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill [Term] @@ -247622,7 +246097,6 @@ name: basioccipital posterodorsal region def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] xref: ZFA:0001598 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001692 ! basioccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -247666,7 +246140,6 @@ name: exoccipital posteroventral region def: "Endochondral bone which is the posterodorsal region of the exoccipital bone." [TAO:wd] xref: ZFA:0001597 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: part_of UBERON:0001693 ! exoccipital bone relationship: part_of UBERON:2001620 ! lagenar capsule @@ -247694,8 +246167,6 @@ id: UBERON:2000352 name: external cellular layer xref: ZFA:0000352 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 ! olfactory bulb [Term] @@ -247709,7 +246180,6 @@ synonym: "gill-raker" EXACT [TAO:0000356] synonym: "gillraker" EXACT [TAO:0000356] xref: ZFA:0000356 is_a: UBERON:0008907 ! dermal bone -relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] @@ -247717,8 +246187,6 @@ id: UBERON:2000358 name: granular layer corpus cerebelli xref: ZFA:0000358 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli [Term] @@ -247734,6 +246202,7 @@ name: hypobranchial bone def: "Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0000363 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001893 ! hypobranchial element relationship: develops_from UBERON:2001522 ! hypobranchial cartilage @@ -247838,7 +246307,6 @@ id: UBERON:2000388 name: medial caudal lobe xref: ZFA:0000388 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000307 ! vestibulolateralis lobe [Term] @@ -247874,8 +246342,6 @@ id: UBERON:2000394 name: molecular layer corpus cerebelli xref: ZFA:0000394 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli [Term] @@ -247964,7 +246430,6 @@ relationship: part_of UBERON:0001840 ! semicircular canal id: UBERON:2000414 name: presumptive cephalic mesoderm xref: ZFA:0000414 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000926 ! mesoderm @@ -247976,7 +246441,6 @@ synonym: "alisphenoid" EXACT [TAO:0000419] synonym: "pterosphenoids" EXACT PLURAL [TAO:0000419] xref: ZFA:0000419 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:2001515 ! taenia marginalis posterior relationship: part_of UBERON:0002241 ! chondrocranium @@ -248134,7 +246598,6 @@ synonym: "parurohyal" EXACT [TAO:Arratia_Schultze_1990] synonym: "urohyal" EXACT [PSPUB:0000164] xref: ZFA:0000452 is_a: UBERON:0008907 ! dermal bone -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton @@ -248181,7 +246644,6 @@ name: Weberian ossicle def: "Bone that is an element associated with a Weberian vertebra." [ZFIN:curator] synonym: "Weberian ossicles" EXACT PLURAL [TAO:0000461] xref: ZFA:0000461 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000491 ! solid compound organ is_a: UBERON:0004765 ! skeletal element intersection_of: UBERON:0004765 ! skeletal element @@ -248272,7 +246734,6 @@ id: UBERON:2000479 name: caudal mesencephalo-cerebellar tract xref: ZFA:0000479 is_a: UBERON:0000073 ! regional part of nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:2000318 ! brainstem and spinal white matter [Term] @@ -248324,6 +246785,7 @@ def: "Endochondral bone that is bilaterally paired and forms part of the ventral synonym: "ceratobranchials" EXACT PLURAL [TAO:0000488] xref: ZFA:0000488 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001898 ! ceratobranchial element relationship: develops_from UBERON:2001516 ! ceratobranchial cartilage @@ -248468,7 +246930,6 @@ id: UBERON:2000517 name: glossopharyngeal lobe xref: ZFA:0000517 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -248523,6 +246984,7 @@ synonym: "infrapharyngobranchial bone" EXACT [] synonym: "pharyngobranchials" EXACT PLURAL [TAO:0000527] xref: ZFA:0000527 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001909 ! pharyngobranchial element relationship: develops_from UBERON:2001533 ! pharyngobranchial cartilage @@ -248547,7 +247009,6 @@ id: UBERON:2000532 name: lateral division xref: ZFA:0000532 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -248583,7 +247044,6 @@ replaced_by: ZFA:0000541 id: UBERON:2000542 name: medial column xref: ZFA:0000542 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -248592,7 +247052,6 @@ id: UBERON:2000544 name: pectoral fin actinotrichium def: "Actinotrichium that is part of the pectoral fin." [TAO:wd] xref: ZFA:0005545 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:2000089 ! actinotrichium intersection_of: UBERON:2000089 ! actinotrichium intersection_of: part_of UBERON:0000151 ! pectoral fin @@ -248654,6 +247113,7 @@ def: "Macula that is located in the developing posterior inner ear, and gives ri synonym: "pm" EXACT [TAO:0000558] synonym: "posteromedial macula" EXACT [TAO:0000558] xref: ZFA:0000558 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2001097 ! immature posterior macula @@ -248676,8 +247136,6 @@ id: UBERON:2000573 name: internal cellular layer xref: ZFA:0000573 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 ! olfactory bulb [Term] @@ -248721,7 +247179,6 @@ id: UBERON:2000582 name: saccus dorsalis xref: ZFA:0000582 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001899 ! epithalamus [Term] @@ -248752,7 +247209,6 @@ synonym: "autosphenotic" EXACT [TAO:0000587] synonym: "sphenotics" EXACT PLURAL [TAO:0000587] xref: ZFA:0000587 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0006605 ! tectum synoticum relationship: develops_from UBERON:2001515 ! taenia marginalis posterior @@ -248763,9 +247219,7 @@ relationship: part_of UBERON:0003110 ! otic region id: UBERON:2000589 name: sulcus ypsiloniformis xref: ZFA:0000589 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -248802,7 +247256,6 @@ id: UBERON:2000596 name: pelvic fin actinotrichium def: "Actinotrichium that is part of the pelvic fin." [TAO:wd] xref: ZFA:0005546 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:2000089 ! actinotrichium intersection_of: UBERON:2000089 ! actinotrichium intersection_of: part_of UBERON:0000152 ! pelvic fin @@ -248850,7 +247303,6 @@ synonym: "valvula cerebellum" EXACT PLURAL [ZFA:0000603] xref: TAO:0000603 xref: ZFA:0000603 is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:32443 {contributor="michaelerice", source="http://www.ncbi.nlm.nih.gov/pubmed/2040726"} ! Teleostei relationship: part_of UBERON:0002037 {source="ZFA"} ! cerebellum @@ -248893,7 +247345,6 @@ is_a: UBERON:2001089 ! myoseptum id: UBERON:2000611 name: visceromotor column xref: ZFA:0000611 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001896 ! medulla oblongata @@ -248954,6 +247405,7 @@ def: "Surface structure which is a tactile structure found in the branchial regi synonym: "barbels" EXACT PLURAL [TAO:0000622] synonym: "barble" EXACT [TAO:0000622] xref: ZFA:0000622 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:3000972 ! head external integument structure relationship: develops_from UBERON:2005119 ! barbel primordium relationship: part_of UBERON:0000033 ! head @@ -249057,8 +247509,6 @@ id: UBERON:2000636 name: cerebellar crest xref: ZFA:0000636 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000291 ! medial octavolateralis nucleus [Term] @@ -249193,6 +247643,7 @@ def: "Dorsal branchial arch bone that is bilaterally paired and articulates late synonym: "epibranchial bones" EXACT PLURAL [TAO:0000658] xref: ZFA:0000658 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001904 ! epibranchial element relationship: develops_from UBERON:2001527 ! epibranchial cartilage @@ -249364,6 +247815,7 @@ synonym: "pharyngeal teeth" EXACT [TAO:0000694] xref: ZFA:0000694 is_a: CARO:0000003 is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: attaches_to UBERON:2001239 ! ceratobranchial 5 bone relationship: attaches_to UBERON:2001239 ! ceratobranchial 5 bone @@ -249398,7 +247850,6 @@ def: "Process that is the dorsally directed, vertical process of the entopterygo comment: Fink and Fink 1981, present in gymnotoids. synonym: "endopterygoid vertical strut" EXACT [TAO:0000699] synonym: "mesopterygoid vertical strut" EXACT [TAO:0000699] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000657 ! entopterygoid @@ -249452,7 +247903,6 @@ def: "A multilayer of deep cells of fairly uniform thickness that forms during e synonym: "DEL" EXACT ABBREVIATION [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT PLURAL [TAO:0000711] xref: ZFA:0000711 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm @@ -249462,7 +247912,6 @@ name: internal yolk syncytial layer def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000712 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer @@ -249814,8 +248263,6 @@ id: UBERON:2000766 name: granular layer valvula cerebelli xref: ZFA:0000766 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -250140,7 +248587,6 @@ id: UBERON:2000820 name: presumptive neuron neural tube synonym: "presumptive neurons neural tube" EXACT PLURAL [TAO:0000820] xref: ZFA:0000820 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube @@ -250671,7 +249117,6 @@ name: transverse process of neural arch 3 def: "Endochondral bone that is the anterodorsally oriented process of the third neural arch." [TAO:wd] synonym: "anterodorsal process of neural arch 3" EXACT [TAO:0000911] synonym: "transverse process of the third vertebra" EXACT [TAO:0000911] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001394 ! neural arch 3 @@ -250688,8 +249133,6 @@ id: UBERON:2000913 name: molecular layer valvula cerebelli xref: ZFA:0000913 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -251219,7 +249662,6 @@ relationship: part_of UBERON:2001013 ! myotome somite 10 id: UBERON:2000993 name: lateral wall neural rod xref: ZFA:0000993 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005068 ! neural rod @@ -251442,7 +249884,6 @@ synonym: "hypurapophyses" EXACT PLURAL [TAO:0001028] synonym: "parhypurapophyses" EXACT [TAO:0001028] synonym: "parhypurapophyses processes" EXACT [TAO:0001028] xref: ZFA:0001028 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000438 ! parhypural @@ -251577,7 +250018,6 @@ synonym: "CaDI" EXACT [TAO:0001051] xref: ZFA:0001051 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001532 ! internal carotid artery [Term] @@ -251617,7 +250057,6 @@ is_a: UBERON:0001637 ! artery id: UBERON:2001055 name: pronephric duct opening xref: ZFA:0001055 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003060 ! pronephric duct @@ -251641,7 +250080,6 @@ synonym: "rostral division of the internal carotid artery" EXACT [TAO:0001059] xref: ZFA:0001059 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001532 ! internal carotid artery [Term] @@ -251706,7 +250144,6 @@ name: intestinal bulb def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] synonym: "anterior intestine" EXACT [TAO:0001076] xref: ZFA:0001076 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000160 ! intestine @@ -251723,7 +250160,6 @@ is_obsolete: true id: UBERON:2001089 name: myoseptum xref: ZFA:0001089 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003082 ! myotome @@ -251741,7 +250177,6 @@ synonym: "immature maculae" EXACT PLURAL [TAO:0001095] synonym: "immature sensory patch" EXACT [TAO:0001095] synonym: "immature sensory patches" EXACT [TAO:0001095] xref: ZFA:0001095 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003051 ! ear vesicle @@ -251824,7 +250259,6 @@ name: organizer inducing center def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] synonym: "Nieuwkoop center" EXACT [TAO:0001125] xref: ZFA:0001125 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer @@ -252110,7 +250544,6 @@ id: UBERON:2001181 name: epidermal intermediate stratum xref: ZFA:0001181 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! skin epidermis [Term] @@ -252119,7 +250552,6 @@ name: dermal superficial region synonym: "stratum laxum" EXACT [TAO:0001183] xref: ZFA:0001183 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] @@ -252129,7 +250561,6 @@ def: "A layer of collagen fibrils present in the imature integument in an acellu synonym: "primary dermal stroma" EXACT [TAO:0001186] xref: ZFA:0001186 is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] @@ -252138,9 +250569,7 @@ name: Weberian apparatus def: "Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear." [ZFIN:curator] comment: Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. xref: ZFA:0001188 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:0001130 ! vertebral column [Term] @@ -252204,7 +250633,6 @@ def: "Islands of eosinic cells found on the lateroventral surface of the kidney. xref: ZFA:0001200 is_a: UBERON:0000479 ! tissue is_a: UBERON:0002368 ! endocrine gland -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element relationship: capable_of_part_of GO:0055074 ! calcium ion homeostasis relationship: only_in_taxon NCBITaxon:7898 {xref="http://jeb.biologists.org/content/177/1/243.short"} ! Actinopterygii @@ -252261,6 +250689,7 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001223 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001915 ! basibranchial 1 element intersection_of: UBERON:2001915 ! basibranchial 1 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -252274,6 +250703,7 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001224 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001916 ! basibranchial 2 element intersection_of: UBERON:2001916 ! basibranchial 2 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -252287,6 +250717,7 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001225 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001917 ! basibranchial 3 element intersection_of: UBERON:2001917 ! basibranchial 3 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -252300,6 +250731,7 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001226 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001918 ! basibranchial 4 element intersection_of: UBERON:2001918 ! basibranchial 4 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -252558,8 +250990,6 @@ relationship: composed_primarily_of UBERON:2001547 ! abdominal scute id: UBERON:2001256 name: lateral floor plate xref: ZFA:0001256 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003079 ! floor plate @@ -252568,8 +250998,6 @@ id: UBERON:2001257 name: medial floor plate def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] xref: ZFA:0001257 -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003079 ! floor plate @@ -252643,7 +251071,6 @@ id: UBERON:2001277 name: anterior chamber swim bladder def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001277 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder @@ -252652,7 +251079,6 @@ id: UBERON:2001278 name: posterior chamber swim bladder def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001278 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder @@ -252877,7 +251303,6 @@ relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary id: UBERON:2001342 name: presumptive intervening zone xref: ZFA:0001342 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:2007023 ! posterior neural keel @@ -252885,7 +251310,6 @@ relationship: part_of UBERON:2007023 ! posterior neural keel id: UBERON:2001343 name: telencephalon diencephalon boundary xref: ZFA:0001343 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001890 ! forebrain @@ -252894,7 +251318,6 @@ id: UBERON:2001347 name: stratum fibrosum et griseum superficiale xref: ZFA:0001347 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -252902,7 +251325,6 @@ id: UBERON:2001348 name: stratum marginale xref: ZFA:0001348 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -252910,7 +251332,6 @@ id: UBERON:2001349 name: stratum opticum xref: ZFA:0001349 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -252918,7 +251339,6 @@ id: UBERON:2001352 name: stratum periventriculare xref: ZFA:0001352 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -252931,7 +251351,6 @@ id: UBERON:2001357 name: alar plate midbrain xref: ZFA:0001357 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001891 ! midbrain [Term] @@ -252963,7 +251382,6 @@ def: "Anatomical cluster that consists of supraneural 2 bone and supraneural 3 b synonym: "neural complex" BROAD [] synonym: "Weberian supraneural" EXACT [TAO:0001363] xref: ZFA:0001363 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:2001188 ! Weberian apparatus @@ -253020,7 +251438,6 @@ id: UBERON:2001382 name: epibranchial bone uncinate process def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] xref: ZFA:0001382 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000658 ! epibranchial bone @@ -253030,7 +251447,6 @@ name: epithelial mesenchymal boundary of regenerating fin/limb def: "An epithelial-mesenchymal boundary that is part of a regenerating fin/limb." [OBOL:automatic] xref: TAO:0001388 xref: ZFA:0001388 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012437 ! epithelial-mesenchymal boundary intersection_of: UBERON:0012437 ! epithelial-mesenchymal boundary intersection_of: part_of UBERON:2001269 ! regenerating fin/limb @@ -253050,7 +251466,6 @@ synonym: "wound epithelium of fin" EXACT [] xref: EFO:0003682 xref: TAO:0001389 xref: ZFA:0001389 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:2001269 ! regenerating fin/limb @@ -253124,7 +251539,6 @@ name: post-Weberian supraneural def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians." [ZFIN:curator] xref: ZFA:0001397 is_a: UBERON:2000442 ! supraneural bone -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2001403 @@ -253142,7 +251556,6 @@ name: preethmoid bone def: "Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [ZFIN:curator] xref: ZFA:0001404 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0011242 ! ethmoid cartilage relationship: part_of UBERON:0002241 ! chondrocranium @@ -253194,8 +251607,6 @@ synonym: "epioccipital" EXACT [TAO:0001412] synonym: "epioccipitals" EXACT PLURAL [TAO:0001412] xref: ZFA:0001412 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0002241 ! chondrocranium @@ -253308,7 +251719,6 @@ id: UBERON:2001430 name: pneumatic duct def: "A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001430 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001043 ! esophagus @@ -253316,8 +251726,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:2001431 name: primitive olfactory epithelium xref: ZFA:0001431 +is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0003050 ! olfactory placode [Term] @@ -253339,7 +251749,6 @@ id: UBERON:2001437 name: ductus communicans def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001437 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0006860 ! swim bladder @@ -253348,6 +251757,7 @@ id: UBERON:2001450 name: apical ectodermal ridge pelvic fin def: "Apical ectodermal ridge that is part of the pelvic fin." [ZFIN:curator] xref: ZFA:0001450 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004356 ! apical ectodermal ridge relationship: develops_from UBERON:0005422 ! pelvic appendage apical ectodermal ridge relationship: part_of UBERON:0000152 ! pelvic fin @@ -253359,7 +251769,6 @@ def: "A plate-like chondrogenic condensation within the pectoral fin, which subd synonym: "fin plate cartilage" EXACT [TAO:0001456] xref: ZFA:0001456 is_a: UBERON:0007390 ! pectoral appendage cartilage tissue -relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia [Term] id: UBERON:2001457 @@ -253811,7 +252220,6 @@ relationship: part_of UBERON:2001254 ! abdominal scute series id: UBERON:2001548 name: intercalarium ascending process xref: ZFA:0001602 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000525 ! intercalarium @@ -253947,7 +252355,6 @@ id: UBERON:2001577 name: premaxilla ascending process def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] xref: ZFA:0001577 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -253957,7 +252364,6 @@ name: anterior dorsomedial process of autopalatine def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [ZFIN:curator] xref: ZFA:0001578 is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:2000620 ! autopalatine [Term] @@ -254109,7 +252515,6 @@ def: "Process that is the upper portion of the maxilla that rests on the posteri comment: Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 synonym: "maxilla ascending arm" EXACT [TAO:0001603] synonym: "maxilla upper arm" EXACT [TAO:0001603] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -254119,7 +252524,6 @@ name: lateral ethmoid palatine process def: "Lateral bony projection proximal to lateral ethmoid-palatine joint, and located anterior to orbital region and posterior to olfactory region." [TAO:wd] synonym: "antorbital process" RELATED [TAO:0001604] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000226 ! lateral ethmoid bone [Term] @@ -254140,9 +252544,7 @@ id: UBERON:2001607 name: basipterygoid process of parasphenoid def: "Process that is the paired process of the parasphenoid that articulates with the suspensorium." [TAO:wd] synonym: "basipterygoid process" EXACT [TAO:0001607] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004745 ! parasphenoid [Term] @@ -254161,7 +252563,6 @@ relationship: connects UBERON:2000620 ! autopalatine id: UBERON:2001609 name: pharyngobranchial 2 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 2 bone." [TAO:wd] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001250 ! pharyngobranchial 2 bone @@ -254171,7 +252572,6 @@ name: quadrate dorsal process def: "An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. synonym: "quadrate superior arm" EXACT [TAO:0001610] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone @@ -254180,7 +252580,6 @@ id: UBERON:2001611 name: quadrate posterodorsal process def: "Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone @@ -254227,7 +252626,6 @@ id: UBERON:2001615 name: sphenotic spine def: "Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired." [TAO:GA_TG] synonym: "sphenotic process" EXACT [TAO:0001615] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000587 ! sphenotic @@ -254237,7 +252635,6 @@ name: lateral ethmoid wing def: "Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin." [TAO:wd] comment: Synonym of lateral ethmoid wing: lateral ethmoid ventral wing (characiforms). synonym: "lateral ethmoid ventral wing" EXACT [TAO:0001616] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000226 ! lateral ethmoid bone @@ -254282,8 +252679,6 @@ id: UBERON:2001623 name: type 1 odontode def: "Odontode that is attached to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001622 ! odontode relationship: part_of UBERON:0008907 ! dermal bone @@ -254402,7 +252797,6 @@ id: UBERON:2001649 name: basihyal tooth def: "Tooth that is attached to the basihyal tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001648 ! basihyal tooth plate relationship: part_of UBERON:2001648 ! basihyal tooth plate @@ -254420,7 +252814,6 @@ id: UBERON:2001651 name: pharyngobranchial 2 tooth def: "Tooth that is attached to the pharyngobranchial 2 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate relationship: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate @@ -254438,7 +252831,6 @@ id: UBERON:2001653 name: pharyngobranchial 3 tooth def: "Tooth that is part of the pharyngobranchial 3 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate relationship: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate @@ -254456,7 +252848,6 @@ id: UBERON:2001655 name: upper pharyngeal 4 tooth def: "Tooth that is attached to the upper pharyngeal 4 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate relationship: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate @@ -254473,7 +252864,6 @@ id: UBERON:2001657 name: upper pharyngeal 5 tooth def: "Tooth that is attached to the upper pharyngeal 5 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate relationship: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate @@ -254493,7 +252883,6 @@ id: UBERON:2001659 name: upper pharyngeal tooth def: "Tooth that is attached to the upper pharyngeal tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001658 ! upper pharyngeal tooth plate relationship: part_of UBERON:2001658 ! upper pharyngeal tooth plate @@ -254503,7 +252892,6 @@ id: UBERON:2001660 name: basibranchial tooth def: "Tooth that is part of the basibranchial tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001661 ! basibranchial tooth plate relationship: part_of UBERON:2001661 ! basibranchial tooth plate @@ -254530,7 +252918,6 @@ id: UBERON:2001663 name: basibranchial 4 tooth def: "Tooth that is attached to the basibranchial 4 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001662 ! basibranchial 4 tooth plate relationship: part_of UBERON:2001662 ! basibranchial 4 tooth plate @@ -254548,7 +252935,6 @@ id: UBERON:2001665 name: basibranchial 2 tooth def: "Tooth that is attached to the basibranchial 2 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth -is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001664 ! basibranchial 2 tooth plate relationship: part_of UBERON:2001664 ! basibranchial 2 tooth plate @@ -254600,7 +252986,6 @@ def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid co synonym: "cornu" EXACT [TAO:0001675] synonym: "cornua" EXACT PLURAL [TAO:0001675] synonym: "cornuae" EXACT PLURAL [TAO:0001675] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone @@ -254666,7 +253051,6 @@ relationship: connects UBERON:0011238 ! mesethmoid bone id: UBERON:2001681 name: cornu mesial process def: "Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu." [TAO:pem] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001675 ! mesethmoid cornu @@ -254716,7 +253100,6 @@ is_a: UBERON:0008846 ! skeletal ligament id: UBERON:2001688 name: palatine cartilage def: "Cartilage that is separate from and anterior to the pterygoquadrate cartilage." [TAO:wd] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage @@ -254724,7 +253107,6 @@ relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage id: UBERON:2001689 name: pterygoquadrate cartilage def: "Pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage." [TAO:wd] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton @@ -254733,7 +253115,6 @@ relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton id: UBERON:2001690 name: anterior cartilage of palatine def: "Anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage @@ -254741,7 +253122,6 @@ relationship: develops_from UBERON:2001688 ! palatine cartilage id: UBERON:2001691 name: posterior cartilage of palatine def: "Posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage @@ -254827,6 +253207,7 @@ name: basibranchial 5 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001919 ! basibranchial 5 element intersection_of: UBERON:2001919 ! basibranchial 5 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -255083,7 +253464,6 @@ id: UBERON:2001733 name: mesethmoid ventral diverging lamella def: "Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones." [TAO:wd] comment: Reference: Weitzman 1962. -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone @@ -255094,7 +253474,6 @@ def: "Process that is the posteriorly oriented, paired projection of the basipte synonym: "ischiac process" EXACT [TAO:0001734] synonym: "ischiatic process" EXACT [TAO:0001734] synonym: "posterior pelvic process" EXACT [http://hdl.handle.net/10088/11710] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -255111,7 +253490,6 @@ id: UBERON:2001737 name: coracoid foramen def: "Foramen that is located in the coracoid." [TAO:wd] xref: ZFA:0005426 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0004743 ! coracoid bone @@ -255178,7 +253556,6 @@ def: "Bony projection located on the anteroventral region of the mesethmoid whic comment: Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). synonym: "mesethmoid lateral wing" EXACT [TAO:0001747] synonym: "premaxillary articular process" EXACT [TAO:0001747] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone @@ -255223,7 +253600,6 @@ name: pre-narial cartilage def: "The pre-narial cartilage is a cartilage that is located anterior to the anterior naris." [TAO:wd] comment: Chen 1994. is_a: UBERON:0003932 ! cartilage element of chondrocranium -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011156 ! facial skeleton [Term] @@ -255456,7 +253832,6 @@ def: "Process that is part of the supraoccipital. It is a posteriorly directed a comment: The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone @@ -255520,7 +253895,6 @@ is_a: UBERON:2002261 ! dorsal fin spine id: UBERON:2001792 name: pharyngobranchial 3 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 3." [TAO:wd] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001252 ! pharyngobranchial 3 bone @@ -255529,7 +253903,6 @@ id: UBERON:2001793 name: pharyngobranchial 4 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 4." [TAO:wd] synonym: "infrapharyngobranchial 4 bone uncinate process" EXACT [TAO:0001793] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001636 ! pharyngobranchial 4 bone @@ -255636,7 +254009,6 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw id: UBERON:2001806 name: intracranial diverticulum of swimbladder def: "An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear." [TAO:wd] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0006860 ! swim bladder @@ -255733,7 +254105,6 @@ name: middle nuchal plate def: "Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates." [TAO:wd] synonym: "median nuchal plate" EXACT [TAO:0001817] synonym: "second nuchal plate" EXACT [TAO:0001817] -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001815 ! nuchal plate @@ -255768,7 +254139,6 @@ id: UBERON:2001820 name: posterior nuchal plate def: "Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate." [TAO:wd] synonym: "third nuchal plate" EXACT [TAO:0001820] -is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001815 ! nuchal plate @@ -255780,8 +254150,6 @@ name: notochord posterior region def: "Portion of tissue that is part of the caudal fin." [TAO:wd] xref: ZFA:0001670 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002328 ! notochord relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -255816,8 +254184,6 @@ synonym: "branche ventrale de l'urohyal" EXACT [PSPUB:0000164] synonym: "processus hyo-pelvien" EXACT [PSPUB:0000139] synonym: "urohyal lateral lamella" EXACT [TAO:0001825] synonym: "urohyal ventral wing" EXACT [TAO:0001825] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000452 ! urohyal @@ -255825,8 +254191,6 @@ relationship: part_of UBERON:2000452 ! urohyal id: UBERON:2001826 name: urohyal median process def: "Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal." [TAO:wd] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000452 ! urohyal @@ -256042,7 +254406,6 @@ name: hyomandibular condyle for the opercle def: "Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle." [TAO:wd] synonym: "opercular process of hyomandibular" EXACT [TAO:0001855] is_a: UBERON:0009979 ! condyle -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011607 ! hyomandibular cartilage relationship: part_of UBERON:0011608 ! hyomandibular element @@ -256058,9 +254421,7 @@ relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton id: UBERON:2001857 name: hyoidean artery def: "An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch." [TAO:wd] -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004467 ! musculature of pharynx relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill @@ -256181,7 +254542,6 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:2001871 name: Weberian ossicle set def: "Anatomical cluster that consists of the Weberian ossicles." [TAO:wd] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:2001188 ! Weberian apparatus @@ -256326,7 +254686,6 @@ name: interhyal element def: "Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] synonym: "stylohyal" RELATED [] synonym: "stylohyal element" EXACT [] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton @@ -256334,7 +254693,6 @@ relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton id: UBERON:2001893 name: hypobranchial element def: "Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element." [TAO:wd] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -256370,7 +254728,6 @@ relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton id: UBERON:2001898 name: ceratobranchial element def: "Skeletal element that is bilaterally paired and forms part of the ventral branchial arches." [TAO:wd] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002103 ! ceratobranchial series @@ -256409,7 +254766,6 @@ id: UBERON:2001904 name: epibranchial element def: "Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element." [TAO:wd] synonym: "epibranchial elements" EXACT PLURAL [TAO:0001904] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002102 ! epibranchial series @@ -256442,7 +254798,6 @@ id: UBERON:2001909 name: pharyngobranchial element def: "Skeletal element of the branchial arches located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial element" EXACT [] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -256528,7 +254883,6 @@ id: UBERON:2001921 name: adipose eyelid def: "Surface structure that is a fleshy membrane covering part of the eye." [TAO:wd] is_a: UBERON:0003102 ! surface structure -relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia relationship: part_of UBERON:0000033 ! head [Term] @@ -256582,9 +254936,7 @@ is_a: UBERON:0004704 ! bone fossa id: UBERON:2001929 name: epioccipital posterior process def: "Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus." [TAO:wd] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2001412 ! epiotic [Term] @@ -257054,7 +255406,6 @@ name: epibranchial arborescent organ def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. synonym: "suprabranchial organ" EXACT [TAO:0001990] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx @@ -257140,8 +255491,6 @@ name: posterior cleithral process def: "Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired." [TAO:wd] synonym: "humeral process" EXACT [TAO:0001999] synonym: "postcleithral process" EXACT [TAO:0001999] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004741 ! cleithrum @@ -257154,9 +255503,6 @@ synonym: "posterior denticle of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior serration of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior thorn of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior tooth of pectoral fin spine" EXACT [TAO:0002000] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine @@ -257169,9 +255515,6 @@ synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002001] synonym: "pectoral fin spine anterior dentation" RELATED [TAO:0002001] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine @@ -257184,9 +255527,6 @@ synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002002] synonym: "pectoral fin spine anterior distal serration" RELATED [TAO:0002002] -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine @@ -257199,8 +255539,6 @@ synonym: "posterior denticle of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior serration of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior thorn of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior tooth of dorsal fin spine 2" EXACT [TAO:0002003] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001790 ! dorsal fin spine 2 @@ -257214,7 +255552,6 @@ synonym: "anterior thorn of dorsal fin spine 2" EXACT [TAO:0002004] synonym: "anterior tooth of dorsal fin spine 2" EXACT [TAO:0002004] synonym: "dorsal fin spine 2 anterior dentation" EXACT [TAO:0002004] is_a: UBERON:0004529 ! anatomical projection -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2002005 @@ -257247,7 +255584,6 @@ relationship: develops_from UBERON:4300263 ! supraneural 4 cartilage id: UBERON:2002008 name: neural lamina def: "Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired." [TAO:wd] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001190 ! Weberian vertebra @@ -257255,7 +255591,6 @@ relationship: part_of UBERON:2001190 ! Weberian vertebra id: UBERON:2002009 name: medial cartilage of palatine def: "Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint." [TAO:wd] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage @@ -257279,7 +255614,6 @@ id: UBERON:2002012 name: dentary foramen def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:wd] xref: ZFA:0005427 -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0004742 ! dentary @@ -257289,7 +255623,6 @@ name: ascending limb of ceratobranchial 5 bone def: "Process that is the dorsally directed portion of ceratobranchial 5 bone." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:2002014 ! ascending limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone @@ -257298,7 +255631,6 @@ id: UBERON:2002014 name: ascending limb of ceratobranchial 5 cartilage def: "Process that is the dorsally directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage @@ -257323,7 +255655,6 @@ name: anterior limb of ceratobranchial 5 bone def: "Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone." [TAO:wd] comment: This term applies to cypriniform fishes. is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:2002018 ! anterior limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone @@ -257332,7 +255663,6 @@ id: UBERON:2002018 name: anterior limb of ceratobranchial 5 cartilage def: "Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: This term applies to cypriniform fishes. -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage @@ -257363,9 +255693,7 @@ id: UBERON:2002021 name: ascending process of the parasphenoid def: "Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic." [TAO:wd] synonym: "ascending ramus of the parasphenoid" EXACT [TAO:0002021] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004745 ! parasphenoid [Term] @@ -257381,7 +255709,6 @@ id: UBERON:2002023 name: second preethmoid bone def: "Endochondral bone found between the preethmoid and maxilla." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011164 ! neurocranium bone is_a: UBERON:4300286 ! second preethmoid element relationship: develops_from UBERON:4300285 ! second preethmoid cartilage @@ -257445,7 +255772,6 @@ relationship: develops_from UBERON:2202029 ! pectoral fin proximal radial cartil id: UBERON:2002030 name: ventral keel of coracoid def: "Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired." [TAO:wd] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004743 ! coracoid bone @@ -257539,7 +255865,6 @@ name: posterior limb of parapophysis 4 def: "Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] synonym: "posterior branch of parapophysis 4" EXACT [TAO:0002043] synonym: "posterior wing of parapophysis 4" EXACT [TAO:0002043] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001971 ! parapophysis 4 @@ -257575,7 +255900,6 @@ def: "Fine ridge on surface of scale, often parallel to the circumference of sca synonym: "circuli" EXACT PLURAL [TAO:0002051] synonym: "crétule" EXACT [PSPUB:0000149] xref: ZFA:0005499 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0007380 ! dermal scale @@ -257638,9 +255962,7 @@ synonym: "branchial opening" EXACT [TAO:0002057] synonym: "gill aperture" EXACT [TAO:0002057] synonym: "opercular opening" EXACT [TAO:0002057] xref: ZFA:0005389 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space -relationship: never_in_taxon NCBITaxon:40674 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Mammalia relationship: part_of UBERON:0001042 ! chordate pharynx [Term] @@ -257728,7 +256050,6 @@ relationship: part_of UBERON:4000167 ! caudal fin skeleton id: UBERON:2002069 name: distal cartilage of posterior process of basipterygium def: "Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly." [TAO:wd] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001539 ! basipterygium cartilage relationship: part_of UBERON:2001734 ! posterior process of basipterygium @@ -257741,7 +256062,6 @@ synonym: "internal anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "internal arm of the basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior process of basipterygium" EXACT [TAO:0002070] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -257749,7 +256069,6 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:2002071 name: distal cartilage of internal anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium." [TAO:wd] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -257759,7 +256078,6 @@ id: UBERON:2002072 name: middle anterior process of basipterygium def: "Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially." [TAO:wd] synonym: "middle anterior arm of basipterygium" EXACT [TAO:0002072] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -257767,7 +256085,6 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:2002073 name: distal cartilage of middle anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium." [TAO:wd] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -257780,7 +256097,6 @@ synonym: "external anterior arm of basipterygium" EXACT [TAO:0002074] synonym: "external arm of basipterygium" EXACT [TAO:0002074] synonym: "lateral anterior process of basipterygium" EXACT [TAO:0002074] synonym: "lateral pelvic process" EXACT [http://hdl.handle.net/10088/11710] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -257788,7 +256104,6 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:2002075 name: distal cartilage of external anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium." [TAO:wd] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -257798,7 +256113,6 @@ id: UBERON:2002076 name: lateral process of basipterygium def: "Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally." [TAO:wd] synonym: "posterolateral process of basipterygium" EXACT [TAO:0002076] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -257831,7 +256145,6 @@ is_a: UBERON:0002548 ! larva id: UBERON:2002080 name: spina occipitalis def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone @@ -258002,7 +256315,6 @@ name: epibranchial series def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] synonym: "epibranchials" EXACT PLURAL [TAO:0002102] is_a: BFO:0000040 ! material entity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001904 ! epibranchial element @@ -258014,7 +256326,6 @@ id: UBERON:2002103 name: ceratobranchial series def: "Anatomical cluster that consists of the ceratobranchial elements within an individual." [TAO:wd] is_a: BFO:0000040 ! material entity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001898 ! ceratobranchial element @@ -258037,7 +256348,6 @@ def: "Anatomical structure that is a subdivision of the cerebellum; it is the lo comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] synonym: "EG" EXACT [TAO:0002106] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -258049,7 +256359,6 @@ synonym: "MCN" EXACT [TAO:0002107] synonym: "medullary pacemaker nucleus" EXACT [TAO:0002107] synonym: "pacemaker nucleus" EXACT [TAO:0002107] is_a: UBERON:0002616 ! regional part of brain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002028 ! hindbrain [Term] @@ -258100,7 +256409,6 @@ is_a: UBERON:2000602 ! uroneural [Term] id: UBERON:2002116 name: epibranchial organ -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003103 ! compound organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001042 ! chordate pharynx @@ -258118,7 +256426,6 @@ id: UBERON:2002118 name: scale radius def: "Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli." [ISBN-10:0226870138] synonym: "radii" EXACT PLURAL [TAO:0002118] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007380 ! dermal scale @@ -258126,16 +256433,13 @@ relationship: part_of UBERON:0007380 ! dermal scale id: UBERON:2002119 name: dermal scale focus comment: A demarcation on the scale signfiyning the initial growth point. Requires further classification see Lagler 1947. -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0007380 ! dermal scale [Term] id: UBERON:2002120 name: orbitosphenoid septum is_a: UBERON:0003037 ! septum -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002478 ! orbitosphenoid [Term] @@ -258200,9 +256504,7 @@ name: caudal rod def: "Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage." [TAO:wd] comment: Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC\nRELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES\n(OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal\nof Vertebrate Paleontology 27(1):17-25 synonym: "hypural-opisthural rod" EXACT [TAO:0002129] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] @@ -258211,7 +256513,6 @@ name: caudal appendage def: "Multi-tissue structure that is region of the body posterior to the last anal-fin ray." [TAO:wd] comment: Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones.\nDefinition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. synonym: "caudal filament" EXACT [TAO:0002130] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -258254,7 +256555,6 @@ name: anterior swim bladder bud def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:090511-18] xref: ZFA:0005337 is_a: UBERON:0000479 ! tissue -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2002147 @@ -258371,7 +256671,6 @@ id: UBERON:2002166 name: pseudourostyle def: "An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired." [TAO:GA_TG] comment: The pseudourostyle occurs only in certain teleost subgroups. It may be well developed in certain characiforms. -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2002084 ! pleurostyle @@ -258440,8 +256739,6 @@ name: climbing fiber def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] xref: ZFA:0001711 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli @@ -258460,8 +256757,6 @@ def: "Portion of tissue that grows in from the dorsolateral wall of the otic ves synonym: "dorsal bar" RELATED [TAO:0002193] xref: ZFA:0001672 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001841 ! anterior semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal @@ -258471,7 +256766,6 @@ name: epidermal placode def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] xref: ZFA:0001703 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002025 ! stratum basale of epidermis [Term] @@ -258546,8 +256840,6 @@ id: UBERON:2002210 name: mossy fiber xref: ZFA:0001710 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli @@ -258573,9 +256865,7 @@ relationship: part_of UBERON:2001171 ! os suspensorium id: UBERON:2002215 name: otic vesicle protrusion xref: ZFA:0001715 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003051 ! ear vesicle [Term] @@ -258600,8 +256890,6 @@ name: parallel fiber synonym: "parallel fibers" EXACT PLURAL [TAO:0002218] xref: ZFA:0001713 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000394 ! molecular layer corpus cerebelli relationship: part_of UBERON:2000913 ! molecular layer valvula cerebelli @@ -258630,15 +256918,12 @@ id: UBERON:2002223 name: pillar of the semicircular canal xref: ZFA:0001717 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:2002224 name: pleuroperitoneal cavity xref: ZFA:0001656 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002323 ! coelemic cavity lumen @@ -258647,7 +256932,6 @@ id: UBERON:2002225 name: posterior pronephric duct synonym: "posterior pronephric ducts" EXACT PLURAL [TAO:0002225] xref: ZFA:0001623 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0003060 ! pronephric duct @@ -258664,7 +256948,6 @@ id: UBERON:2002229 name: presumptive atrium primitive heart tube xref: ZFA:0001721 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] @@ -258672,7 +256955,6 @@ id: UBERON:2002232 name: presumptive cardiac ventricle primitive heart tube xref: ZFA:0001720 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] @@ -258693,8 +256975,6 @@ id: UBERON:2002240 name: Purkinje cell layer corpus cerebelli xref: ZFA:0001706 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli [Term] @@ -258702,8 +256982,6 @@ id: UBERON:2002241 name: Purkinje cell layer valvula cerebelli xref: ZFA:0001709 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -258712,7 +256990,6 @@ name: scale primordium xref: ZFA:0001704 is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] @@ -258734,8 +257011,6 @@ is_a: UBERON:1500003 ! lateral line canal lumen id: UBERON:2002249 name: ctenius synonym: "ctenii" EXACT PLURAL [TAO:0002249] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013703 ! integumentary projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2002273 ! ctenoid scale @@ -258779,7 +257054,6 @@ is_a: UBERON:0000475 ! organism subdivision id: UBERON:2002257 name: premaxilla dentigerous process synonym: "premaxilla alveolar process" EXACT [TAO:0002257] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -259024,7 +257298,6 @@ def: "Dermal bone that is an unpaired, scale-like structure. Arratia, G. 2009. I comment: temporarily relabeled 'fish scute' to distinguish from reptilian scute class. To DO: reconcile definitions for the two sets of classes. synonym: "ridge scale" EXACT [TAO:0002294] is_a: UBERON:0008907 ! dermal bone -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:0002416 ! integumental system [Term] @@ -259095,10 +257368,8 @@ name: afferent lamellar arteriole synonym: "afferent lamellar arterioles" EXACT PLURAL [TAO:0005015] synonym: "AFL" EXACT [TAO:0005015] xref: ZFA:0005015 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005012 ! afferent filamental artery @@ -259129,11 +257400,9 @@ name: efferent lamellar arteriole synonym: "efferent lamellar arterioles" EXACT PLURAL [TAO:0005019] synonym: "ELA" EXACT [TAO:0005019] xref: ZFA:0005019 -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003920 ! venous blood vessel -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005018 ! efferent filamental artery @@ -259273,7 +257542,6 @@ relationship: part_of UBERON:0002201 ! vasculature of trunk id: UBERON:2005039 name: anterior lateral mesoderm xref: ZFA:0005039 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003081 ! lateral plate mesoderm @@ -259381,7 +257649,6 @@ name: bulbus arteriosus outer layer def: "Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus externa" EXACT [TAO:0005066] xref: ZFA:0005066 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004706 ! bulbus cordis @@ -259392,7 +257659,6 @@ def: "Composed of 7-10 layers of helically arranged smooth muscle cells surround synonym: "bulbus arteriosus media" EXACT [TAO:0005067] xref: ZFA:0005067 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004706 ! bulbus cordis [Term] @@ -259402,7 +257668,6 @@ def: "Composed of subendothelium with longitudinally oriented collagen, reticula synonym: "bulbus arteriosus intima" EXACT [TAO:0005068] xref: ZFA:0005068 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004706 ! bulbus cordis [Term] @@ -259410,7 +257675,6 @@ id: UBERON:2005072 name: endocardial ring xref: ZFA:0005072 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002165 ! endocardium [Term] @@ -259522,7 +257786,6 @@ def: "An elaborate set of vessels that branche off caudally from the anterior me synonym: "SBA" EXACT [TAO:0005089] xref: ZFA:0005089 is_a: UBERON:0001637 ! artery -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005093 @@ -259538,7 +257801,6 @@ id: UBERON:2005097 name: caudal fin vasculature xref: ZFA:0005097 is_a: UBERON:0007304 ! appendage vasculature -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005098 @@ -259546,7 +257808,6 @@ name: central ray artery def: "Positioned in the intraray mesenchym between the hemirays of the lepidotrichia,. Huang et al. 2003." [ZFIN:curator] xref: ZFA:0005098 is_a: UBERON:0007304 ! appendage vasculature -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005099 @@ -259554,7 +257815,6 @@ name: ray vein def: "Lie flanking and just lateral to the fin ray, in the interray mesenchyme. Huang et al. 2003." [ZFIN:curator] xref: ZFA:0005099 is_a: UBERON:0007304 ! appendage vasculature -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005100 @@ -259563,7 +257823,6 @@ def: "Vessels that travel between artery and veins or vein and vein in a single synonym: "intervessel comisures" EXACT PLURAL [TAO:0005100] xref: ZFA:0005100 is_a: UBERON:0007304 ! appendage vasculature -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005101 @@ -259572,7 +257831,6 @@ def: "Vessels that travel between veins in adjacent rays." [ZFIN:curator] synonym: "interray vessels" EXACT PLURAL [TAO:0005101] xref: ZFA:0005101 is_a: UBERON:0007304 ! appendage vasculature -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005102 @@ -259580,7 +257838,6 @@ name: presumptive median fin fold synonym: "presumptive median fin-fold" EXACT [TAO:0005102] xref: ZFA:0005102 is_a: UBERON:0006598 ! presumptive structure -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda [Term] id: UBERON:2005103 @@ -259676,7 +257933,6 @@ relationship: part_of UBERON:2005114 ! middle lateral line system id: UBERON:2005122 name: dorsal axial hypoblast xref: ZFA:0005122 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast @@ -259718,7 +257974,6 @@ name: distal epidermal cap of regenerating fin/limb def: "Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]." [ZFIN:curator] xref: TAO:0005149 xref: ZFA:0005149 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb @@ -259729,7 +257984,6 @@ def: "Layer of the wound epidermis that surrounds the blastema in the fin or lim synonym: "basal wound epidermis" EXACT [TAO:0005150] xref: TAO:0005150 xref: ZFA:0005150 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb @@ -259763,8 +258017,6 @@ synonym: "3rd lobe" EXACT [TAO:0005174] synonym: "third lobe" EXACT [TAO:0005174] xref: ZFA:0005174 is_a: UBERON:0000481 ! multi-tissue structure -is_a: UBERON:0004119 ! endoderm-derived structure -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:0002107 ! liver [Term] @@ -260317,7 +258569,6 @@ id: UBERON:2005256 name: intervillus pockets def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] xref: ZFA:0005256 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001277 ! intestinal epithelium @@ -260454,7 +258705,6 @@ name: hyomandibular foramen def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII)." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005629 is_a: UBERON:0005744 ! bone foramen -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: part_of UBERON:0011608 ! hyomandibular element creation_date: 2012-04-09T07:39:00Z @@ -260536,7 +258786,6 @@ xref: ZFA:0005316 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0005421 ! pectoral appendage apical ectodermal ridge -relationship: never_in_taxon NCBITaxon:32523 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Tetrapoda relationship: part_of UBERON:0005419 ! pectoral appendage bud [Term] @@ -260610,7 +258859,6 @@ name: posterior recess def: "Posterior protrusion of the third ventricle." [ZFIN:curator] synonym: "posterior recess of diencephalic ventricle" EXACT [TAO:0005338] xref: ZFA:0005338 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002286 ! third ventricle @@ -260654,7 +258902,6 @@ name: extrapancreatic duct def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] xref: ZFA:0005346 is_a: UBERON:0003928 ! digestive system duct -is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0007329 ! pancreatic duct [Term] @@ -260872,7 +259119,6 @@ id: UBERON:2005409 name: pars superior ear def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] xref: ZFA:0005409 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear @@ -260881,7 +259127,6 @@ id: UBERON:2005410 name: pars inferior ear def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] xref: ZFA:0005410 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear @@ -260890,8 +259135,6 @@ id: UBERON:2005411 name: common crus xref: ZFA:0005411 is_a: UBERON:0000058 ! duct -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2005409 ! pars superior ear [Term] @@ -260907,9 +259150,7 @@ id: UBERON:2005415 name: inner ear foramen def: "Foramen in the inner ear." [ZFIN:curator] xref: ZFA:0005415 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! bone foramen -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -260926,8 +259167,6 @@ synonym: "dorsorostral cluster" EXACT [TAO:0007001] synonym: "drc" EXACT [TAO:0007001] xref: ZFA:0007001 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -260956,7 +259195,6 @@ def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer synonym: "ec" EXACT [TAO:0007004] xref: ZFA:0007004 is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001905 ! pineal body [Term] @@ -261013,7 +259251,6 @@ is_a: UBERON:0005497 ! non-neural ectoderm id: UBERON:2007014 name: anterior presumptive neural plate xref: ZFA:0007014 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0007284 ! presumptive neural plate @@ -261021,7 +259258,6 @@ relationship: part_of UBERON:0007284 ! presumptive neural plate id: UBERON:2007015 name: posterior presumptive neural plate xref: ZFA:0007015 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0007284 ! presumptive neural plate @@ -261029,7 +259265,7 @@ relationship: part_of UBERON:0007284 ! presumptive neural plate id: UBERON:2007023 name: posterior neural keel xref: ZFA:0007023 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003057 ! chordal neural plate relationship: part_of UBERON:0007135 ! neural keel @@ -261065,7 +259301,7 @@ relationship: part_of UBERON:2007024 ! anterior neural keel id: UBERON:2007027 name: forebrain midbrain boundary neural keel xref: ZFA:0007027 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:0009612 ! forebrain midbrain boundary neural plate relationship: part_of UBERON:2007024 ! anterior neural keel @@ -261074,7 +259310,6 @@ relationship: part_of UBERON:2007024 ! anterior neural keel id: UBERON:2007028 name: spinal cord neural keel xref: ZFA:0007028 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2007023 ! posterior neural keel @@ -261092,7 +259327,7 @@ relationship: part_of UBERON:2007023 ! posterior neural keel id: UBERON:2007030 name: posterior neural rod xref: ZFA:0007030 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007023 ! posterior neural keel relationship: part_of UBERON:0005068 ! neural rod @@ -261119,7 +259354,7 @@ relationship: part_of UBERON:2007031 ! anterior neural rod id: UBERON:2007033 name: forebrain midbrain boundary neural rod xref: ZFA:0007033 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007027 ! forebrain midbrain boundary neural keel relationship: part_of UBERON:2007031 ! anterior neural rod @@ -261137,7 +259372,6 @@ relationship: part_of UBERON:2007031 ! anterior neural rod id: UBERON:2007035 name: spinal cord neural rod xref: ZFA:0007035 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2007030 ! posterior neural rod @@ -261155,7 +259389,7 @@ relationship: part_of UBERON:2007030 ! posterior neural rod id: UBERON:2007040 name: forebrain midbrain boundary neural tube xref: ZFA:0007040 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007033 ! forebrain midbrain boundary neural rod relationship: part_of UBERON:0003080 ! anterior neural tube @@ -261173,7 +259407,6 @@ relationship: part_of UBERON:0003080 ! anterior neural tube id: UBERON:2007042 name: spinal cord neural tube xref: ZFA:0007042 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003076 ! posterior neural tube @@ -261258,6 +259491,7 @@ synonym: "anterior pillar" EXACT [TAO:0007054] synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054] synonym: "horizontal hub" RELATED [TAO:0007054] xref: ZFA:0007054 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: develops_from UBERON:2000232 ! lateral semicircular canal primordium relationship: develops_from UBERON:2000469 ! anterior semicircular canal primordium @@ -261271,6 +259505,8 @@ synonym: "ventral bar" EXACT [TAO:0007055] synonym: "ventral pillar" EXACT [TAO:0007055] synonym: "ventral piller of the semicircular canal" EXACT [TAO:0007055] xref: ZFA:0007055 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: develops_from UBERON:2001716 ! caudal principal ray 4 relationship: part_of UBERON:0001843 ! lateral semicircular canal @@ -261353,7 +259589,6 @@ synonym: "os pelvien" RELATED [PSPUB:0000164] synonym: "pelvic bone" RELATED [TAO:0000623] synonym: "pelvic plate" RELATED [] synonym: "pubic plate" RELATED [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -261414,6 +259649,7 @@ name: pectoral fin radial element def: "Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:GA_TG] comment: There are two paired series of pectoral radial elements, the proximal and the distal ones that may have variable shapes and sizes. synonym: "pectoral actinost" RELATED [TAO:0001586] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1600006 ! paired fin radial element intersection_of: UBERON:2100271 ! radial element intersection_of: part_of UBERON:0000151 ! pectoral fin @@ -262115,7 +260351,6 @@ synonym: "processus alaris" RELATED [UBERON:3000002] synonym: "second upper labial" RELATED [UBERON:3000002] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262132,7 +260367,6 @@ synonym: "processus ascendens of premaxilla" RELATED [UBERON:3000003] synonym: "processus frontalis of premaxilla" RELATED [UBERON:3000003] synonym: "processus nasalis of premaxilla" RELATED [UBERON:3000003] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002244 ! premaxilla [Term] @@ -262147,7 +260381,6 @@ id: UBERON:3000012 name: angulosplenial coronoid process def: "Point of insertion of the adductor mandibulae musculature." [AAO:LAP] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000966 ! angulosplenial [Term] @@ -262155,7 +260388,6 @@ id: UBERON:3000015 name: anterior maxillary process def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262164,7 +260396,6 @@ name: anterior nasal wall def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP] synonym: "prenasal wall" RELATED [UBERON:3000016] synonym: "solum anterius" RELATED [UBERON:3000016] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton @@ -262172,7 +260403,6 @@ relationship: part_of UBERON:0006813 ! nasal skeleton id: UBERON:3000017 name: anterior process of pars palatina of maxilla is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004527 ! alveolar process of maxilla [Term] @@ -262181,22 +260411,18 @@ name: anterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends anteriorly towards the maxilla." [AAO:LAP] synonym: "ramus maxillaris of pterygoid" RELATED [UBERON:3000018] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:3000020 name: anterolateral process of frontoparietal -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011639 ! frontoparietal bone [Term] id: UBERON:3000022 name: antorbital process is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000400 ! pars facialis of maxilla [Term] @@ -262210,7 +260436,6 @@ synonym: "pediculus" RELATED [UBERON:3000031] synonym: "processus ascendens of palatoquadrate" RELATED [UBERON:3000031] synonym: "schlafenflugelknorpel" RELATED [UBERON:3000031] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004752 ! palatoquadrate cartilage [Term] @@ -262224,7 +260449,6 @@ name: basal process of palatoquadrate def: "Process that extends medially from the ventromedial corner of the palatoquadrate cartilage and articulates or fuses to the anterior wall of the otic capsule via the basitrabecular process." [AAO:LAP] synonym: "processus basalis" RELATED [UBERON:3000036] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: has_part UBERON:3000292 ! medial ramus of pterygoid relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -262238,7 +260462,6 @@ is_a: UBERON:3000051 ! braincase and otic capsule opening id: UBERON:3000038 name: basimandibulare is_a: UBERON:0000479 ! tissue -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] @@ -262286,7 +260509,6 @@ id: UBERON:3000059 name: capsular process def: "Narrow process of the skeletal support that projects forward." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria [Term] @@ -262306,7 +260528,6 @@ name: cartilago ectochoanalis def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262314,7 +260535,6 @@ id: UBERON:3000069 name: cartilago infranarina is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262336,7 +260556,6 @@ id: UBERON:3000079 name: cartilago retronarina is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262380,21 +260599,18 @@ def: "Anterior-lateral projections from the corpus of the hyoid apparatus." [PHE comment: Found in Anura (frogs) only. synonym: "anterior cornua" EXACT [] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:3000110 name: crista contacta def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus [Term] id: UBERON:3000111 name: crista dentalis of maxilla -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004527 ! alveolar process of maxilla @@ -262402,7 +260618,6 @@ relationship: part_of UBERON:0004527 ! alveolar process of maxilla id: UBERON:3000112 name: crista dentalis of premaxilla synonym: "dental ridge of premaxilla" RELATED [UBERON:3000112] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0034898 ! alveolar ridge of premaxilla @@ -262411,13 +260626,11 @@ id: UBERON:3000113 name: crista intermedia def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000115 name: crista lateralis of premaxilla -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -262427,7 +260640,6 @@ name: crista subnasalis def: "Ventral crest of the paries nasi." [AAO:LAP] synonym: "subnasal crest" RELATED [UBERON:3000117] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262435,7 +260647,6 @@ id: UBERON:3000118 name: crista supraorbitalis def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262451,7 +260662,6 @@ name: dilatatio alaris def: "Flange that extends ventrally from about the middle portion of the margo mandibularis." [AAO:LAP] synonym: "ventral flange of anterior ramus of pterygoid" RELATED [UBERON:3000131] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000280 ! margo mandibularis of pterygoid [Term] @@ -262464,8 +260674,6 @@ is_obsolete: true id: UBERON:3000141 name: endolymphatic system is_a: UBERON:0000467 ! anatomical system -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -262474,7 +260682,6 @@ name: extremitas anterior def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP] synonym: "anterior ramus" RELATED [UBERON:3000155] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011167 ! septomaxilla bone [Term] @@ -262537,7 +260744,6 @@ is_a: UBERON:3000316 ! nasal opening [Term] id: UBERON:3000177 name: flange of quadratojugal -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011267 ! quadratojugal bone @@ -262551,7 +260757,6 @@ synonym: "otostapes" RELATED [UBERON:3000178] synonym: "pars otica columellae" RELATED [UBERON:3000178] synonym: "pseudooperculum" RELATED [UBERON:3000178] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000408 ! pars media plectri [Term] @@ -262642,7 +260847,6 @@ is_a: UBERON:0002376 ! cranial muscle id: UBERON:3000226 name: hyolaryngeal complex def: "Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0008895 ! splanchnocranium @@ -262655,7 +260859,6 @@ synonym: "processus prenasalis inferior" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262665,7 +260868,6 @@ def: "Larval lower jaw lies anterior to Meckels cartilage." [AAO:EJS] synonym: "infralabial cartilage" RELATED [UBERON:3000237] synonym: "mentomeckelian cartilage" RELATED [UBERON:3000237] is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton @@ -262675,14 +260877,12 @@ name: lamella alaris def: "Dorsal plate of the squamosal." [AAO:LAP] synonym: "horizontal arm of squamosal" RELATED [UBERON:3000254] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001695 ! squamous part of temporal bone [Term] id: UBERON:3000255 name: lamina anterior of pars facialis is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000400 ! pars facialis of maxilla [Term] @@ -262690,7 +260890,6 @@ id: UBERON:3000259 name: lamina inferior def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP] synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule @@ -262698,7 +260897,6 @@ relationship: part_of UBERON:0006332 ! nasal capsule id: UBERON:3000260 name: lamina nariochoanalis def: "Free, dorsal margin of the lamina inferior." [AAO:LAP] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule @@ -262707,7 +260905,6 @@ id: UBERON:3000263 name: lamina precerebralis def: "Posterior face of septum nasi." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262716,7 +260913,6 @@ name: lamina superior def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP] synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262731,7 +260927,6 @@ id: UBERON:3000280 name: margo mandibularis of pterygoid def: "Ventrally directed margin that connects the anterior and posterior rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] @@ -262739,7 +260934,6 @@ id: UBERON:3000281 name: margo orbitalis of maxilla def: "Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -262747,7 +260941,6 @@ id: UBERON:3000282 name: margo orbitalis of pterygoid def: "Margin that connects the anterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] @@ -262755,7 +260948,6 @@ id: UBERON:3000283 name: margo orbitalis of squamosal def: "Anterior margin of the squamosal that takes part in the formation of the orbit." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000254 ! lamella alaris [Term] @@ -262763,7 +260955,6 @@ id: UBERON:3000284 name: margo tympanicus of pterygoid def: "Margin that connects the posterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] @@ -262782,7 +260973,6 @@ id: UBERON:3000290 name: medial inferior prenasal cartilage is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262796,7 +260986,6 @@ id: UBERON:3000292 name: medial ramus of pterygoid def: "In a triradiate pterygoid, the process that extends medially towards the otic capsule." [AAO:LAP] synonym: "ramus interior of pterygoid" RELATED [UBERON:3000292] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010389 ! pterygoid bone @@ -262806,13 +260995,11 @@ name: median prenasal process def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP] synonym: "processus prenasalis medius" RELATED [UBERON:3000294] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:3000295 name: median symphysis -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region @@ -262845,7 +261032,6 @@ synonym: "dorsal process" RELATED [UBERON:3000329] synonym: "lamina obliqua" RELATED [UBERON:3000329] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -262893,7 +261079,6 @@ is_obsolete: true id: UBERON:3000363 name: otic ligament is_a: UBERON:0008846 ! skeletal ligament -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -262902,13 +261087,11 @@ id: UBERON:3000364 name: otic plate of pterygoid def: "Osseous expansion of the posterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:3000365 name: otic process -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -262918,7 +261101,6 @@ name: otic ramus of squamosal def: "Ramus (process) that extends medially toward the otic capsule." [AAO:LAP] synonym: "posterior ramus" RELATED [UBERON:3000367] synonym: "ramus paroticus" RELATED [UBERON:3000367] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -262946,7 +261128,6 @@ is_obsolete: true [Term] id: UBERON:3000375 name: palatine process of the pars facialis of the maxilla -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -262960,7 +261141,6 @@ replaced_by: UBERON:0012073 [Term] id: UBERON:3000380 name: palatoquadrate articular process -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -262973,15 +261153,12 @@ synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [ synonym: "processus lingularis" RELATED [UBERON:3000381] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000384 name: parasagittal crest is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011639 ! frontoparietal bone [Term] @@ -262990,8 +261167,6 @@ name: cultriform process def: "Process that extends anteriorly from the orbitotemporal region." [AAO:LAP] synonym: "pars medialis" RELATED [UBERON:3000386] synonym: "rostrum" RELATED [UBERON:3000386] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid @@ -263000,8 +261175,6 @@ id: UBERON:3000387 name: subotic alae def: "Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally." [AAO:LAP] synonym: "processus lateralis" RELATED [UBERON:3000387] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid @@ -263018,15 +261191,12 @@ name: paries nasi def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000393 name: pars amphibiorum is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] @@ -263034,15 +261204,12 @@ id: UBERON:3000394 name: pars articularis of mandibular arch def: "Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003107 ! Meckel's cartilage [Term] id: UBERON:3000395 name: pars basilaris is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] @@ -263071,29 +261238,24 @@ synonym: "hyostapes" RELATED [UBERON:3000399] synonym: "medio-stapedial" RELATED [UBERON:3000399] synonym: "pars quadrata columellae" RELATED [UBERON:3000399] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000443 ! plectral apparatus [Term] id: UBERON:3000400 name: pars facialis of maxilla is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:3000401 name: pars facialis of maxillopalatine is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000288 ! maxillopalatine [Term] id: UBERON:3000405 name: pars inferior of labyrinth is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -263103,14 +261265,12 @@ def: "Plate-like structure that lies in the fenestra ovalis. It arises within th synonym: "operculum auris" RELATED [UBERON:3000406] synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000443 ! plectral apparatus [Term] id: UBERON:3000408 name: pars media plectri is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000443 ! plectral apparatus [Term] @@ -263133,8 +261293,6 @@ id: UBERON:3000428 name: perilymphatic system def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [PHENOSCAPE] is_a: UBERON:0001032 ! sensory system -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -263156,9 +261314,7 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton [Term] id: UBERON:3000433 name: pineal foramen -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! bone foramen -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011639 ! frontoparietal bone [Term] @@ -263166,7 +261322,6 @@ id: UBERON:3000434 name: planum antorbitale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263174,7 +261329,6 @@ id: UBERON:3000437 name: planum conchale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263182,7 +261336,6 @@ id: UBERON:3000438 name: planum internasale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263192,7 +261345,6 @@ def: "Vertical plate of cartilage that is fused posterodorsally to the oblique c synonym: "pars terminalis" RELATED [UBERON:3000440] synonym: "terminal plate" RELATED [UBERON:3000440] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263200,7 +261352,6 @@ id: UBERON:3000441 name: planum triangulare def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263214,7 +261365,6 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton id: UBERON:3000446 name: posterior condyle is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000515 ! pseudoangular [Term] @@ -263222,21 +261372,18 @@ id: UBERON:3000448 name: posterior maxillary process def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000449 name: posterior maxillary process dorsal process is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000448 ! posterior maxillary process [Term] id: UBERON:3000450 name: posterior mental process is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] @@ -263244,13 +261391,11 @@ id: UBERON:3000451 name: posterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation." [AAO:LAP] is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:3000453 name: posterolateral vomerine process -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -263259,7 +261404,6 @@ id: UBERON:3000454 name: postnasal wall def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP] synonym: "posterior wall of nasal capsule" BROAD [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton @@ -263267,7 +261411,6 @@ relationship: part_of UBERON:0006813 ! nasal skeleton id: UBERON:3000459 name: prearticular coronoid process def: "Point of insertion of the masticatory musculature." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011637 ! prearticular bone @@ -263281,7 +261424,6 @@ replaced_by: UBERON:2001626 [Term] id: UBERON:3000467 name: preorbital process of the pars facialis of the maxilla -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -263304,7 +261446,6 @@ synonym: "processus ascendens columellae" RELATED [UBERON:3000486] synonym: "processus dorsalis columellae" RELATED [UBERON:3000486] synonym: "processus superior columellae" RELATED [UBERON:3000486] synonym: "suprastapediale" RELATED [UBERON:3000486] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000399 ! pars externa plectri @@ -263313,7 +261454,6 @@ id: UBERON:3000492 name: processus infrafenestralis def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP] synonym: "dorsal crest" RELATED [UBERON:3000492] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus @@ -263321,7 +261461,6 @@ relationship: part_of UBERON:3000645 ! corpus id: UBERON:3000493 name: processus internus of pseudoangular synonym: "processus internus" BROAD [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000515 ! pseudoangular @@ -263329,7 +261468,6 @@ relationship: part_of UBERON:3000515 ! pseudoangular id: UBERON:3000494 name: processus lingualis of pterygoid def: "Dorsolateral process of the of the medial ramus of the pterygoid." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000292 ! medial ramus of pterygoid @@ -263337,7 +261475,6 @@ relationship: part_of UBERON:3000292 ! medial ramus of pterygoid id: UBERON:3000500 name: processus posterior of maxilla def: "Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -263351,7 +261488,6 @@ is_a: UBERON:0004530 ! bony projection [Term] id: UBERON:3000509 name: processus suprafenestralis -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus @@ -263359,7 +261495,6 @@ relationship: part_of UBERON:3000645 ! corpus id: UBERON:3000512 name: processus zygomatico-maxillaris def: "Posterodorsal extension of the maxilla by which it establishes contact with the squamosal." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -263375,7 +261510,6 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] id: UBERON:3000516 name: pseudobasal process -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -263412,7 +261546,6 @@ replaced_by: UBERON:0010389 id: UBERON:3000523 name: pterygoid process of palatoquadrate def: "Process that extends anteriorly from the anterolateral margin of the palatoquadrate and articulates or synchondrotically fuses to the posterior end of the posterior maxillary process." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -263420,13 +261553,11 @@ relationship: part_of UBERON:0004752 ! palatoquadrate cartilage id: UBERON:3000524 name: pterygoquadrate is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003108 ! suspensorium [Term] id: UBERON:3000527 name: quadrate process of palatoquadrate -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -263434,15 +261565,12 @@ relationship: part_of UBERON:0004752 ! palatoquadrate cartilage id: UBERON:3000538 name: recessus fenestrae ovalis is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000428 ! perilymphatic system [Term] id: UBERON:3000539 name: recessus marsupiatus of premaxilla def: "Is a recess on the surface of the premaxilla near to the base of the pars facialis." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla @@ -263450,7 +261578,6 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:3000540 name: recessus vaginiformis def: "Is a space on the interior surface of the pars facialis of the maxilla." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla @@ -263459,14 +261586,12 @@ id: UBERON:3000543 name: retroarticular process def: "Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior." [AAO:LAP] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000515 ! pseudoangular [Term] id: UBERON:3000547 name: rostral process def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [PHENOSCAPE] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001681 ! nasal bone relationship: part_of UBERON:0001703 ! neurocranium @@ -263477,8 +261602,6 @@ id: UBERON:3000560 name: septum semicircularium anterior def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -263486,8 +261609,6 @@ id: UBERON:3000561 name: septum semicircularium laterale def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -263495,14 +261616,11 @@ id: UBERON:3000562 name: septum semircularium posterior def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:3000563 name: seydels palatal process -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000068 ! cartilago ectochoanalis @@ -263511,7 +261629,6 @@ id: UBERON:3000565 name: skeletal support for eminentia olfactoria def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263522,15 +261639,12 @@ synonym: "nasal floor" RELATED [UBERON:3000569] synonym: "planum basale" RELATED [UBERON:3000569] synonym: "solum nasale" RELATED [UBERON:3000569] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000570 name: spatium sacculare is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000428 ! perilymphatic system [Term] @@ -263563,14 +261677,12 @@ synonym: "stapes" RELATED [UBERON:3000580] synonym: "stelidium" RELATED [UBERON:3000580] synonym: "stilus columellare" RELATED [UBERON:3000580] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000408 ! pars media plectri [Term] id: UBERON:3000581 name: sulcus dentalis of maxilla def: "Groove located between the pars dentalis and the bases of the maxillary teeth." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla @@ -263578,7 +261690,6 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:3000582 name: sulcus dentalis of premaxilla def: "Groove located between the pars dentalis and the bases of the premaxillary teeth." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla @@ -263586,7 +261697,6 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:3000583 name: sulcus for Meckels cartilage def: "A groove on the palatoquadrate that is occupied by the Meckel's cartilage." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000012 ! angulosplenial coronoid process @@ -263596,7 +261706,6 @@ name: superior prenasal cartilage def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263617,8 +261726,6 @@ replaced_by: UBERON:0004747 [Term] id: UBERON:3000590 name: supraorbital flange -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011639 ! frontoparietal bone @@ -263632,7 +261739,6 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton [Term] id: UBERON:3000597 name: symphysis maxillaris -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region @@ -263649,7 +261755,6 @@ id: UBERON:3000601 name: tectum nasi def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP] synonym: "tectum nasale" RELATED [UBERON:3000601] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton @@ -263669,7 +261774,6 @@ id: UBERON:3000619 name: tympanosquamosal def: "Central, funnel-shaped, ossified portion of the tympanic annulus fused to the squamosal bone." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003108 ! suspensorium [Term] @@ -263678,21 +261782,18 @@ name: ventral ramus of squamosal def: "Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal." [AAO:LAP] synonym: "processus posterolateralis" RELATED [UBERON:3000628] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001695 ! squamous part of temporal bone [Term] id: UBERON:3000634 name: vomerine canal is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer [Term] id: UBERON:3000639 name: zygomatic ramus of squamosal def: "Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -263719,7 +261820,6 @@ def: "Rod-shaped process that extends caudally from the inferior edge of the pla synonym: "lingular process" RELATED [UBERON:3000644] synonym: "processus lingularis" BROAD [] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -263740,14 +261840,12 @@ id: UBERON:3000646 name: margo libera def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000645 ! corpus [Term] id: UBERON:3000647 name: crista interna def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000492 ! processus infrafenestralis @@ -263755,7 +261853,6 @@ relationship: part_of UBERON:3000492 ! processus infrafenestralis id: UBERON:3000648 name: crista praeopercularis def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000408 ! pars media plectri @@ -263764,7 +261861,6 @@ id: UBERON:3000649 name: anterior process of vomer def: "Process that extends anterolaterally toward the maxilla-premaxilla articulation." [AAO:LAP] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer [Term] @@ -263773,7 +261869,6 @@ name: processus frontalis of maxilla def: "Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct." [AAO:LAP] synonym: "processus frontalis" BROAD [] synonym: "processus praeorbitalis of the pars facialis" RELATED [UBERON:3000650] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -263782,7 +261877,6 @@ id: UBERON:3000651 name: lamina anterior of maxilla def: "Most anterior part of the maxilla, which is in contact with the premaxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -263791,7 +261885,6 @@ name: fossa maxillaris def: "Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina." [AAO:LAP] comment: Alternative more fish orientated definition: A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. [PHENOSCAPE] synonym: "maxillary saddle" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0002397 ! maxilla @@ -263800,7 +261893,6 @@ id: UBERON:3000653 name: pars glenoidalis of quadratojugal def: "Portion of the quadratojugal that makes contact dorsally with the distal portion of the squamosal." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011267 ! quadratojugal bone [Term] @@ -263808,7 +261900,6 @@ id: UBERON:3000654 name: pars jugalis def: "Anterior part of the quadratojugal that is in contact with the processus posterior of the maxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011267 ! quadratojugal bone [Term] @@ -263816,7 +261907,6 @@ id: UBERON:3000655 name: processus dorsalis of lamella alaris def: "Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it." [AAO:LAP] synonym: "processus dorsailis" BROAD [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -263825,7 +261915,6 @@ id: UBERON:3000656 name: processus posterodorsalis of lamella alaris def: "Posterior process of the lamella alaris." [AAO:LAP] synonym: "processus posterodorsalis" BROAD [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -263834,7 +261923,6 @@ id: UBERON:3000657 name: dentigerous process def: "Tooth-bearing process of the vomer." [AAO:LAP] synonym: "torus dentigerous" RELATED [UBERON:3000657] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -263843,7 +261931,6 @@ id: UBERON:3000658 name: prechoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process." [AAO:LAP] synonym: "processus choanalis anterior" RELATED [UBERON:3000658] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -263852,7 +261939,6 @@ id: UBERON:3000659 name: postchoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process." [AAO:LAP] synonym: "processus choanalis posterior" RELATED [UBERON:3000659] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -263861,14 +261947,12 @@ id: UBERON:3000660 name: margo choanalis def: "Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer [Term] id: UBERON:3000661 name: crista vomeri def: "Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi." [AAO:LAP] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -263877,8 +261961,6 @@ id: UBERON:3000662 name: processus posterior of parasphenoid def: "Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae." [AAO:LAP] synonym: "processus posterior" BROAD [] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid @@ -263886,7 +261968,6 @@ relationship: part_of UBERON:0004745 ! parasphenoid id: UBERON:3000663 name: parahyoid is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263894,7 +261975,6 @@ id: UBERON:3000664 name: hyoid plate def: "Azygous or paired bone that occurs on the ventral surface of the hyoid plate." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263902,7 +261982,6 @@ id: UBERON:3000667 name: pars reuniens def: "Area of fusion of the ceratohyals." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005884 ! hyoid arch skeleton [Term] @@ -263910,7 +261989,6 @@ id: UBERON:3000668 name: hyoglossal sinus def: "Is the space along the anterior edge of the hyoid plate between the hyale and through which passes the hyoglossus muscle as it passes dorsally into the tongue." [PHENOSCAPE] comment: A anuran (frog) term -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010272 ! hyoid apparatus relationship: part_of UBERON:3000664 ! hyoid plate @@ -263918,7 +261996,6 @@ relationship: part_of UBERON:3000664 ! hyoid plate [Term] id: UBERON:3000670 name: anterior process of hyoid apparatus -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -263929,7 +262006,6 @@ def: "Processes that flank the hyales laterally and extend anterolaterally from synonym: "processus alaris" RELATED [UBERON:3000671] synonym: "processus anterolateralis" RELATED [UBERON:3000671] synonym: "processus lateralis anterior" RELATED [UBERON:3000671] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000664 ! hyoid plate @@ -263938,7 +262014,6 @@ id: UBERON:3000672 name: posterolateral process def: "Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000664 ! hyoid plate [Term] @@ -263948,7 +262023,6 @@ def: "Cartilaginous, paired processes that extend posterolaterally from the post synonym: "cornua posteriores" RELATED [UBERON:3000673] synonym: "hyoid" RELATED [UBERON:3000673] is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000664 ! hyoid plate [Term] @@ -263956,8 +262030,6 @@ id: UBERON:3000676 name: bronchial process def: "Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring." [AAO:LAP] synonym: "processus trachealis" RELATED [UBERON:3000676] -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage @@ -263965,8 +262037,6 @@ relationship: part_of UBERON:0002375 ! cricoid cartilage id: UBERON:3000677 name: lateral process of cricoid cartilage synonym: "lateral process" BROAD [] -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage @@ -263975,8 +262045,6 @@ id: UBERON:3000678 name: esophageal process def: "Median process located on the posterior end of the cricoid cartilage." [AAO:LAP] synonym: "spina oesophagea" RELATED [UBERON:3000678] -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage @@ -263986,7 +262054,6 @@ name: manubrium of hyale def: "Proximal section of the hyale." [AAO:LAP] synonym: "processus anteriores" RELATED [UBERON:3000680] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000101 ! hyale [Term] @@ -264013,7 +262080,6 @@ name: processus confluens def: "Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi." [AAO:LAP] synonym: "processus alaris" RELATED [UBERON:3000687] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000101 ! hyale [Term] @@ -264021,8 +262087,6 @@ id: UBERON:3000688 name: prominentia apicalis dorsalis def: "Anterior end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis anterior" RELATED [UBERON:3000688] -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011769 ! cartilaginous projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001740 ! arytenoid cartilage @@ -264032,8 +262096,6 @@ id: UBERON:3000689 name: prominentia apicalis ventralis def: "Posterior (cardiac) end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis posterior" RELATED [UBERON:3000689] -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011769 ! cartilaginous projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001740 ! arytenoid cartilage @@ -264042,7 +262104,6 @@ relationship: part_of UBERON:0001740 ! arytenoid cartilage id: UBERON:3000692 name: pedicel def: "Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra @@ -264051,7 +262112,6 @@ id: UBERON:3000694 name: atlantal cotyle def: "Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle." [AAO:Francis_1934] synonym: "cavitas glenoidalis" RELATED [UBERON:3000694] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -264080,7 +262140,6 @@ relationship: part_of UBERON:0002412 ! vertebra id: UBERON:3000707 name: pleurapophysis def: "Paired processes that represent the rib attachments to the vertebra plus the ribs." [AAO:Duellman_and_Trueb_1994] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra @@ -264150,7 +262209,6 @@ is_a: UBERON:0001075 ! bony vertebral centrum id: UBERON:3000727 name: haemal arch lamina def: "Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina." [AAO:Pugener_2002] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006065 ! hemal arch @@ -264158,7 +262216,6 @@ relationship: part_of UBERON:0006065 ! hemal arch id: UBERON:3000728 name: nucal keel def: "Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature." [AAO:Duellman_and_Trueb_1994] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -264172,7 +262229,6 @@ is_a: UBERON:0010276 ! space in vertebral column id: UBERON:3000735 name: mid-dorsal keel def: "Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch." [AAO:Pugener_2002] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003861 ! neural arch @@ -264190,7 +262246,6 @@ replaced_by: UBERON:0002498 id: UBERON:3000743 name: sacral condyle def: "Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003690 ! fused sacrum @@ -264199,7 +262254,6 @@ id: UBERON:3000744 name: urostyle cotyle def: "Anterior, single or paired concave facets for articulation with the sacral condyle(s)." [AAO:LAP] synonym: "fossa condyloidea ossis coccygei" RELATED [UBERON:3000744] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle @@ -264207,7 +262261,6 @@ relationship: part_of UBERON:0003106 ! urostyle id: UBERON:3000745 name: webbing of bone in vertebral column def: "In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle." [AAO:Pugener_and_Maglia_2008] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001130 ! vertebral column @@ -264216,7 +262269,6 @@ id: UBERON:3000746 name: urostyle ridge def: "Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches." [AAO:Maglia_et_al_2007] synonym: "crista ossi coccygei" RELATED [UBERON:3000746] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle @@ -264235,7 +262287,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000752 name: pars acromialis def: "Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula @@ -264244,7 +262295,6 @@ id: UBERON:3000753 name: pars glenoidalis of scapula def: "Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa." [AAO:LAP] synonym: "glenoid head of scapula" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula @@ -264259,7 +262309,6 @@ id: UBERON:3000756 name: crista dorsalis humeri def: "Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it." [AAO:LAP] synonym: "crista dorsalis" RELATED [UBERON:3000756] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -264279,7 +262328,6 @@ synonym: "interclavicle" RELATED [UBERON:3000759] synonym: "prezonal element" RELATED [UBERON:3000759] synonym: "prezonal sternum" RELATED [UBERON:3000759] synonym: "sternum superior" RELATED [UBERON:3000759] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010363 ! endochondral element is_a: UBERON:3000936 ! zonal element @@ -264304,7 +262352,6 @@ id: UBERON:3000763 name: epicoracoid bridge def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum." [AAO:LAP] synonym: "procoracoid bridge" RELATED [UBERON:3000763] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid @@ -264324,7 +262371,6 @@ id: UBERON:3000773 name: ilial ridge def: "Longitudinal crest on the dorsal side of the shaft of the ilium." [AAO:LAP] synonym: "ala ossis ilei" RELATED [UBERON:3000773] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000774 ! ilial shaft @@ -264333,7 +262379,6 @@ id: UBERON:3000774 name: ilial shaft def: "Anterior rod that articulates with the sacrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001273 ! ilium [Term] @@ -264353,7 +262398,6 @@ is_a: UBERON:3000755 ! pectoral girdle opening id: UBERON:3000777 name: epicoracoid horn def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid @@ -264375,7 +262419,6 @@ is_a: UBERON:3000755 ! pectoral girdle opening id: UBERON:3000780 name: incisura coracoidea def: "Notch that separates the cartilaginous regions of the procoracoid and coracoid." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula @@ -264384,7 +262427,6 @@ id: UBERON:3000783 name: fovea capitis of humerus def: "Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments." [AAO:LAP] comment: Not to be confused with the fovea capitis of the femur -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0006801 ! proximal head of humerus @@ -264394,7 +262436,6 @@ name: ulnar condyle def: "Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball." [AAO:LAP] synonym: "medial condyle" RELATED [UBERON:3000784] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000976 ! humerus [Term] @@ -264403,14 +262444,12 @@ name: trochlear groove of humerus def: "Furrow between the humeral head and the ulnar condyle." [AAO:LAP] synonym: "trochlear sulcus of humerus" EXACT [] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:3000786 name: fossa cubitalis ventralis def: "Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus @@ -264419,7 +262458,6 @@ id: UBERON:3000787 name: collum antibrachii def: "In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006715 ! radio-ulna relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -264427,9 +262465,7 @@ relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton id: UBERON:3000792 name: anterior ramus of cleithrum def: "Subdivision of the cleithrum that extends along the anterior edge of the suprascapula." [AAO:LAP] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -264460,7 +262496,6 @@ is_a: UBERON:0003861 ! neural arch id: UBERON:3000798 name: presacral shield def: "Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates." [AAO:Trueb_1973] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009568 ! trunk region of vertebral column @@ -264468,7 +262503,6 @@ relationship: part_of UBERON:0009568 ! trunk region of vertebral column id: UBERON:3000799 name: cartilago paraglenoidalis def: "Strip of cartilage that separates the coracoid from the scapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264484,7 +262518,6 @@ relationship: part_of UBERON:0001092 ! vertebral bone 1 id: UBERON:3000801 name: caput glenoidale def: "Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum @@ -264492,7 +262525,6 @@ relationship: part_of UBERON:0001075 ! bony vertebral centrum id: UBERON:3000802 name: fossa glenoidalis def: "Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum @@ -264500,7 +262532,6 @@ relationship: part_of UBERON:0001075 ! bony vertebral centrum id: UBERON:3000803 name: sulcus articularis lateralis def: "In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -264508,7 +262539,6 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000804 name: sulcus articularis medialis def: "In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -264516,7 +262546,6 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000805 name: carina proximalis def: "In a zygapophysis that has ridges and sulci, the proximal ridge." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -264524,7 +262553,6 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000806 name: carina medialis def: "In a zygapophysis that has ridges and sulci, the medial ridge." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -264532,7 +262560,6 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000807 name: carina distalis def: "In a zygapophysis that has ridges and sulci, the distal ridge." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -264540,7 +262567,6 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000808 name: parasagittal processes def: "Paired, posteriorly directed process at the posterior margin of each neural arch lamina." [AAO:Cannatella_1985] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003861 ! neural arch @@ -264548,7 +262574,6 @@ relationship: part_of UBERON:0003861 ! neural arch id: UBERON:3000809 name: accessory articulation def: "Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum." [AAO:Cannatella_1985] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002412 ! vertebra @@ -264556,7 +262581,6 @@ relationship: part_of UBERON:0002412 ! vertebra id: UBERON:3000810 name: fissura sagittalis def: "Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches." [AAO:Maglia_et_al_2007] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000746 ! urostyle ridge @@ -264566,14 +262590,12 @@ name: glenoid end of clavicle def: "Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it." [AAO:LAP] synonym: "extremitas glenoidalis" RELATED [UBERON:3000811] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:3000813 name: sulcus pro cartilagine praecoracoidealis def: "Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001105 ! clavicle bone @@ -264597,7 +262619,6 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:3000816 name: margo fenestralis def: "Anterior margin of the coracoid, which forms the posterior edge of the pectoral fenestra." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004743 ! coracoid bone @@ -264605,7 +262626,6 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:3000817 name: margo posterior def: "Posterior margin of the coracoid." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004743 ! coracoid bone @@ -264613,7 +262633,6 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:3000818 name: margo anterior of scapula def: "Anterior margin of the scapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264621,7 +262640,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000819 name: margo clavicularis def: "Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264629,7 +262647,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000820 name: margo posterior of scapula def: "Posterior margin of the scapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264637,7 +262654,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000821 name: margo suprascapularis def: "Superior margin of the scapula, which articulates with the suprascapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264645,7 +262661,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000822 name: pars suprascapularis def: "Superior portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264653,7 +262668,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000823 name: sinus interglenoidalis def: "Notch or indentation between the pars glenoidalis and pars acromialis of the scapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula @@ -264661,7 +262675,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000824 name: tenuitas cristaeformis def: "Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -264669,7 +262682,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000825 name: crista longitudinalis scapula def: "Longitudinal ridge on the medial (inner) face of the scapula." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006849 ! scapula @@ -264678,8 +262690,6 @@ id: UBERON:3000827 name: margo anterior of cleithrum def: "Anterior margin of the anterior ramus of the cleithrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -264687,8 +262697,6 @@ id: UBERON:3000828 name: margo posterior of cleithrum def: "Posterior margin of the posterior ramus of the cleithrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -264696,8 +262704,6 @@ id: UBERON:3000829 name: margo scapularis def: "Lateral margin of the suprascapula, which articulates with the scapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -264705,16 +262711,12 @@ id: UBERON:3000830 name: margo vertebralis def: "Medial margin of the suprascapula, which lies dorsal to the vertebral column." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:3000831 name: spina acromioidea def: "Small process of the lamina recurvata that extends laterally toward the scapular-suprascapular articulation." [AAO:LAP] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004741 ! cleithrum @@ -264723,15 +262725,12 @@ id: UBERON:3000832 name: anterior lamina recurvata def: "Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:3000833 name: sinus dorsalis def: "Notch or indentation between the anterior and posterior rami of the cleithrum." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004741 ! cleithrum @@ -264739,16 +262738,13 @@ relationship: part_of UBERON:0004741 ! cleithrum id: UBERON:3000834 name: posterior lamina recurvata def: "Portion of the posterior ramus of the cleithrum that invests the posterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:3000836 name: crista lateralis humeri def: "Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -264756,7 +262752,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:3000837 name: crista medialis humeri def: "Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -264764,7 +262759,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:3000839 name: crista radii def: "Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone @@ -264772,7 +262766,6 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:3000840 name: capitulum of radius def: "Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001423 ! radius bone @@ -264787,7 +262780,6 @@ replaced_by: UBERON:3000840 id: UBERON:3000842 name: capitulum ulnae def: "Small eminence on the distal articular head of the ulna." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001424 ! ulna @@ -264796,7 +262788,6 @@ id: UBERON:3000844 name: sulcus longitudinalis def: "In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006715 ! radio-ulna [Term] @@ -264804,7 +262795,6 @@ id: UBERON:3000846 name: element Y of fore mesopodium def: "Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009880 ! carpal skeleton [Term] @@ -264818,7 +262808,6 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:3000859 name: foramen perforans carpi def: "Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:3000856 ! intercalary element of fore digit @@ -264826,7 +262815,6 @@ relationship: part_of UBERON:3000856 ! intercalary element of fore digit id: UBERON:3000862 name: pubo-ischium def: "Composite element formed by the fusion of the ischium and pubis." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: has_fused_element UBERON:0001274 ! ischium @@ -264838,14 +262826,12 @@ id: UBERON:3000865 name: epileon def: "Dorsal extremity of the ilial shaft, which remains cartilaginous." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft [Term] id: UBERON:3000866 name: agger limitans anterior of ilium def: "Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006802 ! acetabular rim @@ -264854,7 +262840,6 @@ id: UBERON:3000867 name: agger limitans anterior of ischium def: "Shelf-like expansion of the ischium that forms the posterior border of the acetabulum." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium [Term] @@ -264872,7 +262857,6 @@ name: ilial protuberance def: "Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum." [AAO:LAP] synonym: "dorsal protuberance" RELATED [UBERON:3000869] synonym: "tuber superior" RELATED [UBERON:3000869] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000774 ! ilial shaft @@ -264882,7 +262866,6 @@ name: preacetabular expansion def: "Ventral portion of the ilial corpus, located anteroventral to the acetabulum." [AAO:LAP] synonym: "pars descendens ilei" RELATED [UBERON:3000870] synonym: "ventral acetabular expansion" RELATED [UBERON:3000870] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0010747 ! body of ilium @@ -264891,7 +262874,6 @@ id: UBERON:3000871 name: fossula tuberis superioris def: "Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0010747 ! body of ilium [Term] @@ -264899,7 +262881,6 @@ id: UBERON:3000872 name: collum ilei def: "Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0010747 ! body of ilium [Term] @@ -264907,14 +262888,12 @@ id: UBERON:3000873 name: pars cylindriformis ilei def: "Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft [Term] id: UBERON:3000874 name: crista ischii def: "Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -264922,7 +262901,6 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:3000875 name: spina pelvis posterior def: "Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -264930,7 +262908,6 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:3000876 name: spina pelvis anterior def: "Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010747 ! body of ilium @@ -264939,14 +262916,12 @@ id: UBERON:3000877 name: intumescentia bilateralis inferior def: "Small protuberance on the ischium, located close to its posteroventral margin." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:3000878 name: intumescentia bilateralis superior def: "Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -264955,14 +262930,12 @@ id: UBERON:3000879 name: incisura terminalis def: "Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:3000880 name: crista hypertrophica ischium def: "Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -264970,7 +262943,6 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:3000882 name: interilial region def: "Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -264979,7 +262951,6 @@ id: UBERON:3000883 name: recessus coccygealis def: "Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft [Term] @@ -264987,7 +262958,6 @@ id: UBERON:3000884 name: epipubis def: "Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -265007,7 +262977,6 @@ synonym: "cartilago epipubes" RELATED [UBERON:3000886] synonym: "cartilago marsupial" RELATED [UBERON:3000886] synonym: "cartilago ypsiloidea" RELATED [UBERON:3000886] synonym: "cartilago ypsiloides" RELATED [UBERON:3000886] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -265017,7 +262986,6 @@ id: UBERON:3000894 name: femoral ridge def: "Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft." [AAO:LAP] synonym: "crista femoris" RELATED [UBERON:3000894] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -265031,7 +262999,6 @@ is_obsolete: true id: UBERON:3000896 name: foveal depression def: "Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0006767 ! head of femur @@ -265039,7 +263006,6 @@ relationship: part_of UBERON:0006767 ! head of femur id: UBERON:3000898 name: trochanteric crest def: "Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -265047,7 +263013,6 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:3000903 name: tibial crest def: "Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000979 ! tibia @@ -265056,7 +263021,6 @@ id: UBERON:3000904 name: apophysis distalis of tibiofibula def: "Swelling on the extensor surface of the distal head of the tibiofibula." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -265064,7 +263028,6 @@ id: UBERON:3000905 name: caput ossis cruris def: "Proximal head of the tibiofibula that articulates with the distal head of the femur." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -265072,7 +263035,6 @@ id: UBERON:3000906 name: sulcus pro musculo extensori cruris brevis def: "Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -265080,7 +263042,6 @@ id: UBERON:3000907 name: eminentia arcuata def: "Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side)." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -265088,7 +263049,6 @@ id: UBERON:3000908 name: sulcus distalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -265096,7 +263056,6 @@ id: UBERON:3000909 name: sulcus proximalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -265108,7 +263067,6 @@ is_obsolete: true id: UBERON:3000911 name: foramen nutritium exterius def: "Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula." [AAO:LAP] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0006714 ! tibiofibula @@ -265116,7 +263074,6 @@ relationship: part_of UBERON:0006714 ! tibiofibula id: UBERON:3000915 name: spatium intertarsale def: "Separation of the tibiale and fibulare along their longitudinal axia." [AAO:LAP] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004454 ! tarsal region @@ -265125,7 +263082,6 @@ id: UBERON:3000916 name: apophysis proximalis def: "Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -265133,7 +263089,6 @@ id: UBERON:3000917 name: apophysis distalis of tibiale fibulare def: "Swelling on the extensor surface of the distal compound head of the tibiale and fibulare." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -265148,7 +263103,6 @@ id: UBERON:3000922 name: prehallux skeleton def: "One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux." [AAO:LAP] synonym: "prehallux" BROAD [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: part_of UBERON:0012136 ! prehallux @@ -265166,7 +263120,6 @@ id: UBERON:3000934 name: foramen perforans tarsi def: "Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle." [AAO:LAP] is_a: UBERON:0004111 ! anatomical conduit -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -265240,9 +263193,7 @@ id: UBERON:3000948 name: articular process def: "Paired processes located on the anterior end of the cricoid cartilage." [AAO:LAP] synonym: "processus articularis anterior" RELATED [UBERON:3000948] -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002375 ! cricoid cartilage [Term] @@ -265250,8 +263201,6 @@ id: UBERON:3000949 name: posterior ramus of cleithrum def: "Laminar subdivision of the cleithrum that extends along the ventral (lateral) midbody of the suprascapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -265264,7 +263213,6 @@ synonym: "os triquetum" RELATED [UBERON:3000950] synonym: "sternum" RELATED [UBERON:3000950] synonym: "urohyal" RELATED [UBERON:3000950] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -265272,7 +263220,6 @@ id: UBERON:3000951 name: anterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -265280,7 +263227,6 @@ id: UBERON:3000952 name: posterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -265296,7 +263242,6 @@ id: UBERON:3000954 name: hypobranchial I def: "Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -265305,7 +263250,6 @@ name: ceratobranchial I def: "Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] synonym: "epibranchial" RELATED [UBERON:3000955] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -265313,7 +263257,6 @@ id: UBERON:3000956 name: hypobranchial II def: "Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV." [AAO:Duellman_and_Trueb_1994] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -265429,7 +263372,6 @@ id: UBERON:3000998 name: suprarostral cartilage def: "Larval upper jaws articulate with trabecular horns." [AAO:EJS] is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton @@ -265627,7 +263569,6 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:3010061 name: anterior quadratocranial commissure def: "Cartilage that bridges palatoquadrate to ethmoid region." [AAO:EJS] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -265655,7 +263596,6 @@ id: UBERON:3010069 name: intermedium (fore) def: "Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium." [AAO:EJS] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009880 ! carpal skeleton [Term] @@ -265709,7 +263649,6 @@ is_a: UBERON:0010890 ! pelvic complex muscle [Term] id: UBERON:3010079 name: upper eyelid protuberances -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001712 ! upper eyelid @@ -265761,7 +263700,6 @@ is_a: UBERON:0010890 ! pelvic complex muscle [Term] id: UBERON:3010091 name: upper lip protuberances -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001834 ! upper lip @@ -265770,7 +263708,6 @@ id: UBERON:3010092 name: basitrabecular process def: "A process of the otic capsule that will bridge to the palatoquadrate basal process." [AAO:EJS] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4200139 ! palatoquadrate element [Term] @@ -265784,7 +263721,6 @@ relationship: part_of UBERON:3000977 ! body external integument structure id: UBERON:3010094 name: quadratoethmoid process def: "Process that projects from anterior margin of commissure as site of attachment for quadratoethmoid ligament." [AAO:EJS] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3010061 ! anterior quadratocranial commissure @@ -265881,7 +263817,6 @@ id: UBERON:3010118 name: quadrato-orbital commissure def: "Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate." [AAO:EJS] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4200139 ! palatoquadrate element [Term] @@ -265959,7 +263894,6 @@ id: UBERON:3010138 name: trabecular horn def: "Anterior extensions." [AAO:curator] synonym: "trabecular horns" RELATED [UBERON:3010138] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011241 ! ethmoid region @@ -265975,7 +263909,6 @@ id: UBERON:3010144 name: odontoids def: "Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth." [AAO:EJS] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001710 ! lower jaw region [Term] @@ -266157,7 +264090,6 @@ id: UBERON:3010194 name: mediale def: "A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1." [AAO:EJS] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -266171,7 +264103,6 @@ relationship: located_in UBERON:0001707 ! nasal cavity id: UBERON:3010197 name: lateral recess def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001707 ! nasal cavity @@ -266211,7 +264142,6 @@ id: UBERON:3010205 name: postminimus def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -266288,7 +264218,6 @@ name: Nobelian rod def: "Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle." [AAO:EJS, http://orcid.org/0000-0002-6601-2165, http://purl.obolibrary.org/obo/uberon/tracker/200] synonym: "Nobelian bone" RELATED [] synonym: "Nobelian element" RELATED [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element @@ -266309,7 +264238,6 @@ is_a: UBERON:3000972 ! head external integument structure [Term] id: UBERON:3010243 name: ventricular musculature -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002082 ! cardiac ventricle @@ -266335,7 +264263,6 @@ is_a: UBERON:0008811 ! intromittent organ [Term] id: UBERON:3010262 name: capitulum of radio-ulna -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006715 ! radio-ulna @@ -266748,7 +264675,6 @@ relationship: part_of UBERON:0008897 ! fin [Term] id: UBERON:3010392 name: mesonephric early proximal tubule -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule @@ -266758,7 +264684,6 @@ name: mesonephric late distal segment def: "The site of bicarbonate resorption in the adult kidney. It is equivalent to the convoluted distal segment of metanephric nephrons." [Xenbase] synonym: "DT1" EXACT [UBERON:3010393] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000083 ! mesonephric tubule [Term] @@ -266769,7 +264694,6 @@ synonym: "opisthonephros" RELATED [UBERON:3010394] synonym: "proximal straight segment" RELATED [UBERON:3010394] synonym: "proximal tubule 3" EXACT [UBERON:3010394] synonym: "PT3" EXACT [UBERON:3010394] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule @@ -266817,7 +264741,6 @@ is_obsolete: true [Term] id: UBERON:3010431 name: archenteron floor -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron @@ -266825,7 +264748,6 @@ relationship: part_of UBERON:0004735 ! archenteron id: UBERON:3010432 name: archenteron roof synonym: "gastrocoel roof" EXACT [UBERON:3010432] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron @@ -266886,7 +264808,6 @@ is_a: UBERON:0004879 ! marginal zone of embryo [Term] id: UBERON:3010455 name: blastopore lip -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000100 ! blastopore @@ -266909,28 +264830,24 @@ name: suprarostral ala synonym: "ala" BROAD [] synonym: "alae" RELATED PLURAL [] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000998 ! suprarostral cartilage [Term] id: UBERON:3010463 name: animal cap synonym: "animal ectoderm" RELATED [UBERON:3010463] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:3010464 name: animal cap inner layer -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap [Term] id: UBERON:3010465 name: animal cap outer layer -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap @@ -266939,7 +264856,6 @@ id: UBERON:3010489 name: muscular artery def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001070 ! external carotid artery relationship: supplies UBERON:3010654 ! rectus cervicis @@ -266949,7 +264865,6 @@ name: lateral pretrosal artery def: "Part of the internal carotid which supplies blood to the ear and branches to two additional arteries." [AAO:BJB] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0020550 ! auricular blood vessel relationship: part_of UBERON:0001532 ! internal carotid artery relationship: supplies UBERON:0001690 ! ear @@ -266960,7 +264875,6 @@ name: mandibular artery def: "Part of lateral pretrosal artery which supplies blood to the roof of the mouth." [AAO:BJB] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3010494 ! lateral pretrosal artery relationship: supplies UBERON:0007375 ! roof of mouth @@ -267073,7 +264987,6 @@ is_a: UBERON:3000051 ! braincase and otic capsule opening id: UBERON:3010528 name: articular process of palatoquadrate is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004752 ! palatoquadrate cartilage [Term] @@ -267081,7 +264994,6 @@ id: UBERON:3010529 name: ovisac alt_id: UBERON:3010782 def: "Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles." [AAO:BJB] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! ovary @@ -267106,7 +265018,6 @@ id: UBERON:3010541 name: median pars intermedia def: "Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores." [AAO:BJB] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis [Term] @@ -267157,7 +265068,6 @@ replaced_by: CL:0000222 [Term] id: UBERON:3010557 name: triangular process -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3010138 ! trabecular horn @@ -267169,7 +265079,6 @@ is_a: UBERON:0011648 ! jaw muscle [Term] id: UBERON:3010559 name: retroarticular process of the palatoquadrate -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:4200139 ! palatoquadrate element @@ -267177,7 +265086,6 @@ relationship: part_of UBERON:4200139 ! palatoquadrate element id: UBERON:3010560 name: anterior process of the palatoquadrate is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4200139 ! palatoquadrate element [Term] @@ -267226,7 +265134,6 @@ is_a: UBERON:0004740 ! basibranchial bone id: UBERON:3010584 name: mandibular arch neural crest def: "Anterior most migratory stream of cranial neural crest." [AAO:EJS] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0003099 ! cranial neural crest @@ -267255,7 +265162,6 @@ relationship: part_of UBERON:0003099 ! cranial neural crest id: UBERON:3010589 name: cloacal papilla def: "A small, ridge-like projection from the antero-ventral wall of the cloacal chamber." [AAO:BMZ] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000162 ! cloaca @@ -267310,7 +265216,6 @@ replaced_by: UBERON:0012451 id: UBERON:3010613 name: laryngo-tracheal chamber def: "Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid." [AAO:BMZ] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001737 ! larynx @@ -267468,7 +265373,6 @@ relationship: part_of UBERON:0000348 ! ophthalmic nerve id: UBERON:3010653 name: ramus nasalis medialis def: "Ramule of ophthalmic nerve (see also ramus nasalis lateralis). First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000348 ! ophthalmic nerve @@ -267536,7 +265440,6 @@ relationship: part_of UBERON:0001645 ! trigeminal nerve id: UBERON:3010671 name: ramule palatonasalis def: "Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve." [AAO:EJS] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000377 ! maxillary nerve @@ -267603,7 +265506,6 @@ is_a: UBERON:0010891 ! pectoral complex muscle id: UBERON:3010693 name: ramus posterior profundus of V3 def: "In the adult anuran, this innervates the muscles levator mandibulare internus and longus." [AAO:EJS] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000375 ! mandibular nerve @@ -267724,7 +265626,6 @@ is_obsolete: true [Term] id: UBERON:3010719 name: dilated medial process of metacarpal IV -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 @@ -267732,7 +265633,6 @@ relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 id: UBERON:3010720 name: ramus hyomandibularis def: "The posttrematic branch of the facial nerve, both motor and sensory in function." [AAO:CAM] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001647 ! facial nerve @@ -267765,7 +265665,6 @@ is_a: UBERON:0010891 ! pectoral complex muscle id: UBERON:3010726 name: ramus muscularis of glossopharyngeus nerve def: "Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I." [AAO:EJS] -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0000479 ! tissue relationship: innervates UBERON:3010659 ! subarcualis rectus I @@ -267808,18 +265707,14 @@ is_a: UBERON:0010891 ! pectoral complex muscle id: UBERON:3010735 name: ramus anterior of CN VIII def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: UBERON:3010736 name: ramus posterior of CN VIII def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001648 ! vestibulocochlear nerve [Term] @@ -267903,7 +265798,6 @@ is_a: UBERON:0010890 ! pelvic complex muscle id: UBERON:3010750 name: descending branch of the vagus nerve def: "Major branch of the vagus supplying parasympathetic innervation to viscera." [AAO:EJS] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000011 ! parasympathetic nervous system relationship: part_of UBERON:0001759 ! vagus nerve @@ -267912,7 +265806,6 @@ relationship: part_of UBERON:0001759 ! vagus nerve id: UBERON:3010751 name: ramus muscularis of vagus nerve def: "Motor nervous branch of the vagus innervating m. subarcualis rectus I." [AAO:CAM] -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0000479 ! tissue relationship: innervates UBERON:3010659 ! subarcualis rectus I @@ -267927,7 +265820,6 @@ is_obsolete: true id: UBERON:3010754 name: ramus recurrens def: "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx." [AAO:EJS] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001759 ! vagus nerve @@ -268035,7 +265927,6 @@ id: UBERON:3010790 name: muscle rectus abdominis superficialis def: "A component of the rectus abdominal muscle that is some taxa." [PHENOSCAPE] is_a: UBERON:0002461 ! anterior abdominal wall muscle -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002382 ! rectus abdominis muscle [Term] @@ -268044,7 +265935,6 @@ name: musculus rectus abdominis profundus def: "A component of the rectus abdominal muscle that is some taxa (see comment) forms a disctinct and separate muscle." [PHENOSCAPE] comment: In salamanders (Caudata) the m. rectus abdominis profundus is sometimes continuous with the m. rectus cervicis profundus. In extreme cases (family Plethodontidae) represents an undivided muscle that arises from the psoterior border of the ischium that proceds uninterrupted to the tongue pad. is_a: UBERON:0002461 ! anterior abdominal wall muscle -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002382 ! rectus abdominis muscle [Term] @@ -268098,7 +265988,6 @@ is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) [Term] id: UBERON:3010802 name: courtship gland -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3010604 ! cranial glands relationship: part_of UBERON:0001003 ! skin epidermis @@ -268141,7 +266030,6 @@ is_a: UBERON:0002358 ! peritoneum id: UBERON:3010820 name: suboccular arch is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004752 ! palatoquadrate cartilage [Term] @@ -268154,7 +266042,6 @@ is_a: UBERON:0004752 ! palatoquadrate cartilage id: UBERON:3010824 name: processus triangularis of palatoquadrate cartilage synonym: "processus triangularis" BROAD [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -268163,7 +266050,6 @@ id: UBERON:3010827 name: anterior prenasal cartilage is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -268182,7 +266068,6 @@ is_a: UBERON:0006846 ! surface groove id: UBERON:3010830 name: spicule is_a: UBERON:0000064 ! organ part -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005884 ! hyoid arch skeleton [Term] @@ -268262,7 +266147,6 @@ replaced_by: UBERON:0002364 id: UBERON:3011120 name: early proximal tubule synonym: "PT2" EXACT [UBERON:3011120] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005309 ! pronephric nephron creation_date: 2011-04-20T05:19:55Z @@ -268271,7 +266155,6 @@ creation_date: 2011-04-20T05:19:55Z id: UBERON:3011121 name: late distal segment is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005309 ! pronephric nephron creation_date: 2011-04-20T05:21:45Z @@ -268484,8 +266367,6 @@ name: vacuolated notochordal tissue def: "Connective tissue that is matrix-poor with large number of vacuolated cells." [PSPUB:0000170] synonym: "notochord proper" EXACT [VSAO:curator] is_a: UBERON:0002384 ! connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002328 ! notochord [Term] @@ -268610,8 +266491,6 @@ name: limiting layer of elasmoid scale def: "Hypermineralized tissue lacking collagen (except Sharpey's fibres), developing in close proximity to the basal cells of the overlying epithelium." [PSPUB:0000170] comment: Not clear if this layer is acellular, making a tissue type for now. is_a: UBERON:0000479 ! tissue -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4000070 ! elasmoid scale [Term] @@ -268689,7 +266568,6 @@ id: UBERON:4000119 name: non-mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is not mineralized." [PSPUB:0000170] synonym: "non-mineralized cartilage" EXACT [VSAO:curator] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue @@ -268697,7 +266575,6 @@ relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue id: UBERON:4000120 name: mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is mineralized." [PSPUB:0000170] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000020 ! mineralized extracellular matrix is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:4000088 ! mineralized cartilage tissue @@ -269018,7 +266895,6 @@ relationship: part_of UBERON:0004765 ! skeletal element id: UBERON:4100004 name: ischial peduncle def: "Bony projection (peduncle) that is located on the posterior portion of the ilium, posterior to the acetabulum." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001274 ! ischium @@ -269079,7 +266955,6 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4100011 name: postacetabular buttress def: "A bony process at the distal margin of the acetabulum formed by the ischium and/or the ischial peduncle of the ilium." [PHENOSCAPE:AD] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001269 ! acetabular part of hip bone @@ -269088,7 +266963,6 @@ relationship: part_of UBERON:0001269 ! acetabular part of hip bone id: UBERON:4100012 name: postacetabular zone def: "Region of the ilium posterior and dorsal to the acetabulum." [PHENOSCAPE:AD] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001273 ! ilium @@ -269119,7 +266993,6 @@ id: UBERON:4100016 name: posterior process of ilium def: "A posteriorly directed bony projection from the ilium that is the attachment site of the iliofibularis muscle (see Sumida, 1997)." [PHENOSCAPE:AD] synonym: "posterior iliac process" RELATED [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001273 ! ilium @@ -269129,8 +267002,6 @@ id: UBERON:4100100 name: parasphenoid flange def: "Lateral expansion of the parasphenoid." [PHENOSCAPE:BC] synonym: "parasphenoid wing" BROAD [] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004745 ! parasphenoid @@ -269168,7 +267039,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 id: UBERON:4100114 name: anterior distal condyle of femur def: "Anatomical projection in the distal region of the femur." [PHENOSCAPE:NI] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -269186,7 +267056,6 @@ relationship: part_of UBERON:0004704 ! bone fossa id: UBERON:4100116 name: posterior distal condyle of femur def: "Anatomical projection in the posterior/distal region of the femur." [PHENOSCAPE:NI] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -269228,7 +267097,6 @@ name: thagomizer def: "The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators." [https://en.wikipedia.org/wiki/Thagomizer] comment: The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic 'The Far Side', and thereafter became gradually adopted as an informal term within scientific circles, research, and education. {xref="https://en.wikipedia.org/wiki/Thagomizer"} synonym: "tail spikes" BROAD [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034768 ! morphological feature relationship: only_in_taxon NCBITaxon:436486 ! Dinosauria relationship: part_of UBERON:0007812 ! post-anal tail @@ -269237,7 +267105,6 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:4200000 name: medial blade of ilium def: "The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues." [PHENOSCAPE:ad] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0010746 ! iliac blade @@ -269247,7 +267114,6 @@ id: UBERON:4200001 name: postpubis def: "The region of the pubis posterior to the acetabulum." [PHENOSCAPE] comment: In some non-avian reptile this terminology refers to a distinct rear facing process of the pubis. In avians and some closely related theropod taxa this term is used to denote the pubis itself which has been rotated to face backwards. -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -269272,7 +267138,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200004 name: intertrochanteric fossa def: "Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -269299,7 +267164,6 @@ id: UBERON:4200007 name: transverse pelvic ridge def: "The transverse pelvic ridge is a short crest directly anterior to, and not extending posterior to, the prominent supra-acetabular buttress from Pawley and Warren 2006." [PHENOSCAPE] is_a: UBERON:0000064 ! organ part -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001273 ! ilium [Term] @@ -269309,7 +267173,6 @@ def: "Joint that articulates left and right clavicles." [PHENOSCAPE] synonym: "interclavicle joint" EXACT [] xref: PHENOSCAPE:wd is_a: UBERON:0008114 ! joint of girdle -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone @@ -269327,7 +267190,6 @@ name: ventral humeral ridge def: "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." [PHENOSCAPE] synonym: "pectoral process" RELATED [] xref: PHENOSCAPE:ad -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -269347,7 +267209,6 @@ id: UBERON:4200012 name: ectepicondylar flange def: "Flange present of the distal region of the humerus, associated with extensor musculature of forelimb." [PHENOSCAPE] xref: PHENOSCAPE:ni -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -269366,7 +267227,6 @@ relationship: part_of UBERON:0002495 ! long bone id: UBERON:4200014 name: lateral tuber of ulna def: "Projection on the lateral side of proximal part of the ulna." [PHENOSCAPE:NI] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001424 ! ulna @@ -269385,10 +267245,8 @@ relationship: part_of UBERON:0012142 ! pedal digitopodium region id: UBERON:4200016 name: postbranchial lamina def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004741 ! cleithrum @@ -269404,7 +267262,6 @@ id: UBERON:4200018 name: calcaneal tuber def: "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." [PHENOSCAPE] xref: PHENOSCAPE:ad -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -269415,7 +267272,6 @@ id: UBERON:4200019 name: preacetabular process def: "Process on ilium located anteriorly to acetabulum." [PHENOSCAPE] xref: PHENOSCAPE:ad -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -269425,7 +267281,6 @@ id: UBERON:4200020 name: suprascapular fossa def: "Fossa on the medial surface on the scapula above the glenoid." [PHENOSCAPE] xref: PHENOSCAPE:ad -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -269435,8 +267290,8 @@ id: UBERON:4200021 name: astragalus-calcaneum unit def: "Osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE] xref: PHENOSCAPE:NI +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system -is_a: UBERON:0004120 ! mesoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: has_component UBERON:0001450 ! calcaneus relationship: has_component UBERON:0002395 ! talus @@ -269470,7 +267325,6 @@ id: UBERON:4200025 name: ascending process of the astragalus def: "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly." [PHENOSCAPE:NI] xref: PHENOSCAPE:NI -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002395 ! talus @@ -269496,7 +267350,6 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200028 name: adductor blade def: "A prominent ridge in basal tetrapods on the ventral side of the femur that includes the fourth trochater, internal trochanter and the adductor crest (based on Coates, 1996)." [PHENOSCAPE:AD] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -269505,7 +267358,6 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200029 name: adductor crest def: "A bony crest on venteral side of femur that is the attachment site for the adductor muscles." [PHENOSCAPE:AD] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -269515,7 +267367,6 @@ relationship: part_of UBERON:4200028 ! adductor blade id: UBERON:4200030 name: antitrochanter def: "Raised surface at the posterior portion of the acetabulum (see Nesbitt, 2011)." [PHENOSCAPE:NI] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001269 ! acetabular part of hip bone @@ -269534,7 +267385,6 @@ id: UBERON:4200032 name: clavicle blade def: "Expanded and flattened ventral region of clavicle bone." [PHENOSCAPE] is_a: UBERON:0005055 ! zone of long bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone @@ -269542,9 +267392,7 @@ relationship: part_of UBERON:0001105 ! clavicle bone id: UBERON:4200033 name: cleithrum head def: "Expanded dorsal region of the cleithrum." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004741 ! cleithrum @@ -269552,7 +267400,6 @@ relationship: part_of UBERON:0004741 ! cleithrum id: UBERON:4200034 name: cnemial crest def: "Longitudnal bony ridge on tibia, attachment site of the major extensor muscle of the hind limb." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000979 ! tibia @@ -269561,7 +267408,6 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:4200036 name: internal trochanter def: "A boney projection on the internal diaphysis of the femur anterior or medial to the intertrochanteric fossa, below the femoral head. Muscle attachment site for ventral muscle mass notably the puboischiofemoralis externus. Modified from Romer 1956." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -269570,7 +267416,6 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200037 name: supinator process def: "A bony process that corresponds to the attachment site for the forelimb supinator muscles in tetrapods, distal to the deltopectoral crest and anterior to the radial condyle." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -269579,7 +267424,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200038 name: subscapular fossa def: "A marked depression on the medial side of the scapula blade, often opposite the glenoid region." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -269589,7 +267433,6 @@ id: UBERON:4200039 name: supraacetabular buttress def: "A bony protuberance dorsal to the acetabulum on the ilium, confluent with the supraacetabular crest (when present). Acts as a bone brace to prevent excessive femoral abduction and the origin site for part of the M. iliofemoralis." [PHENOSCAPE] synonym: "acetabular buttress" BROAD [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -269598,7 +267441,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200040 name: acrocoracoid process def: "Anatomical process located in the proximal region of the coracoid in avian theropods, that is hook-shaped." [PHENOSCAPE:NI] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004743 ! coracoid bone @@ -269615,7 +267457,6 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:4200042 name: brevis shelf def: "Anatomical projection on the ilium, anchoring caudal muscles." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -269624,7 +267465,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200043 name: brevis fossa def: "Fossa located on the brevis shelf." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -269634,7 +267474,6 @@ relationship: part_of UBERON:4200042 ! brevis shelf id: UBERON:4200044 name: articular surface for the calcaneum on the astragalus def: "Contact surface between the calcaneum and the astragalus located on the astragalus." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -269644,7 +267483,6 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200045 name: articular surface for the astragalus on the calcaneum def: "Contact surface between the calcaneum and the astragalus located on the calcaneum." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -269654,7 +267492,6 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200046 name: astragalo-calcaneal canal def: "The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011)." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:4200021 ! astragalus-calcaneum unit @@ -269676,7 +267513,6 @@ def: "Anatomical projection that is an expansion on the proximal region of the h comment: Origin of the aponeursis of humeral head of the M. biceps brachii. From Bamuel et al. 1993 synonym: "crista bicipitalis" EXACT [] synonym: "crista tuberculi majoris" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000976 ! humerus @@ -269699,7 +267535,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200051 name: cotyloid notch def: "A notch or opening in the ventral part of the acetabular rim." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006802 ! acetabular rim @@ -269708,7 +267543,6 @@ relationship: part_of UBERON:0006802 ! acetabular rim id: UBERON:4200052 name: crista tibiofibularis def: "Tuberosity on the posterior surface of the lateral femoral condyle." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -269749,7 +267583,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200060 name: ectepicondylar foramen def: "Formen present on the ectepicondyle of the humerus." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus @@ -269773,7 +267606,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200063 name: ectocondylar tubercle def: "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -269844,7 +267676,6 @@ id: UBERON:4200079 name: dorsal iliac process def: "Posteriordorsal process of the ilium." [PHENOSCAPE] comment: It spresences gives the ilium a 'double headed' appearence. -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -269853,7 +267684,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200080 name: fibular crest def: "A bony projection on the lateral side of the tibia, allowing contact between the later and the fibula." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001446 ! fibula @@ -269862,9 +267692,7 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:4200081 name: hypocleideum def: "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007841 ! furcula @@ -269896,7 +267724,6 @@ id: UBERON:4200086 name: iliac neck def: "A constricted region of the ilium which is dorsal to the acetabulular region. Prior to the expansion of the iliac blade." [PHENOSCAPE] synonym: "neck of ilium" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -269905,7 +267732,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200087 name: iliac peduncle def: "Bony projection that is part of the dorsal surface of the ischim, where it articulates with the ilium." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium @@ -269914,7 +267740,6 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:4200088 name: iliac peduncle of the pubis def: "Bony projection that is part of the dorsal surface of the pubis where it meets the ilium." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -269923,7 +267748,6 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200089 name: fibular facet of the calcaneum def: "Articular surface on calcaneum for the fibula." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -269933,7 +267757,6 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200090 name: fibular facet of the astragalus def: "Articular surface on the astragalus for the fibula." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -269954,7 +267777,6 @@ relationship: part_of UBERON:0001679 ! ethmoid bone id: UBERON:4200092 name: flexor tubercle of ungual def: "Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013703 ! integumentary projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:3010209 ! keratinous claw @@ -269978,7 +267800,6 @@ relationship: part_of UBERON:0012140 ! digitopodium region id: UBERON:4200095 name: infraspinous process def: "Process on infraspinous (region below the spine) of scapula." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -270011,7 +267832,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200098 name: ischial foot def: "Expansion of the distal region of the ischium." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium @@ -270027,7 +267847,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200100 name: latissimus dorsi process def: "A bony process on the dorsal side of the proximal region of the humerus which corresponds to the insertion site of the Latissimus dorsi muscle." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -270060,7 +267879,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200104 name: metacarpal extensor pit def: "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002374 ! metacarpal bone @@ -270086,7 +267904,6 @@ id: UBERON:4200107 name: obturator process of ischium def: "Process located on the ventral shaft of the ischium that denotes the attachment site of the pubio-ischio-femoralis externus." [PHENOSCAPE] comment: In birds the pubio-ischio-femoralis externus is sometimes called the M.oburatorius lateralis and medialis. -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium @@ -270127,7 +267944,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200112 name: prepectoral space def: "A triangular, anteroventrally facing area developed between the preaxial margin of the humerus and the proximal limb of the ventral humeral ridge. Based on Callier et al. 2009 ." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -270142,7 +267958,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200114 name: prepubic process def: "Elongate process forming the anteriormost part of the pubis." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -270167,7 +267982,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200117 name: pubic boot def: "Anteroposterior expansion of the distal region of the pubis." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -270176,7 +267990,6 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200118 name: pubic peduncle def: "Bony projection on the anterior portion of the ilium, anterior to the acetabulum that articulates with the pubis." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -270185,7 +267998,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200119 name: pubis-ischium contact def: "Contact zone between the pubis and the ischium." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone @@ -270194,7 +268006,6 @@ relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone id: UBERON:4200120 name: puboischiadic plate def: "A broad expnase of bone incorperating both the pubis and the ischium. Origin site for ventral limb muscle including the pubioishciofemoralis externus. Modified from Romer 1956 ." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone @@ -270227,7 +268038,6 @@ relationship: part_of RO:0002577 ! system id: UBERON:4200123 name: scapular process def: "The dorsal extension of the scapulocoracoid above the level of the glenoid region in basal gnathostomes. Modified from Brazeau 2009." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -270236,7 +268046,6 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200124 name: sternal trabecula def: "Anatomical projections that are elongate processes in the mid and posterior regions of the sternum." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000975 ! sternum @@ -270245,7 +268054,6 @@ relationship: part_of UBERON:0000975 ! sternum id: UBERON:4200125 name: supraacetabular crest def: "Anatomical projection (crest) located dorsaly to the acetabulum." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -270254,7 +268062,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200126 name: supraacetabular rim def: "Bony rim that is part of the supraacetabular region." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -270263,7 +268070,6 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200127 name: suprascapula foramen def: "The route through which structures pass between the base of the neck and the posterior scapular region. It is formed by the suprascapular notch of the scapula and the superior transverse scapular ligament. From http://medical-dictionary.thefreedictionary.com/suprascapular+foramen." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -270293,7 +268099,6 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:4200130 name: tibial facet of astragalus def: "Facet for the articulation of the tibia on the astragalus (talus)." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -270304,7 +268109,6 @@ id: UBERON:4200131 name: trochanteric shelf def: "Anatomical projection on the anterolateral region of the proximal end of the femur." [PHENOSCAPE] comment: In Archosaurs was originally a possible insertion site for the m. iliofemoralis externus (Hutchinson 2001). In more derived dinosaurs this becomes a distinct process possibly providing the attachment surface for mm. iliotrochanteri in addition to m. iliofemoralis externus (Carrano and Hutchinson 2002) -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -270336,7 +268140,6 @@ id: UBERON:4200135 name: puboischiadic bar def: "A transverse flattened or cylindrical plate in the posterior body wall opposite the anterior ends of the pelvic fins, in front of the vent and at the posterior end of the body cavity, that supports a few anterior pelvic radials and a basal cartilage, the basipterygium. from Leonard J. V. Compagno. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2." [PHENOSCAPE] comment: Potentially homologous to the pelvic girdle. -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -270355,7 +268158,6 @@ id: UBERON:4200139 name: palatoquadrate element def: "Endochondral element that is part of the suspensorium sometimes ossifying distally as the quadrate bone and linking the basal section of the braincase to the lower jaw." [PHENOSCAPE] comment: The palatoquadrate cartilage is the primary element of the suspensorium in larval amphibians and can ossify distally in some taxa, becoming the quadrate bone. In mammals the quadrate bone becomes the incus. -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0002-1810-9886 relationship: part_of UBERON:0003108 ! suspensorium @@ -270379,7 +268181,6 @@ relationship: part_of UBERON:3000922 ! prehallux skeleton id: UBERON:4200150 name: accessory foramen def: "Foramen found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen 'c' and 'd' after Jarvik 1996." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -270457,7 +268258,6 @@ relationship: part_of UBERON:0000983 ! metatarsus region id: UBERON:4200159 name: ventral ridge system def: "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur @@ -270489,7 +268289,6 @@ relationship: part_of UBERON:0002534 ! paired fin id: UBERON:4200166 name: hindlimb interepipodial space def: "The space between the bones of the tibia and the fibula." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0000979 ! tibia relationship: adjacent_to UBERON:0001446 ! fibula @@ -270498,7 +268297,6 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:4200167 name: mesial pelvic ridge -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -270510,9 +268308,9 @@ is_obsolete: true [Term] id: UBERON:4200169 -name: process 2 +name: process 2 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure +synonym: "process 2" BROAD [] is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270520,7 +268318,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200170 name: process 3 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 4 of entepicondyle (see Coates 1996)." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270528,7 +268325,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200171 name: process 4 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 3 of entepicondyle (see Coates 1996)." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270541,7 +268337,6 @@ synonym: "collum anatomicum humeri" EXACT LATIN [FMA:23356, FMA:TA] synonym: "humeral neck" EXACT [] xref: FMA:23356 xref: NCIT:C33164 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -270552,7 +268347,6 @@ relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus [Term] id: UBERON:4200173 name: dorsal ridge -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270575,13 +268369,11 @@ id: UBERON:4200176 name: ascending process of clavicle def: "A bony dorsal extension of the clavicle." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200177 name: supracondyle tubercle -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270609,14 +268401,12 @@ id: UBERON:4200181 name: astragalus head def: "The region of the astragalus/ talus that carries the articular surface for the navicular." [PHENOSCAPE] synonym: "talus head" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200182 name: lateral tubercle of astragalus -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002395 ! talus @@ -270625,7 +268415,6 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200183 name: bicipital tuberosity def: "The rough eminence which is on the anterior inner aspect of the neck of the radius and into which the tendon of the biceps is inserted. From http://www.merriam-webster.com/medical." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone @@ -270634,7 +268423,6 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:4200184 name: ulnar tuberosity def: "His roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001424 ! ulna @@ -270643,7 +268431,6 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:4200185 name: entepicondyle fossa def: "A fossa on the distal humerus proximal to the entepicondyle." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: adjacent_to UBERON:0006806 ! entepicondyle of humerus relationship: part_of UBERON:0000976 ! humerus @@ -270651,7 +268438,6 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200186 name: distal keel of metacarpal III -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 @@ -270705,7 +268491,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200193 name: posterodorsal process of ilium def: "Anatomical project part of the blade of the ilium that projects posteriorly." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -270735,7 +268520,6 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200197 name: anterior humeral ridge def: "Ridge or keel at the proximal end of the humerus. (see Laurin 1998)." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -270744,7 +268528,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200198 name: incisor process def: "Process that is part of the mandible that is in close proximity to the incisor teeth." [PHENOSCAPE] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001684 ! mandible @@ -270762,7 +268545,6 @@ relationship: part_of UBERON:0002105 ! vestibulo-auditory system id: UBERON:4200203 name: humeral facet on the ulna def: "Facet on the ulna for articulation with the ulnar condyle of the humerus." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001424 ! ulna @@ -270772,7 +268554,6 @@ id: UBERON:4200204 name: humeral facet on radius def: "Facet on the radius for articulation with the radial condyle of the humerus." [PHENOSCAPE] synonym: "proximal articular surface of radius" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001423 ! radius bone @@ -270804,7 +268585,6 @@ is_a: UBERON:2101586 ! pectoral fin radial element id: UBERON:4200209 name: postaxial process of the ulnare def: "A projection on the postaxial region of the ulnare." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002445 ! ulnare @@ -270812,7 +268592,6 @@ relationship: part_of UBERON:0002445 ! ulnare id: UBERON:4200210 name: postaxial process of the femur def: "A projection on the postaxial region of the femur." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -270820,7 +268599,6 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200211 name: postaxial process of the fibula def: "A projection on the postaxial region of the fibula." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001446 ! fibula @@ -270828,7 +268606,6 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:4200212 name: pectoral process of humerus synonym: "pectoral process" RELATED [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270836,7 +268613,6 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200213 name: deltoid process -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -270845,7 +268621,6 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200214 name: epipodial facet def: "Facets for the articulation of the epipodial (zeugopodial) elements." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0011583 ! stylopodial skeleton @@ -270900,7 +268675,6 @@ is_a: UBERON:0006800 ! anatomical line id: UBERON:4200222 name: distal groove of humerus def: "Groove along the distal margin of the humerus, ventral to the radial and ulnar condyle." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus @@ -270915,7 +268689,6 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200224 name: columnar area def: "Modified from Garvey et al. 2005. ' Between the dorsal ridge and the caput humeri is a futher recessed area......that clearly separates the two structures and is slightly separted from the dorsal surface of the entepicondyle, and more specifically from the unfinished bone of the entepicondyle, by a narrow ridge.'." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0000976 ! humerus @@ -270931,9 +268704,7 @@ relationship: has_muscle_origin UBERON:0004753 ! scapulocoracoid id: UBERON:4200226 name: anteroventral process of cleithrum def: "A ramus of the celithrum that descend along the girdle. Its rounded outer surface forms the articulation surface for the clavicle while its anterior surface overlaps with the anterior process of the scapulocoracoid." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -270944,14 +268715,12 @@ is_obsolete: true [Term] id: UBERON:4200228 name: excurrent foramen of ectepicondylar foramen -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen [Term] id: UBERON:4200229 name: incurrent foramen of ectepicondylar foramen -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen @@ -270982,7 +268751,6 @@ id: UBERON:4200233 name: dorsal clavicular process def: "A process, extending dorsally from the clavicular plate, that attaches to the cleithrum. Modified from Clack 2012 and Coates 1996." [PHENOSCAPE] synonym: "ascending dorsal clavicular process" EXACT [] -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001105 ! clavicle bone @@ -271076,7 +268844,6 @@ relationship: develops_from UBERON:0003107 ! Meckel's cartilage [Term] id: UBERON:4200251 name: meckelian foramen -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:4200250 ! meckelian bone @@ -271092,7 +268859,6 @@ id: UBERON:4300002 name: palatine prong def: "A process on the palatine that projects outward and upward and articulates with a depression (maxillary saddle) in the proximal end of the maxilla [Gosline WA et al, 1966; Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001682 ! palatine bone @@ -271127,7 +268893,6 @@ relationship: part_of UBERON:0000970 ! eye id: UBERON:4300006 name: scale row def: "A series of scales in alignment with each other along some axis of the body." [PHENOSCAPE:BF] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: has_part UBERON:0002542 ! scale @@ -271136,7 +268901,6 @@ relationship: has_part UBERON:0002542 ! scale id: UBERON:4300007 name: medial pelvic process def: "Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf]." [http://hdl.handle.net/10088/11710] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2000623 ! basipterygium bone @@ -271166,7 +268930,6 @@ is_a: UBERON:0000026 ! appendage id: UBERON:4300013 name: paired fin radial skeleton synonym: "paired fin radial series" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4440008 ! fin radial skeleton intersection_of: UBERON:4440008 ! fin radial skeleton intersection_of: part_of UBERON:0002534 ! paired fin @@ -271371,7 +269134,6 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300035 name: supraneural element def: "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -271538,9 +269300,7 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300106 name: ventral limb of posttemporal def: "Zone of bone organ that is the ventral extension of the posttemporal." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2000549 ! posttemporal @@ -271549,9 +269309,7 @@ id: UBERON:4300108 name: lepidotrichial segment def: "Zone of bone organ that is part of a lepidotrich and connected to other segments by collagen fibers. These segments lend flexibility to the lepidtrich." [https://doi.org/10.1002/jmor.20161] synonym: "segment of fin ray" EXACT [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000172 ! lepidotrichium @@ -271674,7 +269432,6 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300125 name: dorsal iliac ridge def: "Ridge that is part of the ilium." [PHENOSCAPE:AD, WD] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001273 ! ilium @@ -271684,8 +269441,6 @@ id: UBERON:4300126 name: tectorial restraint system def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates) [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]." [PHENOSCAPE] is_a: UBERON:0000467 ! anatomical system -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001846 ! internal ear @@ -271760,7 +269515,6 @@ relationship: part_of RO:0002577 ! system id: UBERON:4300137 name: lingual region def: "The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue." [PHENOSCAPE:WD] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -271769,7 +269523,6 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300138 name: labial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -271778,7 +269531,6 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300139 name: posterolingual region def: "The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips." [PHENOSCAPE:WD] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -271835,7 +269587,6 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300151 name: pelvic intercleithral cartilage def: "Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983)." [http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -271859,9 +269610,7 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300154 name: procurrent spur def: "A ventrally projecting spur on the posteriormost ventral procurrent caudal ray overlapping ventrally the preceding ray in various percomorphs (Johnson, 1975)." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001830 ! caudal fin ventral procurrent ray @@ -271893,7 +269642,6 @@ relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:4300158 name: ectepicondylar depression -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus @@ -272082,7 +269830,6 @@ id: UBERON:4300196 name: processus descendens of sphenoid synonym: "otico-sphenoid bridge" EXACT [] is_a: UBERON:0004530 ! bony projection -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001677 ! sphenoid bone [Term] @@ -272091,7 +269838,6 @@ name: Westoll line def: "More or less concentric lines of discontinuity in the cosmine of Dipnoi, probably due to cyclic resorption and redeposition during growth occurring on the bases of individual scales and also as large structures between headshield plates.[Fishbase]." [https://www.fishbase.de/glossary/Glossary.php?q=Westoll+lines] synonym: "Westoll lines" EXACT PLURAL [] is_a: UBERON:0003102 ! surface structure -is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:4000087 ! cosmine [Term] @@ -272120,7 +269866,6 @@ relationship: part_of UBERON:0010323 ! cranial skeletal system id: UBERON:4300201 name: subepiotic fossa def: "Fossa for epaxial musculature inserting on the braincase. Forey et al. 1996." [ISBN:978-0-12-670950-6] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0001703 ! neurocranium @@ -272129,7 +269874,6 @@ id: UBERON:4300202 name: endoskeletal cranial joint def: "The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997)." [ISBN:978-0-412-78480-4] synonym: "endoskeletal intracranial joint" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium @@ -272138,7 +269882,6 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300203 name: tectum orbitale def: "The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993)." [ISBN:9780226315706] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium @@ -272492,7 +270235,6 @@ id: UBERON:4300249 name: lateral occipital foramen def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. [database_cross_reference: GOC:cvs][database_cross_reference: https://orcid.org/0000-0002-2244-7917][database_cross_reference: ZFIN:ZDB-PUB-961014-192]." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005892 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001693 ! exoccipital bone @@ -272510,7 +270252,6 @@ is_a: UBERON:2001830 ! caudal fin ventral procurrent ray id: UBERON:4300252 name: ethmo-palatine cartilage def: "The ethmo-palatine cartilage (EPC) is a distinct body situated between the posterior surface of the upper arm of the premaxilla and the anterior margin of the palatine. There is usually only a single cartilage mass lying between these bones, although that cartilage is apparently subdivided into two units in some taxa (e.g., the Old World characiform family Citharinidae, Vari, 1979:294). Vari 1989a." [https://doi.org/10.5479/si.00810282.471] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0011085 ! palatoquadrate arch @@ -272519,7 +270260,6 @@ relationship: part_of UBERON:0011085 ! palatoquadrate arch id: UBERON:4300261 name: pectoral fin hook def: "Process that is part of the pectoral fin lepidotrichium." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4300284 ! fin hook property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium @@ -272528,7 +270268,6 @@ relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium id: UBERON:4300262 name: pelvic fin hook def: "Process that is part of the pelvic fin lepidotrichium." [PHENOSCAPE] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4300284 ! fin hook property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium @@ -272592,9 +270331,7 @@ id: UBERON:4300269 name: epioccipital bridge def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001] synonym: "epiotic bridge" EXACT [] -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001412 ! epiotic @@ -272636,7 +270373,6 @@ relationship: part_of UBERON:4500004 ! adipose fin skeleton id: UBERON:4300275 name: suborbital stay def: "A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]." [https://en.wikipedia.org/wiki/Scorpaeniformes] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001408 ! infraorbital 3 @@ -272680,8 +270416,6 @@ is_a: UBERON:2002127 ! myorhabdoid bone id: UBERON:4300284 name: fin hook def: "Anatomical projection that is part of a fin." [PHENOSCAPE] -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000172 ! lepidotrichium @@ -272698,7 +270432,6 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300286 name: second preethmoid element def: "Endochondral skeletal element found between the preethmoid and maxilla." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003112 ! olfactory region @@ -272821,7 +270554,6 @@ property_value: dc-contributor https://orcid.org/0000-0002-5378-0931 id: UBERON:4500004 name: adipose fin skeleton def: "Median fin skeleton supporting the adipose fin." [PHENOSCAPE] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000170 ! median fin skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:2000251 ! adipose fin @@ -272895,7 +270627,6 @@ id: UBERON:4500012 name: hypobranchial series def: "Anatomical cluster that consists of the hypobranchial elements within an individual." [PHENOSCAPE] is_a: BFO:0000040 ! material entity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001893 ! hypobranchial element @@ -272908,7 +270639,6 @@ id: UBERON:4500013 name: pharyngobranchial series def: "Anatomical cluster that consists of the pharyngobranchial elements within an individual." [PHENOSCAPE] is_a: BFO:0000040 ! material entity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001909 ! pharyngobranchial element @@ -272921,7 +270651,6 @@ id: UBERON:4500014 name: basibranchial series def: "Anatomical cluster that consists of the basibranchial elements within an individual." [PHENOSCAPE] is_a: BFO:0000040 ! material entity -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:0013746 ! basibranchial element @@ -272935,7 +270664,6 @@ name: premaxilla articular process def: "Pharyngeal arch bone immediately posterior to the ascending process, the medial surface of which articulates with the anterior end of the maxillary." [PHENOSCAPE] comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes) synonym: "articular process of the premaxilla" EXACT [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0002244 ! premaxilla @@ -272955,7 +270683,6 @@ id: UBERON:4500018 name: premaxilla maxillary process def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." [PHENOSCAPE] synonym: "postmaxillary process" EXACT [] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0002244 ! premaxilla @@ -273448,7 +271175,6 @@ def: "A subdivision of the skeleton of the autopod consisting of the phalanges o synonym: "digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: CARO:0000003 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:5002544 ! digit plus metapodial segment @@ -273795,12 +271521,12 @@ consider: FBbt:00000000 [Term] id: UBERON:6000002 -name: panarthropod tagma -def: "The three main divisions of the whole organism formed from groups of segments." [FBC:gg] +name: arthropod tagma +def: "One of the main divisions of the whole organism of arthropods formed from groups of segments." [https://doi.org/10.1016/B978-0-12-385026-3.00024-3] +comment: Strictly speaking the term "tagma" cam be used for any metameric organism, however we follow the common usage which is to restrict the term to arthropods. xref: FBbt:00000002 -is_a: UBERON:6057001 ! insect anterior-posterior subdivision of organism -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata -relationship: only_in_taxon NCBITaxon:88770 ! Panarthropoda +is_a: UBERON:0011676 ! subdivision of organism along main body axis +relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0000468 ! multicellular organism [Term] @@ -273819,7 +271545,6 @@ def: "Head segment derived from the second embryonic segment (between the labral synonym: "acron" RELATED [] xref: FBbt:00000005 is_a: UBERON:6000007 ! procephalic segment -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: only_in_taxon NCBITaxon:50557 {source="cjm"} ! Insecta [Term] @@ -273830,7 +271555,6 @@ xref: FBbt:00000006 is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: part_of UBERON:0000033 ! head -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000033 ! head [Term] @@ -273843,7 +271567,6 @@ synonym: "preoral segment" EXACT [] synonym: "procephalon" RELATED [] xref: FBbt:00000007 is_a: UBERON:6000006 ! insect head segment -relationship: never_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000033 ! head [Term] @@ -273882,7 +271605,7 @@ id: UBERON:6000015 name: insect thorax def: "The main middle section of the insect body comprising three thoracic rings: the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs." [FlyBase:FBrf0166419] xref: FBbt:00000015 -is_a: UBERON:6000002 ! panarthropod tagma +is_a: UBERON:6000002 ! arthropod tagma relationship: only_in_taxon NCBITaxon:50557 ! Insecta [Term] @@ -273933,7 +271656,7 @@ id: UBERON:6000020 name: insect abdomen def: "The most posterior of the three tagma (UBERON:6000002)." [FlyBase:FBrf0166419] xref: FBbt:00000020 -is_a: UBERON:6000002 ! panarthropod tagma +is_a: UBERON:6000002 ! arthropod tagma relationship: only_in_taxon NCBITaxon:50557 ! Insecta [Term] @@ -273972,11 +271695,10 @@ is_a: UBERON:6007248 ! insect chorionic specialization [Term] id: UBERON:6000094 -name: clypeo-labral anlage in statu nascendi -synonym: "Asn Cly" RELATED [FBC:DOS] +name: obsolete clypeo-labral anlage in statu nascendi +comment: No need for such a specific term in Uberon. See https://github.com/obophenotype/uberon/issues/2154. xref: FBbt:00000094 -is_a: UBERON:6005413 ! insect anlage in statu nascendi -relationship: part_of FBbt:01000119 +is_obsolete: true [Term] id: UBERON:6000096 @@ -273990,7 +271712,6 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000097 name: insect cephalic furrow xref: FBbt:00000097 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0004734 ! gastrula @@ -274023,7 +271744,6 @@ id: UBERON:6000119 name: insect anterior ectoderm def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] xref: FBbt:00000119 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -274044,7 +271764,6 @@ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/u id: UBERON:6000130 name: insect visceral mesoderm xref: FBbt:00000130 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda relationship: part_of UBERON:6000128 ! insect trunk mesoderm @@ -274070,8 +271789,8 @@ id: UBERON:6000137 name: embryonic tagma def: "Any tagma (UBERON:6000002) that is part of some embryo (UBERON:6000052)." [FBC:auto_generated_definition] xref: FBbt:00000137 -is_a: UBERON:6000002 ! panarthropod tagma -intersection_of: UBERON:6000002 ! panarthropod tagma +is_a: UBERON:6000002 ! arthropod tagma +intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000922 ! embryo @@ -274288,8 +272007,6 @@ relationship: part_of UBERON:6001055 ! insect presumptive embryonic/larval nervo [Term] id: UBERON:6001057 name: insect neurogenic region -xref: FBbt:00001057 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -274481,8 +272198,8 @@ id: UBERON:6001728 name: insect larval tagma def: "Any tagma (UBERON:6000002) that is part of some larva (UBERON:6001727)." [FBC:auto_generated_definition] xref: FBbt:00001728 -is_a: UBERON:6000002 ! panarthropod tagma -intersection_of: UBERON:6000002 ! panarthropod tagma +is_a: UBERON:6000002 ! arthropod tagma +intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0002548 ! larva @@ -274491,6 +272208,7 @@ id: UBERON:6001729 name: insect larval segment def: "Any segment that is part of some larva." [FBC:auto_generated_definition] xref: FBbt:00001729 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -274705,7 +272423,6 @@ name: insect embryonic/larval imaginal precursor def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] synonym: "larval imaginal precursor" EXACT [] xref: FBbt:00001760 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6005023 ! insect imaginal precursor relationship: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0003142 ! prepupa @@ -274747,7 +272464,6 @@ name: insect antennal disc def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] xref: FBbt:00001767 is_a: UBERON:0000939 ! imaginal disc -is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:6001735 ! insect larval antennal segment relationship: part_of UBERON:6001766 ! insect eye-antennal disc @@ -274838,6 +272554,7 @@ id: UBERON:6001789 name: insect histoblast def: "A progenitor of the adult external abdomen." [FBC:DOS, FBC:gg] xref: FBbt:00001789 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6001760 ! insect embryonic/larval imaginal precursor relationship: develops_from UBERON:6016022 ! insect abdominal histoblast primordium @@ -274963,7 +272680,6 @@ name: insect embryonic/larval ocular segment sensillum def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] synonym: "larval ocular segment sensillum" EXACT [] xref: FBbt:00002642 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6007280 ! insect embryonic/larval head sense organ intersection_of: UBERON:6002639 ! insect larval sense organ intersection_of: part_of UBERON:6001731 ! insect larval ocular segment @@ -274974,8 +272690,8 @@ id: UBERON:6003005 name: insect adult tagma def: "Any tagma (UBERON:6000002) that is part of some adult (UBERON:6003004)." [FBC:auto_generated_definition] xref: FBbt:00003005 -is_a: UBERON:6000002 ! panarthropod tagma -intersection_of: UBERON:6000002 ! panarthropod tagma +is_a: UBERON:6000002 ! arthropod tagma +intersection_of: UBERON:6000002 ! arthropod tagma intersection_of: part_of UBERON:0007023 ! adult organism relationship: part_of UBERON:0007023 ! adult organism @@ -275180,6 +272896,7 @@ def: "The pre-oral neuropils of the brain located above and some of it below the synonym: "SPG" RELATED [] xref: FBbt:00003626 is_a: UBERON:0003339 ! ganglion of central nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:0000955 ! brain @@ -275189,7 +272906,6 @@ name: insect protocerebrum def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] xref: FBbt:00003627 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:6000008 ! labral segment relationship: part_of UBERON:6003626 ! insect supraesophageal ganglion @@ -275203,6 +272919,7 @@ synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] xref: FBbt:00003632 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6041000 ! insect synaptic neuropil block relationship: develops_from UBERON:6007070 ! insect centro-posterior medial synaptic neuropil domain relationship: part_of UBERON:6007145 ! insect adult protocerebrum @@ -275254,7 +272971,7 @@ name: insect tergite def: "The dorsal plate (sclerite) of an adult abdominal segment." [FlyBase:FBrf0007734, FlyBase:FBrf0111704] synonym: "abdominal tergite" EXACT [] xref: FBbt:00004476 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6004475 ! insect sclerite relationship: develops_from UBERON:6001792 ! insect anterior dorsal histoblast nest abdominal relationship: develops_from UBERON:6001809 ! insect posterior dorsal histoblast nest abdominal @@ -275283,7 +273000,7 @@ name: insect arista def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals. It extends laterally from the dorsal region of the third segment of the antenna." [FlyBase:FBrf0007734, FlyBase:FBrf0031004, FlyBase:FBrf0137012] synonym: "segment 6" EXACT [] xref: FBbt:00004519 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6007149 ! segment of antenna relationship: develops_from UBERON:6110811 ! insect presumptive arista relationship: part_of UBERON:0000972 ! antenna @@ -275363,7 +273080,7 @@ synonym: "alinotum" EXACT [FlyBase:FBrf0111704] synonym: "mesonotum" EXACT [FlyBase:FBrf0166419] synonym: "notum" BROAD [] xref: FBbt:00004580 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6004552 ! insect tergum relationship: develops_from UBERON:6006032 ! insect mesothoracic tergum primordium relationship: part_of UBERON:6004579 ! insect dorsal mesothorax @@ -275408,7 +273125,6 @@ id: UBERON:6004668 name: insect prothoracic tarsal segment def: "Tarsal segment of the adult prothoracic leg." [FBC:MMC] xref: FBbt:00004668 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004646 ! insect tarsal segment intersection_of: UBERON:6004646 ! insect tarsal segment intersection_of: part_of UBERON:6004663 ! insect prothoracic leg @@ -275423,6 +273139,7 @@ synonym: "prothoracic tarsal segment 1" EXACT [] synonym: "T1 tarsal segment 1" EXACT [] synonym: "T1 Ts1" EXACT [FlyBase:FBrf0219028] xref: FBbt:00004670 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6004648 ! insect metatarsus is_a: UBERON:6004668 ! insect prothoracic tarsal segment intersection_of: UBERON:6004648 ! insect metatarsus @@ -275548,7 +273265,6 @@ def: "A group of small, interconnected ganglia situated posterior to and between synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] xref: FBbt:00005096 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0001017 ! central nervous system @@ -275576,7 +273292,6 @@ name: insect wing margin def: "The border or edge of the wing. It separates the dorsal and ventral compartments." [FBC:gg] synonym: "margin" BROAD [] xref: FBbt:00005378 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -275610,11 +273325,10 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta [Term] id: UBERON:6005425 -name: insect visual anlage in statu nascendi -synonym: "A0Vis" RELATED [] -synonym: "Asn VisSys" RELATED [FBC:DOS] +name: obsolete insect visual anlage in statu nascendi +comment: No need for such a specific term in Uberon. See https://github.com/obophenotype/uberon/issues/2154. xref: FBbt:00005425 -is_a: UBERON:6005413 ! insect anlage in statu nascendi +is_obsolete: true [Term] id: UBERON:6005427 @@ -275636,11 +273350,9 @@ name: insect visual anlage synonym: "A VisSys" RELATED [FBC:DOS] synonym: "AVis" RELATED [] xref: FBbt:00005434 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage -relationship: develops_from UBERON:6005425 ! insect visual anlage in statu nascendi relationship: part_of UBERON:6000119 ! insect anterior ectoderm [Term] @@ -275660,11 +273372,9 @@ name: insect clypeo-labral anlage synonym: "A Cly" RELATED [FBC:DOS] synonym: "clypeo-labral specific anlage" RELATED [] xref: FBbt:00005439 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage -relationship: develops_from UBERON:6000094 ! clypeo-labral anlage in statu nascendi relationship: part_of UBERON:6000119 ! insect anterior ectoderm [Term] @@ -275753,7 +273463,6 @@ name: insect ventral ectoderm synonym: "P2 VenEc" RELATED [FBC:DOS] synonym: "venEc" RELATED [] xref: FBbt:00005558 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:6007045 ! insect trunk ectoderm @@ -275827,7 +273536,6 @@ name: insect mesothoracic tergum primordium def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] xref: FBbt:00006032 is_a: UBERON:0000485 ! simple columnar epithelium -is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:6001778 ! insect wing disc [Term] @@ -275843,7 +273551,6 @@ id: UBERON:6007045 name: insect trunk ectoderm def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] xref: FBbt:00007045 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -275852,7 +273559,7 @@ relationship: part_of UBERON:0000924 ! ectoderm id: UBERON:6007046 name: insect dorsal ectoderm derivative xref: FBbt:00007046 -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: develops_from UBERON:6000112 ! insect dorsal ectoderm @@ -275963,7 +273670,6 @@ id: UBERON:6007245 name: insect cuticular specialization xref: FBbt:00007245 is_a: UBERON:0000476 ! acellular anatomical structure -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0001001 ! chitin-based cuticle @@ -275972,7 +273678,6 @@ id: UBERON:6007248 name: insect chorionic specialization def: "Specialized structure of the chorion of the egg." [FBC:MMC] xref: FBbt:00007248 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000920 ! egg chorion @@ -276062,8 +273767,8 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6017021 name: insect abdominal histoblast anlage xref: FBbt:00017021 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: develops_from UBERON:6005526 ! insect dorsal epidermis primordium @@ -276114,7 +273819,6 @@ name: insect synaptic neuropil def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] xref: FBbt:00040005 is_a: UBERON:0000480 ! anatomical group -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002606 ! neuropil @@ -276135,22 +273839,21 @@ def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] xref: FBbt:00041000 is_a: UBERON:0000480 ! anatomical group -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:6040005 ! insect synaptic neuropil [Term] id: UBERON:6057001 -name: insect anterior-posterior subdivision of organism +name: obsolete insect anterior-posterior subdivision of organism +comment: Obsoleted as it is redundant with 'subdivision of organism along main body axis', which is not restricted to insects. xref: FBbt:00057001 -is_a: UBERON:0000475 ! organism subdivision -relationship: only_in_taxon NCBITaxon:50557 ! Insecta +is_obsolete: true +consider: UBERON:0011676 [Term] id: UBERON:6100153 name: insect sensilla row def: "A row of sensilla." [FBC:DOS] xref: FBbt:00100153 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034926 ! anatomical row relationship: composed_primarily_of UBERON:0002536 ! arthropod sensillum relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -276174,7 +273877,6 @@ id: UBERON:6110746 name: insect presumptive prothoracic metatarsus def: "Region of the prothoracic leg disc that will develop into the prothoracic metatarsus." [FlyBase:FBrf0219028] xref: FBbt:00110746 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001781 ! insect prothoracic leg disc @@ -276183,7 +273885,6 @@ id: UBERON:6110811 name: insect presumptive arista def: "Region of the antennal disc that will develop into the arista." [FlyBase:FBrf0031004] xref: FBbt:00110811 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001767 ! insect antennal disc @@ -276191,7 +273892,6 @@ relationship: part_of UBERON:6001767 ! insect antennal disc id: UBERON:7500033 name: distal-most point of medial condyle of femur def: "The distal-most point of the medial condyle of a femur." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: distalmost_part_of UBERON:0009984 ! medial condyle of femur @@ -276203,7 +273903,6 @@ relationship: part_of UBERON:0009984 ! medial condyle of femur id: UBERON:7500034 name: distal-most point of trochlea of humerus def: "The distal-most point of the trochlea of a humerus." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: distalmost_part_of UBERON:0000144 ! trochlea of humerus @@ -276224,45 +273923,32 @@ relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:7500036 -name: line from caundal-sacral region of the vertebral column to the last vertebra -def: "An anatomical line along a tail that extends from the first caudal vertebra to the last cuadal vertebra." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:0011271 ! caudal-sacral region of vertebral column -intersection_of: connects UBERON:7500035 ! tip of tail -relationship: connects UBERON:0011271 ! caudal-sacral region of vertebral column -relationship: connects UBERON:7500035 ! tip of tail -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from caundal-sacral region of the vertebral column to the last vertebra +def: "OBSOLETE An anatomical line along a tail that extends from the first caudal vertebra to the last cuadal vertebra." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in OBA as tail length (http://purl.obolibrary.org/obo/OBA_VT0002758). +is_obsolete: true +consider: OBA:VT0002758 [Term] id: UBERON:7500037 -name: line from helix of outer ear to intertragus incisure -def: "An anatomical line of a ear that connects the helix of the outer ear to the intertragus incisure of an ear." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:0002488 ! helix of outer ear -intersection_of: connects UBERON:0036212 ! intertragic incisure -relationship: connects UBERON:0002488 ! helix of outer ear -relationship: connects UBERON:0036212 ! intertragic incisure -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from helix of outer ear to intertragus incisure +def: "OBSOLETE An anatomical line of a ear that connects the helix of the outer ear to the intertragus incisure of an ear." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as ear length to notch (FOVT:0000005). +is_obsolete: true +consider: FOVT:0000005 [Term] id: UBERON:7500038 -name: line from the distal-most end of the longest nail to the posterior-most part of the foot -def: "An anatomical line of a hindfoot that connects the distal-most part of the longest nail to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:7500039 ! posterior of pes -intersection_of: connects UBERON:7500040 ! tip of nail -relationship: connects UBERON:7500039 ! posterior of pes -relationship: connects UBERON:7500040 ! tip of nail -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from the distal-most end of the longest nail to the posterior-most part of the foot +def: "OBSOLETE An anatomical line of a hindfoot that connects the distal-most part of the longest nail to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length with nail (FOVT:0000003). +is_obsolete: true +consider: FOVT:0000003 [Term] id: UBERON:7500039 name: posterior of pes def: "The posterior-most point of a foot." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: in_posterior_side_of UBERON:0002387 ! pes @@ -276291,57 +273977,40 @@ consider: UBERON:0009551 [Term] id: UBERON:7500042 -name: line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot -def: "An anatomical line of a hindfoot that connects the end of the longest digit to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:0009551 ! distal segment of digit -intersection_of: connects UBERON:7500039 ! posterior of pes -relationship: connects UBERON:0009551 ! distal segment of digit -relationship: connects UBERON:7500039 ! posterior of pes -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from the distal-most end of the longest phalax of the foot to the posterior-most part of the foot +def: "OBSOLETE An anatomical line of a hindfoot that connects the end of the longest digit to the posterior-most part of a foot." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as pes length without nail (FOVT:0000004). +is_obsolete: true +consider: FOVT:0000004 [Term] id: UBERON:7500043 -name: line from tip of nose to the caudal-sacral region of the vertebral column -def: "An anatomical line of a body that connects the tip of the nose to the posterior-most part of the sacrum." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:0011271 ! caudal-sacral region of vertebral column -intersection_of: connects UBERON:0012128 ! nose tip -relationship: connects UBERON:0011271 ! caudal-sacral region of vertebral column -relationship: connects UBERON:0012128 ! nose tip -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from tip of nose to the caudal-sacral region of the vertebral column +def: "OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of the sacrum." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length without tail (FOVT:0000002). +is_obsolete: true +consider: FOVT:0000002 [Term] id: UBERON:7500044 -name: line from tip of nose to the posterior-most part of the last caudal vertebra -def: "An anatomical line of a body that connects the tip of the nose to the posterior-most part of a tail." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:0012128 ! nose tip -intersection_of: connects UBERON:7500035 ! tip of tail -relationship: connects UBERON:0012128 ! nose tip -relationship: connects UBERON:7500035 ! tip of tail -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from tip of nose to the posterior-most part of the last caudal vertebra +def: "OBSOLETE An anatomical line of a body that connects the tip of the nose to the posterior-most part of a tail." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as body length with tail (FOVT:0000001). +is_obsolete: true +consider: FOVT:0000001 [Term] id: UBERON:7500045 -name: line of medial condyle of femur to greater trochanter -def: "An anatomical line of a femur that connects the medial condyle to the greater trochanter." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:7500033 ! distal-most point of medial condyle of femur -intersection_of: connects UBERON:7500049 ! proximal-most point of greater trochanter of femur -relationship: connects UBERON:7500033 ! distal-most point of medial condyle of femur -relationship: connects UBERON:7500049 ! proximal-most point of greater trochanter of femur -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line of medial condyle of femur to greater trochanter +def: "OBSOLETE An anatomical line of a femur that connects the medial condyle to the greater trochanter." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from greater trochanter to medial condyle (FOVT:0000006). +is_obsolete: true +consider: FOVT:0000006 [Term] id: UBERON:7500046 name: proximal-most point of head of femur def: "The proximal-most point of the head of a femur." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006767 ! head of femur @@ -276353,7 +274022,6 @@ relationship: proximalmost_part_of UBERON:0006767 ! head of femur id: UBERON:7500047 name: proximal-most point of head of humerus def: "The proximal-most point of the head of a humerus." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006801 ! proximal head of humerus @@ -276365,7 +274033,6 @@ relationship: proximalmost_part_of UBERON:0006801 ! proximal head of humerus id: UBERON:7500048 name: proximal-most point of ventral tubercle of humerus def: "The proximal-most point of the ventral tubercle of a humerus." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus @@ -276377,7 +274044,6 @@ relationship: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus id: UBERON:7500049 name: proximal-most point of greater trochanter of femur def: "The proximal-most point of the greater trochanter of a femur." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0002503 ! greater trochanter @@ -276387,27 +274053,19 @@ relationship: proximalmost_part_of UBERON:0002503 ! greater trochanter [Term] id: UBERON:7500050 -name: line of medial condyle of femur to head of femur -def: "An anatomical line of a femur that connects the medial condyle to the head of a femur." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:7500033 ! distal-most point of medial condyle of femur -intersection_of: connects UBERON:7500046 ! proximal-most point of head of femur -relationship: connects UBERON:7500033 ! distal-most point of medial condyle of femur -relationship: connects UBERON:7500046 ! proximal-most point of head of femur -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line of medial condyle of femur to head of femur +def: "OBSOLETE An anatomical line of a femur that connects the medial condyle to the head of a femur." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as femur length from caput to medial condyle (FOVT:0000007). +is_obsolete: true +consider: FOVT:0000007 [Term] id: UBERON:7500051 -name: line from trochlea of humerus to proximal head of humerus -def: "An anatomical line of a humerus that connects the trochlea to the proximal head." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:7500034 ! distal-most point of trochlea of humerus -intersection_of: connects UBERON:7500047 ! proximal-most point of head of humerus -relationship: connects UBERON:7500034 ! distal-most point of trochlea of humerus -relationship: connects UBERON:7500047 ! proximal-most point of head of humerus -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from trochlea of humerus to proximal head of humerus +def: "OBSOLETE An anatomical line of a humerus that connects the trochlea to the proximal head." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to caput (FOVT:0000008). +is_obsolete: true +consider: FOVT:0000008 [Term] id: UBERON:7500052 @@ -276490,21 +274148,16 @@ property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 [Term] id: UBERON:7500060 -name: line from trochlea of humerus to ventral tubercle of humerus -def: "An anatomical line of a humerus that connects the trochlea to the ventral tubercle." [https://orcid.org/0000-0003-2699-3066] -is_a: UBERON:0006800 ! anatomical line -intersection_of: UBERON:0006800 ! anatomical line -intersection_of: connects UBERON:7500034 ! distal-most point of trochlea of humerus -intersection_of: connects UBERON:7500048 ! proximal-most point of ventral tubercle of humerus -relationship: connects UBERON:7500034 ! distal-most point of trochlea of humerus -relationship: connects UBERON:7500048 ! proximal-most point of ventral tubercle of humerus -property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 +name: obsolete line from trochlea of humerus to ventral tubercle of humerus +def: "OBSOLETE An anatomical line of a humerus that connects the trochlea to the ventral tubercle." [https://orcid.org/0000-0003-2699-3066] +comment: No longer part of the pattern design for lengths of lines. Can be found in FOVT as humerus length from trochlea to ventral tubercle (FOVT:0000009). +is_obsolete: true +consider: FOVT:0000009 [Term] id: UBERON:7500061 name: trochlear ridge of humerus def: "The ridge of the trochlea on a humerus lies in the middle of the distal end of a humerus on the lateral side of the trochlea and the medial side of the capitulum (capitellum)." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0000144 ! trochlea of humerus @@ -276514,7 +274167,6 @@ id: UBERON:7500062 name: tibial tuberosity def: "The tibial tuberosity is on the anterior side of a tibia and is where a patella ligament attaches." [https://en.wikipedia.org/wiki/Tuberosity_of_the_tibia] synonym: "fossa digitalis" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection intersection_of: UBERON:0005813 ! tubercle @@ -276537,7 +274189,6 @@ id: UBERON:7500064 name: trochlear groove of talus def: "The furrow between the lateral and medial condyles of the trochlea of talus." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "trochlear groove of astragalus" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus @@ -276547,7 +274198,6 @@ id: UBERON:7500065 name: condyle of talus def: "An articular prominence of a talus that engages with the tibia." [http://orcid.org/0000-0003-2699-3066] synonym: "condyle of astragalus" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0002395 ! talus @@ -276577,7 +274227,6 @@ id: UBERON:7500068 name: ridge of medial condyle of talus def: "The crest of the medial condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of medial condyle of astragalus" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500066 ! medial condyle of talus @@ -276587,7 +274236,6 @@ id: UBERON:7500069 name: ridge of lateral condyle of talus def: "The crest of the lateral condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of lateral condyle of astragalus" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500067 ! lateral condyle of talus @@ -276597,7 +274245,6 @@ id: UBERON:7500070 name: sulcus tali def: "A depression that runs between the two facets of a talus that interact with a calcaneum." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "sulcus for flexor hallucis longus tendon" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus @@ -276611,7 +274258,6 @@ synonym: "muzzle" RELATED [] synonym: "snout" RELATED [] is_a: UBERON:0000475 ! organism subdivision property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 -relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0003128 ! cranium relationship: part_of UBERON:0004089 ! midface @@ -276660,7 +274306,6 @@ id: UBERON:7500077 name: trochlea of femur def: "A trochlea on the distal end of a femur that interacts with the patella." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/patellar-surface] synonym: "patellar surface of femur" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0004406 ! distal epiphysis of femur @@ -276670,7 +274315,6 @@ name: styloid process of radius def: "A condyle on the distal end and lateral side of a radius." [https://en.wikipedia.org/wiki/Radial_styloid_process] synonym: "radial condyle" EXACT [] synonym: "radial styloid process" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -276694,7 +274338,6 @@ id: UBERON:7500080 name: articular surface for carpals def: "The articular surface on the distal end of a radius that interacts with carpals." [https://orcid.org/0000-0003-2699-3066] synonym: "distal articular surface of radius" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -276704,7 +274347,6 @@ relationship: part_of UBERON:0004407 ! distal epiphysis of radius id: UBERON:7500081 name: articular surface for the tibia on the talus def: "Contact surface between the tibia and the talus located on the talus." [https://en.wikipedia.org/wiki/Talus_bone] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -276714,7 +274356,6 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500083 name: greater palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate, for the transmission of the descending palatine vessels and greater palatine nerve." [FMA:53173, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Greater_palatine_foramen&oldid=971687677] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone @@ -276723,11 +274364,22 @@ relationship: part_of UBERON:0001682 ! palatine bone id: UBERON:7500084 name: lesser palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate behind the greater palatine foramen. One or more lesser palatine foramina perforate the pyramidal process of the palatine bone and carry the lesser palatine nerve." [FMA:53167, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Lesser_palatine_foramina&oldid=870872639] -is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone +[Term] +id: UBERON:7500085 +name: endodontium +def: "A pulp-dentin complex or endodont that is part of a calcareous tooth." [https://en.wikipedia.org/wiki/Pulp_(tooth)] {comment="PMID: 29345716"} +synonym: "endodont" EXACT [] +synonym: "pulp-dentin complex" EXACT [] +is_a: UBERON:0010365 ! odontoid tissue +property_value: dc-contributor http://orcid.org/0000-0003-2699-3066 +relationship: has_part UBERON:0001751 ! dentine +relationship: has_part UBERON:0001754 ! dental pulp +relationship: part_of UBERON:0001091 ! calcareous tooth + [Term] id: UBERON:7500088 name: obsolete distal articular surface of radius @@ -276740,7 +274392,6 @@ id: UBERON:7500089 name: posterior articular facet for talus of calcaneus def: "Posterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "proximal facet of calcaneum" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -276750,7 +274401,6 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500091 name: middle articular facet for talus of calcaneus def: "Middle facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -276761,7 +274411,6 @@ id: UBERON:7500092 name: anterior articular facet for talus of calcaneus def: "Anterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "distal facet of calcaneum" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -276772,7 +274421,6 @@ id: UBERON:7500093 name: calcaneal body def: "The calcaneus body is the part of the bone not used for articulation with other bones." [https://orcid.org/0000-0003-2699-3066] synonym: "corpus calcanei" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus @@ -276783,7 +274431,6 @@ name: tubercle of calcaneus def: "A raised projection on the calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "calcaneal tubercle" EXACT [] synonym: "trochlear process of calcaneus" EXACT [] -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection intersection_of: UBERON:0005813 ! tubercle @@ -276850,7 +274497,6 @@ id: UBERON:8000004 name: central retina def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] is_a: UBERON:0000073 ! regional part of nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0000966 ! retina @@ -276891,7 +274537,6 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism id: UBERON:8000008 name: cementocyte lacuna def: "The small cavity within the cellular cementum that is occupied by a cementocyte cell body." [http://www.ncbi.nlm.nih.gov/pubmed/27029548, MP:0030555] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity property_value: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0001753 ! cementum @@ -277078,7 +274723,6 @@ name: metabolic zone of liver def: "Any of the metabolic zones found in the liver. Liver tissue is heterogenous at the level of morphometry and histochemistry. This heterogeneity is linked to the position of a cell within the functional unit of the tissue, which, in turn, is related to the blood supply: cells located in the upstream zone differ from those in the downstream zone with respect to subcellular structures, key enzymes, translocators, and receptors and, therefore, have different metabolic capacities. This is the basis for 'metabolic zonation', a concept first proposed in mammals for carbohydrate metabolism and later expanded to include amino acid and ammonia metabolism, xenobiotic metabolism, protective metabolism, and formation of plasma proteins." [http://www.ncbi.nlm.nih.gov/pubmed/8839925, https://doi.org/10.1016/S0968-0004(78)91764-4] synonym: "hepatic acinus metabolic zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/8839925] is_a: UBERON:0000063 ! organ subunit -is_a: UBERON:0004119 ! endoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0002107 ! liver relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -277128,7 +274772,6 @@ def: "Hepatic serous coat; peritoneal covering of the liver, enclosing almost al synonym: "serosa of liver" EXACT [FMA:15811] synonym: "tunica serosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/serosa+of+liver] {synonymtypedef="LATIN"} is_a: UBERON:0000042 ! serous membrane -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002107 ! liver property_value: dc-contributor https://orcid.org/0000-0003-2034-601X @@ -277143,7 +274786,6 @@ synonym: "subserosal tissue of liver" EXACT [] synonym: "subserous layer of liver" EXACT [] synonym: "tela subserosa (hepar)" EXACT [FMA:15821] synonym: "tela subserosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/subserosa+of+liver] -is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0012375 ! subserosa intersection_of: UBERON:0012375 ! subserosa intersection_of: part_of UBERON:0002107 ! liver @@ -277214,7 +274856,7 @@ id: UBERON:8410003 name: ductal plate def: "In human, ductal plate is a double-layered cylindrical structure of bile duct epithelium that surrounds the portal ramifications by the eighth gestational week. After approximately the 12th gestational week, remodelling of ductal plate begins, and maturity is attained by the end of gestation or early postnatal period." [http://orcid.org/0000-0002-7073-9172, http://www.ncbi.nlm.nih.gov/pubmed/28515578] subset: added_for_HCA -is_a: UBERON:0004119 ! endoderm-derived structure +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: existence_ends_during UBERON:0007220 ! late embryonic stage @@ -277303,7 +274945,7 @@ synonym: "fimbriae of fallopian tube" EXACT PLURAL [] synonym: "fimbriae of uterine tube" EXACT PLURAL [] xref: FMA:18308 xref: http://orcid.org/0000-0001-7505-5418 -is_a: UBERON:0003889 ! fallopian tube +is_a: UBERON:0013515 ! subdivision of oviduct property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0003889 ! fallopian tube relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -277337,7 +274979,6 @@ id: UBERON:8410013 name: afferent lymphatic vessel valve def: "A valve in an afferent lymphatic vessel. It manages the flow of lymphatic fluid into the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system." [http://orcid.org/0000-0003-4183-8865/] synonym: "valve of afferent lymphatic vessel" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034949 ! lymphatic valve intersection_of: UBERON:0034949 ! lymphatic valve intersection_of: part_of UBERON:0010396 ! afferent lymphatic vessel @@ -277477,7 +275118,6 @@ id: UBERON:8410024 name: intestinal junction def: "An anatomical junction between two parts of the intestine." [https://orcid.org/0000-0002-7073-9172] synonym: "junction of intestine" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0004921 ! subdivision of digestive tract @@ -277493,7 +275133,6 @@ def: "The region of the prostate gland anterior to the central and peripheral zo subset: added_for_HCA synonym: "prostate transition zone" EXACT [] synonym: "transition zone of human prostate" NARROW [] -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -277507,7 +275146,6 @@ def: "The region of the prostate that is located posterior to the central and tr subset: added_for_HCA synonym: "peripheral zone of human prostate" NARROW [] synonym: "prostate peripheral zone" EXACT [] -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -277521,7 +275159,6 @@ def: "The region of the prostate gland that is located between the peripheral an subset: added_for_HCA synonym: "central zone of human prostate" NARROW [] synonym: "prostate central zone" EXACT [] -is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland @@ -277583,7 +275220,6 @@ id: UBERON:8410032 name: trabecular sinus of lymph node def: "The trabecular sinus is the lymph-filled space outside the trabeculae between lobules of the lymph node. This is a continuation of the subcapsular sinus which receives the afferent vessels and is present beneath the capsule. This space is traversed by both reticular fibers and cells in the lymph." [http://orcid.org/0000-0003-4183-8865/, http://www.ncbi.nlm.nih.gov/pubmed/32491649, WikipediaVersioned:Lymph_node&oldid=1020495758] synonym: "lymph node trabecular sinus" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002195 ! trabecula of lymph node @@ -277719,10 +275355,7 @@ synonym: "airway submucosal gland" BROAD [] synonym: "bronchial submucosal gland" EXACT [] synonym: "submucosal bronchial gland" EXACT [] synonym: "submucosal bronchus gland" EXACT [] -xref: EFO:0010666 -is_a: UBERON:0004119 ! endoderm-derived structure -is_a: UBERON:0011148 ! submucosal gland -is_a: UBERON:0036225 ! respiratory system gland +is_a: UBERON:8410077 ! airway submucosal gland intersection_of: UBERON:0011148 ! submucosal gland intersection_of: part_of UBERON:0002185 ! bronchus property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -277810,6 +275443,7 @@ id: UBERON:8410050 name: anorectum def: "A subdivision of the digestive tract in humans that includes the rectum, the anal canal and the anus." [http://orcid.org/0000-0002-6826-8770, http://orcid.org/0000-0003-3440-1876, http://www.ncbi.nlm.nih.gov/pubmed/29742860, https://doi.org/10.1007/978-3-319-26938-2_8, https://doi.org/10.1148/rg.2015150037] synonym: "anorectal canal" NARROW [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: has_part UBERON:0000159 ! anal canal @@ -278024,9 +275658,11 @@ relationship: in_taxon NCBITaxon:8782 ! Aves [Term] id: UBERON:8410070 -name: levatores costarum +name: levator costarum def: "A chest muscle with a role in forceful inspiration. In human, there are twelve levatores costarum on either side of the chest; they are small tendinous and fleshy bundles arising from the ends of the transverse processes of the seventh cervical and upper eleven thoracic vertebrae. They pass obliquely downward and laterally, like the fibers of the intercostales externi, and each is inserted into the outer surface of the rib immediately below the vertebra from which it takes origin, between the tubercle and the angle (levatores costarum breves). Each of the four lower muscles divides into two fasciculi, one of which is inserted as above described; the other passes down to the second rib below its origin (levatores costarum longi)." [WikipediaVersioned:Levatores_costarum_muscles&oldid=876138804] -synonym: "levatores costarum muscle" EXACT [] +synonym: "levator costarum muscle" EXACT [] +synonym: "levatores costarum" EXACT [] +synonym: "levatores costarum muscles" EXACT [] synonym: "musculi levatores costarum" EXACT LATIN [] xref: FMA:71312 is_a: CARO:0000003 @@ -278037,19 +275673,105 @@ relationship: has_muscle_origin UBERON:0001077 ! transverse process of vertebra relationship: part_of RO:0002577 ! system relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens +[Term] +id: UBERON:8410071 +name: subcapsular sinus ceiling +def: "The section of the lymph node capsule that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [http://www.ncbi.nlm.nih.gov/pubmed/31402260] +synonym: "ceiling of subcapsular sinus of lymph node" EXACT [] +synonym: "floor of capsule of lymph node" EXACT [] +synonym: "subcapsular sinus of lymph node ceiling" EXACT [] +is_a: UBERON:0000064 ! organ part +relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: part_of UBERON:0002194 ! capsule of lymph node +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: UBERON:8410072 +name: subcapsular sinus floor +def: "The section of the lymph node cortex that faces the subcapsular sinus. In human, it's characterized by specific protein markers." [http://www.ncbi.nlm.nih.gov/pubmed/31402260] +synonym: "ceiling of cortex of lymph node" EXACT [] +synonym: "floor of subcapsular sinus of lymph node" EXACT [] +synonym: "subcapsular sinus of lymph node floor" EXACT [] +is_a: UBERON:0000064 ! organ part +relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: part_of UBERON:0002006 ! cortex of lymph node + [Term] id: UBERON:8410073 name: medullary region of kidney def: "A part of the kidney that comprises kidney pyramids and renal columns." [http://orcid.org/0000-0002-7073-9172] comment: Note that 'medullary region of kidney' is not synonymous with 'renal medulla'. The former covers kidney pyramids and renal columns, which are histologically different, while the latter is composed of kidney pyramids only. synonym: "kidney medullary region" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: has_part UBERON:0001284 ! renal column relationship: has_part UBERON:0004200 ! kidney pyramid relationship: part_of UBERON:0002113 ! kidney created_by: http://orcid.org/0000-0002-2825-0621 +[Term] +id: UBERON:8410074 +name: lymph node paracortical sinus +def: "A lymph node sinus intimately associated with paracortical cords that originate in the interfollicular cortex and extend into the medullary cords." [http://www.ncbi.nlm.nih.gov/pubmed/17067937, http://www.ncbi.nlm.nih.gov/pubmed/9176696] +synonym: "cortical sinus" RELATED [] +synonym: "lymphatic labyrinth" RELATED [] +synonym: "paracortical sinus" BROAD [] +synonym: "peripheral sinus" RELATED [] +is_a: UBERON:0004111 ! anatomical conduit +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: part_of UBERON:8410066 ! lymph node paracortex +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: UBERON:8410075 +name: lymph node paracortical cord +def: "Lymph node paracortical parenchyma containing dense networks of T cells, B cells, fibroblastic reticular cells, and dendritic cells." [http://www.ncbi.nlm.nih.gov/pubmed/17067937, http://www.ncbi.nlm.nih.gov/pubmed/49306] +synonym: "paracortical cord" BROAD [] +is_a: UBERON:0000353 ! parenchyma +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: part_of UBERON:8410066 ! lymph node paracortex +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens + +[Term] +id: UBERON:8410076 +name: glomus coccygeum +def: "A glomus-like dermal microanatomical structure found in human and placed in front of, or immediately below, the tip of the coccyx. Each glomus consists of one or more arterial segments that branch into a number of glomic arterioles surrounded by rows of round, uniform, epithelioid contractile cells, that drain into a collecting venous plexus." [http://www.ncbi.nlm.nih.gov/pubmed/28545163, http://www.ncbi.nlm.nih.gov/pubmed/30799440, https://orcid.org/0000-0002-1572-1316] +synonym: "coccygeal body" EXACT [FMA:15649] +synonym: "coccygeal gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] +synonym: "coccygeal glomus" EXACT [FMA:15649] +synonym: "gland of Luschka" EXACT [FMA:15649] +synonym: "glands of Luschka" EXACT [] +synonym: "glomus body" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/30799440] +synonym: "Luschka's gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] +is_a: UBERON:0010000 ! multicellular anatomical structure +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 + +[Term] +id: UBERON:8410077 +name: airway submucosal gland +def: "A submucosal gland found in a respiratory tract." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] +synonym: "respiratory tract submucosal gland" EXACT [] +synonym: "submucosal gland of respiratory tract" EXACT [] +xref: EFO:0010666 +is_a: UBERON:0011148 ! submucosal gland +is_a: UBERON:0036225 ! respiratory system gland +intersection_of: UBERON:0011148 ! submucosal gland +intersection_of: part_of UBERON:0000065 ! respiratory tract +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: part_of UBERON:0000065 ! respiratory tract + +[Term] +id: UBERON:8410078 +name: right lymphatic duct +def: "A great lymphatic vessel that empties lymph into one of the subclavian veins. In humans, there are two lymph ducts in the body: the right lymphatic duct and the thoracic duct. The right lymphatic duct drains lymph from the right upper limb, right side of thorax and right halves of head and neck. The thoracic duct drains lymph into the circulatory system at the left brachiocephalic vein between the left subclavian and left internal jugular veins." [http://en.wikipedia.org/wiki/Lymph_duct] +comment: This term ('right lymphatic duct') would not need a 'left' counterpart; the other great lymph duct in the human body is represented by UBERON:0001631 'thoracic duct'. +synonym: "ductus lymphaticus dexter" EXACT LATIN [] +xref: FMA:5832 +is_a: UBERON:0001473 ! lymphatic vessel +property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 +relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens + [Term] id: UBERON:8420000 name: hair of scalp @@ -278091,6 +275813,7 @@ name: cortical layer VIb def: "The deepest layer of the neocortex. While layer 6b is considered part of layer 6, it is distinct morphologically, genetically, and developmentally from the rest of layer 6. Neurons in L6b project to cortical targets and higher-order thalamus and develop from a precursor population that arises from the subplate." [http://www.ncbi.nlm.nih.gov/pubmed/32160552] synonym: "cerebral cortex layer 6b" EXACT [] synonym: "neocortex layer 6b" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0004035 ! cortical subplate relationship: part_of UBERON:0005395 ! cortical layer VI @@ -278475,6 +276198,7 @@ xref: by_means [Typedef] id: capable_of name: capable of +namespace: external namespace: protein def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] subset: ro-eco @@ -278704,7 +276428,7 @@ def: "x composed_primarily_of y iff: more than half of the mass of x is made fro xref: RO:0002473 domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity -is_a: has_part ! has_part +is_a: has_part ! has part [Typedef] id: conduit_for @@ -278820,6 +276544,12 @@ name: title xref: http://purl.org/dc/elements/1.1/title is_metadata_tag: true +[Typedef] +id: dcterms-date +name: date +xref: http://purl.org/dc/terms/date +is_metadata_tag: true + [Typedef] id: dcterms-isReferencedBy name: is referenced by @@ -278943,12 +276673,10 @@ comment: This is the transitive form of the develops from relation xref: RO:0002202 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant -holds_over_chain: part_of develops_from is_transitive: true is_a: developmentally_preceded_by ! developmentally preceded by is_a: has_developmental_contribution_from ! has developmental contribution from inverse_of: develops_into ! develops into -transitive_over: part_of ! part_of [Typedef] id: develops_from_part_of @@ -279191,7 +276919,7 @@ xref: RO:0002327 is_a: capable_of ! capable of inverse_of: enabled_by ! enabled by transitive_over: has_component_activity ! has component activity -transitive_over: has_part ! has_part +transitive_over: has_part ! has part [Typedef] id: enables_subfunction @@ -279225,7 +276953,7 @@ name: ends with def: "x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] xref: RO:0002230 is_transitive: true -is_a: has_part ! has_part +is_a: has_part ! has part is_a: temporally_related_to ! temporally related to [Typedef] @@ -279419,7 +277147,7 @@ namespace: protein def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] xref: RO:0002180 is_transitive: false -is_a: has_part ! has_part +is_a: has_part ! has part [Typedef] id: has_component_activity @@ -279533,7 +277261,7 @@ id: has_member name: has member def: "has member is a mereological relation between a collection and an item." [] xref: RO:0002351 -is_a: has_part ! has_part +is_a: has_part ! has part [Typedef] id: has_muscle_antagonist @@ -279582,6 +277310,12 @@ expand_assertion_to: "Class: EquivalentT is_metadata_tag: true is_class_level: true +[Typedef] +id: has_ontology_root_term +name: has ontology root term +xref: IAO:0000700 +is_metadata_tag: true + [Typedef] id: has_output name: has output @@ -279595,18 +277329,14 @@ inverse_of: output_of ! output of id: has_part name: has part name: has_part -namespace: chebi_ontology namespace: external namespace: protein namespace: quality def: "a core relation that holds between a whole and its part" [] -def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [] -comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam xref: BFO:0000051 -is_cyclic: false is_transitive: true is_a: overlaps ! overlaps @@ -279723,7 +277453,7 @@ domain: CARO:0000003 domain: UBERON:0000475 ! organism subdivision range: CARO:0000006 {http://purl.obolibrary.org/obo/IAO_0000116="This should be to a more restricted class, but not the Uberon class may be too restricted since it is a composition-based definition of skeleton rather than functional."} range: UBERON:0010912 ! subdivision of skeleton -is_a: has_part ! has_part +is_a: has_part ! has part inverse_of: skeleton_of ! skeleton of is_asymmetric: true @@ -280256,8 +277986,8 @@ name: never_in_taxon def: "S never_in_taxon T iff: S SubClassOf in_taxon only not T." [http://www.ncbi.nlm.nih.gov/pubmed/20973947] def: "x never in taxon T if and only if T is a class, and x does not instantiate the class expression \"in taxon some T\". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL." [] xref: RO:0002161 -expand_assertion_to: "?X DisjointWith RO_0002162 some ?Y " [] expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" [] +expand_assertion_to: "Class: ?X DisjointWith: RO_0002162 some ?Y " [] is_metadata_tag: true is_class_level: true @@ -280338,7 +278068,7 @@ subset: http://purl.obolibrary.org/obo/valid_for_gocam xref: BFO:0000050 is_transitive: true is_a: overlaps ! overlaps -inverse_of: has_part ! has_part +inverse_of: has_part ! has part [Typedef] id: part_of_developmental_precursor_of @@ -280738,7 +278468,7 @@ name: starts with def: "x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] xref: RO:0002224 is_transitive: true -is_a: has_part ! has_part +is_a: has_part ! has part is_a: temporally_related_to ! temporally related to [Typedef] From 7247bbb7557d38b0ba731a6d04e151a44039cb6b Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Fri, 1 Apr 2022 12:55:15 +0300 Subject: [PATCH 2/8] Update uberon.Makefile --- src/ontology/uberon.Makefile | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 3ea1ca3e0a..5a4b97ee7e 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -732,7 +732,7 @@ $(TMPDIR)/ext-merged-%.owl: ext.owl $(BRIDGEDIR)/bridges $(TMPDIR)/external-disj # TODO: add to Oort merged.obo: tmp/merged.owl - cp $< $@ + $(ROBOT) convert -i $< --check false -o $@.tmp.obo && mv $@.tmp.obo $@ $(REPORTDIR)/%-orphans: %.obo $(SCRIPTSDIR)/obo-grep.pl --neg -r "(is_a|intersection_of|is_obsolete):" $< | $(SCRIPTSDIR)/obo-grep.pl -r Term - | $(SCRIPTSDIR)/obo-grep.pl --neg -r "id: UBERON:(0001062|0000000)" - | $(SCRIPTSDIR)/obo-grep.pl -r Term - > $@.tmp && (egrep '^(id|name):' $@.tmp > $@ || echo ok) @@ -1251,12 +1251,15 @@ release-diff: #RELDIR=../.. +DEPLOY_GH=true + .PHONY: uberon uberon: $(MAKE) prepare_release IMP=false PAT=false BRI=true CLEANFILES=tmp/merged-uberon-edit.obo $(MAKE) copy_additional_files # Probably not needed anymore now that we put everything on GitHub $(MAKE) release-diff - $(MAKE) deploy_release GHVERSION="v$(TODAY)" --generate-notes + if [ $(DEPLOY_GH) = true ]; then $(MAKE) deploy_release GHVERSION="v$(TODAY)" --generate-notes; fi + .PHONY: copy_additional_files copy_additional_files: From 96c3bc96c4c7c915e24658e938884f0acb462b1f Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 5 Apr 2022 10:49:14 +0300 Subject: [PATCH 3/8] Update uberon-edit.obo --- src/ontology/uberon-edit.obo | 1 + 1 file changed, 1 insertion(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 0c31d17365..86a3d175c9 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -223948,6 +223948,7 @@ xref: RO:0002285 id: develops_from name: develops_from xref: RO:0002202 +holds_over_chain: part_of develops_from is_transitive: true is_a: has_developmental_contribution_from ! has developmental contribution from inverse_of: develops_into ! develops_into From 53b0e797308e832c8809c45b787e0bddc5492d53 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 5 Apr 2022 04:57:59 -0700 Subject: [PATCH 4/8] uberon.obo changes --- uberon.obo | 3442 +++++++++++++++++++++++++++++++++++++++++++++------- 1 file changed, 2997 insertions(+), 445 deletions(-) diff --git a/uberon.obo b/uberon.obo index bee6b01933..cc1cbd8f70 100644 --- a/uberon.obo +++ b/uberon.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2022-03-31 +data-version: releases/2022-04-05 subsetdef: 1_STAR "" subsetdef: 2_STAR "" subsetdef: 3_STAR "" @@ -31676,6 +31676,7 @@ relationship: negatively_regulates GO:0001525 ! angiogenesis [Term] id: GO:0016528 name: sarcoplasm +is_a: CARO:0000000 ! anatomical entity is_a: GO:0005737 ! cytoplasm intersection_of: GO:0005737 ! cytoplasm intersection_of: part_of CL:0000187 ! muscle cell @@ -33220,6 +33221,7 @@ is_a: GO:0030072 ! peptide hormone secretion [Term] id: GO:0036194 name: muscle cell projection +is_a: CARO:0000000 ! anatomical entity is_a: GO:0120025 ! plasma membrane bounded cell projection intersection_of: GO:0120025 ! plasma membrane bounded cell projection intersection_of: part_of CL:0000187 ! muscle cell @@ -33598,6 +33600,7 @@ is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0043209 name: myelin sheath +is_a: CARO:0000000 ! anatomical entity is_a: GO:0110165 ! cellular anatomical entity relationship: part_of CL:0000125 ! glial cell @@ -37402,6 +37405,7 @@ is_a: GO:0003014 ! renal system process [Term] id: GO:0097386 name: glial cell projection +is_a: CARO:0000000 ! anatomical entity is_a: GO:0120025 ! plasma membrane bounded cell projection intersection_of: GO:0120025 ! plasma membrane bounded cell projection intersection_of: part_of CL:0000125 ! glial cell @@ -37432,6 +37436,7 @@ is_a: GO:0044302 ! dentate gyrus mossy fiber [Term] id: GO:0097511 name: dendritic cell dendrite +is_a: CARO:0000000 ! anatomical entity is_a: GO:0120025 ! plasma membrane bounded cell projection intersection_of: GO:0120025 ! plasma membrane bounded cell projection intersection_of: part_of CL:0000451 ! dendritic cell @@ -43314,6 +43319,7 @@ xref: NCIT:C12311 xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA xref: UMLS:C0007874 {source="ncithesaurus:Cervix"} xref: VHOG:0001359 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001560 ! neck of organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001560 ! neck of organ @@ -43388,6 +43394,7 @@ is_a: CARO:0000003 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0002268 ! olfactory organ is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007608 ! sensory perception of smell relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system relationship: contributes_to_morphology_of UBERON:0001456 ! face @@ -43405,6 +43412,7 @@ subset: functional_classification subset: uberon_slim synonym: "chemosensory sensory organ" EXACT [FBbt:00005157] xref: FBbt:00005157 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ intersection_of: UBERON:0000020 ! sense organ intersection_of: capable_of GO:0007606 ! sensory perception of chemical stimulus @@ -43442,6 +43450,7 @@ xref: NCIT:C12608 xref: UMLS:C0022131 {source="ncithesaurus:Islet_of_Langerhans"} xref: VHOG:0000646 xref: XAO:0000159 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034922 ! cell cluster relationship: contributes_to_morphology_of UBERON:0000016 ! endocrine pancreas relationship: fma_set_term FMA:76489 @@ -43504,7 +43513,6 @@ xref: XAO:0000017 xref: ZFA:0000118 is_a: UBERON:0002368 {source="BTO", source="EFO", source="VHOG"} ! endocrine gland is_a: UBERON:0003296 ! gland of diencephalon -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010133 ! neuroendocrine gland relationship: capable_of_part_of GO:0007276 ! gamete generation relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon @@ -43591,6 +43599,7 @@ xref: UMLS:C1305921 {source="BIRNLEX:1111"} xref: VHOG:0000399 xref: XAO:0000178 xref: ZFA:0000142 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system @@ -43655,6 +43664,7 @@ xref: MA:0002850 xref: MAT:0000099 xref: MIAA:0000099 xref: NLXANAT:100301 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system @@ -43695,6 +43705,7 @@ xref: UMLS:C0039044 {source="BIRNLEX:2516"} xref: UMLS:C1269646 {source="BIRNLEX:2516"} xref: VHOG:0000384 xref: ZFA:0001576 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 {source="FMA", source="MA", source="ZFA-modified-from-isa"} ! autonomic nervous system @@ -43834,6 +43845,7 @@ xref: Compound:eye xref: FBbt:00004508 xref: HAO:0000217 xref: TGMA:0000024 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0015165 ! multi-unit eye intersection_of: UBERON:0000970 ! eye intersection_of: composed_primarily_of UBERON:0000971 ! ommatidium @@ -44318,6 +44330,7 @@ synonym: "ovarian follicle antrum" EXACT [GO:0001548] xref: EMAPA:37867 {source="MA:th"} xref: FMA:18675 xref: Follicular:antrum +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: location_of UBERON:0000038 ! follicular fluid @@ -44470,6 +44483,7 @@ xref: VHOG:0000222 xref: XAO:0000210 xref: ZFA:0000200 is_a: UBERON:0001800 {source="MA"} ! sensory ganglion +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: extends_fibers_into UBERON:0001780 ! spinal nerve intersection_of: extends_fibers_into UBERON:0002261 ! dorsal root of spinal cord @@ -44524,7 +44538,6 @@ is_a: UBERON:0010001 {source="https://github.com/obophenotype/uberon/issues/702" disjoint_from: UBERON:0002420 {inconsistent_with="BTO"} ! basal ganglion relationship: composed_primarily_of UBERON:0003714 {source="EHDAA2"} ! neural tissue property_value: dc-contributor https://github.com/cmungall -relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0003869 ! presumptive ganglion relationship: immediate_transformation_of UBERON:0003869 {source="Bgee:AN"} ! presumptive ganglion relationship: part_of UBERON:0001016 ! nervous system @@ -44590,6 +44603,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245475003 xref: NCIT:C33848 xref: UMLS:C0227794 {source="ncithesaurus:Vaginal_Fornix"} xref: Vaginal:fornix +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity disjoint_from: UBERON:0000052 ! fornix of brain relationship: part_of UBERON:0000996 ! vagina @@ -44662,6 +44676,7 @@ xref: UMLS:C0450295 {source="ncithesaurus:Macula_Lutea"} xref: UMLS:C0450295 {source="BIRNLEX:2540"} xref: UMLS:C1284755 {source="BIRNLEX:2540"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0000054 ! macula relationship: part_of UBERON:0000966 ! retina @@ -44682,6 +44697,7 @@ xref: MESH:D008267 xref: TAO:0000386 xref: ZFA:0000386 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part GO:0070451 ! cell hair relationship: part_of UBERON:0001846 ! internal ear @@ -44962,8 +44978,8 @@ xref: FMA:265130 xref: http://www.snomedbrowser.com/Codes/Details/361110005 xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA xref: VHOG:0000393 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001005 ! respiratory airway +is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0007026 {source="NCBIBook:NBK10107"} ! presumptive gut relationship: develops_from UBERON:0008947 ! respiratory primordium relationship: part_of UBERON:0001004 ! respiratory system @@ -45119,6 +45135,7 @@ synonym: "subdivision of respiratory tract" RELATED [] xref: EMAPA:16737 xref: FMA:45660 xref: MA:0000434 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: part_of UBERON:0000065 ! respiratory tract @@ -45136,6 +45153,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518256 xref: http://www.snomedbrowser.com/Codes/Details/25087005 xref: NCIT:C13040 xref: UMLS:C1518256 {source="ncithesaurus:Nervous_System_Part"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001016 ! nervous system @@ -45222,6 +45240,7 @@ xref: FMA:87656 xref: http://linkedlifedata.com/resource/umls/id/C1515087 xref: NCIT:C34309 xref: UMLS:C1515087 {source="ncithesaurus:Surface_Ectoderm"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000922 ! embryo @@ -45442,7 +45461,6 @@ xref: VHOG:0000541 is_a: CARO:0000003 is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac -is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct relationship: developmentally_induced_by UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme relationship: develops_from UBERON:0003074 {source="EHDAA2"} ! mesonephric duct @@ -45464,6 +45482,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/361474003 xref: MESH:A16.254.270.550 xref: NCIT:C34212 xref: UMLS:C0026573 {source="ncithesaurus:Morula"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000922 ! embryo relationship: existence_ends_during UBERON:0000107 ! cleavage stage relationship: existence_starts_during UBERON:0000107 ! cleavage stage @@ -45501,6 +45520,7 @@ xref: UMLS:C0043519 {source="ncithesaurus:Zona_Pellucida"} xref: VHOG:0000720 xref: ZFA:0001111 xref: Zona:pellucida +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: bounding_layer_of CL:0000023 ! oocyte relationship: has_part CHEBI:17089 ! glycoprotein @@ -45594,6 +45614,7 @@ xref: UMLS:C1512561 {source="ncithesaurus:Hypoblast"} xref: VHOG:0001222 xref: XAO:0003044 xref: ZFA:0000117 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm @@ -45699,6 +45720,7 @@ xref: http://en.wikipedia.org/wiki/Cardiac_neural_crest xref: TAO:0002173 xref: XAO:0004190 xref: ZFA:0001648 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue property_value: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0002342 ! neural crest @@ -45714,6 +45736,7 @@ xref: AAO:0000045 xref: BTO:0001695 xref: http://en.wikipedia.org/wiki/Blastopore xref: XAO:0000208 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure property_value: dc-contributor https://github.com/ANiknejad property_value: dc-contributor https://github.com/cmungall @@ -45737,6 +45760,7 @@ xref: MA:0003098 xref: NCIT:C34021 xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA xref: UMLS:C0225752 {source="ncithesaurus:Lung_Lobe"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe relationship: contributes_to_morphology_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung @@ -45751,6 +45775,7 @@ synonym: "pulmonary vasculature" EXACT [FMA:73750] synonym: "vascular network of lung" EXACT [OBOL:automatic] synonym: "vasculature of lung" EXACT [OBOL:automatic] xref: FMA:73750 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -46001,9 +46026,9 @@ xref: EMAPA:35521 xref: FMA:27533 xref: http://www.snomedbrowser.com/Codes/Details/201609008 xref: MA:0001782 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003580 ! lower respiratory tract connective tissue is_a: UBERON:0003837 ! thoracic segment connective tissue -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002048 ! lung relationship: contributes_to_morphology_of UBERON:0002048 ! lung @@ -46023,7 +46048,6 @@ synonym: "pulmonary epithelium" RELATED [BTO:0001653] xref: BTO:0001653 xref: EMAPA:32860 xref: MA:0001783 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004815 ! lower respiratory tract epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002048 ! lung @@ -46037,6 +46061,7 @@ name: lung saccule def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] subset: pheno_slim is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: has_part CL:0000322 ! pneumocyte relationship: part_of UBERON:0002299 {source="GO"} ! alveolus of lung @@ -46052,6 +46077,7 @@ synonym: "tracheobronchial tree segment" NARROW [FMA:12224] xref: EMAPA:37946 {source="MA:th"} xref: FMA:12224 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0000065 ! respiratory tract relationship: has_part UBERON:0000483 ! epithelium @@ -46077,8 +46103,8 @@ xref: NCIT:C34282 xref: Respiratory:bud xref: UMLS:C1514420 {source="ncithesaurus:Primary_Bronchial_Bud"} xref: UMLS:C1514897 {source="ncithesaurus:Respiratory_Diverticulum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud +is_a: UBERON:0005911 ! endo-epithelium relationship: adjacent_to UBERON:0004872 ! splanchnic layer of lateral plate mesoderm relationship: develops_from UBERON:0005597 ! lung primordium relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium @@ -46107,6 +46133,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0005854 xref: NCIT:C13194 xref: nlx_subcell:100205 xref: UMLS:C0005854 {source="ncithesaurus:Blood-Brain_Barrier"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0000955 ! brain @@ -46126,6 +46153,7 @@ xref: NCIT:C33302 xref: NCIT:C41407 xref: NLXANAT:090205 xref: UMLS:C0205890 {source="ncithesaurus:Perineurium"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: bounding_layer_of UBERON:0001019 ! nerve fasciculus relationship: has_part GO:0005581 ! collagen trimer @@ -46144,6 +46172,7 @@ synonym: "neural fiber bundle" EXACT [] xref: CARO:0001001 xref: FBbt:00005099 xref: NLX:147821 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: has_part GO:0043005 ! neuron projection relationship: part_of UBERON:0001016 ! nervous system @@ -46160,6 +46189,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/15931004 xref: NCIT:C32518 xref: NLXANAT:090202 xref: UMLS:C0205888 {source="ncithesaurus:Endoneurium"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006804 {source="FMA"} ! reticular tissue relationship: bounding_layer_of UBERON:0006134 ! nerve fiber relationship: located_in UBERON:0000121 ! perineurium @@ -46180,6 +46210,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/64482002 xref: NCIT:C32528 xref: NLXANAT:090203 xref: UMLS:C0205889 {source="ncithesaurus:Epineurium"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: surrounds UBERON:0001021 ! nerve @@ -46247,15 +46278,12 @@ xref: MA:0001014 xref: NCIT:C12898 xref: UMLS:C0228740 {source="ncithesaurus:Facial_Nerve_Nucleus"} xref: VHOG:0001412 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0006331 ! brainstem nucleus is_a: UBERON:0009662 ! hindbrain nucleus intersection_of: UBERON:0000126 ! cranial nerve nucleus intersection_of: extends_fibers_into UBERON:0001647 ! facial nerve relationship: contributes_to_morphology_of UBERON:0000988 ! pons -relationship: develops_from UBERON:0001016 ! nervous system -relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010123 ! future facial nucleus relationship: extends_fibers_into UBERON:0001647 ! facial nerve relationship: immediate_transformation_of UBERON:0010123 {evidence="definitional"} ! future facial nucleus @@ -46273,7 +46301,9 @@ synonym: "olive body" EXACT [] xref: BTO:0002299 xref: http://www.snomedbrowser.com/Codes/Details/279293003 xref: Olivary:body +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -46289,6 +46319,7 @@ xref: EMAPA:36272 xref: FMA:23997 xref: http://www.snomedbrowser.com/Codes/Details/280735005 xref: Transverse:foramen +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 {source="FMA"} ! anatomical conduit is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0001588 ! vertebral vein @@ -46305,6 +46336,7 @@ synonym: "trochlea humeri" EXACT [http://en.wikipedia.org/wiki/Trochlea_of_humer xref: FMA:23370 xref: http://en.wikipedia.org/wiki/Trochlea_of_humerus xref: http://www.snomedbrowser.com/Codes/Details/282817004 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0004404 ! distal epiphysis of humerus @@ -46388,8 +46420,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/361385000 xref: MA:0001712 xref: TAO:0001113 xref: ZFA:0001113 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000119 ! cell layer intersection_of: composed_primarily_of CL:0000503 ! theca cell @@ -46415,6 +46447,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/258767003 xref: MA:0001713 xref: Theca:externa is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: bounding_layer_of UBERON:0000155 ! theca cell layer relationship: has_part GO:0005581 ! collagen trimer @@ -46438,6 +46471,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/258869006 xref: MA:0001714 xref: Theca_interna is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: contributes_to_morphology_of UBERON:0000155 ! theca cell layer relationship: part_of UBERON:0000155 ! theca cell layer @@ -46560,6 +46594,7 @@ xref: UMLS:C0008987 {source="ncithesaurus:Cloaca"} xref: VHOG:0001186 xref: XAO:0000244 xref: ZFA:0005781 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0001555 {source="ZFA"} ! digestive tract @@ -46576,7 +46611,6 @@ xref: Cloaca:(embryology) xref: EHDAA2:0000256 xref: EHDAA:4895 xref: EMAPA:27573 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000162 ! cloaca relationship: has_developmental_contribution_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000922 ! embryo @@ -46664,7 +46698,6 @@ xref: VHOG:0000812 xref: XAO:0003029 xref: ZFA:0000547 xref: ZFA:0000590 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 {notes="the mouth contains structures such as jaw skeleton that may not strictly be considered tract parts"} ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: proximalmost_part_of UBERON:0001555 ! digestive tract @@ -46684,6 +46717,7 @@ synonym: "oral fissure" EXACT [FMA:59806] synonym: "oral orifice" EXACT [FMA:59806] synonym: "oral part of face" RELATED [] xref: FMA:59806 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000165 ! mouth @@ -46719,6 +46753,7 @@ xref: VHOG:0000188 xref: WBbt:0005255 xref: XAO:0000126 xref: ZFA:0001027 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000165 ! mouth @@ -46916,7 +46951,6 @@ is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000179 ! haemolymphatic fluid property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/tmeehan -relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0006596 ! presumptive blood relationship: has_part CL:0000232 {source="CL:tm"} ! erythrocyte relationship: has_part UBERON:0001969 ! blood plasma @@ -46969,6 +47003,7 @@ synonym: "radial neck" EXACT [FMA:23479] xref: FMA:23479 xref: galen:NeckOfRadius xref: http://www.snomedbrowser.com/Codes/Details/181942005 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -46999,6 +47034,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0458308 xref: http://www.snomedbrowser.com/Codes/Details/279165009 xref: NCIT:C32290 xref: UMLS:C0458308 {source="ncithesaurus:Cerebral_Gyrus"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034768 ! morphological feature property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/RDruzinsky @@ -47028,7 +47065,6 @@ id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [https://orcid.org/0000-0002-6601-2165] xref: FBbt:00007091 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000120 ! blood brain barrier intersection_of: UBERON:0000120 ! blood brain barrier intersection_of: composed_primarily_of CL:0000125 ! glial cell @@ -47058,6 +47094,7 @@ xref: TAO:0000505 xref: TAO:0007007 xref: ZFA:0000505 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: part_of UBERON:0001893 ! telencephalon relationship: present_in_taxon NCBITaxon:7762 {source="http://www.ncbi.nlm.nih.gov/pubmed/8932866"} ! Myxinidae @@ -47079,6 +47116,7 @@ xref: EFO:0003522 xref: TAO:0000304 xref: ZFA:0000304 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0002-6601-2165 relationship: dorsal_to UBERON:0000203 {notes="separated by cell-free region"} ! pallium relationship: part_of UBERON:0001893 ! telencephalon @@ -47275,6 +47313,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/361831006 xref: NCIT:C32158 xref: ncithesaurus:Atlanto-occipital_Joint-Atlanto xref: UMLS:C0004169 {source="ncithesaurus:Atlanto-occipital_Joint"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0002217 ! synovial joint @@ -47292,6 +47331,7 @@ name: supraauricular point def: "A craniometric point on the posterior root of the zygomatic process of the temporal bone directly above the auricular point." [http://www.medilexicon.com/medicaldictionary.php?t=70620] synonym: "supra-auricular part of head" EXACT [FMA:224222] xref: FMA:224222 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0004655 ! zygomatic process of temporal bone @@ -47312,7 +47352,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/280366002 xref: NCIT:C34102 xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"} xref: VHOG:0000855 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012466 ! extraembryonic cavity is_a: UBERON:0012467 ! enclosed anatomical space relationship: contains UBERON:0000173 ! amniotic fluid @@ -47387,7 +47426,7 @@ xref: MESH:A16.254.403.277 xref: NCIT:C12365 xref: UMLS:C0002630 {source="ncithesaurus:Amnion"} xref: VHOG:0000721 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold relationship: has_developmental_contribution_from UBERON:0000924 {source="ISBN:0073040584-table5.4"} ! ectoderm @@ -47560,6 +47599,7 @@ xref: GAID:689 xref: http://www.snomedbrowser.com/Codes/Details/362311001 xref: MESH:D013346 xref: Subarachnoid:space +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002361 ! pia mater @@ -47633,6 +47673,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/308841008 xref: NCIT:C33919 xref: UMLS:C0230960 {source="ncithesaurus:Cytotrophoblast"} xref: VHOG:0000683 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: adjacent_to UBERON:0000371 ! syncytiotrophoblast relationship: adjacent_to UBERON:0000453 ! decidua basalis @@ -47725,6 +47766,7 @@ synonym: "wall of digestive tract" EXACT [] synonym: "wall of gut" EXACT [FMA:45653] xref: BTO:0000547 xref: FMA:45653 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001555 ! digestive tract @@ -47744,6 +47786,8 @@ xref: NCIT:C32707 xref: NCIT:C32711 xref: UMLS:C1182707 {source="ncithesaurus:Hair_Root"} is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001037 ! strand of hair [Term] @@ -47782,7 +47826,6 @@ xref: BTO:0000635 xref: FMA:74596 xref: http://www.snomedbrowser.com/Codes/Details/328639002 xref: http://www.snomedbrowser.com/Codes/Details/5023006 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002371 ! bone marrow intersection_of: UBERON:0002371 ! bone marrow intersection_of: composed_primarily_of CL:0000136 ! fat cell @@ -47898,6 +47941,7 @@ xref: BTO:0000894 xref: FMA:62977 xref: http://en.wikipedia.org/wiki/Myelin xref: ncithesaurus:Myelin +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: has_part CHEBI:36498 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! galactosylceramide relationship: has_part CHEBI:64583 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! sphingomyelin @@ -47931,6 +47975,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0026973 xref: MESH:D009186 xref: NCIT:C13261 xref: UMLS:C0026973 {source="ncithesaurus:Myelin_Sheath"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: composed_primarily_of GO:0043209 ! myelin sheath relationship: has_part UBERON:0000345 ! myelin @@ -47984,7 +48029,6 @@ xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA xref: Ophthalmic:nerve xref: UMLS:C0029082 {source="ncithesaurus:Ophthalmic_Nerve"} xref: VHOG:0001349 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0011779 ! nerve of head region relationship: branching_part_of UBERON:0001645 {notes="may be a distinct nerve in teleosts", source="multiple"} ! trigeminal nerve @@ -48088,6 +48132,7 @@ xref: EMAPA:26957 xref: FMA:55031 xref: http://www.snomedbrowser.com/Codes/Details/362121003 xref: MA:0003143 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004785 ! respiratory system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001042 ! chordate pharynx @@ -48201,6 +48246,7 @@ xref: MESH:D007679 xref: NCIT:C12740 xref: Renal:medulla xref: UMLS:C0022664 {source="ncithesaurus:Renal_Medulla"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002113 ! kidney @@ -48380,6 +48426,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1135936 xref: http://www.snomedbrowser.com/Codes/Details/256965005 xref: NCIT:C33918 xref: UMLS:C1135936 {source="ncithesaurus:Syncytiotrophoblast"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: composed_primarily_of CL:0000525 ! syncytiotrophoblast cell relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast @@ -48875,6 +48922,7 @@ xref: MESH:D013136 xref: Spiral:ganglion xref: VHOG:0001183 is_a: UBERON:0001714 ! cranial ganglion +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0004727 ! cochlear nerve relationship: extends_fibers_into UBERON:0004727 ! cochlear nerve @@ -49012,6 +49060,7 @@ xref: http://en.wikipedia.org/wiki/Ramus_of_the_mandible xref: http://www.snomedbrowser.com/Codes/Details/361739000 xref: MA:0002815 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001684 ! mandible @@ -49028,6 +49077,7 @@ xref: CALOHA:TS-0660 xref: FMA:59644 xref: http://www.snomedbrowser.com/Codes/Details/278940000 xref: Nasal:vestibule +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001707 ! nasal cavity @@ -49074,6 +49124,7 @@ xref: FMA:6258 xref: http://www.snomedbrowser.com/Codes/Details/181099004 xref: Sympathetic:trunk xref: XAO:0000211 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0000013 {source="FMA-abduced-lr"} ! sympathetic nervous system @@ -49142,6 +49193,7 @@ xref: BTO:0001846 xref: FMA:62652 xref: http://www.snomedbrowser.com/Codes/Details/30802009 is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -49166,6 +49218,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1911 xref: MBA:669 xref: MESH:A08.186.211.730.885.213.571.735 xref: Visual:cortex +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0002021 {source="BTO"} ! occipital lobe @@ -49197,8 +49250,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/320101005 xref: NCIT:C32710 xref: NCIT:C83189 xref: UMLS:C0221931 {source="ncithesaurus:Dermal_Papilla"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: composed_primarily_of CL:0000057 ! fibroblast relationship: part_of UBERON:0001992 ! papillary layer of dermis @@ -49256,6 +49309,7 @@ xref: GAID:692 xref: http://www.snomedbrowser.com/Codes/Details/362308002 xref: MESH:D013355 xref: Subdural:space +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0002362 ! arachnoid mater relationship: adjacent_to UBERON:0002363 ! dura mater @@ -49323,6 +49377,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227203 xref: http://www.snomedbrowser.com/Codes/Details/268426007 xref: NCIT:C32659 xref: UMLS:C0227203 {source="ncithesaurus:Gastric_Pit"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001199 {source="BTO"} ! mucosa of stomach @@ -49334,6 +49389,7 @@ synonym: "intermediate trophoblast" EXACT [FMA:86561] synonym: "interstitial trophoblast" RELATED [BTO:0002366] xref: BTO:0002366 xref: FMA:86561 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 {source="BTO"} ! trophoblast @@ -49368,9 +49424,11 @@ xref: http://linkedlifedata.com/resource/umls/id/C1179826 xref: MA:0001737 xref: NCIT:C13103 xref: UMLS:C1179826 {source="ncithesaurus:Prostatic_Epithelium"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002367 ! prostate gland relationship: part_of UBERON:0002367 ! prostate gland @@ -49390,6 +49448,7 @@ xref: EMAPA:35446 xref: FMA:77597 xref: MA:0001147 is_a: UBERON:0001816 ! autonomic nerve plexus +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001810 ! nerve plexus intersection_of: part_of UBERON:0002005 ! enteric nervous system relationship: part_of UBERON:0002005 ! enteric nervous system @@ -49518,7 +49577,9 @@ name: arachnoid barrier layer def: "The arachnoid barrier layer is a part of the arachnoid meningeal layer. It is formed by tight junctions between the endothelial cells of cerebral capillaries in the arachnoid mater." [BTO:0002498] xref: BTO:0002498 xref: FMA:231559 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of GO:0005923 ! bicellular tight junction relationship: part_of UBERON:0000201 {source="cjm"} ! endothelial blood brain barrier relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater @@ -49541,6 +49602,7 @@ xref: Arachnoid:trabeculae xref: BTO:0002500 xref: FMA:83979 is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002362 ! arachnoid mater relationship: has_part GO:0005581 ! collagen trimer @@ -49627,8 +49689,8 @@ name: habenular trigone def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [http://en.wikipedia.org/wiki/Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] -synonym: "trigonum habenulae" RELATED LATIN [http://en.wikipedia.org/wiki/Habenular_trigone] synonym: "trigonum habenulae" RELATED [BTO:0002700] +synonym: "trigonum habenulae" RELATED LATIN [http://en.wikipedia.org/wiki/Habenular_trigone] xref: BAMS:hbt xref: BTO:0002700 xref: FMA:74868 @@ -49718,6 +49780,7 @@ xref: MESH:A08.186.211.730.885.213.270.700 xref: NLXANAT:090801 xref: Prefrontal:cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex relationship: part_of UBERON:0001870 ! frontal cortex @@ -49754,6 +49817,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0815008 xref: NCIT:C98712 xref: UMLS:C0815008 {source="ncithesaurus:Cerebral_Subcortex"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000955 ! brain [Term] @@ -49795,6 +49859,7 @@ xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery intersection_of: supplies UBERON:0001675 ! trigeminal ganglion @@ -49812,6 +49877,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227837 xref: http://www.snomedbrowser.com/Codes/Details/264460007 xref: NCIT:C12309 xref: UMLS:C0227837 {source="ncithesaurus:Endocervix"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000064 ! organ part @@ -49831,6 +49897,7 @@ synonym: "wall of uterus" EXACT [OBOL:automatic] xref: BTO:0003083 xref: FMA:17560 xref: http://www.snomedbrowser.com/Codes/Details/245485002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall @@ -50297,6 +50364,7 @@ xref: UMLS:C0229962 {source="ncithesaurus:Body_Part"} xref: VHOG:0001758 xref: XAO:0003013 xref: ZFA:0001308 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure relationship: has_part UBERON:0000075 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! subdivision of skeletal system relationship: has_part UBERON:0034929 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! external soft tissue zone @@ -50374,6 +50442,7 @@ xref: UMLS:C1282438 {source="ncithesaurus:Extraembryonic_Structure"} xref: VHOG:0000292 xref: XAO:0004005 xref: ZFA:0000020 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: part_of UBERON:0016887 ! entire extraembryonic component @@ -51017,6 +51086,7 @@ xref: FBbt:00000038 xref: TAO:0000329 xref: TGMA:0000681 xref: ZFA:0000329 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure disjoint_from: UBERON:0003124 ! chorion membrane relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa @@ -51314,6 +51384,7 @@ xref: TGMA:0000135 xref: UMLS:C1514977 {source="ncithesaurus:Stomodeum"} xref: XAO:0000269 xref: ZFA:0001290 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: only_in_taxon NCBITaxon:6072 ! Eumetazoa relationship: part_of UBERON:0000924 ! ectoderm @@ -51580,7 +51651,6 @@ xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve"} xref: VHOG:0000543 xref: XAO:0000188 xref: ZFA:0000435 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0034713 ! cranial neuron projection bundle @@ -52051,7 +52121,6 @@ xref: PBA:128011354 xref: UMLS:C0007776 {source="BIRNLEX:1494"} xref: UMLS:C0007776 {source="ncithesaurus:Cortex"} xref: VHOG:0000722 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0016548 {source="FMA"} ! central nervous system gray matter layer relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory @@ -52536,6 +52605,7 @@ xref: NCIT:C12793 xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA xref: UMLS:C0038293 {source="ncithesaurus:Sternum"} xref: VHOG:0000856 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010363 {source="ISBN:0073040584"} ! endochondral element relationship: connected_to UBERON:0002228 ! rib @@ -52620,6 +52690,7 @@ xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA xref: UMLS:C0032225 {source="ncithesaurus:Pleural_Tissue"} xref: VHOG:0000394 is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: has_part UBERON:0002400 ! parietal pleura intersection_of: has_part UBERON:0002401 ! visceral pleura @@ -52717,6 +52788,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/182047004 xref: MA:0002821 xref: NCIT:C33814 xref: UMLS:C0162370 {source="ncithesaurus:Trochanter"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: contributes_to_morphology_of UBERON:0000981 ! femur @@ -52858,7 +52930,6 @@ synonym: "wing of thorax" RELATED [OBOL:automatic] xref: FBbt:00004729 xref: HAO:0001089 xref: TGMA:0000196 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000023 ! wing intersection_of: UBERON:0000023 ! wing intersection_of: develops_from UBERON:0000939 ! imaginal disc @@ -52904,7 +52975,6 @@ xref: http://en.wikipedia.org/wiki/Haltere xref: MAT:0000203 xref: MIAA:0000203 xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000026 {source="FBbt"} ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of UBERON:0000914 ! organismal segment @@ -52950,6 +53020,7 @@ xref: UMLS:C0032639 {source="ncithesaurus:Pons_Varolii"} xref: UMLS:C1280999 {source="BIRNLEX:733"} xref: VHOG:0001176 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001895 ! metencephalon relationship: contributes_to_morphology_of UBERON:0002298 ! brainstem relationship: dubious_for_taxon NCBITaxon:7955 ! Danio rerio @@ -53234,6 +53305,7 @@ xref: MAT:0000168 xref: MIAA:0000168 xref: TGMA:0000560 xref: WBbt:0005319 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ is_a: UBERON:0005156 ! reproductive structure relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -53812,6 +53884,7 @@ xref: FMA:33760 xref: http://en.wikipedia.org/wiki/Body_of_ulna xref: http://www.snomedbrowser.com/Codes/Details/302520004 xref: NCIT:C120676 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001424 ! ulna @@ -53845,6 +53918,7 @@ xref: FMA:33773 xref: galen:HeadOfRadius xref: http://en.wikipedia.org/wiki/Head_of_radius xref: http://www.snomedbrowser.com/Codes/Details/181941003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint @@ -54051,7 +54125,6 @@ is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 {source="FBbt", source="cjm"} ! organ system subdivision relationship: develops_from UBERON:0001049 {gci_relation="part_of", gci_filler="NCBITaxon:7742", evidence="definitional"} ! neural tube relationship: develops_from UBERON:0016879 ! future central nervous system -relationship: develops_from UBERON:0016880 ! future nervous system relationship: immediate_transformation_of UBERON:0016879 {source="Bgee:AN"} ! future central nervous system relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001016 ! nervous system @@ -54285,6 +54358,7 @@ xref: FMA:33782 xref: http://en.wikipedia.org/wiki/Body_of_radius xref: http://www.snomedbrowser.com/Codes/Details/302518002 xref: NCIT:C120674 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001423 ! radius bone @@ -54372,6 +54446,7 @@ xref: TAO:0000282 xref: VHOG:0001674 xref: XAO:0003194 xref: ZFA:0000282 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: capable_of_part_of GO:0007600 ! sensory perception relationship: part_of UBERON:0004456 ! entire sense organ system @@ -54444,6 +54519,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/50870008 xref: MA:0001499 xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA is_a: UBERON:0002209 {source="FMA"} ! fibrous joint +is_a: UBERON:0010313 ! neural crest-derived structure relationship: connects UBERON:0001091 ! calcareous tooth relationship: connects UBERON:0004103 ! alveolar ridge relationship: part_of UBERON:0001708 ! jaw skeleton @@ -54533,7 +54609,6 @@ xref: NCIT:C14128 xref: UMLS:C0043425 {source="ncithesaurus:Yolk_Sac"} xref: VHOG:0000830 xref: Yolk:sac -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005292 ! extraembryonic tissue is_a: UBERON:0005631 {seeAlso="https://github.com/obophenotype/uberon/issues/635"} ! extraembryonic membrane is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac @@ -54601,7 +54676,6 @@ xref: UMLS:C0031354 {source="ncithesaurus:Pharynx"} xref: VHOG:0000462 xref: XAO:0003227 xref: ZFA:0000056 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006562 ! pharynx relationship: continuous_with UBERON:0001043 {gci_relation="part_of", gci_filler="NCBITaxon:7742"} ! esophagus relationship: develops_from UBERON:0009145 {source="EHDAA2"} ! pharyngeal region of foregut @@ -54648,7 +54722,6 @@ xref: UMLS:C0014876 {source="ncithesaurus:Esophagus"} xref: VHOG:0000450 xref: XAO:0000127 xref: ZFA:0000204 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 {source="FMA", source="MA"} ! organ is_a: UBERON:0004921 ! subdivision of digestive tract is_a: UBERON:0005178 ! thoracic cavity element @@ -54758,7 +54831,6 @@ xref: TGMA:0001020 xref: UMLS:C0231053 {source="ncithesaurus:Hindgut"} xref: VHOG:0000459 xref: XAO:0000104 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0003104 {source="Wikipedia"} ! mesenchyme relationship: part_of RO:0002577 ! system @@ -54876,6 +54948,7 @@ xref: NCIT:C12246 xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA xref: UMLS:C0020629 {source="ncithesaurus:Hypopharynx"} xref: VHOG:0000445 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: continuous_with UBERON:0013472 ! upper esophagus relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx @@ -55020,6 +55093,7 @@ xref: MESH:D024521 xref: MIAA:0000336 xref: Mushroom:body is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory relationship: capable_of_part_of GO:0008355 {source="Wikipedia"} ! olfactory learning @@ -55225,6 +55299,7 @@ xref: NCIT:C32577 xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA xref: UMLS:C0224521 {source="ncithesaurus:Facet_Joint"} xref: Zygapophysial:joint +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0002217 ! synovial joint intersection_of: connects UBERON:0001079 ! prezygapophysis @@ -55457,7 +55532,7 @@ xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA xref: TAO:0000126 xref: UMLS:C0223084 {source="ncithesaurus:Vertebral_Body"} xref: ZFA:0000126 -is_a: UBERON:0001474 ! bone element +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0016491 ! vertebral centrum element intersection_of: UBERON:0016491 ! vertebral centrum element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -56456,6 +56531,7 @@ xref: NCIT:C33150 xref: UMLS:C0224362 {source="ncithesaurus:Musculus_Latissimus_Dorsi"} xref: VHOG:0000930 is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010982 {source="EHDAA2"} ! latissimus dorsi pre-muscle mass relationship: has_muscle_antagonist UBERON:0001476 {source="dbpedia"} ! deltoid @@ -56480,6 +56556,7 @@ xref: Lobes xref: MA:0000360 xref: NCIT:C49579 xref: UMLS:C0447541 {source="ncithesaurus:Liver_Lobe"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009912 {source="FMA"} ! anatomical lobe relationship: part_of UBERON:0002107 ! liver @@ -56883,6 +56960,7 @@ xref: Subscapularis:muscle xref: UMLS:C0584884 {source="ncithesaurus:Subscapularis"} xref: VHOG:0000850 is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010891 ! pectoral complex muscle is_a: UBERON:0034908 ! scapular muscle relationship: develops_from UBERON:0010993 ! subscapularis pre-muscle mass @@ -56959,6 +57037,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/280734009 xref: MA:0001454 xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA xref: Vertebral:foramen +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0002240 ! spinal cord @@ -57492,6 +57571,7 @@ xref: FMA:14480 xref: http://en.wikipedia.org/wiki/Bare_area_of_the_liver xref: http://www.snomedbrowser.com/Codes/Details/279965008 xref: MA:0000359 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001114 ! right lobe of liver @@ -57537,8 +57617,8 @@ xref: MA:0000123 xref: NCIT:C12271 xref: UMLS:C0227590 {source="ncithesaurus:Tail_of_the_Pancreas"} xref: VHOG:0000452 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: develops_from UBERON:0009708 {source="EHDAA2"} ! dorsal pancreas relationship: part_of UBERON:0001264 {source="FMA"} ! pancreas @@ -57616,7 +57696,6 @@ xref: NCIT:C12381 xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA xref: UMLS:C0007531 {source="ncithesaurus:Cecum"} xref: VHOG:0001559 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009854 ! digestive tract diverticulum relationship: continuous_with UBERON:0001156 {source="Wikipedia"} ! ascending colon relationship: contributes_to_morphology_of UBERON:0000059 ! large intestine @@ -57730,7 +57809,6 @@ xref: MIAA:0000311 xref: NCIT:C12265 xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA xref: UMLS:C0227375 {source="ncithesaurus:Ascending_Colon"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -57757,7 +57835,6 @@ xref: NCIT:C12385 xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA xref: Transverse:colon xref: UMLS:C0227386 {source="ncithesaurus:Transverse_Colon"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001158 ! descending colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -57784,7 +57861,6 @@ xref: MIAA:0000313 xref: NCIT:C12268 xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA xref: UMLS:C0227389 {source="ncithesaurus:Descending_Colon"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001159 ! sigmoid colon relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut @@ -57817,7 +57893,6 @@ xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA xref: Sigmoid:colon xref: UMLS:C0227391 {source="ncithesaurus:Sigmoid_Colon"} xref: UMLS:C0682612 {source="ncithesaurus:Sigmoid_Flexure"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 {source="FMA"} ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001052 ! rectum relationship: develops_from UBERON:0001046 {source="Wikipedia"} ! hindgut @@ -57852,7 +57927,6 @@ xref: MESH:A03.492.766.419 xref: NCIT:C12257 xref: UMLS:C0017129 {source="ncithesaurus:Fundus_of_the_Stomach"} xref: VHOG:0000421 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009870 ! zone of stomach relationship: contributes_to_morphology_of UBERON:0000945 ! stomach relationship: has_part UBERON:0010038 ! fundic gastric gland @@ -57982,7 +58056,6 @@ xref: MESH:A03.492.766.716 xref: NCIT:C12259 xref: Pyloric:antrum xref: UMLS:C0034193 {source="ncithesaurus:Antrum_Pylori"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009870 {source="FMA"} ! zone of stomach relationship: continuous_with UBERON:0001161 ! body of stomach relationship: contributes_to_morphology_of UBERON:0001166 ! pylorus @@ -58017,7 +58090,6 @@ xref: MESH:A03.492.766.799 xref: NCIT:C12260 xref: UMLS:C0034196 {source="ncithesaurus:Pylorus"} xref: VHOG:0000420 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009870 ! zone of stomach intersection_of: UBERON:0009870 ! zone of stomach intersection_of: has_part UBERON:0001165 ! pyloric antrum @@ -58121,6 +58193,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0682620 xref: MA:0002498 xref: NCIT:C33341 xref: UMLS:C0682620 {source="ncithesaurus:Portal_Lobule"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 {source="FMA"} ! lobule relationship: contributes_to_morphology_of UBERON:0001280 ! liver parenchyma relationship: part_of UBERON:0001280 {source="MA", source="MP"} ! liver parenchyma @@ -58138,6 +58211,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/272214009 xref: MA:0002496 xref: NCIT:C32992 xref: UMLS:C0227519 {source="ncithesaurus:Liver_Acinus"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009842 {source="FMA"} ! glandular acinus is_a: UBERON:0011858 ! acinus of exocrine gland relationship: part_of UBERON:0001280 {source="cjm"} ! liver parenchyma @@ -59525,6 +59599,7 @@ xref: MESH:D007682 xref: NCIT:C12887 xref: Renal:pelvis xref: UMLS:C0227666 {source="ncithesaurus:Renal_Pelvis"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0004111 ! anatomical conduit disjoint_from: UBERON:0002355 ! pelvic region of trunk @@ -59558,6 +59633,7 @@ xref: MESH:D007672 xref: NCIT:C12739 xref: Renal:cortex xref: UMLS:C0022655 {source="ncithesaurus:Renal_Cortex"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002113 ! kidney @@ -59615,6 +59691,7 @@ xref: MESH:D007679 xref: NCIT:C33460 xref: Renal:papilla xref: UMLS:C0022666 {source="ncithesaurus:Renal_Papilla"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis @@ -59649,6 +59726,7 @@ xref: TAO:0005281 xref: UMLS:C0227635 {source="ncithesaurus:Renal_Corpuscle"} xref: VHOG:0001262 xref: ZFA:0005281 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney relationship: contributes_to_morphology_of UBERON:0001285 ! nephron @@ -59727,7 +59805,6 @@ xref: Renal:tubule xref: TAO:0001287 xref: UMLS:C0022674 {source="ncithesaurus:Renal_Tubule"} xref: ZFA:0001287 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004211 ! nephron epithelium is_a: UBERON:0009773 {source="GO"} ! renal tubule intersection_of: UBERON:0003914 {source="GO", source="MA", source="ZFA"} ! epithelial tube @@ -59767,6 +59844,7 @@ xref: MA:0000371 xref: MESH:D007685 xref: TAO:0005294 xref: ZFA:0005294 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006555 ! excretory tube relationship: contributes_to_morphology_of UBERON:0002113 ! kidney relationship: part_of UBERON:0001285 {notes="checkme", source="GO"} ! nephron @@ -59844,6 +59922,7 @@ xref: VHOG:0001481 xref: XAO:0000165 is_a: UBERON:0001851 ! cortex is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: capable_of GO:0006704 ! glucocorticoid biosynthetic process @@ -59888,6 +59967,7 @@ xref: UMLS:C0001629 {source="ncithesaurus:Adrenal_Medulla"} xref: VHOG:0001378 xref: XAO:0000166 is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002369 ! adrenal gland @@ -60211,6 +60291,7 @@ xref: NCIT:C32582 xref: UMLS:C0230240 {source="ncithesaurus:Falciform_Ligament"} xref: VHOG:0000355 is_a: CARO:0000003 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0013139 ! ligament of liver intersection_of: UBERON:0008845 ! nonskeletal ligament intersection_of: attaches_to UBERON:0000309 ! body wall @@ -60240,6 +60321,7 @@ xref: MA:0002670 xref: NCIT:C33601 xref: Splenic:hilum xref: UMLS:C0229685 {source="ncithesaurus:Splenic_Hilum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002106 ! spleen @@ -60268,6 +60350,7 @@ xref: MA:0002672 xref: NCIT:C33602 xref: UMLS:C1519475 {source="ncithesaurus:Splenic_Lymphoid_Follicle"} is_a: UBERON:0000444 ! lymphoid follicle +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000444 ! lymphoid follicle intersection_of: part_of UBERON:0002106 ! spleen relationship: contains_process GO:0002319 ! memory B cell differentiation @@ -60299,7 +60382,6 @@ xref: MA:0000756 xref: NCIT:C12992 xref: Red:pulp xref: UMLS:C0229687 {source="ncithesaurus:Splenic_Red_Pulp"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1000023 ! spleen pulp relationship: composed_primarily_of CL:0000542 ! lymphocyte relationship: contributes_to_morphology_of UBERON:0002106 ! spleen @@ -60322,6 +60404,7 @@ xref: Marginal:zone xref: NCIT:C49767 xref: UMLS:C1711368 {source="ncithesaurus:Marginal_Zone"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure disjoint_from: UBERON:0004879 ! marginal zone of embryo relationship: adjacent_to UBERON:0001250 ! red pulp of spleen relationship: adjacent_to UBERON:0001959 ! white pulp of spleen @@ -60341,6 +60424,7 @@ xref: FMA:15892 xref: http://www.snomedbrowser.com/Codes/Details/392273001 xref: http://www.snomedbrowser.com/Codes/Details/47879001 xref: MA:0002652 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0000056 ! ureter @@ -60361,6 +60445,7 @@ xref: FMA:15896 xref: http://www.snomedbrowser.com/Codes/Details/2771005 xref: MA:0002653 is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0000056 ! ureter @@ -60380,7 +60465,9 @@ synonym: "ureter urothelium" EXACT [] xref: EMAPA:28089 xref: FMA:15897 xref: MA:0002655 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! urothelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0000056 ! ureter relationship: contributes_to_morphology_of UBERON:0000056 ! ureter @@ -60450,6 +60537,7 @@ xref: MA:0002493 xref: NCIT:C48941 xref: UMLS:C0458421 {source="ncithesaurus:Bladder_Wall"} is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder @@ -60480,6 +60568,7 @@ xref: MA:0002492 xref: NCIT:C12331 xref: UMLS:C0447586 {source="ncithesaurus:Bladder_Trigone"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0006082 ! fundus of urinary bladder @@ -60506,6 +60595,7 @@ xref: MA:0002491 xref: NCIT:C12336 xref: UMLS:C0227716 {source="ncithesaurus:Bladder_Neck"} is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder @@ -60538,6 +60628,7 @@ xref: MA:0001692 xref: NCIT:C32205 xref: UMLS:C0227691 {source="ncithesaurus:Bladder_Mucosa"} is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder @@ -60592,6 +60683,7 @@ xref: MA:0001695 xref: NCIT:C48940 xref: UMLS:C1706967 {source="ncithesaurus:Bladder_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder @@ -60640,7 +60732,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/247604006 xref: MA:0002417 xref: NCIT:C49268 xref: UMLS:C0227578 {source="ncithesaurus:Pancreatic_Acinus"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013232 ! serous acinus intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0000017 ! exocrine pancreas @@ -60711,6 +60803,7 @@ xref: MA:0000758 xref: NCIT:C33607 xref: UMLS:C0229688 {source="ncithesaurus:Splenic_Trabecula"} is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen @@ -60730,6 +60823,7 @@ xref: MA:0002671 xref: NCIT:C33599 xref: UMLS:C0735011 {source="ncithesaurus:Splenic_Cord"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001250 {source="MA"} ! red pulp of spleen [Term] @@ -60800,6 +60894,7 @@ xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA xref: RETIRED_EHDAA2:0001427 xref: UMLS:C0000962 {source="ncithesaurus:Acetabulum"} xref: VHOG:0000974 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 {source="Phenoscape"} ! ilium relationship: part_of UBERON:0001486 {source="FMA"} ! hip joint @@ -60834,7 +60929,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/360010001 xref: NCIT:C33291 xref: UMLS:C0684083 {source="ncithesaurus:Pelvic_Girdle"} xref: VSAO:0000304 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007823 ! appendage girdle region is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0007823 ! appendage girdle region @@ -61091,7 +61185,7 @@ xref: MA:0002499 xref: NCIT:C33342 xref: Portal:triad xref: UMLS:C0227514 {source="ncithesaurus:Portal_Triad"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: contributes_to_morphology_of UBERON:0001171 ! portal lobule relationship: has_part UBERON:0001193 ! hepatic artery @@ -61157,6 +61251,7 @@ xref: UMLS:C0227523 {source="ncithesaurus:Hepatic_Sinusoid"} xref: VHOG:0000708 xref: ZFA:0005091 is_a: UBERON:0003909 ! sinusoid +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0015796 ! liver blood vessel intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0002107 ! liver @@ -61219,6 +61314,7 @@ xref: NCIT:C32202 xref: TAO:0005163 xref: UMLS:C0005393 {source="ncithesaurus:Bile_Canaliculus"} xref: ZFA:0005163 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="FMA", source="ZFA"} ! anatomical space relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0001172 {source="FMA"} ! hepatic acinus @@ -61247,6 +61343,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0736346 xref: MA:0001651 xref: NCIT:C32387 xref: Renal:column +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:8410073 ! medullary region of kidney @@ -61324,6 +61421,7 @@ xref: TAO:0005312 xref: UMLS:C0227643 {source="ncithesaurus:Urinary_Space"} xref: ZFA:0005283 xref: ZFA:0005312 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: contributes_to_morphology_of UBERON:0001230 ! glomerular capsule relationship: part_of UBERON:0001230 ! glomerular capsule @@ -61523,6 +61621,7 @@ xref: CALOHA:TS-0508 xref: EMAPA:28310 xref: FMA:17733 xref: MA:0001653 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla relationship: part_of UBERON:0000362 ! renal medulla @@ -61546,6 +61645,7 @@ xref: CALOHA:TS-0506 xref: EMAPA:28349 xref: FMA:17734 xref: MA:0001652 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla relationship: only_in_taxon NCBITaxon:40674 {source="GO:0072053"} ! Mammalia @@ -61581,6 +61681,7 @@ xref: MIAA:0000319 xref: NCIT:C12313 xref: UMLS:C0014180 {source="ncithesaurus:Endometrium"} xref: VHOG:0001285 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000995 ! uterus @@ -61729,6 +61830,7 @@ xref: MESH:D012611 xref: NCIT:C12785 xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA xref: UMLS:C0036471 {source="ncithesaurus:Scrotum"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0011756 {source="Wikipedia"} ! male genital swelling @@ -61889,6 +61991,7 @@ xref: EMAPA:35267 xref: FMA:18659 xref: http://www.snomedbrowser.com/Codes/Details/258586009 xref: MA:0002414 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034922 ! cell cluster relationship: part_of UBERON:0001305 ! ovarian follicle @@ -61908,6 +62011,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/258491008 xref: MA:0001706 xref: NCIT:C49265 xref: UMLS:C0227877 {source="ncithesaurus:Ovarian_Capsule"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003893 ! capsule @@ -62378,6 +62482,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279692004 xref: MA:0001738 xref: NCIT:C52726 xref: UMLS:C0227970 {source="ncithesaurus:Prostate_Gland_Lobe"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe @@ -62444,6 +62549,7 @@ xref: FMA:19638 xref: http://www.snomedbrowser.com/Codes/Details/35900000 xref: MA:0002727 is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000989 ! penis @@ -62549,6 +62655,7 @@ xref: MA:0002646 xref: NCIT:C13101 xref: Prostatic:urethra xref: UMLS:C0458450 {source="ncithesaurus:Prostatic_Portion_of_the_Male_Urethra"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra relationship: located_in UBERON:0002367 {source="FMA"} ! prostate gland @@ -62566,6 +62673,7 @@ synonym: "pars intermedia urethrae" EXACT LATIN [FMA:19674, FMA:TA] synonym: "pars membranacea (urethrae)" EXACT [] xref: EMAPA:37542 {source="MA:th"} xref: MA:0002647 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000057 ! urethra @@ -62590,6 +62698,7 @@ xref: FMA:19675 xref: http://www.snomedbrowser.com/Codes/Details/263341006 xref: MA:0002644 xref: Penile:urethra +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001333 ! male urethra @@ -62613,6 +62722,7 @@ xref: FMA:19683 xref: http://www.snomedbrowser.com/Codes/Details/279477005 xref: MA:0001688 is_a: UBERON:0000414 {source="MP"} ! mucous gland +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000057 ! urethra relationship: contributes_to_morphology_of UBERON:0000057 ! urethra @@ -62815,6 +62925,7 @@ xref: MESH:D006924 xref: NCIT:C32750 xref: UMLS:C0020412 {source="ncithesaurus:Hymen"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000996 {source="FMA"} ! vagina @@ -62946,6 +63057,7 @@ xref: Lacrimal:sac xref: MA:0001298 xref: NCIT:C32909 xref: UMLS:C0229289 {source="ncithesaurus:Lacrimal_Sac"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002392 ! nasolacrimal duct @@ -63007,7 +63119,6 @@ xref: NCIT:C32069 xref: UMLS:C0230120 {source="ncithesaurus:Anal_Region"} xref: VHOG:0000395 xref: WBbt:0006919 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000475 ! organism subdivision relationship: has_developmental_contribution_from UBERON:0000931 {evidence="cjm"} ! proctodeum @@ -63099,6 +63210,7 @@ xref: MA:0001979 xref: NCIT:C52938 xref: UMLS:C0226393 {source="ncithesaurus:Inferior_Rectal_Artery"} is_a: UBERON:0003835 ! abdominal segment blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015212 ! lateral structure is_a: UBERON:0035039 ! rectal artery relationship: connected_to UBERON:0007315 {subset="human_reference_atlas"} ! internal pudendal artery @@ -63777,6 +63889,7 @@ xref: NCIT:C97339 xref: NLX:143555 xref: UMLS:C0026607 {source="ncithesaurus:Primary_Motor_Cortex"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex relationship: contributes_to_morphology_of UBERON:0001870 ! frontal cortex relationship: part_of UBERON:0000956 ! cerebral cortex @@ -64036,6 +64149,7 @@ xref: MESH:A08.186.211.730.885.213.863.297 xref: NCIT:C52712 xref: UMLS:C0004302 {source="ncithesaurus:Auditory_Cortex"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007605 {source="Wikipedia"} ! sensory perception of sound relationship: contributes_to_morphology_of UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0000956 ! cerebral cortex @@ -65750,7 +65864,6 @@ xref: MESH:D005145 xref: NCIT:C13071 xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA xref: UMLS:C0015450 {source="ncithesaurus:Face"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001444 ! subdivision of head relationship: contributes_to_morphology_of UBERON:0000033 ! head relationship: has_part UBERON:0000018 {gci_filler="NCBITaxon:50557", gci_relation="part_of"} ! compound eye @@ -66062,7 +66175,6 @@ xref: NCIT:C25203 xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA xref: UMLS:C0037004 {source="ncithesaurus:Shoulder"} xref: VHOG:0000342 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000475 ! organism subdivision relationship: has_part UBERON:0016884 ! shoulder joint relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda @@ -66319,6 +66431,7 @@ xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA xref: UMLS:C0224234 {source="ncithesaurus:Deltoid"} xref: VHOG:0000846 is_a: UBERON:0001482 {source="FMA"} ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034908 ! scapular muscle intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: attaches_to UBERON:0000976 ! humerus @@ -66386,6 +66499,7 @@ xref: NCIT:C33750 xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA xref: UMLS:C0224232 {source="ncithesaurus:Teres_Major_Muscle"} xref: VHOG:0000750 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010467 ! teres muscle relationship: develops_from UBERON:0010988 {source="EHDAA2"} ! teres major pre-muscle mass relationship: has_muscle_insertion UBERON:0000976 {notes="medial lip of the intertubercular sulcus of the humerus", source="dbpedia"} ! humerus @@ -66543,7 +66657,6 @@ xref: NCIT:C32898 xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA xref: UMLS:C0022745 {source="ncithesaurus:Knee_Joint"} xref: VHOG:0001003 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003840 ! hindlimb joint is_a: UBERON:0011139 ! synovial limb joint intersection_of: UBERON:0000982 ! skeletal joint @@ -66698,7 +66811,6 @@ xref: MESH:D004551 xref: NCIT:C32497 xref: UMLS:C0013770 {source="ncithesaurus:Elbow_Joint"} xref: VHOG:0000997 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 {source="FMA"} ! synovial joint is_a: UBERON:0003839 ! forelimb joint is_a: UBERON:0011139 ! synovial limb joint @@ -66848,6 +66960,7 @@ xref: MESH:D010369 xref: NCIT:C33286 xref: UMLS:C0030747 {source="ncithesaurus:Pectoralis_Muscle"} is_a: UBERON:0003830 ! thoracic segment muscle +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008196 {source="FMA"} ! muscle of pectoral girdle relationship: develops_from UBERON:0010984 ! pectoral pre-muscle mass relationship: part_of UBERON:0004464 {source="BTO"} ! musculature of thorax @@ -67150,7 +67263,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/181300001 xref: MA:0000475 xref: VHOG:0001196 is_a: UBERON:0001515 ! thoracic aorta -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connected_to UBERON:0001496 {subset="human_reference_atlas"} ! ascending aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta @@ -67292,7 +67404,6 @@ xref: MA:0002571 xref: NCIT:C32455 xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA xref: UMLS:C0011666 {source="ncithesaurus:Descending_Aorta"} -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005800 {source="FMA"} ! section of aorta relationship: connected_to UBERON:0001508 {subset="human_reference_atlas"} ! arch of aorta relationship: develops_from UBERON:0005805 {source="Wikipedia"} ! dorsal aorta @@ -68305,8 +68416,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/361381009 xref: MA:0000442 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ xref: VHOG:0000406 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0000004 ! nose [Term] @@ -68324,7 +68435,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/281488008 xref: MA:0000435 xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g xref: VHOG:0000382 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: has_part UBERON:0000170 ! pair of lungs @@ -68546,6 +68656,7 @@ xref: NCIT:C32934 xref: UMLS:C0023054 {source="ncithesaurus:Laryngeal_Muscle"} is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0014892 ! skeletal muscle organ intersection_of: part_of UBERON:0001737 ! larynx relationship: contributes_to_morphology_of UBERON:0001015 ! musculature @@ -69429,6 +69540,7 @@ xref: MA:0001271 xref: TAO:0000511 xref: VHOG:0000549 xref: ZFA:0000511 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004277 ! eye muscle is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010959 ! craniocervical muscle @@ -69670,6 +69782,7 @@ xref: Thyroid:isthmus xref: UMLS:C0229583 {source="ncithesaurus:Thyroid_Gland_Isthmus"} xref: VHOG:0000739 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure disjoint_from: UBERON:0003052 ! midbrain-hindbrain boundary relationship: connects UBERON:0001118 ! lobe of thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -69719,6 +69832,7 @@ xref: Sublingual:artery xref: UMLS:C0226106 {source="ncithesaurus:Sublingual_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001832 ! sublingual gland relationship: branching_part_of UBERON:0001610 {source="FMA"} ! lingual artery @@ -69880,6 +69994,7 @@ xref: NCIT:C52973 xref: UMLS:C0226144 {source="ncithesaurus:Mental_Artery"} is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0014693 ! inferior alveolar artery intersection_of: supplies UBERON:0008199 ! chin @@ -69903,6 +70018,7 @@ xref: MA:0001924 xref: NCIT:C52847 xref: UMLS:C0226151 {source="ncithesaurus:Buccal_Artery"} is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001616 ! maxillary artery intersection_of: supplies UBERON:0001567 ! cheek @@ -69936,6 +70052,7 @@ xref: UMLS:C0029078 {source="ncithesaurus:Opthalmic_Artery"} xref: XAO:0000368 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -70016,6 +70133,7 @@ xref: NCIT:C52948 xref: UMLS:C0226171 {source="ncithesaurus:Lacrimal_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001817 ! lacrimal gland relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery @@ -70061,6 +70179,7 @@ xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA xref: UMLS:C0149561 {source="ncithesaurus:Anterior_Cerebral_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0001636 {source="lexical"} ! posterior cerebral artery relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -70130,6 +70249,7 @@ xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA xref: UMLS:C0149566 {source="ncithesaurus:Middle_Cerebral_Artery"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004449 ! cerebral artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001532 {source="FMA", source="WP"} ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -70161,6 +70281,7 @@ xref: ZFA:0005001 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0006347 ! communicating artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0006347 ! communicating artery intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery @@ -70191,6 +70312,7 @@ xref: MA:0002463 xref: MESH:A08.800.550.700.120.600.150 xref: NCIT:C66852 xref: UMLS:C0007277 {source="ncithesaurus:Carotid_Body"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: capable_of GO:0009593 ! detection of chemical stimulus relationship: capable_of_part_of GO:0003039 ! detection of reduced oxygen by carotid body chemoreceptor signaling @@ -71324,6 +71446,7 @@ xref: UMLS:C0007797 {source="ncithesaurus:Cerebral_Vein"} xref: XAO:0004160 is_a: UBERON:0001638 ! vein is_a: UBERON:0003499 ! brain blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0001893 ! telencephalon relationship: drains UBERON:0001893 ! telencephalon @@ -71526,6 +71649,7 @@ xref: NCIT:C53063 xref: UMLS:C0035327 {source="ncithesaurus:Retinal_Vein"} is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0006011 ! hyaloid vein relationship: develops_from_part_of UBERON:0006011 {notes="proximal portion", source="ISBN:0781772214"} ! hyaloid vein relationship: drains UBERON:0000966 ! retina @@ -71601,8 +71725,7 @@ xref: XAO:0000428 xref: ZFA:0000295 is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion -is_a: UBERON:0004121 ! ectoderm-derived structure -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0001645 ! trigeminal nerve property_value: dc-contributor https://github.com/ANiknejad @@ -71703,6 +71826,7 @@ xref: Temporal:bone xref: UMLS:C0039484 {source="ncithesaurus:Temporal_Bone"} xref: VHOG:0000800 is_a: UBERON:0008193 {source="FMA"} ! pneumatized bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest [Term] id: UBERON:0001679 @@ -72025,6 +72149,7 @@ xref: UMLS:C0038152 {source="ncithesaurus:Stapes"} xref: VHOG:0000688 is_a: UBERON:0001686 ! auditory ossicle bone is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015016 ! stapes endochondral element intersection_of: UBERON:0015016 ! stapes endochondral element @@ -72343,6 +72468,7 @@ xref: TAO:0001410 xref: UMLS:C0029180 {source="ncithesaurus:Orbit"} xref: XAO:0003171 xref: ZFA:0001410 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0011156 {source="FMA-abduced-lr"} ! facial skeleton @@ -72398,7 +72524,6 @@ xref: Intermediate:nerve xref: MBA:1131 xref: TAO:0000679 xref: ZFA:0000679 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004674 ! facial nerve root relationship: develops_from UBERON:0003099 {source="Wikipedia"} ! cranial neural crest relationship: part_of UBERON:0001896 ! medulla oblongata @@ -72608,8 +72733,8 @@ xref: NCIT:C33160 xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA xref: UMLS:C0027432 {source="ncithesaurus:Nasal_Septum"} xref: VHOG:0000017 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003037 ! septum +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0000004 ! nose relationship: develops_from UBERON:0009714 {source="EHDAA2-abduced"} ! intermaxillary process relationship: part_of UBERON:0000004 ! nose @@ -72729,6 +72854,7 @@ xref: Upper:jaw xref: VHOG:0000454 is_a: CARO:0000003 is_a: UBERON:0000475 ! organism subdivision +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000475 ! organism subdivision intersection_of: has_skeleton UBERON:0003277 ! skeleton of upper jaw disjoint_from: UBERON:0001710 ! lower jaw region @@ -72795,6 +72921,7 @@ xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA xref: UMLS:C0015426 {source="ncithesaurus:Eyelid"} xref: VHOG:0000016 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: capable_of GO:0060082 ! eye blink reflex relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye relationship: fma_set_term FMA:75178 @@ -72967,8 +73094,8 @@ xref: NCIT:C34292 xref: Secondary:palate xref: UMLS:C0700374 {source="ncithesaurus:Palate"} xref: UMLS:C1519217 {source="ncithesaurus:Secondary_Palate"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007375 ! roof of mouth +is_a: UBERON:0010313 ! neural crest-derived structure relationship: adjacent_to UBERON:0000167 ! oral cavity relationship: adjacent_to UBERON:0001707 ! nasal cavity relationship: develops_from UBERON:0005619 {notes="fusion", source="http://www.indiana.edu/~anat550/hnanim/face/face.html"} ! secondary palatal shelf @@ -73093,11 +73220,8 @@ xref: Nucleus:ambiguus xref: UMLS:C0152400 {source="BIRNLEX:2650"} xref: UMLS:C0152400 {source="ncithesaurus:Nucleus_Ambiguus"} xref: UMLS:C1281211 {source="BIRNLEX:2650"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011775 {source="Wikipedia"} ! vagus nerve nucleus -relationship: develops_from UBERON:0001016 ! nervous system -relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010126 ! future nucleus ambiguus relationship: immediate_transformation_of UBERON:0010126 {evidence="definitional"} ! future nucleus ambiguus relationship: part_of UBERON:0001896 {source="MA"} ! medulla oblongata @@ -73271,6 +73395,7 @@ xref: NCIT:C12278 xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA xref: Sphenoidal:sinus xref: UMLS:C0037885 {source="ncithesaurus:Sphenoid_Sinus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001825 ! paranasal sinus intersection_of: UBERON:0001825 ! paranasal sinus intersection_of: part_of UBERON:0009639 ! body of sphenoid @@ -73308,6 +73433,7 @@ xref: NCIT:C33258 xref: UMLS:C0226964 {source="ncithesaurus:Papilla_of_the_Tongue"} xref: UMLS:C0226964 {source="BIRNLEX:4102"} xref: UMLS:C1289183 {source="BIRNLEX:4102"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0005020 ! mucosa of tongue relationship: part_of UBERON:0009471 {source="FMA-modified"} ! dorsum of tongue @@ -73421,7 +73547,7 @@ xref: UMLS:C0521367 {source="ncithesaurus:Oropharynx"} xref: VHOG:0000457 xref: VSAO:0000034 xref: XAO:0004048 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001042 ! chordate pharynx relationship: develops_from UBERON:0010023 {source="ISBN:0073040584-table13.1"} ! dorsal part of pharyngeal pouch 2 @@ -73514,6 +73640,7 @@ xref: MIAA:0000039 xref: NCIT:C12231 xref: Soft:palate xref: UMLS:C0030219 {source="ncithesaurus:Soft_Palate"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: part_of UBERON:0000165 {source="FMA"} ! mouth relationship: part_of UBERON:0001716 {source="MA"} ! secondary palate @@ -73542,6 +73669,7 @@ xref: NCIT:C12232 xref: Palatine:uvula xref: UMLS:C0042173 {source="ncithesaurus:Uvula"} is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:0004078 ! cerebellum vermis lobule IX relationship: capable_of_part_of GO:0071625 ! vocalization behavior relationship: only_in_taxon NCBITaxon:9443 {source="http://www.ncbi.nlm.nih.gov/pubmed/1408233"} ! Primates @@ -73638,7 +73766,6 @@ xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA xref: UMLS:C0023078 {source="ncithesaurus:Larynx"} xref: VHOG:0001279 xref: XAO:0003081 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000072 ! proximo-distal subdivision of respiratory tract relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system @@ -73696,6 +73823,7 @@ xref: NCIT:C12281 xref: UMLS:C0023050 {source="ncithesaurus:Laryngeal_Cartilage"} xref: VHOG:0001550 is_a: UBERON:0003406 ! cartilage of respiratory system +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007844 {source="FMA"} ! cartilage element is_a: UBERON:0011004 ! pharyngeal arch cartilage intersection_of: UBERON:0007844 ! cartilage element @@ -73789,6 +73917,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279508004 xref: MA:0001755 xref: NCIT:C32933 xref: UMLS:C0458519 {source="ncithesaurus:Laryngeal_Ligament"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0008845 {source="FMA"} ! nonskeletal ligament intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001737 ! larynx @@ -73854,6 +73983,7 @@ xref: MA:0002675 xref: NCIT:C33781 xref: UMLS:C0229575 {source="ncithesaurus:Thyroid_Gland_Capsule"} is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -73875,8 +74005,8 @@ xref: EMAPA:37769 {source="MA:th"} xref: FMA:55515 xref: http://www.snomedbrowser.com/Codes/Details/371402001 xref: MA:0000730 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: has_part CL:0000570 {source="FMA"} ! parafollicular cell @@ -73940,8 +74070,8 @@ xref: MA:0000274 xref: MESH:D007765 xref: NCIT:C32905 xref: UMLS:C0022903 {source="ncithesaurus:Lacrimal_Apparatus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0000019 ! camera-type eye relationship: develops_from UBERON:0000076 {source="ISBN:0781772214"} ! external ectoderm relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda @@ -74082,7 +74212,9 @@ synonym: "stylohyal" BROAD [FMA:56472] synonym: "stylohyal bone" RELATED [MFMO:0000053] xref: FMA:56472 xref: MFMO:0000053 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003960 ! styloid process of temporal bone [Term] @@ -74148,7 +74280,6 @@ xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA xref: Pinna:(anatomy) xref: UMLS:C0928075 {source="ncithesaurus:Auricle"} xref: VHOG:0000460 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001444 ! subdivision of head relationship: continuous_with UBERON:0001352 ! external acoustic meatus relationship: develops_from UBERON:0006208 ! auditory hillocks @@ -74371,6 +74502,7 @@ xref: MESH:D008443 xref: NCIT:C12275 xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA xref: UMLS:C0024957 {source="ncithesaurus:Maxillary_Sinus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001825 ! paranasal sinus relationship: in_lateral_side_of UBERON:0000033 ! head relationship: part_of UBERON:0002397 ! maxilla @@ -74553,6 +74685,7 @@ xref: MA:0001294 xref: NCIT:C32907 xref: UMLS:C0459631 {source="ncithesaurus:Lacrimal_Canaliculus"} is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connects UBERON:0001351 ! lacrimal sac relationship: connects UBERON:0010284 ! lacrimal punctum relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system @@ -74580,6 +74713,7 @@ xref: UMLS:C0034121 {source="ncithesaurus:Pupil"} xref: VHOG:0000116 xref: XAO:0000283 xref: ZFA:0001283 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="AAO", source="FMA"} ! anatomical space relationship: contributes_to_morphology_of UBERON:0001769 ! iris relationship: part_of UBERON:0001769 ! iris @@ -74625,6 +74759,7 @@ xref: UMLS:C0459875 {source="ncithesaurus:Corneal_Epithelium"} xref: ZFA:0001683 is_a: UBERON:0000488 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! atypical epithelium is_a: UBERON:0010304 {gci_relation="part_of", gci_filler="NCBITaxon:7955"} ! non-keratinized stratified squamous epithelium +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015808 ! eye epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: bounding_layer_of UBERON:0000964 ! cornea @@ -74850,6 +74985,7 @@ xref: Iris:stroma xref: MA:0002777 xref: ZFA:0005569 is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0001769 ! iris relationship: contributes_to_morphology_of UBERON:0001769 ! iris @@ -74970,9 +75106,7 @@ intersection_of: immediate_transformation_of UBERON:0005424 ! presumptive retina relationship: adjacent_to UBERON:0001787 {source="Wikipedia"} ! photoreceptor layer of retina relationship: adjacent_to UBERON:0003902 ! retinal neural layer relationship: develops_from NCBITaxon:6072 ! Eumetazoa -relationship: develops_from UBERON:0003072 ! optic cup relationship: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium -relationship: develops_from UBERON:0010312 ! immature eye relationship: has_part GO:0048770 ! pigment granule relationship: immediate_transformation_of UBERON:0005424 ! presumptive retinal pigmented epithelium @@ -75005,6 +75139,7 @@ xref: Optic:disc xref: UMLS:C0029127 {source="ncithesaurus:Optic_Disc"} xref: VHOG:0000551 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: extends_fibers_into UBERON:0000941 ! cranial nerve II relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0000966 ! retina @@ -75054,7 +75189,6 @@ xref: VHOG:0000279 xref: XAO:0000429 xref: XAO:0003089 xref: ZFA:0000641 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0034713 ! cranial neuron projection bundle intersection_of: UBERON:0001021 ! nerve @@ -75093,8 +75227,8 @@ xref: UMLS:C0016622 {source="BIRNLEX:2543"} xref: UMLS:C0016622 {source="ncithesaurus:Fovea_Centralis"} xref: UMLS:C0450290 {source="BIRNLEX:2543"} xref: VHOG:0001572 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CHEBI:27547 ! zeaxanthin relationship: has_part CHEBI:28838 ! lutein relationship: has_part CL:0000573 ! retinal cone cell @@ -75308,7 +75442,6 @@ xref: TAO:0000024 xref: VHOG:0001166 xref: XAO:0003223 xref: ZFA:0000024 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001781 {source="FMA"} ! layer of retina relationship: adjacent_to UBERON:0001793 ! nerve fiber layer of retina relationship: composed_primarily_of CL:0000740 ! retinal ganglion cell @@ -75376,7 +75509,6 @@ xref: TAO:0001029 xref: UMLS:C1512783 {source="ncithesaurus:Inner_Limiting_Membrane"} xref: XAO:0003222 xref: ZFA:0001029 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007619 {source="MA"} ! limiting membrane of retina relationship: adjacent_to UBERON:0001797 ! vitreous humor relationship: contributes_to_morphology_of UBERON:0000966 ! retina @@ -75737,6 +75869,7 @@ xref: NCIT:C12467 xref: Sympathetic:ganglion xref: UMLS:C0017071 {source="ncithesaurus:Sympathetic_Ganglion"} is_a: UBERON:0001805 ! autonomic ganglion +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000013 ! sympathetic nervous system relationship: contributes_to_morphology_of UBERON:0000013 ! sympathetic nervous system @@ -75781,8 +75914,8 @@ name: parasympathetic ganglion def: "Ganglion containing neurons that receive innervation from parasympathetic neurons in the central nervous system and subserves parasympathetic functions through innervation of smooth muscle, cardiac muscle and glands." [NLXANAT:100303] subset: pheno_slim subset: uberon_slim -synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion] synonym: "ganglion parasympathicum" RELATED [BTO:0001256] +synonym: "ganglion parasympathicum" RELATED LATIN [http://en.wikipedia.org/wiki/Parasympathetic_ganglion] xref: BTO:0001256 xref: EHDAA2:0001400 xref: EMAPA:32813 @@ -75839,6 +75972,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/122455009 xref: MA:0002407 xref: NCIT:C12929 xref: UMLS:C0501403 {source="ncithesaurus:Nerve_Plexus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: has_part CL:0000526 {source="AEO"} ! afferent neuron relationship: has_part CL:0000527 {source="AEO"} ! efferent neuron @@ -75871,8 +76005,8 @@ xref: MESH:A09.371.192 xref: NCIT:C12341 xref: UMLS:C0009758 {source="ncithesaurus:Conjunctiva"} xref: XAO:0000182 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001711 ! eyelid relationship: adjacent_to UBERON:0001773 ! sclera relationship: contributes_to_morphology_of UBERON:0001801 ! anterior segment of eyeball @@ -75930,8 +76064,8 @@ name: brachial nerve plexus def: "An arrangement of nerve fibers, running from the spine where it proceeds through the neck then the axilla and into the arm where it innervates skin and muscle. [WP,modified]." [http://en.wikipedia.org/wiki/Brachial_plexus, UBERON:cjm] subset: uberon_slim synonym: "brachial plexus" EXACT [MA:0001180] -synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus] synonym: "plexus brachialis" RELATED LATIN [http://en.wikipedia.org/wiki/Brachial_plexus] +synonym: "plexus brachialis" RELATED [http://en.wikipedia.org/wiki/Brachial_plexus] xref: Brachial:plexus xref: EHDAA2:0000180 xref: EHDAA:3782 @@ -76057,6 +76191,7 @@ xref: Meibomian:gland xref: MESH:D008537 xref: NCIT:C33075 xref: UMLS:C0025181 {source="ncithesaurus:Meibomian_Gland"} +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013231 ! sebaceous gland of eyelid is_a: UBERON:0015251 {source="ISBN:0123813611", source="MA"} ! modified sebaceous gland intersection_of: UBERON:0001821 ! sebaceous gland @@ -76076,6 +76211,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/280576003 xref: MA:0001266 xref: Palpebral:fissure is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001712 ! upper eyelid relationship: adjacent_to UBERON:0001713 ! lower eyelid relationship: part_of UBERON:0000019 ! camera-type eye @@ -76106,7 +76242,6 @@ xref: Sweat:gland xref: UMLS:C0038989 {source="ncithesaurus:Sweat_Gland"} xref: VHOG:0001467 is_a: UBERON:0002365 {source="MA"} ! exocrine gland -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0019319 ! exocrine gland of integumental system intersection_of: UBERON:0002530 ! gland @@ -76141,7 +76276,6 @@ xref: NCIT:C33519 xref: Sebaceous:gland xref: UMLS:C0036505 {source="ncithesaurus:Sebaceous_Gland"} xref: VHOG:0001468 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007771 ! epidermis gland is_a: UBERON:0012344 {source="Wikipedia"} ! holocrine gland is_a: UBERON:0019319 ! exocrine gland of integumental system @@ -76166,6 +76300,7 @@ xref: MA:0001259 xref: Orbital:septum is_a: UBERON:0000094 ! membrane organ is_a: UBERON:0003037 ! septum +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002204 ! musculoskeletal system relationship: part_of UBERON:0004772 ! eyelid tarsus relationship: surrounds UBERON:0001697 ! orbit of skull @@ -76188,6 +76323,7 @@ xref: NCIT:C49593 xref: UMLS:C0225415 {source="ncithesaurus:Nasal_Cartilage"} is_a: UBERON:0002418 {source="MA"} ! cartilage tissue is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007844 ! cartilage element intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0000004 ! nose @@ -76218,6 +76354,7 @@ xref: MESH:D007820 xref: NCIT:C49246 xref: UMLS:C0023053 {source="ncithesaurus:Laryngeal_Mucosa"} is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -76268,6 +76405,8 @@ xref: GAID:302 xref: http://en.wikipedia.org/wiki/Mucous_membrane_of_nose xref: http://www.snomedbrowser.com/Codes/Details/310211009 is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0015788 ! olfactory apparatus chamber relationship: bounding_layer_of UBERON:0015788 ! olfactory apparatus chamber @@ -76405,7 +76544,6 @@ xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA xref: Parotid:gland xref: UMLS:C0030580 {source="ncithesaurus:Parotid_Gland"} xref: VHOG:0000308 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000409 ! serous gland is_a: UBERON:0001829 ! major salivary gland is_a: UBERON:0012102 ! buccal salivary gland @@ -76441,7 +76579,6 @@ xref: NCIT:C12234 xref: Sublingual:gland xref: UMLS:C0038553 {source="ncithesaurus:Sublingual_Salivary_Gland"} xref: VHOG:0000363 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001829 {source="FMA"} ! major salivary gland disjoint_from: UBERON:0009964 ! crustacean maxillary gland relationship: develops_from UBERON:0006297 ! sublingual gland primordium @@ -76473,6 +76610,7 @@ xref: TAO:0007006 xref: UMLS:C0023759 {source="ncithesaurus:Lip"} xref: VHOG:0000677 xref: ZFA:0007006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003102 {source="ZFA"} ! surface structure disjoint_from: UBERON:0004084 ! genital labium relationship: contributes_to_morphology_of UBERON:0000165 ! mouth @@ -76593,6 +76731,7 @@ xref: MA:0001586 xref: MESH:D018987 xref: NCIT:C32486 xref: Salivary:duct +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube is_a: UBERON:0003928 ! digestive system duct intersection_of: UBERON:0000058 ! duct @@ -76646,6 +76785,7 @@ xref: NCIT:C33227 xref: UMLS:C0458699 {source="ncithesaurus:Osseous_Labyrinth"} xref: VHOG:0001219 xref: XAO:0000193 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001694 {source="FMA", source="MA"} ! petrous part of temporal bone relationship: part_of UBERON:0001846 {source="FMA"} ! internal ear @@ -76681,8 +76821,8 @@ xref: UMLS:C0036622 {source="ncithesaurus:Semicircular_Canal"} xref: VHOG:0001144 xref: XAO:0000198 xref: ZFA:0000431 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 {source="GO"} ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003051 ! ear vesicle relationship: part_of UBERON:0001846 {source="MA"} ! internal ear relationship: part_of UBERON:0001849 {source="OG"} ! membranous labyrinth @@ -76802,6 +76942,7 @@ xref: UMLS:C1278895 {source="BIRNLEX:1190"} xref: VHOG:0000691 xref: XAO:0000197 xref: ZFA:0000374 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: has_quality PATO:0000404 {gci_relation="part_of", gci_filler="NCBITaxon:32525", source="Wikipedia"} ! coiled @@ -76875,7 +77016,7 @@ xref: UMLS:C1268973 {source="BIRNLEX:1196"} xref: VHOG:0000284 xref: XAO:0000192 xref: ZFA:0000217 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: develops_from UBERON:0003051 {evidence="definitional"} ! ear vesicle relationship: part_of UBERON:0001690 ! ear @@ -76919,6 +77060,7 @@ xref: EMAPA:35158 xref: FMA:61013 xref: http://www.snomedbrowser.com/Codes/Details/279627003 xref: MA:0001227 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: part_of UBERON:0001757 ! pinna @@ -76949,8 +77091,8 @@ xref: NCIT:C33090 xref: UMLS:C0458700 {source="ncithesaurus:Membranous_Labyrinth"} xref: VHOG:0000729 xref: XAO:0000194 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0003051 ! ear vesicle relationship: located_in UBERON:0004637 ! otic capsule relationship: part_of UBERON:0001846 {source="FMA", source="MA"} ! internal ear @@ -76969,6 +77111,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/280426002 xref: MA:0001295 is_a: UBERON:0000062 {source="FMA"} ! organ is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: channel_for UBERON:0001827 ! secretion of lacrimal gland relationship: connects UBERON:0001707 ! nasal cavity relationship: connects UBERON:0010284 ! lacrimal punctum @@ -77123,6 +77266,7 @@ xref: UMLS:C1323110 {source="ncithesaurus:Cochlear_Duct"} xref: UMLS:C1323110 {source="BIRNLEX:2562"} xref: VHOG:0000507 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002499 {source="FMA", source="MA"} ! cochlear labyrinth [Term] @@ -77140,6 +77284,7 @@ xref: NCIT:C33528 xref: UMLS:C1323109 {source="ncithesaurus:Semicircular_Duct"} xref: VHOG:0000238 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal relationship: part_of UBERON:0001862 {source="FMA", source="MA"} ! vestibular labyrinth @@ -77210,6 +77355,7 @@ xref: MESH:D004711 xref: TAO:0002194 xref: ZFA:0001705 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] @@ -77227,6 +77373,7 @@ xref: http://en.wikipedia.org/wiki/Canalis_reuniens_of_Hensen xref: http://www.snomedbrowser.com/Codes/Details/279805009 xref: MA:0000244 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connects UBERON:0001854 {source="Wikipedia"} ! saccule of membranous labyrinth relationship: connects UBERON:0001855 {source="Wikipedia"} ! cochlear duct of membranous labyrinth relationship: part_of UBERON:0001862 {source="EMAPA"} ! vestibular labyrinth @@ -77255,6 +77402,7 @@ xref: NCIT:C33871 xref: UMLS:C0042606 {source="ncithesaurus:Vestibular_Labyrinth"} xref: XAO:0004145 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] @@ -77303,8 +77451,8 @@ synonym: "meatus acusticus externus cartilagineus" EXACT LATIN [FMA:61289, FMA:T xref: EMAPA:37525 {source="MA:th"} xref: FMA:61289 xref: MA:0001234 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0001352 ! external acoustic meatus @@ -77413,6 +77561,8 @@ xref: UMLS:C0228174 {source="ncithesaurus:Cerebral_Hemisphere"} xref: UMLS:C0242202 {source="BIRNLEX:1042"} xref: VHOG:0001639 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0000955 ! brain relationship: in_lateral_side_of UBERON:0001893 {source="FMA-abduced-lr"} ! telencephalon @@ -77639,7 +77789,6 @@ xref: NCIT:C12449 xref: PBA:10097 xref: UMLS:C0017651 {source="ncithesaurus:Globus_Pallidus"} xref: UMLS:C0017651 {source="BIRNLEX:1234"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009663 ! telencephalic nucleus relationship: contributes_to_morphology_of UBERON:0010011 ! collection of basal ganglia relationship: develops_from UBERON:0001894 ! diencephalon @@ -78032,6 +78181,7 @@ xref: NCIT:C32452 xref: UMLS:C0152314 {source="ncithesaurus:Dentate_Gyrus"} is_a: UBERON:0000200 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! gyrus is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="MA"} ! hippocampal formation [Term] @@ -78208,9 +78358,7 @@ xref: ZFA:0000109 is_a: UBERON:0002616 ! regional part of brain disjoint_from: UBERON:0002298 ! brainstem relationship: contributes_to_morphology_of UBERON:0000955 ! brain -relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0003080 ! anterior neural tube -relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0006240 ! future forebrain relationship: immediate_transformation_of UBERON:0006240 {evidence="definitional"} ! future forebrain relationship: part_of UBERON:0000955 ! brain @@ -78262,8 +78410,6 @@ xref: ZFA:0000128 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000955 ! brain -relationship: develops_from UBERON:0002346 ! neurectoderm -relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0009616 ! presumptive midbrain relationship: has_developmental_contribution_from UBERON:0003849 {evidence="definitional"} ! mesencephalic neural crest relationship: immediate_transformation_of UBERON:0009616 {source="Bgee:AN"} ! presumptive midbrain @@ -78347,9 +78493,6 @@ xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest -relationship: develops_from UBERON:0002346 ! neurectoderm -relationship: develops_from UBERON:0006238 ! future brain -relationship: develops_from UBERON:0006240 ! future forebrain relationship: develops_from UBERON:0014371 ! future telencephalon relationship: immediate_transformation_of UBERON:0014371 {source="Bgee:AN"} ! future telencephalon relationship: part_of UBERON:0001890 ! forebrain @@ -78413,10 +78556,7 @@ xref: ZFA:0000101 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001890 ! forebrain -relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0006222 ! future diencephalon -relationship: develops_from UBERON:0006238 ! future brain -relationship: develops_from UBERON:0006240 ! future forebrain relationship: has_developmental_contribution_from UBERON:0003851 {evidence="definitional"} ! diencephalon neural crest relationship: immediate_transformation_of UBERON:0006222 {evidence="definitional"} ! future diencephalon relationship: part_of UBERON:0001890 ! forebrain @@ -78453,9 +78593,7 @@ xref: NCIT:C32741 xref: UMLS:C0376353 {source="BIRNLEX:965"} xref: UMLS:C1516904 {source="ncithesaurus:Epencephalon"} xref: VHOG:0000741 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004733 ! segmental subdivision of hindbrain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0002028 ! hindbrain property_value: dc-contributor https://github.com/cmungall relationship: develops_from NCBITaxon:6072 ! Eumetazoa @@ -78519,6 +78657,8 @@ xref: VHOG:0000181 xref: XAO:0003100 xref: ZFA:0000545 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of GO:0002027 ! regulation of heart rate relationship: capable_of GO:0043576 ! regulation of respiratory gaseous exchange relationship: capable_of GO:0044058 ! regulation of digestive system process @@ -78759,7 +78899,6 @@ xref: MA:0001862 xref: NCIT:C33797 xref: UMLS:C1179002 {source="ncithesaurus:Tracheal_Epithelium"} xref: VHOG:0001045 -is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003126 ! trachea @@ -79198,6 +79337,7 @@ synonym: "mammary gland lobule" EXACT [MA:0000793] xref: EMAPA:36634 xref: FMA:62090 xref: MA:0000793 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009911 {source="FMA"} ! lobule relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -79914,6 +80054,7 @@ xref: MA:0000841 xref: MBA:173 xref: UMLS:C0262326 {source="BIRNLEX:1569"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002272 ! medial zone of hypothalamus relationship: part_of UBERON:0002555 {source="FMA", source="NIFSTD"} ! intermediate hypothalamic region @@ -80460,6 +80601,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/244437008 xref: NCIT:C33969 xref: UMLS:C1268166 {source="ncithesaurus:Spinal_Cord_Part"} is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002240 ! spinal cord @@ -80523,6 +80665,7 @@ xref: MESH:A08.186.211.730.885.213.420 xref: PBA:294021746 xref: UMLS:C0175173 {source="BIRNLEX:2547"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000956 ! cerebral cortex relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0000956 ! cerebral cortex @@ -80608,6 +80751,8 @@ xref: MA:0000923 xref: MBA:1084 xref: UMLS:C0175194 {source="BIRNLEX:1108"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus @@ -80662,6 +80807,7 @@ xref: UMLS:C0019564 {source="ncithesaurus:Hippocampus"} xref: UMLS:C0019564 {source="BIRNLEX:721"} xref: VHOG:0001177 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory relationship: only_in_taxon NCBITaxon:40674 {source="http://en.wikipedia.org/wiki/Hippocampus"} ! Mammalia relationship: part_of UBERON:0000349 {source="FMA"} ! limbic system @@ -80738,6 +80884,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/85546005 xref: MA:0001837 xref: NCIT:C49214 xref: UMLS:C0225601 {source="ncithesaurus:Bronchus_Submucosa"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002185 ! bronchus @@ -80786,7 +80933,6 @@ xref: MA:0000762 xref: NCIT:C12993 xref: UMLS:C0229686 {source="ncithesaurus:Splenic_White_Pulp"} xref: White:pulp -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1000023 ! spleen pulp relationship: composed_primarily_of CL:0000542 ! lymphocyte relationship: contributes_to_morphology_of UBERON:0002106 ! spleen @@ -80869,6 +81015,7 @@ xref: MA:0000135 xref: NCIT:C32234 xref: UMLS:C1179418 {source="ncithesaurus:Bronchus-Associated_Lymphoid_Tissue"} is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -80932,6 +81079,7 @@ xref: NCIT:C97341 xref: UMLS:C0175412 {source="BIRNLEX:990"} xref: UMLS:C0175412 {source="ncithesaurus:Pars_Compacta"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000700 ! dopaminergic neuron relationship: part_of UBERON:0002038 ! substantia nigra @@ -80975,6 +81123,7 @@ xref: MBA:381 xref: Pars:reticulata xref: UMLS:C0175413 {source="BIRNLEX:968"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002038 ! substantia nigra [Term] @@ -81048,6 +81197,7 @@ xref: MIAA:0000052 xref: NCIT:C13356 xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw xref: UMLS:C0032105 {source="ncithesaurus:Plasma"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000179 ! haemolymphatic fluid intersection_of: UBERON:0000463 ! organism substance intersection_of: has_part GO:0005577 ! fibrinogen complex @@ -81169,6 +81319,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1707949 xref: MA:0001568 xref: NCIT:C49223 xref: UMLS:C1707949 {source="ncithesaurus:Esophageal_Lamina_Propria"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001043 ! esophagus @@ -81260,6 +81411,7 @@ xref: MA:0002502 xref: NCIT:C13325 xref: Serum:(blood) xref: UMLS:C0229671 {source="ncithesaurus:Serum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000179 ! haemolymphatic fluid relationship: has_quality PATO:0001548 ! quality of a liquid relationship: part_of UBERON:0001969 ! blood plasma @@ -81567,8 +81719,8 @@ xref: NCIT:C13272 xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA xref: UMLS:C0032043 {source="ncithesaurus:Placenta"} xref: VHOG:0001266 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: develops_from UBERON:0000995 {source="ISBN:0073040584"} ! uterus relationship: develops_from UBERON:0003124 {source="Wikipedia"} ! chorion membrane @@ -81730,7 +81882,7 @@ xref: NCIT:C94819 xref: Papillary:dermis xref: UMLS:C0221930 {source="ncithesaurus:Stratum_Papillare"} xref: UMLS:C0682598 {source="ncithesaurus:Papillary_Dermis"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: composed_primarily_of UBERON:0006815 {source="WP"} ! areolar connective tissue relationship: composed_primarily_of UBERON:0011822 {source="FMA-text"} ! dense irregular connective tissue @@ -81759,6 +81911,7 @@ xref: NCIT:C94818 xref: Reticular:dermis xref: UMLS:C0682599 {source="ncithesaurus:Reticular_Dermis"} xref: UMLS:C1514988 {source="ncithesaurus:Stratum_Reticulare"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin relationship: deep_to UBERON:0001992 ! papillary layer of dermis @@ -81879,7 +82032,6 @@ xref: VHOG:0000985 xref: ZFA:0000554 is_a: UBERON:0005384 ! nasal cavity epithelium is_a: UBERON:0006934 ! sensory epithelium -is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0010499 {source="FMA"} ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0006934 ! sensory epithelium intersection_of: part_of UBERON:0005386 ! olfactory segment of nasal mucosa @@ -81889,7 +82041,6 @@ relationship: contributes_to_morphology_of UBERON:0005725 ! olfactory system relationship: develops_from UBERON:0000033 ! head relationship: develops_from UBERON:0000076 ! external ectoderm relationship: develops_from UBERON:0000153 ! anterior region of body -relationship: develops_from UBERON:0003050 ! olfactory placode relationship: develops_from UBERON:0007811 ! craniocervical region relationship: develops_from UBERON:0013701 ! main body axis relationship: develops_from UBERON:0013702 ! body proper @@ -81994,6 +82145,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/263314001 xref: MA:0001508 xref: NCIT:C49575 xref: UMLS:C1261194 {source="ncithesaurus:Joint_of_the_Rib"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0002228 ! rib @@ -82076,7 +82228,7 @@ xref: MIAA:0000102 xref: TAO:0001155 xref: UMLS:C0206111 {source="BIRNLEX:1166"} xref: ZFA:0001155 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0002410 ! autonomic nervous system relationship: develops_from UBERON:0005428 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest", source="Wikipedia", source="ZFA"} ! vagal neural crest @@ -82097,6 +82249,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0933402 xref: MA:0000740 xref: NCIT:C33029 xref: UMLS:C0933402 {source="ncithesaurus:Lymph_Node_Cortex"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0000029 ! lymph node @@ -82114,6 +82267,7 @@ synonym: "medulla nodi lymphoidei" RELATED LATIN [http://en.wikipedia.org/wiki/M xref: EMAPA:35529 xref: FMA:66254 xref: MA:0000745 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0000029 ! lymph node @@ -82318,6 +82472,7 @@ xref: Kidney:capsule xref: MA:0000370 xref: NCIT:C12885 xref: UMLS:C0227637 {source="ncithesaurus:Renal_Capsule"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003567 ! abdomen connective tissue is_a: UBERON:0011824 ! fibrous connective tissue intersection_of: UBERON:0011824 ! fibrous connective tissue @@ -82704,7 +82859,7 @@ xref: TAO:0001180 xref: UMLS:C0221925 {source="ncithesaurus:Stratum_Basale"} xref: XAO:0000041 xref: ZFA:0001180 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: composed_primarily_of CL:0002187 ! basal cell of epidermis @@ -82735,7 +82890,7 @@ xref: MA:0000807 xref: NCIT:C12850 xref: Stratum:spinosum xref: UMLS:C0221924 {source="ncithesaurus:Stratum_Spinosum"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: composed_primarily_of CL:0000649 ! prickle cell @@ -82819,8 +82974,6 @@ xref: ZFA:0000029 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000955 ! brain -relationship: develops_from UBERON:0002346 ! neurectoderm -relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0007277 ! presumptive hindbrain relationship: immediate_transformation_of UBERON:0007277 {source="Bgee:AN"} ! presumptive hindbrain relationship: only_in_taxon NCBITaxon:89593 ! Craniata @@ -82849,6 +83002,7 @@ xref: MA:0001632 xref: NCIT:C49227 xref: UMLS:C1180206 {source="ncithesaurus:Gallbladder_Epithelium"} is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002110 ! gall bladder relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder @@ -82915,7 +83069,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0599333 xref: MA:0001839 xref: NCIT:C32231 xref: UMLS:C0599333 {source="ncithesaurus:Bronchial_Epithelium"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008397 ! tracheobronchial epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002185 ! bronchus @@ -82938,6 +83091,7 @@ xref: MA:0000788 xref: NCIT:C12368 xref: OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA xref: UMLS:C0222608 {source="ncithesaurus:Areola"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 {source="MA"} ! mammary gland @@ -83129,6 +83283,7 @@ xref: VHOG:0000024 xref: XAO:0003098 xref: ZFA:0000100 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of NBO:0000347 ! gross motor coordination relationship: contributes_to_morphology_of UBERON:0001895 ! metencephalon relationship: develops_from UBERON:0006215 {evidence="definitional"} ! rhombic lip @@ -83332,8 +83487,8 @@ xref: DMBA:16629 xref: EMAPA:35597 xref: FMA:68464 xref: HBA:9047 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 {source="BIRNLEX:896"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 xref: http://linkedlifedata.com/resource/umls/id/C0262291 xref: http://www.snomedbrowser.com/Codes/Details/369250001 xref: MA:0001072 @@ -83493,8 +83648,8 @@ xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA xref: UMLS:C0024109 {source="ncithesaurus:Lung"} xref: VHOG:0000310 xref: XAO:0000119 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000171 ! respiration organ +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system @@ -83604,6 +83759,8 @@ xref: MA:0000117 xref: NCIT:C32050 xref: UMLS:C1181304 {source="ncithesaurus:Adrenal_Gland_Capsule"} is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0002369 ! adrenal gland relationship: bounding_layer_of UBERON:0002369 ! adrenal gland @@ -83630,7 +83787,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/21476003 xref: MA:0001891 xref: MESH:D015384 xref: Zona:glomerulosa -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: capable_of GO:0032342 ! aldosterone biosynthetic process relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex @@ -83654,7 +83810,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/56069004 xref: MA:0001890 xref: MESH:D015383 xref: Zona:fasciculata -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex relationship: has_part CL:0002136 {source="FMA"} ! type II cell of adrenal cortex @@ -83678,7 +83833,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/47325000 xref: MA:0001892 xref: MESH:D015385 xref: Zona:reticularis -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009753 {source="MA"} ! adrenal gland cortex zone relationship: contributes_to_morphology_of UBERON:0001235 ! adrenal cortex relationship: has_part CL:0002137 {source="FMA"} ! type III cell of adrenal cortex @@ -83899,7 +84053,6 @@ xref: VHOG:0000177 xref: ZFA:0000154 is_a: UBERON:0004151 ! cardiac chamber disjoint_from: UBERON:0006615 ! venous sinus -relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0007278 ! presumptive sinus venosus relationship: immediate_transformation_of UBERON:0007278 {source="Bgee:AN"} ! presumptive sinus venosus relationship: part_of UBERON:0002350 {source="VHOG"} ! conducting system of heart @@ -84067,8 +84220,8 @@ xref: NCIT:C12338 xref: RETIRED_EHDAA2:0002138 xref: UMLS:C0041916 {source="ncithesaurus:Urachus"} xref: VHOG:0000735 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: continuous_with UBERON:0007118 ! umbilicus relationship: develops_from UBERON:0004340 {source="EHDAA2"} ! allantois relationship: part_of UBERON:0001255 {source="EHDAA2"} ! urinary bladder @@ -84091,7 +84244,7 @@ xref: MA:0000805 xref: NCIT:C33627 xref: Stratum:granulosum xref: UMLS:C0221923 {source="ncithesaurus:Stratum_Granulosum"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: composed_primarily_of CL:0000712 ! stratum granulosum cell @@ -84142,7 +84295,7 @@ xref: NCIT:C33629 xref: Stratum:lucidum xref: UMLS:C0221922 {source="ncithesaurus:Stratum_Lucidum"} xref: UMLS:C1514985 {source="ncithesaurus:Stratum_Conjunctum"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: composed_primarily_of CL:0000312 ! keratinocyte relationship: immediately_deep_to UBERON:0002027 ! stratum corneum of epidermis @@ -84211,7 +84364,6 @@ xref: NCIT:C13317 xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA xref: UMLS:C0221971 {source="ncithesaurus:Hair_Follicle"} xref: VHOG:0001268 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036150 ! skin appendage follicle relationship: develops_from UBERON:0005086 ! hair follicle placode @@ -84234,6 +84386,8 @@ xref: MA:0000159 xref: NCIT:C33543 xref: UMLS:C0221961 {source="ncithesaurus:Shaft_of_the_Hair"} is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001037 {source="https://doi.org/10.1016/j.cub.2008.12.005"} ! strand of hair [Term] @@ -84279,6 +84433,8 @@ xref: EMAPA:35388 xref: FMA:70933 xref: MA:0000157 is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000119 ! cell layer intersection_of: bounding_layer_of UBERON:0002074 ! hair shaft relationship: bounding_layer_of UBERON:0002074 ! hair shaft @@ -84299,6 +84455,8 @@ xref: FMA:70934 xref: http://www.snomedbrowser.com/Codes/Details/318832008 xref: MA:0000156 is_a: UBERON:0001851 ! cortex +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001037 ! strand of hair @@ -84444,7 +84602,6 @@ xref: VHOG:0000175 xref: ZFA:0000471 is_a: UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart -relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0010227 ! future cardiac atrium relationship: immediate_transformation_of UBERON:0010227 ! future cardiac atrium @@ -84486,7 +84643,6 @@ xref: XAO:0003193 xref: ZFA:0000009 is_a: UBERON:0004151 ! cardiac chamber relationship: contributes_to_morphology_of UBERON:0000948 ! heart -relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0006283 ! future cardiac ventricle relationship: immediate_transformation_of UBERON:0006283 {source="Bgee:AN"} ! future cardiac ventricle @@ -84623,7 +84779,6 @@ relationship: connects UBERON:0002082 ! cardiac ventricle property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/mellybelly property_value: dc-contributor https://github.com/rfoulger -relationship: develops_from UBERON:0004141 ! heart tube relationship: develops_from UBERON:0007279 ! presumptive atrioventricular canal relationship: immediate_transformation_of UBERON:0007279 {source="Bgee:AN"} ! presumptive atrioventricular canal relationship: part_of UBERON:0011820 {source="EHDAA2"} ! atrioventricular region @@ -84887,6 +85042,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362009004 xref: MA:0000488 xref: NCIT:C32126 xref: UMLS:C0225811 {source="ncithesaurus:Apex_of_the_Heart"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 {source="FMA"} ! anatomical point relationship: part_of UBERON:0000948 ! heart @@ -85325,6 +85481,7 @@ synonym: "set of nares" RELATED [FMA:72005] xref: FMA:72005 xref: http://en.wikipedia.org/wiki/Nares xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034925 ! anatomical collection intersection_of: UBERON:0034925 ! anatomical collection intersection_of: has_member UBERON:0000003 {minCardinality="2", maxCardinality="2"} ! naris @@ -85554,7 +85711,6 @@ xref: NCIT:C12388 xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA xref: UMLS:C0022378 {source="ncithesaurus:Jejunum"} xref: VHOG:0000053 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 {order="3", source="cjm"} ! subdivision of digestive tract relationship: contributes_to_morphology_of UBERON:0002108 ! small intestine relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -85683,6 +85839,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/188181003 xref: MA:0000766 xref: NCIT:C33770 xref: UMLS:C0229945 {source="ncithesaurus:Thymic_Capsule"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0002370 ! thymus @@ -85705,7 +85862,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/188262003 xref: MA:0000767 xref: NCIT:C33774 xref: UMLS:C0229948 {source="ncithesaurus:Thymus_Cortex"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002370 ! thymus @@ -85734,6 +85891,7 @@ xref: MA:0000771 xref: Medulla xref: NCIT:C33775 xref: UMLS:C0229949 {source="ncithesaurus:Thymus_Medulla"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000958 ! medulla of organ intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002370 ! thymus @@ -85754,7 +85912,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/187882006 xref: MA:0000770 xref: NCIT:C33772 xref: UMLS:C1522462 {source="ncithesaurus:Thymic_Lobule"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule intersection_of: part_of UBERON:0002370 ! thymus @@ -86575,12 +86733,9 @@ xref: http://www.snomedbrowser.com/Codes/Details/369028007 xref: MA:0001027 xref: MBA:462 xref: UMLS:C0175447 {source="BIRNLEX:1131"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata -relationship: develops_from UBERON:0001016 ! nervous system -relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010125 ! future superior salivatory nucleus relationship: immediate_transformation_of UBERON:0010125 {evidence="definitional"} ! future superior salivatory nucleus relationship: part_of UBERON:0001896 {source="NIFSTD"} ! medulla oblongata @@ -86994,6 +87149,7 @@ xref: UMLS:C0228530 {source="BIRNLEX:2636"} xref: UMLS:C1289468 {source="BIRNLEX:2636"} xref: ZFA:0005146 is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 {source="MA", source="ZFA"} ! medulla oblongata relationship: part_of UBERON:0002422 ! fourth ventricle @@ -87093,8 +87249,6 @@ xref: XAO:0000066 xref: ZFA:0001320 is_a: UBERON:0002523 ! tunica intima is_a: UBERON:0005983 ! heart layer -relationship: develops_from NCBITaxon:6072 ! Eumetazoa -relationship: develops_from UBERON:0005498 ! primitive heart tube relationship: develops_from UBERON:0007280 ! presumptive endocardium relationship: has_part UBERON:0005316 ! endocardial endothelium relationship: immediate_transformation_of UBERON:0007280 {source="Bgee:AN"} ! presumptive endocardium @@ -87283,6 +87437,7 @@ xref: FMA:7340 xref: http://www.snomedbrowser.com/Codes/Details/201806004 xref: MA:0000419 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] @@ -87520,7 +87675,6 @@ xref: NCIT:C12284 xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA xref: UMLS:C0024496 {source="ncithesaurus:Main_Bronchus"} xref: VHOG:0000370 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002185 ! bronchus relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium relationship: distally_connected_to UBERON:0002183 ! lobar bronchus @@ -87766,6 +87920,7 @@ xref: PBA:10054 xref: PBA:128012354 xref: UMLS:C0152316 {source="ncithesaurus:Subiculum"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007613 {source="Wikipedia"} ! memory relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation @@ -87800,6 +87955,7 @@ xref: TAO:0001075 xref: UMLS:C0262212 {source="ncithesaurus:Choroidal_Fissure"} xref: VHOG:0001756 xref: ZFA:0001075 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0005412 ! optic fissure relationship: part_of UBERON:0005358 ! ventricle of nervous system @@ -87834,6 +87990,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/327532004 xref: MA:0000739 xref: NCIT:C33028 xref: UMLS:C0229699 {source="ncithesaurus:Lymph_Node_Capsule"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0000029 ! lymph node @@ -87856,6 +88013,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1184179 xref: MA:0000746 xref: NCIT:C33035 xref: UMLS:C1184179 {source="ncithesaurus:Lymph_Node_Trabecula"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000440 ! trabecula intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0000029 ! lymph node @@ -88133,6 +88291,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/4419000 xref: MA:0001860 xref: NCIT:C49307 xref: UMLS:C0225586 {source="ncithesaurus:Trachea_Submucosa"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0003126 ! trachea @@ -88274,6 +88433,7 @@ xref: UMLS:C0024670 {source="ncithesaurus:Mamillary_Body"} xref: UMLS:C1305759 {source="BIRNLEX:865"} xref: ZFA:0000334 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0000349 {source="GO"} ! limbic system relationship: part_of UBERON:0002272 {source="ABA"} ! medial zone of hypothalamus @@ -88305,6 +88465,7 @@ xref: MA:0001334 xref: NCIT:C33895 xref: UMLS:C0043356 {source="ncithesaurus:Xiphoid_Process"} xref: Xiphoid:process +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000975 ! sternum relationship: serially_homologous_to UBERON:0002208 {subset="musculoskeletal", source="ISBN:0073040584"} ! sternebra @@ -88580,6 +88741,7 @@ xref: MESH:A08.713.840 xref: NLXANAT:100314 xref: Subfornical:organ is_a: UBERON:0010135 {source="MA"} ! sensory circumventricular organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002663 {source="MA-modified"} ! septal nuclear complex [Term] @@ -88602,6 +88764,7 @@ xref: NCIT:C32621 xref: TAO:0001738 xref: UMLS:C0224548 {source="ncithesaurus:Fontanelle"} xref: ZFA:0005536 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002209 {source="FMA"} ! fibrous joint is_a: UBERON:0003685 ! cranial suture relationship: adjacent_to UBERON:0003685 ! cranial suture @@ -88628,6 +88791,7 @@ xref: TAO:0001643 xref: VSAO:0000036 xref: XAO:0004049 xref: ZFA:0001634 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 {source="VSAO"} ! connective tissue relationship: bounding_layer_of UBERON:0007844 ! cartilage element property_value: dc-contributor https://github.com/cmungall @@ -88653,7 +88817,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279810008 xref: MA:0001188 xref: MESH:D004712 xref: VHOG:0000791 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006937 ! inner ear epithelium is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac relationship: develops_from UBERON:0006226 {source="EHDAA2"} ! endolymphatic appendage @@ -88684,6 +88847,7 @@ xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA xref: Thoracic:cavity xref: UMLS:C0230139 {source="ncithesaurus:Thoracic_Cavity"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000915 ! thoracic segment of trunk @@ -88709,6 +88873,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/367767002 xref: MA:0001396 xref: NCIT:C52715 xref: UMLS:C0230143 {source="ncithesaurus:Costal_Arch"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0002228 {source="MA"} ! rib @@ -88733,6 +88898,7 @@ xref: MESH:D001489 xref: NCIT:C13179 xref: UMLS:C0004816 {source="BIRNLEX:2521"} xref: UMLS:C0004816 {source="ncithesaurus:Basilar_Membrane"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane relationship: adjacent_to UBERON:0001864 ! scala tympani relationship: adjacent_to UBERON:0002295 ! scala media @@ -88773,6 +88939,7 @@ xref: UMLS:C0029207 {source="ncithesaurus:Organ_of_Corti"} xref: UMLS:C0029207 {source="BIRNLEX:2526"} xref: VHOG:0001567 is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: capable_of GO:0050910 ! detection of mechanical stimulus involved in sensory perception of sound relationship: dubious_for_taxon NCBITaxon:8292 ! Amphibia relationship: dubious_for_taxon NCBITaxon:8457 ! Sauropsida @@ -88929,6 +89096,7 @@ xref: NCIT:C33740 xref: UMLS:C0039432 {source="ncithesaurus:Tectorial_Membrane"} xref: UMLS:C1184928 {source="BIRNLEX:2531"} is_a: CARO:0000003 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="Wikipedia"} ! acellular membrane relationship: attaches_to UBERON:0002276 {notes="limbal zone"} ! lamina of spiral limbus relationship: part_of RO:0002577 ! system @@ -88978,6 +89146,7 @@ xref: MA:0001417 xref: NCIT:C52729 xref: Tubercle:(rib) xref: UMLS:C0222809 {source="ncithesaurus:Rib_Tubercle"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection intersection_of: UBERON:0005813 ! tubercle @@ -89143,6 +89312,7 @@ xref: http://en.wikipedia.org/wiki/Chondrocranium xref: TAO:0001424 xref: VHOG:0000288 xref: ZFA:0001424 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011159 ! primary subdivision of cranial skeletal system [Term] @@ -89165,6 +89335,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/316586000 xref: MA:0000112 xref: Nucleus:pulposus is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001066 ! intervertebral disk relationship: develops_from UBERON:0002328 {editor="mah", source="ISBN:0073040584", source="Wikipedia"} ! notochord @@ -89321,6 +89492,7 @@ xref: FMA:77053 xref: http://www.snomedbrowser.com/Codes/Details/245480007 xref: MA:0000393 xref: Uterine:horns +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0015212 ! lateral structure @@ -89445,6 +89617,7 @@ xref: Thyroglossal:duct xref: UMLS:C0231104 {source="ncithesaurus:Thyroglossal_Duct"} xref: VHOG:0000746 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure relationship: part_of UBERON:0002046 {source="MA", source="VHOG"} ! thyroid gland @@ -89636,8 +89809,8 @@ xref: MA:0002567 xref: MESH:A08.186.211.132.659.237 xref: NCIT:C12461 xref: UMLS:C0010087 {source="ncithesaurus:Corpora_Quadrigemina"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002314 ! midbrain tectum relationship: develops_from UBERON:0006777 ! tectal plate relationship: part_of UBERON:0002314 ! midbrain tectum @@ -89762,7 +89935,6 @@ xref: MA:0000896 xref: NCIT:C32977 xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA xref: UMLS:C0162342 {source="ncithesaurus:Lenticular_Nucleus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002308 {source="FMA"} ! nucleus of brain is_a: UBERON:0009663 ! telencephalic nucleus relationship: has_part UBERON:0001874 ! putamen @@ -89797,8 +89969,8 @@ xref: EV:0100173 xref: FMA:77624 xref: GAID:633 xref: HBA:9303 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=279 {source="BIRNLEX:1137"} xref: http://linkedlifedata.com/resource/umls/id/C0028936 xref: http://www.snomedbrowser.com/Codes/Details/279394006 xref: MA:0000194 @@ -89812,6 +89984,7 @@ xref: VHOG:0000033 xref: XAO:0004180 xref: ZFA:0000402 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure disjoint_from: UBERON:0010010 {source="NIFSTD"} ! basal nucleus of telencephalon relationship: capable_of GO:0007608 ! sensory perception of smell @@ -89944,6 +90117,7 @@ xref: FMA:77663 xref: http://en.wikipedia.org/wiki/Persistent_pupillary_membrane xref: MA:0001293 is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: located_in UBERON:0001771 {source="MA-modified"} ! pupil relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001769 ! iris @@ -90015,6 +90189,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2291 xref: MA:0000837 xref: MBA:467 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0002273 {source="lexical"} ! lateral zone of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus @@ -90032,6 +90207,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2290 xref: MA:0000833 xref: MBA:290 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001898 ! hypothalamus [Term] @@ -90085,6 +90261,7 @@ xref: FMA:77721 xref: http://en.wikipedia.org/wiki/Limbus_laminae_spiralis xref: MA:0001191 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] @@ -90095,6 +90272,7 @@ synonym: "sulcus spiralis" EXACT [] xref: EMAPA:35800 xref: FMA:77744 xref: MA:0001195 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth @@ -90111,6 +90289,7 @@ xref: FMA:77745 xref: http://www.snomedbrowser.com/Codes/Details/362576001 xref: Perilymphatic:space xref: ZFA:0005459 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0001839 ! bony labyrinth relationship: adjacent_to UBERON:0001849 ! membranous labyrinth @@ -90128,6 +90307,7 @@ xref: GAID:885 xref: MA:0001186 xref: MESH:D014723 xref: Vestibular:aqueduct +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0036074 ! vein of vestibular aqueduct @@ -90162,6 +90342,7 @@ xref: TAO:0001621 xref: UMLS:C0029894 {source="ncithesaurus:Otolith"} xref: ZFA:0001617 is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: capable_of_part_of GO:0009590 ! detection of gravity relationship: composed_primarily_of CHEBI:3311 ! calcium carbonate relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -90189,6 +90370,7 @@ xref: MA:0001200 xref: NCIT:C33083 xref: Reissner's:membrane is_a: UBERON:0000094 ! membrane organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001863 ! scala vestibuli relationship: adjacent_to UBERON:0002295 ! scala media relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth @@ -90220,6 +90402,7 @@ xref: MESH:D013316 xref: Stria:vascularis xref: UMLS:C0229477 {source="BIRNLEX:2525"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_developmental_contribution_from UBERON:0002342 {notes="pigment cells", source="NCBIBook:NBK53175"} ! neural crest relationship: part_of UBERON:0001855 {source="FMA", source="MA"} ! cochlear duct of membranous labyrinth @@ -90238,6 +90421,7 @@ xref: EMAPA:35582 xref: FMA:77856 xref: MA:0002707 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001705 ! nail relationship: site_of GO:0008283 ! cell population proliferation @@ -90389,6 +90573,7 @@ xref: Optic:recess xref: TAO:0000049 xref: VHOG:0000595 xref: ZFA:0000049 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002286 ! third ventricle @@ -90514,6 +90699,7 @@ xref: VHOG:0001375 xref: ZFA:0001446 is_a: UBERON:0001886 ! choroid plexus is_a: UBERON:0006694 ! cerebellum vasculature +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002037 ! cerebellum @@ -90753,6 +90939,7 @@ xref: VHOG:0001457 xref: ZFA:0001707 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: continuous_with UBERON:0002240 ! spinal cord relationship: contributes_to_morphology_of UBERON:0000955 ! brain relationship: has_part UBERON:0001896 ! medulla oblongata @@ -90787,6 +90974,7 @@ xref: MESH:D011650 xref: Pulmonary:alveolus xref: VHOG:0001445 is_a: UBERON:0003215 ! alveolus +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0002048 ! lung relationship: contains_process GO:0007585 ! respiratory gaseous exchange by respiratory system @@ -91268,8 +91456,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0017655 xref: MA:0002617 xref: NCIT:C33101 xref: UMLS:C0017655 {source="ncithesaurus:Mesangium"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000119 ! cell layer intersection_of: composed_primarily_of CL:0000650 ! mesangial cell intersection_of: located_in UBERON:0005777 ! glomerular basement membrane @@ -91294,6 +91482,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/244574009 xref: MA:0002606 xref: MESH:A05.810.453.736.520.380 is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0002319 ! mesangium relationship: part_of UBERON:0004190 {source="GO"} ! renal glomerulus vasculature @@ -91307,6 +91496,7 @@ xref: EMAPA:28278 xref: FMA:84141 xref: MA:0002602 is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001229 {source="MA"} ! renal corpuscle relationship: part_of UBERON:0002303 {source="MA"} ! juxtaglomerular apparatus relationship: part_of UBERON:0002319 {source="MA"} ! mesangium @@ -91395,9 +91585,11 @@ xref: http://linkedlifedata.com/resource/umls/id/C1710584 xref: MA:0001686 xref: NCIT:C49309 xref: UMLS:C1710584 {source="ncithesaurus:Urethra_Epithelium"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003914 {source="GO"} ! epithelial tube is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0006555 ! excretory tube +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -91416,6 +91608,7 @@ xref: EMAPA:37785 {source="MA:th"} xref: FMA:85276 xref: MA:0001689 is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -91470,6 +91663,7 @@ xref: VSAO:0000032 xref: XAO:0000055 xref: ZFA:0000135 is_a: UBERON:0000481 {source="VSAO"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/wdahdul @@ -91583,7 +91777,6 @@ xref: NCIT:C34320 xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA xref: Umbilical:cord xref: UMLS:C0041633 {source="ncithesaurus:Umbilical_Cord"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: connects UBERON:0000922 ! embryo relationship: connects UBERON:0001987 ! placenta @@ -91637,6 +91830,7 @@ xref: NCIT:C33649 xref: Submandibular:duct xref: UMLS:C0227472 {source="ncithesaurus:Submandibular_Duct"} is_a: UBERON:0001837 ! duct of salivary gland +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001837 ! duct of salivary gland intersection_of: part_of UBERON:0001736 ! submandibular gland relationship: channels_from UBERON:0001736 ! submandibular gland @@ -91715,6 +91909,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/254115004 xref: MA:0002734 xref: NCIT:C32516 xref: UMLS:C0227849 {source="ncithesaurus:Endometrial_Stroma"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma @@ -91750,6 +91945,7 @@ xref: MA:0001836 xref: NCIT:C49212 xref: UMLS:C1707054 {source="ncithesaurus:Bronchus_Lamina_Propria"} is_a: UBERON:0000031 ! lamina propria of trachea +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0000410 {is_inferred="true", source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! bronchial mucosa @@ -91903,6 +92099,7 @@ xref: EMAPA:18605 xref: FMA:87217 xref: http://www.snomedbrowser.com/Codes/Details/181301002 xref: MA:0002572 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001514 ! descending aorta relationship: contributes_to_morphology_of UBERON:0001515 ! thoracic aorta @@ -92279,7 +92476,6 @@ xref: MESH:A01.673 xref: NCIT:C12767 xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA xref: UMLS:C0030797 {source="ncithesaurus:Pelvis"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000475 ! organism subdivision relationship: has_part UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0002417 ! abdominal segment of trunk @@ -92744,7 +92940,6 @@ xref: VHOG:0001141 xref: XAO:0000164 is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006858 ! adrenal/interrenal gland -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: has_developmental_contribution_from UBERON:0000926 {source="Wikipedia"} ! mesoderm relationship: has_developmental_contribution_from UBERON:0002342 {source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! neural crest @@ -92837,6 +93032,7 @@ xref: UMLS:C0005953 {source="ncithesaurus:Bone_Marrow"} xref: VHOG:0001218 xref: XAO:0000123 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000479 ! tissue intersection_of: has_part UBERON:0012429 ! hematopoietic tissue intersection_of: part_of UBERON:0001474 ! bone element @@ -92905,6 +93101,7 @@ xref: Palatine:tonsil xref: UMLS:C0040421 {source="ncithesaurus:Palatine_Tonsil"} xref: VHOG:0001140 is_a: UBERON:0002372 ! tonsil +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010023 {notes="the dorsal elongation of the second pouch endoderm of all mammals, with the exception of rodents, gives rise to the epithelial lining of palatine tonsils; in rodents, the ventral portion of the second pouch appears to degenerate whereas the remaining part is incorporated into the lateral border of the pharynx; it appears that rodents no longer require tonsils as their function is carried out by the NALT (Nose/Nasal-Associated Lymphoid Tissue) system in the upper respiratory tract", source="http://www.ncbi.nlm.nih.gov/pubmed/20144910", source="ISBN:1607950324", source="MP:anna"} ! dorsal part of pharyngeal pouch 2 relationship: dubious_for_taxon NCBITaxon:9989 {source="http://www.ncbi.nlm.nih.gov/pubmed/20144910"} ! Rodentia @@ -93112,6 +93309,7 @@ xref: Trapezius:muscle xref: UMLS:C0224361 {source="ncithesaurus:Trapezius_Muscle"} xref: VHOG:0000834 is_a: UBERON:0001482 ! muscle of shoulder +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0010955 ! trapezius pre-muscle mass relationship: has_muscle_antagonist UBERON:0001112 {source="dbpedia"} ! latissimus dorsi muscle @@ -93178,6 +93376,7 @@ xref: VHOG:0000863 xref: XAO:0004128 is_a: UBERON:0002461 ! anterior abdominal wall muscle is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: has_muscle_insertion UBERON:0000975 ! sternum relationship: has_muscle_origin UBERON:0007832 ! pelvic girdle skeleton relationship: part_of UBERON:0006635 {source="VHOG"} ! anterior abdominal wall @@ -93533,9 +93732,9 @@ xref: NCIT:C33161 xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA xref: UMLS:C0027437 {source="ncithesaurus:Nasolacrimal_Duct"} xref: VHOG:0000664 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: channel_for UBERON:0001827 ! secretion of lacrimal gland relationship: connects UBERON:0001351 ! lacrimal sac relationship: connects UBERON:0001707 ! nasal cavity @@ -93789,7 +93988,6 @@ xref: NCIT:C32981 xref: UMLS:C0230260 {source="ncithesaurus:Lesser_Omentum"} xref: VHOG:0000357 is_a: UBERON:0003688 ! omentum -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009870 ! zone of stomach relationship: develops_from UBERON:0005626 {source="EHDAA2", source="Wikipedia"} ! ventral mesogastrium relationship: part_of UBERON:0001178 {source="FMA"} ! visceral peritoneum @@ -93814,6 +94012,7 @@ xref: Parietal:pleura xref: UMLS:C0225777 {source="ncithesaurus:Parietal_Pleura"} xref: VHOG:0001495 is_a: CARO:0000003 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: adjacent_to UBERON:0002224 ! thoracic cavity @@ -93847,6 +94046,7 @@ xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA xref: UMLS:C0225776 {source="ncithesaurus:Visceral_Pleura"} xref: VHOG:0001496 is_a: CARO:0000003 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0022350 ! visceral serous membrane intersection_of: UBERON:0004923 ! organ component layer intersection_of: adjacent_to UBERON:0002048 ! lung @@ -94108,6 +94308,7 @@ xref: UMLS:C0004388 {source="BIRNLEX:1123"} xref: UMLS:C1305381 {source="BIRNLEX:1123"} xref: VHOG:0000396 xref: ZFA:0001574 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0001016 ! nervous system relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -94136,8 +94337,8 @@ xref: NCIT:C12308 xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA xref: UMLS:C0008984 {source="ncithesaurus:Clitoris"} xref: VHOG:0000700 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 {source="Wikipedia"} ! organ +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: contributes_to_morphology_of UBERON:0005056 ! external female genitalia relationship: develops_from UBERON:0005876 {source="EHDAA2", source="Wikipedia"} ! undifferentiated genital tubercle @@ -94393,6 +94594,7 @@ xref: FMA:71878 xref: http://www.snomedbrowser.com/Codes/Details/110485007 xref: MA:0000146 is_a: UBERON:0003297 ! gland of integumental system +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006003 ! integumentary adnexa intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002097 ! skin of body @@ -94452,6 +94654,7 @@ xref: MBA:1089 xref: PBA:4003 xref: UMLS:C0175202 {source="BIRNLEX:715"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:40674 {source="http://en.wikipedia.org/wiki/Hippocampus"} ! Mammalia relationship: part_of UBERON:0000203 {source="GO", source="ISBN:0471888893"} ! pallium relationship: part_of UBERON:0000956 {source="MBA-indirect", source="NIFSTD"} ! cerebral cortex @@ -94505,6 +94708,7 @@ xref: VHOG:0000006 xref: XAO:0003099 xref: ZFA:0000110 is_a: UBERON:0004086 ! brain ventricle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004086 ! brain ventricle intersection_of: part_of UBERON:0002028 ! hindbrain relationship: contributes_to_morphology_of UBERON:0002028 ! hindbrain @@ -94771,6 +94975,7 @@ xref: TAO:0001197 xref: VHOG:0001178 xref: ZFA:0001197 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0002198 ! neurohypophysis relationship: adjacent_to UBERON:0006377 ! remnant of Rathke's pouch relationship: contributes_to_morphology_of UBERON:0000007 ! pituitary gland @@ -94799,6 +95004,7 @@ xref: Pars:tuberalis xref: TAO:0001196 xref: VHOG:0001114 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis [Term] @@ -95206,6 +95412,7 @@ xref: RETIRED_EHDAA2:0000979 xref: UMLS:C0229224 {source="ncithesaurus:Lens_Fiber"} xref: VHOG:0000444 xref: XAO:0004096 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: composed_primarily_of CL:0011004 ! lens fiber cell @@ -95365,7 +95572,6 @@ xref: MESH:D003656 xref: MIAA:0000290 xref: NCIT:C32425 xref: UMLS:C0011106 {source="ncithesaurus:Decidua"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 {source="FMA"} ! extraembryonic structure relationship: contributes_to_morphology_of UBERON:0001987 ! placenta relationship: develops_from UBERON:0000459 ! uterine wall @@ -95394,6 +95600,7 @@ xref: NCIT:C33842 xref: UMLS:C1183035 {source="ncithesaurus:Uterine_Gland"} xref: Uterine:glands is_a: UBERON:0000414 {source="MP"} ! mucous gland +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0002530 ! gland @@ -95823,6 +96030,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362127004 xref: MA:0002680 xref: NCIT:C32538 xref: UMLS:C0227176 {source="ncithesaurus:Esophageal_Mucosa"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001043 ! esophagus @@ -96315,6 +96523,7 @@ xref: FMA:75147 xref: FMA:83698 xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_cavity xref: MA:0002783 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: dubious_for_taxon NCBITaxon:7955 {source="https://doi.org/10.1177/0192623311409597"} ! Danio rerio relationship: part_of UBERON:0001439 ! compact bone tissue @@ -96363,6 +96572,7 @@ xref: MA:0002788 xref: MESH:D005931 xref: NCIT:C12724 xref: UMLS:C0017681 {source="ncithesaurus:Glottis"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: contributes_to_morphology_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -96385,6 +96595,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362105008 xref: MA:0002792 xref: MESH:A14.254.900.265 xref: Tooth:cavity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity relationship: contributes_to_morphology_of UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001091 ! calcareous tooth @@ -96430,6 +96641,7 @@ xref: FMA:52928 xref: http://www.snomedbrowser.com/Codes/Details/244510008 xref: MA:0002795 xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: connects UBERON:0000209 ! tetrapod frontal bone @@ -96475,6 +96687,7 @@ xref: FMA:52933 xref: http://www.snomedbrowser.com/Codes/Details/361830007 xref: Lambdoid:suture xref: MA:0002797 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: connects UBERON:0000210 ! tetrapod parietal bone @@ -96499,6 +96712,7 @@ xref: FMA:52929 xref: http://www.snomedbrowser.com/Codes/Details/244511007 xref: MA:0002798 xref: Sagittal:suture +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003685 ! cranial suture intersection_of: UBERON:0003685 ! cranial suture intersection_of: connects UBERON:0000210 {minCardinality="2", maxCardinality="2"} ! tetrapod parietal bone @@ -96558,6 +96772,7 @@ xref: Papillary:muscle xref: UMLS:C0030352 {source="ncithesaurus:Papillary_Muscle"} xref: VHOG:0001392 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] @@ -96599,7 +96814,9 @@ synonym: "stapes footplate" EXACT [MA:0002804] xref: FMA:52769 xref: http://www.snomedbrowser.com/Codes/Details/279685009 xref: MA:0002804 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001687 ! stapes bone relationship: part_of UBERON:0001687 {source="MA"} ! stapes bone @@ -96652,6 +96869,7 @@ xref: Deltoid:tuberosity xref: EMAPA:25052 xref: FMA:23418 xref: MA:0002808 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0000976 ! humerus @@ -96672,6 +96890,7 @@ xref: MA:0002809 xref: NCIT:C32336 xref: UMLS:C0931689 {source="ncithesaurus:Cochlear_Labyrinth"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: located_in UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth @@ -96718,6 +96937,7 @@ xref: MA:0002813 xref: MESH:D010046 xref: NCIT:C32593 xref: Oval:window +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull is_a: UBERON:0036253 ! orifice of skull relationship: part_of UBERON:0001694 ! petrous part of temporal bone @@ -96741,6 +96961,7 @@ xref: MA:0002814 xref: MESH:D012405 xref: NCIT:C32594 xref: Round:window +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull is_a: UBERON:0036253 ! orifice of skull relationship: part_of UBERON:0001694 ! petrous part of temporal bone @@ -96795,6 +97016,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/149380004 xref: MA:0002824 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: branching_part_of UBERON:0018231 ! labyrinthine artery relationship: located_in UBERON:0006723 ! cochlear modiolus relationship: part_of UBERON:0001846 ! internal ear @@ -96881,6 +97103,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0229792 xref: MA:0002829 xref: NCIT:C77641 xref: UMLS:C0229792 {source="ncithesaurus:Mesenteric_Lymph_Node"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0015860 {source="FMA"} ! visceral abdominal lymph node intersection_of: UBERON:0002507 ! abdominal lymph node intersection_of: part_of UBERON:0002095 ! mesentery @@ -96928,8 +97151,8 @@ xref: FMA:7269 xref: http://www.snomedbrowser.com/Codes/Details/118755002 xref: MA:0002831 xref: Trabeculae:carneae -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: composed_primarily_of UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0002082 {source="WP"} ! cardiac ventricle @@ -97080,6 +97303,7 @@ xref: MESH:D019291 xref: MFMO:0000044 xref: NCIT:C12493 xref: UMLS:C0149543 {source="ncithesaurus:Base_of_the_Skull"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system relationship: contributes_to_morphology_of UBERON:0003128 ! cranium relationship: part_of UBERON:0001703 ! neurocranium @@ -97105,7 +97329,7 @@ xref: Otolith:organ xref: TAO:0000559 xref: VHOG:0001676 xref: ZFA:0000559 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006585 ! vestibular organ relationship: capable_of_part_of GO:0060007 ! linear vestibuloocular reflex relationship: develops_from UBERON:0003051 ! ear vesicle @@ -97127,6 +97351,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362571006 xref: MA:0002842 xref: MESH:D010037 xref: Otolithic:membrane +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane intersection_of: UBERON:0005764 ! acellular membrane intersection_of: composed_primarily_of UBERON:0002280 ! otolith @@ -97331,7 +97556,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1268195 xref: MA:0002889 xref: NCIT:C38630 xref: UMLS:C1268195 {source="ncithesaurus:Extremity_Part"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010538 ! paired limb/fin segment intersection_of: UBERON:0010758 ! subdivision of organism along appendicular axis intersection_of: part_of UBERON:0002101 ! limb @@ -97498,6 +97722,7 @@ xref: http://en.wikipedia.org/wiki/Sensillum xref: MAT:0000163 xref: MIAA:0000163 xref: TGMA:0000540 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0001016 ! nervous system @@ -97542,6 +97767,7 @@ xref: TAO:0000026 xref: VHOG:0000078 xref: XAO:0000034 xref: ZFA:0000026 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 {source="GO"} ! gland relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0000922 ! embryo @@ -97608,7 +97834,6 @@ xref: TAO:0000034 xref: VHOG:0001243 xref: XAO:0000095 xref: ZFA:0000034 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001032 ! sensory system relationship: has_part UBERON:0010202 ! lateral line relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -97625,6 +97850,7 @@ xref: MAT:0000255 xref: MIAA:0000255 xref: TAO:0000111 xref: ZFA:0000111 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:40674 ! Mammalia relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -98052,6 +98278,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0149551 xref: http://www.snomedbrowser.com/Codes/Details/369222001 xref: UMLS:C0149551 {source="BIRNLEX:1025"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -98064,6 +98291,7 @@ synonym: "neuraxis cavity" EXACT [FMA:75007] synonym: "neuraxis lumen" EXACT [] xref: BIRNLEX:1029 xref: FMA:75007 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: luminal_space_of UBERON:0001017 ! central nervous system @@ -98235,6 +98463,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228427 xref: http://www.snomedbrowser.com/Codes/Details/361541001 xref: UMLS:C0228427 {source="BIRNLEX:1043"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0002152 ! middle cerebellar peduncle relationship: part_of UBERON:0000988 ! pons @@ -98761,6 +98990,7 @@ xref: MBA:961 xref: Prepyriform:area xref: UMLS:C0228280 {source="BIRNLEX:1097"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0002599 {source="lexical"} ! medial olfactory gyrus relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex @@ -98826,6 +99056,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2394 {source xref: http://linkedlifedata.com/resource/umls/id/C0694580 xref: UMLS:C0694580 {source="BIRNLEX:1102"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -99068,6 +99299,8 @@ xref: MBA:982 xref: UMLS:C0152332 {source="BIRNLEX:1129"} is_a: UBERON:0000064 ! organ part is_a: UBERON:0000200 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! gyrus +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002600 {source="NIFSTD"} ! limbic lobe [Term] @@ -99177,6 +99410,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2395 xref: http://linkedlifedata.com/resource/umls/id/C0694581 xref: UMLS:C0694581 {source="BIRNLEX:1141"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -99620,7 +99854,6 @@ xref: MBA:924 xref: NCIT:C32291 xref: UMLS:C0007793 {source="ncithesaurus:Cerebral_Peduncle"} xref: UMLS:C0007793 {source="BIRNLEX:1202"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007417 {source="FMA"} ! peduncle of neuraxis is_a: UBERON:0016554 ! white matter of midbrain relationship: has_part UBERON:0001943 ! midbrain tegmentum @@ -99760,6 +99993,8 @@ xref: NCIT:C33811 xref: UMLS:C0262350 {source="ncithesaurus:Triangular_Part_of_the_Inferior_Frontal_Gyrus"} xref: UMLS:C0262350 {source="BIRNLEX:1216"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus [Term] @@ -101555,6 +101790,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228192 xref: http://www.snomedbrowser.com/Codes/Details/369229005 xref: Preoccipital:notch xref: UMLS:C0228192 {source="BIRNLEX:1436"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002021 ! occipital lobe @@ -102453,6 +102689,8 @@ xref: PBA:294022158 xref: UMLS:C0175196 {source="BIRNLEX:1508"} xref: UMLS:C0175196 {source="ncithesaurus:Entorhinal_Cortex"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0007613 {source="BTO"} ! memory relationship: part_of UBERON:0002973 {source="FMA"} ! parahippocampal gyrus relationship: part_of UBERON:0004725 {source="BTO"} ! piriform cortex @@ -102705,6 +102943,8 @@ xref: http://en.wikipedia.org/wiki/Isthmus_of_cingulate_gyrus xref: http://linkedlifedata.com/resource/umls/id/C0175192 xref: UMLS:C0175192 {source="BIRNLEX:1541"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002967 ! cingulate gyrus [Term] @@ -102977,6 +103217,7 @@ synonym: "segment of cerebellar cortex" EXACT [BIRNLEX:1571] xref: BIRNLEX:1571 xref: FMA:76924 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0002129 ! cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex @@ -104159,7 +104400,6 @@ xref: MBA:93 xref: TAO:0000650 xref: UMLS:C0228707 {source="BIRNLEX:1717"} xref: ZFA:0000650 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004673 ! trigeminal nerve root relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon @@ -104596,6 +104836,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279777006 xref: UMLS:C0458764 {source="BIRNLEX:2557"} xref: UMLS:C0458765 {source="BIRNLEX:2555"} xref: UMLS:C1184827 {source="BIRNLEX:2523"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: capable_of_part_of GO:0019230 {source="Wikipedia"} ! proprioception relationship: part_of UBERON:0006106 ! cochlear canal @@ -104629,6 +104870,7 @@ xref: FMA:58671 xref: http://linkedlifedata.com/resource/umls/id/C0934637 xref: UMLS:C0934637 {source="BIRNLEX:2542"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea [Term] @@ -104643,6 +104885,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0929757 xref: http://linkedlifedata.com/resource/umls/id/C0929760 xref: UMLS:C0929757 {source="BIRNLEX:2544"} xref: UMLS:C0929760 {source="BIRNLEX:2544"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000466 ! immaterial anatomical entity relationship: part_of UBERON:0001786 ! fovea centralis @@ -104678,6 +104921,7 @@ is_a: UBERON:0001714 ! cranial ganglion is_a: UBERON:0001800 {source="ncithesaurus"} ! sensory ganglion is_a: UBERON:0003338 ! ganglion of peripheral nervous system is_a: UBERON:0006585 ! vestibular organ +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001714 ! cranial ganglion intersection_of: extends_fibers_into UBERON:0003723 ! vestibular nerve relationship: extends_fibers_into UBERON:0003723 ! vestibular nerve @@ -104699,6 +104943,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1186166 xref: MA:0002778 xref: UMLS:C1186166 {source="BIRNLEX:2551"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0002824 ! vestibular ganglion relationship: part_of UBERON:0002824 ! vestibular ganglion @@ -104713,6 +104958,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1186167 xref: MA:0002779 xref: UMLS:C1186167 {source="BIRNLEX:2552"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002824 ! vestibular ganglion [Term] @@ -105561,10 +105807,8 @@ xref: MBA:839 xref: NCIT:C32475 xref: UMLS:C0152401 {source="BIRNLEX:2642"} xref: UMLS:C0926535 {source="ncithesaurus:Dorsal_Nucleus_of_the_Vagus_Nerve"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007635 ! nucleus of medulla oblongata is_a: UBERON:0011778 ! motor nucleus of vagal nerve -relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0010127 ! future dorsal motor nucleus of vagus relationship: immediate_transformation_of UBERON:0010127 {evidence="definitional"} ! future dorsal motor nucleus of vagus relationship: part_of UBERON:0001896 {source="MA", source="NIF"} ! medulla oblongata @@ -105637,12 +105881,9 @@ xref: http://en.wikipedia.org/wiki/Inferior_salivatory_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0175534 xref: MBA:106 xref: UMLS:C0175534 {source="BIRNLEX:2645"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0004133 ! salivatory nucleus is_a: UBERON:0007635 ! nucleus of medulla oblongata -relationship: develops_from UBERON:0001016 ! nervous system -relationship: develops_from UBERON:0001017 ! central nervous system relationship: develops_from UBERON:0010124 ! future inferior salivatory nucleus relationship: extends_fibers_into UBERON:0001649 ! glossopharyngeal nerve relationship: immediate_transformation_of UBERON:0010124 {evidence="definitional"} ! future inferior salivatory nucleus @@ -106235,6 +106476,7 @@ xref: Olfactory:cortex xref: UMLS:C0162434 {source="BIRNLEX:2707"} xref: VHOG:0000325 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe relationship: part_of UBERON:0000956 {source="VHOG"} ! cerebral cortex relationship: part_of UBERON:0005366 {source="MA"} ! olfactory lobe @@ -106256,6 +106498,7 @@ xref: EV:0100179 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2056 xref: MA:0003117 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0002894 {source="NIF"} ! olfactory cortex @@ -106606,6 +106849,7 @@ xref: Parietal:operculum xref: UMLS:C0228265 {source="BIRNLEX:4029"} xref: UMLS:C1284612 {source="BIRNLEX:4029"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -106885,6 +107129,7 @@ xref: Olfactory:trigone xref: UMLS:C0228279 {source="BIRNLEX:4042"} xref: UMLS:C0228279 {source="ncithesaurus:Trigonum_Olfactorium"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005366 {source="BTO-def"} ! olfactory lobe [Term] @@ -107485,6 +107730,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0149547 xref: http://www.snomedbrowser.com/Codes/Details/362352005 xref: UMLS:C0149547 {source="BIRNLEX:751"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010262 ! operculum of brain [Term] @@ -107686,7 +107932,6 @@ xref: MA:0000993 xref: MBA:1143 xref: NCIT:C49138 xref: UMLS:C1708253 {source="ncithesaurus:Granular_Layer_of_the_Cerebellum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004130 ! cerebellar layer intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: in_deep_part_of UBERON:0002129 ! cerebellar cortex @@ -108126,7 +108371,6 @@ xref: NCIT:C49139 xref: UMLS:C0228469 {source="BIRNLEX:810"} xref: UMLS:C1289474 {source="BIRNLEX:810"} xref: UMLS:C1709064 {source="ncithesaurus:Molecular_Layer_of_the_Cerebellum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004130 ! cerebellar layer intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: in_superficial_part_of UBERON:0002129 ! cerebellar cortex @@ -108249,7 +108493,6 @@ xref: NCIT:C49140 xref: UMLS:C0228469 {source="BIRNLEX:818"} xref: UMLS:C1289475 {source="BIRNLEX:818"} xref: UMLS:C1709776 {source="ncithesaurus:Purkinje_Cell_Layer_of_the_Cerebellum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004130 ! cerebellar layer intersection_of: UBERON:0004130 ! cerebellar layer intersection_of: immediately_deep_to UBERON:0002974 ! molecular layer of cerebellar cortex @@ -108282,6 +108525,8 @@ xref: http://en.wikipedia.org/wiki/Opercular_part_of_inferior_frontal_gyrus xref: http://linkedlifedata.com/resource/umls/id/C0262296 xref: UMLS:C0262296 {source="BIRNLEX:823"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002998 {source="FMA"} ! inferior frontal gyrus [Term] @@ -109266,8 +109511,9 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228426 xref: http://www.snomedbrowser.com/Codes/Details/362401009 xref: Pontine:tegmentum xref: UMLS:C0228426 {source="BIRNLEX:923"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0002047 ! pontine raphe nucleus relationship: has_part UBERON:0002128 ! superior olivary complex relationship: has_part UBERON:0002148 ! locus ceruleus @@ -109371,6 +109617,7 @@ xref: NCIT:C52713 xref: UMLS:C0598179 {source="ncithesaurus:Cingulate_Cortex"} xref: UMLS:C0598179 {source="BIRNLEX:934"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016542 {source="NIFSTD", source="cjm"} ! limbic cortex [Term] @@ -109961,6 +110208,7 @@ xref: ZFA:0000051 is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007499 ! epithelial sac +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0007499 ! epithelial sac intersection_of: has_potential_to_develop_into UBERON:0001846 ! internal ear intersection_of: part_of UBERON:0000924 ! ectoderm @@ -109997,6 +110245,7 @@ xref: XAO:0000016 xref: ZFA:0000042 is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 {inconsistent_with="ZFA", source="https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/106/"} ! anatomical junction +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0003075 ! neural plate relationship: develops_from UBERON:0009615 ! midbrain hindbrain boundary neural plate relationship: immediate_transformation_of UBERON:0009615 {source="ZFA"} ! midbrain hindbrain boundary neural plate @@ -110023,6 +110272,7 @@ xref: TAO:0001083 xref: VHOG:0001224 xref: XAO:0000021 xref: ZFA:0001083 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000955 {source="MA"} ! brain relationship: part_of UBERON:0005281 {source="ZFA"} ! ventricular system of central nervous system @@ -110052,8 +110302,8 @@ xref: TAO:0007058 xref: VHOG:0000303 xref: ZFA:0001436 xref: ZFA:0007058 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: composed_primarily_of CL:0000125 ! glial cell relationship: in_dorsal_side_of UBERON:0001049 ! neural tube @@ -110111,6 +110361,7 @@ xref: TAO:0007017 xref: VHOG:0001201 xref: XAO:0000046 xref: ZFA:0007017 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate relationship: posterior_to UBERON:0009615 ! midbrain hindbrain boundary neural plate @@ -110162,7 +110413,6 @@ is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0005423 ! developing anatomical structure intersection_of: has_potential_to_develop_into UBERON:0002329 ! somite intersection_of: immediate_transformation_of UBERON:0007282 ! presumptive segmental plate -relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0007282 ! presumptive segmental plate relationship: has_potential_to_develop_into UBERON:0002329 ! somite relationship: immediate_transformation_of UBERON:0007282 {source="Bgee:AN"} ! presumptive segmental plate @@ -110272,7 +110522,6 @@ is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance relationship: contributes_to_morphology_of UBERON:0004341 ! primitive streak -relationship: develops_from UBERON:0000922 ! embryo relationship: develops_from UBERON:0007283 ! presumptive shield relationship: immediate_transformation_of UBERON:0007283 {source="Bgee:AN"} ! presumptive shield relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -110355,8 +110604,8 @@ xref: TAO:0001289 xref: VHOG:0000088 xref: XAO:0000086 xref: ZFA:0001289 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0002672 ! retinal progenitor cell relationship: part_of UBERON:0000966 ! retina @@ -110607,7 +110856,6 @@ xref: XAO:0000242 xref: ZFA:0000546 is_a: UBERON:0000083 ! mesonephric tubule is_a: UBERON:0009201 {source="GO"} ! nephric duct -is_a: UBERON:0012275 ! meso-epithelium property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/rfoulger relationship: develops_from UBERON:0003060 ! pronephric duct @@ -110743,6 +110991,7 @@ xref: RETIRED_EHDAA2:0000545 xref: TAO:0000022 xref: ZFA:0000022 is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: composed_primarily_of CL:0000125 ! glial cell @@ -110856,7 +111105,7 @@ xref: TAO:0001024 xref: VHOG:0000062 xref: XAO:0000319 xref: ZFA:0001024 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: has_part CL:0000011 {source="ZFA"} ! migratory trunk neural crest cell relationship: part_of UBERON:0002342 ! neural crest @@ -111144,7 +111393,6 @@ xref: TAO:0001173 xref: VSAO:0000165 xref: XAO:0000469 xref: ZFA:0001173 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin intersection_of: has_skeleton UBERON:4000168 ! dorsal fin skeleton @@ -111343,6 +111591,7 @@ synonym: "aorta-gonads-mesonephros region" RELATED [XAO:0003051] synonym: "DLP" EXACT [XAO:0003051] xref: AAO:0011008 xref: XAO:0003051 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0002390 {source="XAO"} ! hematopoietic system @@ -111409,6 +111658,7 @@ xref: AAO:0000596 xref: TAO:0000444 xref: XAO:0003086 xref: ZFA:0000444 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0008895 {source="ZFA"} ! splanchnocranium @@ -111436,6 +111686,7 @@ xref: AAO:0010208 xref: TAO:0000189 xref: XAO:0003175 xref: ZFA:0000189 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -111448,6 +111699,7 @@ xref: AAO:0010207 xref: TAO:0000290 xref: XAO:0003174 xref: ZFA:0000290 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -111464,6 +111716,7 @@ xref: NCIT:C98765 xref: TAO:0000351 xref: XAO:0003172 xref: ZFA:0000351 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium @@ -111808,7 +112061,7 @@ xref: NCIT:C34124 xref: UMLS:C0008503 {source="ncithesaurus:Chorion"} xref: UMLS:C1516505 {source="ncithesaurus:Chorionic_Sac"} xref: VHOG:0000200 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane relationship: adjacent_to UBERON:0000922 ! embryo relationship: develops_from UBERON:0005971 {source="ISBN:0073040584"} ! amniotic fold @@ -111833,6 +112086,7 @@ xref: MESH:A16.631.886 xref: VHOG:0000720 xref: Vitelline:membrane xref: XAO:0000030 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005764 ! acellular membrane relationship: bounding_layer_of CL:0000025 ! egg cell relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -111872,7 +112126,6 @@ xref: UMLS:C0040578 {source="ncithesaurus:Trachea"} xref: Vertebrate:trachea xref: VHOG:0000371 xref: XAO:0000118 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000117 ! respiratory tube relationship: contributes_to_morphology_of UBERON:0001004 ! respiratory system relationship: develops_from UBERON:0008947 {source="EHDAA2"} ! respiratory primordium @@ -112590,6 +112843,7 @@ id: UBERON:0003194 name: imaginal disc-derived wing vein xref: FBbt:00004751 xref: HAO:0001095 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -112714,6 +112968,7 @@ name: blood nerve barrier def: "Barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, http://en.wikipedia.org/wiki/Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] xref: Blood-nerve:barrier +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0001021 ! nerve @@ -112727,6 +112982,7 @@ def: "Barrier in the choroid plexus located in the lateral, third, and fourth br subset: pheno_slim synonym: "blood-CSF barrier" EXACT [MP:0006088] is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0000178 ! blood relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid relationship: only_in_taxon NCBITaxon:7711 ! Chordata @@ -112784,6 +113040,7 @@ xref: EMAPA:36566 xref: FMA:73285 xref: MA:0002760 is_a: UBERON:0003215 ! alveolus +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0001911 ! mammary gland relationship: contributes_to_morphology_of UBERON:0001912 ! lobule of mammary gland @@ -112825,6 +113082,7 @@ xref: MESH:D021362 xref: MIAA:0000161 xref: NCIT:C12230 xref: UMLS:C0226901 {source="ncithesaurus:Hard_Palate"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: part_of UBERON:0001716 {notes="check this", source="EMAPA"} ! secondary palate @@ -112874,6 +113132,7 @@ xref: MA:0000860 xref: UMLS:C0447640 {source="BIRNLEX:941"} xref: VHOG:0001180 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0006250 {source="MP-def"} ! infundibular recess of 3rd ventricle relationship: part_of UBERON:0002198 ! neurohypophysis @@ -112881,6 +113140,7 @@ relationship: part_of UBERON:0002198 ! neurohypophysis id: UBERON:0003218 name: ovary septum def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0000992 ! ovary @@ -112980,7 +113240,6 @@ name: chorion syncytiotrophoblast def: "An extraembryonic structure that develops_from a syncytiotrophoblast and is part of a chorion." [OBOL:automatic] xref: EHDAA2:0001973 xref: EHDAA:156 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000371 ! syncytiotrophoblast @@ -113256,7 +113515,6 @@ xref: FMA:75604 xref: MA:0001204 xref: RETIRED_EHDAA2:0002155 xref: VHOG:0000634 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth @@ -113292,7 +113550,6 @@ xref: FMA:75605 xref: MA:0001202 xref: RETIRED_EHDAA2:0001771 xref: VHOG:0000633 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006932 ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth @@ -113419,6 +113676,7 @@ xref: EMAPA:16197 xref: VHOG:0000636 xref: ZFA:0007068 is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003069 ! otic placode @@ -113468,6 +113726,7 @@ xref: galen:RibCage xref: http://en.wikipedia.org/wiki/Human_rib_cage xref: http://www.snomedbrowser.com/Codes/Details/361741004 xref: Rib:cage +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: contributes_to_morphology_of UBERON:0005944 ! axial skeleton plus cranial skeleton relationship: part_of UBERON:0000915 {notes="check other species", source="FMA"} ! thoracic segment of trunk @@ -113505,10 +113764,10 @@ xref: EHDAA2:0000117 xref: EHDAA:138 xref: EMAPA:16110 xref: VHOG:0000621 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue +is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0002532 {source="EHDAA2-via-amnioblasts", source="ISBN:9780878932504"} ! epiblast (generic) relationship: part_of UBERON:0000305 {source="EHDAA2"} ! amnion @@ -113689,6 +113948,7 @@ xref: NCIT:C49792 xref: UMLS:C1710581 {source="ncithesaurus:Upper_Jaw_Tooth"} is_a: CARO:0000003 is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001709 ! upper jaw region @@ -113718,6 +113978,7 @@ xref: NCIT:C49582 xref: UMLS:C1708757 {source="ncithesaurus:Lower_Jaw_Tooth"} is_a: CARO:0000003 is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001710 ! lower jaw region @@ -113738,6 +113999,7 @@ xref: EHDAA2:0000486 xref: EHDAA:2923 xref: EMAPA:17844 is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000019 ! camera-type eye @@ -113808,6 +114070,7 @@ xref: MA:0001908 xref: VHOG:0000429 xref: XAO:0003087 is_a: CARO:0000003 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0001709 ! upper jaw region @@ -113875,6 +114138,7 @@ synonym: "primary bronchus endothelium" EXACT [OBOL:automatic] synonym: "principal bronchus endothelium" EXACT [OBOL:automatic] xref: EHDAA:3076 xref: RETIRED_EHDAA2:0001046 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0002340 ! epithelium of main bronchus intersection_of: UBERON:0001986 ! endothelium @@ -113970,7 +114234,6 @@ synonym: "foregut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0000560 xref: EHDAA:3830 xref: EMAPA:17178 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0002114 ! duodenum @@ -113982,7 +114245,6 @@ synonym: "midgut duodenum" EXACT [OBOL:automatic] xref: EHDAA2:0001189 xref: EHDAA:3937 xref: EMAPA:17193 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001045 ! midgut relationship: part_of UBERON:0002114 ! duodenum @@ -114144,6 +114406,7 @@ xref: EHDAA:4475 xref: EMAPA:16897 xref: VHOG:0000653 is_a: UBERON:0002530 ! gland +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001894 ! diencephalon relationship: part_of UBERON:0001894 ! diencephalon @@ -114187,6 +114450,7 @@ xref: RETIRED_EHDAA2:0001111 xref: TAO:0000355 xref: VHOG:0000772 xref: ZFA:0000355 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001891 ! midbrain @@ -114208,7 +114472,9 @@ xref: EHDAA2:0001994 xref: EHDAA:3512 xref: EMAPA:16657 xref: VHOG:0000774 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003054 ! roof plate @@ -114246,6 +114512,7 @@ xref: EMAPA:16909 xref: TAO:0001358 xref: VHOG:0000771 xref: ZFA:0001358 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001894 ! diencephalon @@ -114271,7 +114538,9 @@ xref: EHDAA:5524 xref: EMAPA:16483 xref: EMAPA:16487 xref: VHOG:0000770 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003054 ! roof plate @@ -114302,7 +114571,9 @@ synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic] xref: EHDAA2:0001099 xref: EHDAA:7614 xref: VHOG:0000776 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003054 ! roof plate @@ -114349,6 +114620,8 @@ xref: TAO:0001434 xref: VHOG:0000300 xref: ZFA:0001434 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001049 ! neural tube intersection_of: part_of UBERON:0003079 ! floor plate @@ -114403,6 +114676,7 @@ xref: VHOG:0000783 xref: ZFA:0000914 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003306 ! floor plate of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -114469,6 +114743,7 @@ xref: EMAPA:17258 xref: VHOG:0000784 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003306 ! floor plate of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001895 ! metencephalon intersection_of: part_of UBERON:0003079 ! floor plate @@ -114502,6 +114777,7 @@ xref: EMAPA:17551 xref: VHOG:0000786 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0003306 ! floor plate of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001896 ! medulla oblongata intersection_of: part_of UBERON:0003079 ! floor plate @@ -114686,7 +114962,6 @@ xref: EHDAA2:0002124 xref: EHDAA:8031 xref: EMAPA:17929 xref: VHOG:0001099 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009891 ! facial mesenchyme is_a: UBERON:0034995 ! jaw mesenchyme intersection_of: UBERON:0003104 ! mesenchyme @@ -114733,6 +115008,7 @@ xref: EHDAA2:0001469 xref: EHDAA:8981 xref: EMAPA:17591 xref: VHOG:0000747 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001757 ! pinna @@ -114755,6 +115031,7 @@ xref: EHDAA:6528 xref: EMAPA:17761 xref: VHOG:0001087 is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -114808,6 +115085,7 @@ xref: EMAPA:27535 xref: FMA:85399 xref: http://www.snomedbrowser.com/Codes/Details/7892006 is_a: UBERON:0001208 ! submucosa of large intestine +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal @@ -114976,6 +115254,7 @@ xref: EHDAA2:0000227 xref: EMAPA:16658 xref: FMA:83843 is_a: UBERON:0000045 ! ganglion +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001017 ! central nervous system @@ -115035,6 +115314,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362170004 xref: NCIT:C60784 xref: UMLS:C0227414 {source="ncithesaurus:Anal_Mucosa"} is_a: UBERON:0001207 ! mucosa of large intestine +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal @@ -115209,6 +115489,7 @@ synonym: "incisor tooth epithelium" EXACT [OBOL:automatic] xref: EMAPA:32890 xref: MA:0003223 is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001098 ! incisor tooth relationship: part_of UBERON:0001098 ! incisor tooth @@ -115221,6 +115502,7 @@ synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic] synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic] synonym: "nasal septum epithelium" EXACT [OBOL:automatic] xref: EMAPA:18442 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0019306 ! nose epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001706 ! nasal septum @@ -115261,6 +115543,8 @@ synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic] synonym: "soft palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18950 is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0001733 ! soft palate @@ -115415,7 +115699,7 @@ xref: EMAPA:18444 xref: FMA:301283 xref: MA:0001328 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0019306 ! nose epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002255 ! vomeronasal organ @@ -115431,6 +115715,8 @@ synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic] synonym: "hard palate epithelium" EXACT [OBOL:automatic] xref: EMAPA:18953 is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -115519,7 +115805,6 @@ synonym: "chorion epithelium" RELATED [] synonym: "chorionic epithelium" RELATED [BTO:0005145] xref: BTO:0005145 xref: EMAPA:16113 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure intersection_of: UBERON:0000478 ! extraembryonic structure intersection_of: develops_from UBERON:0000924 ! ectoderm @@ -115925,6 +116210,7 @@ xref: FMA:59503 xref: MA:0003138 is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0001706 ! nasal septum relationship: part_of UBERON:0001706 ! nasal septum @@ -115940,6 +116226,7 @@ synonym: "gut gland" EXACT [MA:0003202] synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic] xref: EMAPA:18815 xref: MA:0003202 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 ! gland is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0002530 ! gland @@ -115969,6 +116256,7 @@ synonym: "oral part of pharynx gland" EXACT [OBOL:automatic] synonym: "oropharynx gland" EXACT [OBOL:automatic] xref: EMAPA:25095 is_a: UBERON:0003295 ! pharyngeal gland +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0001729 ! oropharynx @@ -116040,6 +116328,7 @@ synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:17912 is_a: UBERON:0003324 ! mesenchyme of lower jaw is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001684 ! mandible @@ -116052,6 +116341,7 @@ synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18443 xref: FMA:312700 is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001706 ! nasal septum relationship: part_of UBERON:0001706 ! nasal septum @@ -116063,6 +116353,7 @@ def: "Mesenchyme that is part of a developing tongue [Automatically generated de synonym: "tongue mesenchyme" EXACT [EHDAA2:0004614] xref: EHDAA2:0004614 xref: EMAPA:17882 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001723 ! tongue @@ -116075,6 +116366,7 @@ def: "Mesenchyme that is part of a developing soft palate [Automatically generat synonym: "soft palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18951 is_a: UBERON:0003323 ! mesenchyme of upper jaw +is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0001733 ! soft palate @@ -116118,6 +116410,7 @@ synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic] synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18811 xref: VHOG:0001106 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001832 ! sublingual gland @@ -116151,6 +116444,7 @@ xref: EMAPA:35925 xref: http://www.snomedbrowser.com/Codes/Details/368069009 xref: Wharton's:jelly is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002331 ! umbilical cord @@ -116164,6 +116458,7 @@ def: "Mesenchyme that is part of a developing hard palate [Automatically generat synonym: "hard palate mesenchyme" EXACT [OBOL:automatic] xref: EMAPA:18954 is_a: UBERON:0003323 ! mesenchyme of upper jaw +is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -117019,6 +117314,7 @@ xref: MA:0001917 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001834 ! upper lip relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery @@ -117043,6 +117339,7 @@ xref: MA:0001916 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery is_a: UBERON:0009657 ! artery of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001835 ! lower lip relationship: branching_part_of UBERON:0001612 {source="FMA"} ! facial artery @@ -117252,6 +117549,7 @@ xref: MA:0002673 xref: MESH:A06.407.850 xref: NCIT:C38515 xref: UMLS:C1515429 {source="ncithesaurus:Thymic_Lymphoid_Tissue"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001744 ! lymphoid tissue intersection_of: UBERON:0001744 ! lymphoid tissue intersection_of: part_of UBERON:0002370 ! thymus @@ -117284,6 +117582,7 @@ synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic] xref: EMAPA:37793 {source="MA:th"} xref: MA:0001732 is_a: UBERON:0001821 ! sebaceous gland +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005398 ! female reproductive gland intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0000996 ! vagina @@ -117413,6 +117712,7 @@ synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic] xref: EMAPA:37811 {source="MA:th"} xref: MA:0001834 is_a: UBERON:0003490 ! respiratory system reticular lamina +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001967 ! reticular lamina of epithelium intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -117434,6 +117734,8 @@ synonym: "windpipe reticular lamina" EXACT [OBOL:automatic] xref: EMAPA:37554 {source="MA:th"} xref: MA:0001856 is_a: UBERON:0003490 ! respiratory system reticular lamina +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001967 ! reticular lamina of epithelium intersection_of: part_of UBERON:0003126 ! trachea relationship: part_of UBERON:0003126 ! trachea @@ -117534,6 +117836,7 @@ synonym: "cornea blood vessel" EXACT [OBOL:automatic] xref: EMAPA:36611 xref: MA:0001241 is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0000964 ! cornea @@ -117613,6 +117916,7 @@ def: "A blood vessel that is part of a trachea." [OBOL:automatic] synonym: "blood vessel of trachea" EXACT [OBOL:automatic] xref: EMAPA:35874 xref: MA:0001852 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003126 ! trachea @@ -117696,6 +118000,7 @@ synonym: "blood vessel of eyelid" EXACT [OBOL:automatic] xref: EMAPA:37388 {source="MA:th"} xref: MA:0001250 is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001711 ! eyelid relationship: part_of UBERON:0001711 ! eyelid @@ -117725,6 +118030,7 @@ synonym: "blood vessel of lung" EXACT [OBOL:automatic] synonym: "pulmonary vascular element" RELATED [EMAPA:32867] xref: EMAPA:32867 xref: MA:0002457 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel is_a: UBERON:0003834 ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel @@ -117825,6 +118131,7 @@ synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic] synonym: "principal bronchus vascular element" RELATED [EMAPA:16852] xref: EMAPA:16852 xref: MA:0001844 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003504 ! respiratory system blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002182 ! main bronchus @@ -118331,6 +118638,7 @@ name: distal convoluted tubule macula densa def: "A macula densa that is part of a distal convoluted tubule [Automatically generated definition]." [OBOL:automatic] xref: MA:0001668 is_a: UBERON:0002335 ! macula densa +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0001292 ! distal convoluted tubule relationship: part_of UBERON:0001292 {source="MA"} ! distal convoluted tubule @@ -118998,6 +119306,7 @@ synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:37548 {source="MA:th"} xref: MA:0002409 is_a: UBERON:0003570 ! respiratory system connective tissue +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0001558 ! lower respiratory tract @@ -119046,6 +119355,7 @@ synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic] xref: EMAPA:37682 {source="MA:th"} xref: MA:0001864 is_a: UBERON:0003570 ! respiratory system connective tissue +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -119066,6 +119376,7 @@ xref: MA:0001754 xref: NCIT:C49245 xref: UMLS:C1708651 {source="ncithesaurus:Laryngeal_Connective_Tissue"} is_a: UBERON:0003570 ! respiratory system connective tissue +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -119089,8 +119400,8 @@ xref: EMAPA:35537 xref: FMA:74479 xref: FMA:74483 xref: MA:0002897 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001911 ! mammary gland relationship: contributes_to_morphology_of UBERON:0001911 ! mammary gland @@ -119211,7 +119522,6 @@ synonym: "primary bronchus mesenchyme" RELATED [EMAPA:16850] synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EMAPA:37550 {source="MA:th"} xref: MA:0001845 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003592 ! bronchus connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002182 ! main bronchus @@ -119413,6 +119723,7 @@ synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic] synonym: "textus connectivus of tail" EXACT [OBOL:automatic] xref: EMAPA:16749 xref: MA:0000697 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0007812 ! post-anal tail @@ -119443,6 +119754,7 @@ xref: MA:0001819 xref: NCIT:C49256 xref: UMLS:C1708759 {source="ncithesaurus:Lower_Respiratory_Tract_Cartilage"} is_a: UBERON:0003406 ! cartilage of respiratory system +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0007844 ! cartilage element intersection_of: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0001558 ! lower respiratory tract @@ -119611,6 +119923,7 @@ synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic] xref: MA:0002858 is_a: UBERON:0003613 ! cardiovascular system elastic tissue is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart @@ -119679,6 +119992,7 @@ synonym: "vascular elastic tissue" EXACT [MP:0006083] xref: EMAPA:36300 xref: MA:0002856 is_a: UBERON:0003613 ! cardiovascular system elastic tissue +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001981 ! blood vessel @@ -120965,6 +121279,7 @@ xref: FMA:321558 xref: galen:LimbJoint xref: http://www.snomedbrowser.com/Codes/Details/312683002 xref: MA:0000691 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: part_of UBERON:0002101 ! limb @@ -121365,6 +121680,7 @@ xref: MESH:A14.254.900.710 xref: NCIT:C32375 xref: UMLS:C0226993 {source="ncithesaurus:Corona_Dentis"} is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001091 ! calcareous tooth [Term] @@ -121404,6 +121720,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245728004 xref: MESH:A14.254.900.750 is_a: CARO:0000003 is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: attaches_to UBERON:0001091 ! calcareous tooth relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001091 ! calcareous tooth @@ -121418,6 +121735,7 @@ synonym: "tooth apice" RELATED [GAID:1281] xref: FMA:63000 xref: GAID:1281 xref: MESH:A14.254.900.750.700 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000015 ! non-material anatomical boundary relationship: part_of UBERON:0001091 ! calcareous tooth @@ -121503,6 +121821,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/73711005 xref: MESH:D010156 xref: NCIT:C33247 xref: UMLS:C0030213 {source="ncithesaurus:Palatal_Muscle"} +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010959 ! craniocervical muscle is_a: UBERON:0013765 ! digestive system element intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -121549,6 +121868,7 @@ xref: MESH:A01.047.025 xref: NCIT:C12664 xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA xref: UMLS:C0230168 {source="ncithesaurus:Abdominal_Cavity"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000916 ! abdomen @@ -121602,6 +121922,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/288323008 xref: MESH:D020390 xref: NCIT:C94543 xref: UMLS:C0227130 {source="ncithesaurus:Tooth_Socket"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0004103 {source="MESH-modified"} ! alveolar ridge @@ -121645,6 +121966,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362710002 xref: MESH:A01.047.025.600.573 xref: NCIT:C33209 xref: UMLS:C0028977 {source="ncithesaurus:Omentum"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001178 ! visceral peritoneum @@ -121666,6 +121988,7 @@ xref: NCIT:C12497 xref: Sella:turcica xref: UMLS:C0036609 {source="ncithesaurus:Sella_Turcica"} is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0009639 {source="FMA"} ! body of sphenoid [Term] @@ -121767,6 +122090,7 @@ xref: MESH:A01.047.025.750 xref: NCIT:C12298 xref: Retroperitoneal:space xref: UMLS:C0035359 {source="ncithesaurus:Retroperitoneum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003684 ! abdominal cavity @@ -121791,6 +122115,7 @@ xref: MESH:D001268 xref: NCIT:C32157 xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA xref: UMLS:C0004168 {source="ncithesaurus:Atlanto-axial_Joint"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0001092 ! vertebral bone 1 @@ -121941,6 +122266,7 @@ xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA xref: Pubic:symphysis xref: UMLS:C0034015 {source="ncithesaurus:Pubic_Symphisis"} is_a: UBERON:0002216 {source="FMA"} ! symphysis +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0008114 ! joint of girdle relationship: connects UBERON:0011090 ! skeleton of right pelvic girdle relationship: connects UBERON:0011091 ! skeleton of left pelvic girdle @@ -122121,6 +122447,7 @@ xref: MESH:D014827 xref: NCIT:C12822 xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA xref: UMLS:C0042930 {source="ncithesaurus:Vocal_Cord"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034681 ! vocal organ relationship: capable_of_part_of GO:0071625 ! vocalization behavior relationship: in_lateral_side_of UBERON:0002486 {source="FMA-abduced-lr"} ! glottis @@ -122151,6 +122478,7 @@ xref: MESH:D012850 xref: NCIT:C33557 xref: UMLS:C0503361 {source="ncithesaurus:Sinus_of_Valsava"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0010172 ! bulb of aorta relationship: part_of UBERON:0010172 {source="FMA", source="MP"} ! bulb of aorta @@ -122189,6 +122517,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362047009 xref: MESH:D002941 xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest [Term] id: UBERON:0003710 @@ -122348,7 +122677,6 @@ xref: http://en.wikipedia.org/wiki/Recurrent_laryngeal_nerve xref: http://www.snomedbrowser.com/Codes/Details/24227007 xref: MESH:D012009 xref: VHOG:0001347 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: branching_part_of UBERON:0001759 ! vagus nerve @@ -122372,6 +122700,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/12945004 xref: MESH:A08.800.550.700.500.500 xref: NCIT:C13824 xref: UMLS:C0027871 {source="ncithesaurus:Muscle_Spindle"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system @@ -122609,6 +122938,7 @@ xref: MESH:A01.911.800.500 xref: NCIT:C12748 xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA xref: UMLS:C0025066 {source="ncithesaurus:Mediastinum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002224 ! thoracic cavity relationship: surrounded_by UBERON:0035431 {source="FMA"} ! mediastinal pleura @@ -122641,6 +122971,7 @@ xref: MESH:D009061 xref: NCIT:C77637 xref: Oral:mucosa xref: UMLS:C0026639 {source="ncithesaurus:Oral_Mucosa"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000165 ! mouth @@ -122877,6 +123208,7 @@ def: "Any muscle tissue that is part of the urethra." [UBERON:cjm] synonym: "urethral muscle layer" RELATED [MA:0002649] xref: EMAPA:37787 {source="MA:th"} xref: MA:0002649 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005090 ! muscle structure intersection_of: UBERON:0005090 ! muscle structure intersection_of: part_of UBERON:0000057 ! urethra @@ -123131,6 +123463,7 @@ xref: EHDAA:914 xref: EMAPA:16167 xref: VHOG:0001119 xref: XAO:0000252 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001049 ! neural tube @@ -123158,8 +123491,8 @@ xref: UMLS:C1709309 {source="ncithesaurus:Odontogenic_Epithelial_Remnants"} xref: VHOG:0001443 xref: XAO:0003203 xref: ZFA:0005134 -is_a: UBERON:0000483 ! epithelium is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005176 ! tooth enamel organ relationship: develops_from UBERON:0004362 {notes="epithelium", source="JB"} ! pharyngeal arch 1 @@ -123227,8 +123560,9 @@ xref: NCIT:C45713 xref: UMLS:C1711423 {source="ncithesaurus:Thymic_Epithelial_Tissue"} xref: VHOG:0001426 xref: ZFA:0005779 -is_a: CARO:0000000 ! anatomical entity -is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure +is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002370 ! thymus relationship: contributes_to_morphology_of UBERON:0002370 ! thymus @@ -123395,6 +123729,7 @@ xref: EHDAA:5012 xref: EMAPA:16858 xref: EMAPA:17385 xref: VHOG:0001090 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003104 ! mesenchyme @@ -123765,6 +124100,7 @@ xref: EMAPA:32772 xref: FMA:74041 xref: MA:0002428 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0007688 ! anlage relationship: contributes_to_morphology_of UBERON:0001954 ! Ammon's horn relationship: part_of UBERON:0002421 ! hippocampal formation @@ -124019,7 +124355,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/362843009 xref: NCIT:C34165 xref: UMLS:C1517055 {source="ncithesaurus:Extraembryonic_Coelom"} xref: VHOG:0001671 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012466 ! extraembryonic cavity relationship: develops_from UBERON:0003886 ! future coelemic cavity lumen relationship: part_of UBERON:0016887 ! entire extraembryonic component @@ -124287,16 +124622,13 @@ xref: UMLS:C1518263 {source="ncithesaurus:Neural_Retina"} xref: VHOG:0000535 xref: XAO:0003216 xref: ZFA:0000046 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0001781 ! layer of retina intersection_of: UBERON:0001781 ! layer of retina intersection_of: immediate_transformation_of UBERON:0005425 ! presumptive neural retina relationship: developmentally_induced_by UBERON:0005426 ! lens vesicle relationship: develops_from NCBITaxon:6072 ! Eumetazoa -relationship: develops_from UBERON:0003072 ! optic cup relationship: develops_from UBERON:0005425 ! presumptive neural retina -relationship: develops_from UBERON:0010312 ! immature eye relationship: has_part CL:0000210 ! photoreceptor cell relationship: has_part CL:0000540 ! neuron relationship: immediate_transformation_of UBERON:0005425 {source="Bgee:AN"} ! presumptive neural retina @@ -124325,6 +124657,7 @@ def: "Follicle containing part of bursa of Fabricius. The luminal (interior) sur synonym: "bursal fold" EXACT [] synonym: "bursal plicae" EXACT PLURAL [] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003903 ! bursa of Fabricius [Term] @@ -124332,6 +124665,7 @@ id: UBERON:0003905 name: bursal follicle def: "Follicle within the plicae of bursa of Fabricius." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003904 ! bursal plica [Term] @@ -124366,6 +124700,7 @@ xref: VHOG:0000936 xref: XAO:0004120 xref: ZFA:0001318 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: adjacent_to UBERON:0002165 ! endocardium relationship: adjacent_to UBERON:0002349 ! myocardium relationship: part_of UBERON:0000948 ! heart @@ -124749,6 +125084,7 @@ xref: TAO:0005123 xref: UMLS:C0836205 {source="ncithesaurus:Gut_Epithelium"} xref: XAO:0003200 xref: ZFA:0005123 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001555 ! digestive tract @@ -124831,6 +125167,7 @@ synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic] xref: EFO:0003604 xref: TAO:0001000 xref: ZFA:0001000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000151 ! pectoral fin @@ -124845,6 +125182,7 @@ synonym: "mesenchyme pelvic fins" RELATED PLURAL [ZFA:0001449] synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic] xref: TAO:0001449 xref: ZFA:0001449 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000152 ! pelvic fin @@ -124889,7 +125227,9 @@ id: UBERON:0003938 name: sensory dissociation area def: "The area of the parietal lobe that integrates tactile and visual stimuli." [MP:0000796] subset: pheno_slim +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001872 ! parietal lobe @@ -124982,6 +125322,7 @@ name: somatic motor system def: "The neural tissue involved in the transmission of motor signals." [MP:0001051] subset: pheno_slim xref: EMAPA:37953 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000012 ! somatic nervous system @@ -124993,6 +125334,7 @@ subset: pheno_slim synonym: "labyrinthine layer" EXACT [GO:0060713] synonym: "labyrinthine layer of placenta" EXACT [GO:0060713] synonym: "placental labyrinth" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: contributes_to_morphology_of UBERON:0001987 ! placenta relationship: part_of UBERON:0001987 ! placenta @@ -125016,6 +125358,7 @@ def: "The membrane between the capillary blood and alveolar air, comprised of th subset: pheno_slim xref: MESH:D015824 is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004119 ! endoderm-derived structure relationship: adjacent_to UBERON:0000178 ! blood relationship: part_of UBERON:0002048 ! lung @@ -125040,6 +125383,7 @@ name: inner ear canal def: "The tubular ducts of the inner ear." [MP:0002729] subset: pheno_slim xref: EMAPA:37882 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0001846 ! internal ear @@ -125064,6 +125408,7 @@ xref: NCIT:C13378 xref: RETIRED_EHDAA2:0000583 xref: UMLS:C0740422 {source="ncithesaurus:Fundus"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001802 ! posterior segment of eyeball relationship: part_of UBERON:0001802 ! posterior segment of eyeball @@ -125076,6 +125421,7 @@ synonym: "anterior stroma" BROAD [MP:0003093] synonym: "cornea anterior stroma" EXACT [MP:0003093] xref: EMAPA:37414 {source="MA:th"} is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: in_anterior_side_of UBERON:0001777 ! substantia propria of cornea disjoint_from: UBERON:0003953 {source="lexical"} ! posterior stroma of cornea @@ -125092,6 +125438,7 @@ synonym: "cornea posterior stroma" EXACT [MP:0003094] synonym: "posterior stroma" BROAD [MP:0003094] xref: EMAPA:37415 {source="MA:th"} is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0002384 ! connective tissue intersection_of: in_posterior_side_of UBERON:0001777 ! substantia propria of cornea relationship: contributes_to_morphology_of UBERON:0001777 ! substantia propria of cornea @@ -125146,6 +125493,7 @@ def: "The structures associated with drainage of the aqueous humor from the eye, subset: pheno_slim xref: EMAPA:37427 {source="MA:th"} is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001768 ! uvea [Term] @@ -125169,6 +125517,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/280652000 xref: MESH:D016570 xref: ZFA:0005562 is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: adjacent_to UBERON:0001782 ! pigmented layer of retina property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/gkoutos @@ -125228,6 +125577,7 @@ xref: EMAPA:36320 xref: FMA:52877 xref: http://en.wikipedia.org/wiki/Temporal_styloid_process xref: http://www.snomedbrowser.com/Codes/Details/138874009 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone @@ -125346,7 +125696,9 @@ def: "Investing bone that lies on the surface of the malleus." [MP:0008380] subset: pheno_slim synonym: "gonium" EXACT [MP:0008380] xref: EMAPA:37874 {source="MA:th"} +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003457 ! head bone +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001686 ! auditory ossicle bone relationship: part_of UBERON:0001689 ! malleus bone @@ -125359,6 +125711,7 @@ synonym: "cutaneous elastic fiber" NARROW [MP:0008418] synonym: "dermal elastic fiber" NARROW [MP:0008418] xref: EMAPA:37841 {source="MA:th"} is_a: UBERON:0002521 ! elastic tissue +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000014 ! zone of skin relationship: contributes_to_morphology_of UBERON:0000014 ! zone of skin @@ -125382,6 +125735,7 @@ subset: pheno_slim synonym: "placental labyrinth vascular network" EXACT [] synonym: "placental vasculature" RELATED [OBOL:automatic] synonym: "vasculature of placenta labyrinth" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0003946 ! placenta labyrinth @@ -125400,6 +125754,7 @@ id: UBERON:0003972 name: placenta junctional zone def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth." [MP:0008957] subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001987 ! placenta @@ -125475,6 +125830,7 @@ xref: EMAPA:37982 {source="MA:th"} xref: FMA:77825 xref: http://www.snomedbrowser.com/Codes/Details/279829002 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connects UBERON:0001854 ! saccule of membranous labyrinth relationship: connects UBERON:0001860 ! endolymphatic duct relationship: part_of UBERON:0011774 ! utriculosaccular duct @@ -125490,6 +125846,7 @@ xref: EMAPA:37981 {source="MA:th"} xref: FMA:77824 xref: http://www.snomedbrowser.com/Codes/Details/279819009 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connects UBERON:0001853 ! utricle of membranous labyrinth relationship: connects UBERON:0001860 ! endolymphatic duct relationship: part_of UBERON:0011774 ! utriculosaccular duct @@ -125514,6 +125871,7 @@ name: utricle valve def: "The utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals." [MP:0009261] subset: pheno_slim is_a: UBERON:0003978 ! valve +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001853 ! utricle of membranous labyrinth relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth @@ -125644,6 +126002,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/34223001 xref: MA:0000772 xref: NCIT:C13170 xref: UMLS:C0229950 {source="ncithesaurus:Hassall_s_Corpuscle"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0034922 ! cell cluster relationship: composed_primarily_of CL:0000066 ! epithelial cell relationship: contributes_to_morphology_of UBERON:0002124 ! medulla of thymus @@ -125665,7 +126024,7 @@ synonym: "thymus cortico-medullary boundary" EXACT [MP:0009543] synonym: "thymus corticomedullary junction" EXACT [MP:0009543] synonym: "thymus corticomedullary zone" EXACT [MP:0009543] xref: EMAPA:37974 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: contributes_to_morphology_of UBERON:0002125 ! thymus lobule relationship: has_part CL:0000451 ! dendritic cell @@ -125777,6 +126136,8 @@ xref: MBA:124 xref: NCIT:C32627 xref: UMLS:C0016520 {source="ncithesaurus:Foramen_of_Monroe"} is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0013152 ! interventricular foramen of heart relationship: channel_for UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0005281 ! ventricular system of central nervous system @@ -125802,6 +126163,7 @@ synonym: "fossa subarcuata" EXACT LATIN [FMA:56418, FMA:TA] xref: EMAPA:37967 {source="MA:th"} xref: FMA:56418 xref: Subarcuate:fossa +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: contributes_to_morphology_of UBERON:0001678 ! temporal bone relationship: part_of UBERON:0001694 ! petrous part of temporal bone @@ -125858,7 +126220,6 @@ xref: Greater:cornu xref: http://www.snomedbrowser.com/Codes/Details/369008008 xref: MA:0002959 is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: contributes_to_morphology_of UBERON:0001685 ! hyoid bone relationship: develops_from UBERON:0003114 {source="Wikipedia"} ! pharyngeal arch 3 @@ -125887,6 +126248,7 @@ xref: FMA:59499 xref: http://www.snomedbrowser.com/Codes/Details/369007003 xref: Lesser:cornu xref: MA:0002960 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010273 {source="FMA"} ! zone of hyoid bone is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015212 ! lateral structure @@ -125923,6 +126285,7 @@ synonym: "acinus of tarsal gland" EXACT [] synonym: "Meibomian gland acinus" EXACT [] synonym: "palpebral gland acinus" RELATED [] xref: EMAPA:37972 {source="MA:th"} +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011846 ! acinus of sebaceous gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001818 ! tarsal gland @@ -126034,9 +126397,10 @@ synonym: "cerebellum roof plate" RELATED [EHDAA2:0004401] xref: DHBA:12698 xref: EHDAA2:0004401 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1373 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium relationship: develops_from UBERON:0005568 {source="EHDAA2"} ! rhombomere 1 roof plate relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002037 {source="EHDAA2"} ! cerebellum @@ -126178,6 +126542,7 @@ synonym: "periocular mesenchyme" RELATED [XAO:0004089] xref: XAO:0004089 xref: ZFA:0005572 is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_developmental_contribution_from UBERON:0003849 {evidence="PMID:3709965"} ! mesencephalic neural crest relationship: part_of UBERON:0010312 ! immature eye @@ -126219,8 +126584,8 @@ synonym: "spongiotrophoblast" BROAD [] synonym: "spongiotrophoblast layer of placenta" EXACT [] xref: BTO:0005402 xref: EMAPA:31876 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005292 ! extraembryonic tissue relationship: composed_primarily_of CL:0002499 ! spongiotrophoblast cell @@ -126237,6 +126602,7 @@ synonym: "germinal neuroepithelial layer" EXACT [http://orcid.org/0000-0002-6601 synonym: "germinal neuroepithelium" EXACT [NCBIBook:NBK10047] synonym: "original neural tube" EXACT [NCBIBook:NBK10047] is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034706 {source="NCBIBook:NBK10047"} ! proliferating neuroepithelium disjoint_from: UBERON:0006934 ! sensory epithelium relationship: adjacent_to UBERON:0003842 ! neural tube lumen @@ -126261,6 +126627,7 @@ xref: DHBA:10549 xref: EMAPA:32665 xref: Ganglionic:eminence xref: PBA:128012818 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001016 ! nervous system @@ -126274,6 +126641,7 @@ synonym: "MGE" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: DHBA:10550 xref: EMAPA:37471 {source="MA:th"} xref: PBA:128012834 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure disjoint_from: UBERON:0004025 {source="lexical"} ! lateral ganglionic eminence relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence @@ -126288,6 +126656,7 @@ synonym: "LGE" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: DHBA:10551 xref: EMAPA:37470 {source="MA:th"} xref: PBA:128012822 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence relationship: part_of UBERON:0004023 ! ganglionic eminence @@ -126303,6 +126672,7 @@ xref: DHBA:10552 xref: EFO:0001911 xref: EMAPA:37469 {source="MA:th"} xref: PBA:128012846 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: contributes_to_morphology_of UBERON:0004023 ! ganglionic eminence relationship: part_of UBERON:0004023 ! ganglionic eminence @@ -126318,6 +126688,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230972 xref: http://www.snomedbrowser.com/Codes/Details/256391000 xref: NCIT:C34123 xref: UMLS:C0230972 {source="ncithesaurus:Chorionic_Plate"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005292 ! extraembryonic tissue relationship: contributes_to_morphology_of UBERON:0003124 ! chorion membrane relationship: part_of UBERON:0003124 ! chorion membrane @@ -126340,6 +126711,7 @@ xref: NCIT:C32256 xref: Schlemm's:canal xref: UMLS:C0229108 {source="ncithesaurus:Canal_of_Schlemm"} is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: part_of UBERON:0003956 ! aqueous drainage system @@ -126354,6 +126726,7 @@ comment: a mixture of episcleral venous blood and aqueous humor mix in this comb subset: pheno_slim xref: EMAPA:37428 {source="MA:th"} is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: channel_for UBERON:0001796 ! aqueous humor of eyeball relationship: channel_for UBERON:0013756 ! venous blood @@ -126392,6 +126765,7 @@ name: cutaneous microfibril def: "The fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin." [MP:0008419] subset: pheno_slim is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0003967 ! cutaneous elastic tissue relationship: part_of UBERON:0003967 ! cutaneous elastic tissue @@ -126410,7 +126784,6 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3233 xref: http://en.wikipedia.org/wiki/Subplate xref: https://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png/360px-Corticogenesis_in_a_wild-type_mouse_with_captions_in_english_copy.png xref: PBA:294021932 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex intersection_of: UBERON:0014950 ! layer of developing cerebral cortex intersection_of: adjacent_to UBERON:0004040 ! cortical intermediate zone @@ -126458,7 +126831,6 @@ synonym: "cortical mantle layer" RELATED [] synonym: "IZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] xref: EMAPA:17545 xref: EMAPA:32712 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004061 ! neural tube mantle layer relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia @@ -126504,6 +126876,7 @@ xref: EMAPA:32831 xref: http://www.snomedbrowser.com/Codes/Details/279759001 xref: MA:0002770 xref: Osseous:ampullae +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001856 {source="MA"} ! semicircular duct @@ -126740,6 +127113,7 @@ xref: EMAPA:37440 {source="MA:th"} xref: TAO:0005164 xref: ZFA:0005164 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004119 ! endoderm-derived structure relationship: adjacent_to UBERON:0001175 ! common hepatic duct relationship: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002394 {source="BTO"} ! bile duct @@ -126785,8 +127159,8 @@ synonym: "neural tube intermediate zone" EXACT [http://www.ncbi.nlm.nih.gov/book xref: EMAPA:17148 xref: EMAPA:35360 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1367 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0034707 {source="NCBIBook:NBK10047"} ! differentiating neuroepithelium relationship: adjacent_to UBERON:0004060 ! neural tube ventricular layer relationship: adjacent_to UBERON:0004062 ! neural tube marginal layer @@ -126844,6 +127218,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1511061 xref: NCIT:C34111 xref: UMLS:C1511061 {source="ncithesaurus:Basal_Plate"} is_a: CARO:0000003 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: contributes_to_morphology_of UBERON:0004061 ! neural tube mantle layer relationship: developmentally_induced_by UBERON:0002328 {gene="Shh", source="Swenson"} ! notochord @@ -126941,6 +127316,7 @@ xref: MBA:151 xref: NLX:53 xref: NLXANAT:20090453 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0005366 ! olfactory lobe relationship: extends_fibers_into UBERON:0009121 {source="ISBN:0471888893"} ! vomeronasal nerve relationship: part_of RO:0002577 ! system @@ -127290,6 +127666,7 @@ xref: MA:0002844 xref: NCIT:C12306 xref: UMLS:C0227760 {source="ncithesaurus:Labium_Majus"} is_a: UBERON:0004084 ! genital labium +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0011755 {notes="posterior labial commissure", source="Wikipedia"} ! female labial swelling [Term] @@ -127438,6 +127815,7 @@ is_obsolete: true id: UBERON:0004098 name: tibial plateaux subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000979 ! tibia @@ -127448,6 +127826,7 @@ def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a c subset: pheno_slim synonym: "synovial cavity of elbow joint" EXACT [FMA:38911] xref: FMA:38911 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001490 ! elbow joint @@ -127465,6 +127844,7 @@ synonym: "tubulus renalis colligens" RELATED LATIN [http://en.wikipedia.org/wiki xref: FMA:265239 xref: http://en.wikipedia.org/wiki/Collecting_duct_system xref: http://www.snomedbrowser.com/Codes/Details/279371005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002113 ! kidney @@ -127473,6 +127853,7 @@ id: UBERON:0004101 name: nasolabial region subset: pheno_slim is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! nose [Term] @@ -127497,7 +127878,7 @@ xref: MESH:D000539 xref: NCIT:C89749 xref: UMLS:C0447411 {source="ncithesaurus:Alveolar_Ridge"} is_a: UBERON:0005913 ! zone of bone organ -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010313 ! neural crest-derived structure relationship: has_developmental_contribution_from UBERON:0008969 {source="http://www.ncbi.nlm.nih.gov/pubmed/19767574", source="Wikipedia"} ! dental follicle relationship: part_of UBERON:0001708 ! jaw skeleton @@ -127522,6 +127903,7 @@ name: subungual region def: "Region beneath a nail or claw." [https://orcid.org/0000-0002-6601-2165] subset: pheno_slim xref: CALOHA:TS-2351 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001705 ! nail @@ -127576,6 +127958,7 @@ synonym: "humerus compact bone" EXACT [] synonym: "humerus cortical bone" EXACT [] xref: FMA:31542 is_a: UBERON:0001439 ! compact bone tissue +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004269 ! upper arm connective tissue is_a: UBERON:0005808 ! bone tissue of long bone intersection_of: UBERON:0001439 ! compact bone tissue @@ -127588,6 +127971,7 @@ name: midnasal cavity def: "An anatomical cavity that is the combination of the cavity between the nares and the choanae[HP,modified]." [HP:0010641] subset: pheno_slim xref: FMA:59675 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: adjacent_to UBERON:0004771 ! posterior nasal aperture relationship: adjacent_to UBERON:0005928 ! external naris @@ -128172,6 +128556,7 @@ xref: MA:0000100 xref: VHOG:0000670 xref: XAO:0004139 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: channel_for UBERON:0000178 ! blood relationship: channels_from UBERON:0000948 ! heart relationship: channels_into UBERON:0001637 ! artery @@ -128365,6 +128750,7 @@ id: UBERON:0004162 name: pulmonary myocardium def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein." [GO:0003350] is_a: UBERON:0002036 ! striated muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002016 ! pulmonary vein relationship: part_of UBERON:0002349 ! myocardium @@ -128582,7 +128968,7 @@ def: "A saclike structure of the prostate gland, comprised of at least three cel synonym: "prostatic acinus" EXACT [FMA:66808] synonym: "prostatic follicle" EXACT [FMA:66808] xref: FMA:66808 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0009842 {source="FMA"} ! glandular acinus relationship: develops_from UBERON:0009843 {source="http://www.ncbi.nlm.nih.gov/pubmed/18977204"} ! prostate epithelial cord @@ -128670,6 +129056,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1521760 xref: MA:0002912 xref: NCIT:C13104 xref: UMLS:C1521760 {source="ncithesaurus:Prostatic_Stroma"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003891 ! stroma is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003891 ! stroma @@ -128733,6 +129120,7 @@ xref: NCIT:C77619 xref: UMLS:C0018597 {source="ncithesaurus:Harderian_Gland"} is_a: CARO:0000003 is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015153 ! medial gland of ocular region intersection_of: UBERON:0015153 ! medial gland of ocular region @@ -128765,6 +129153,7 @@ xref: BTO:0001515 xref: EMAPA:35458 xref: MA:0002847 is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000074 ! renal glomerulus relationship: part_of UBERON:0000074 ! renal glomerulus @@ -128847,6 +129236,7 @@ synonym: "S1 portion of tubule" EXACT [] synonym: "segment 1 of proximal tubule" EXACT [EMAPA:29657] xref: EMAPA:29657 xref: MA:0002612 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006555 ! excretory tube relationship: capable_of_part_of GO:0070295 {source="GO"} ! renal water absorption relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule @@ -128863,6 +129253,7 @@ synonym: "S2 portion of tubule" EXACT [] synonym: "segment 2 of proximal tubule" EXACT [EMAPA:29659] xref: EMAPA:29659 xref: MA:0002613 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006555 ! excretory tube relationship: capable_of_part_of GO:0070295 {source="GO"} ! renal water absorption relationship: part_of UBERON:0001287 {source="GO"} ! proximal convoluted tubule @@ -128923,6 +129314,7 @@ xref: NCIT:C33436 xref: Renal:pyramids xref: UMLS:C0227629 {source="ncithesaurus:Renal_Pyramid"} xref: UMLS:C1514613 {source="ncithesaurus:Pyramid_of_Malpighi"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part disjoint_from: UBERON:0005159 ! pyramid of medulla oblongata relationship: contributes_to_morphology_of UBERON:0000362 ! renal medulla @@ -128943,6 +129335,7 @@ synonym: "stria interna medullae renalis" EXACT LATIN [FMA:76663, FMA:TA] xref: EMAPA:29675 xref: FMA:76663 xref: MA:0002626 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0001293 ! outer medulla of kidney @@ -128961,6 +129354,7 @@ synonym: "stria externa medullae renalis" EXACT LATIN [FMA:76662, FMA:TA] xref: EMAPA:29663 xref: FMA:76662 xref: MA:0002629 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: contributes_to_morphology_of UBERON:0001293 ! outer medulla of kidney relationship: part_of UBERON:0001293 ! outer medulla of kidney @@ -128975,6 +129369,7 @@ synonym: "renal cortex collecting duct" RELATED [MA:0002600] xref: BTO:0002643 xref: EMAPA:28130 xref: MA:0002600 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: part_of UBERON:0001225 ! cortex of kidney @@ -129016,6 +129411,7 @@ relationship: part_of UBERON:0001294 ! inner medulla of kidney id: UBERON:0004206 name: long descending thin limb bend def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment." [GO:0072065] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001289 ! descending limb of loop of Henle @@ -129024,6 +129420,7 @@ id: UBERON:0004207 name: prebend segment of loop of Henle def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption." [GO:0072066] synonym: "prebend segment" RELATED [GO:0072066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006555 ! excretory tube relationship: part_of UBERON:0001289 ! descending limb of loop of Henle relationship: part_of UBERON:0005096 {source="GO"} ! descending thin limb @@ -129578,6 +129975,7 @@ synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic] synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic] xref: EMAPA:35520 xref: MA:0002410 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0004225 ! respiratory system smooth muscle intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract @@ -129613,6 +130011,7 @@ synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic] xref: EMAPA:37669 {source="MA:th"} xref: MA:0000795 is_a: UBERON:0001135 ! smooth muscle tissue +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -129732,6 +130131,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1708179 xref: MA:0001635 xref: NCIT:C49483 xref: UMLS:C1708179 {source="ncithesaurus:Gallbladder_Smooth_Muscle_Tissue"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0002110 ! gall bladder @@ -130348,6 +130748,7 @@ synonym: "pericardium of outflow tract" EXACT [OBOL:automatic] xref: EMAPA:37707 {source="MA:th"} xref: MA:0000491 is_a: UBERON:0002407 ! pericardium +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002407 ! pericardium intersection_of: part_of UBERON:0004145 ! outflow tract relationship: part_of UBERON:0004145 ! outflow tract @@ -130467,6 +130868,7 @@ xref: MA:0000984 xref: NCIT:C49230 xref: UMLS:C1707392 {source="ncithesaurus:Choroid_Plexus_Epithelium_of_the_Fourth_Ventricle"} is_a: UBERON:0003911 ! choroid plexus epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003911 ! choroid plexus epithelium intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle @@ -130596,7 +130998,6 @@ xref: EMAPA:17271 xref: http://www.snomedbrowser.com/Codes/Details/276146002 xref: MA:0000224 xref: VHOG:0000641 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system @@ -131575,6 +131976,7 @@ xref: NCIT:C81188 xref: UMLS:C0205950 {source="ncithesaurus:Skullcap"} xref: VHOG:0000331 xref: ZFA:0005606 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: contributes_to_morphology_of UBERON:0003128 ! cranium relationship: part_of UBERON:0001703 ! neurocranium @@ -131597,7 +131999,6 @@ xref: NCIT:C34101 xref: RETIRED_EHDAA2:0000114 xref: UMLS:C0002084 {source="ncithesaurus:Allantois"} xref: VHOG:0000738 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005631 ! extraembryonic membrane relationship: develops_from UBERON:0000162 {source="Hymans"} ! cloaca relationship: has_developmental_contribution_from UBERON:0000925 {notes="hindgut diverticulum endoderm", source="ISBN:0073040584"} ! endoderm @@ -131663,7 +132064,6 @@ xref: EHDAA2:0002091 xref: EHDAA:56 xref: EMAPA:16046 xref: VHOG:0000979 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005292 ! extraembryonic tissue relationship: develops_from UBERON:0000085 {source="EHDAA2"} ! morula @@ -131793,6 +132193,7 @@ xref: TAO:0002146 xref: UMLS:C1516037 {source="ncithesaurus:Apical_Ectodermal_Ridge"} xref: XAO:0004121 xref: ZFA:0001702 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0002050 ! embryonic structure relationship: capable_of GO:0010464 ! regulation of mesenchymal cell proliferation @@ -131840,6 +132241,7 @@ xref: MA:0002762 xref: NCIT:C32717 xref: UMLS:C0228023 {source="ncithesaurus:Head_of_the_Epididymis"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis @@ -131863,6 +132265,7 @@ xref: MA:0002764 xref: NCIT:C32217 xref: UMLS:C0228022 {source="ncithesaurus:Body_of_the_Epididymis"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis @@ -131888,6 +132291,7 @@ xref: MA:0002763 xref: NCIT:C33732 xref: UMLS:C0228024 {source="ncithesaurus:Tail_of_the_Epididymis"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001301 ! epididymis @@ -131903,6 +132307,7 @@ xref: FMA:72308 xref: http://www.snomedbrowser.com/Codes/Details/66275001 xref: MA:0002957 xref: Stylohyoid:ligament +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0008846 {source="FMA"} ! skeletal ligament is_a: UBERON:0010313 ! neural crest-derived structure relationship: connects UBERON:0003960 {source="Wikipedia"} ! styloid process of temporal bone @@ -132001,6 +132406,7 @@ synonym: "epamniotic cone" EXACT [] synonym: "placenta - ectoplacental cone" EXACT [] xref: BTO:0001715 xref: EMAPA:16059 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000088 ! trophoblast relationship: part_of UBERON:0000922 ! embryo @@ -132023,7 +132429,6 @@ name: extraembryonic ectoderm def: "Layer of the endoderm of the extraembryonic tissue." [MP:0002583] subset: pheno_slim xref: EMAPA:16065 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from UBERON:0000924 ! ectoderm @@ -132054,6 +132459,7 @@ xref: TAO:0002157 xref: UMLS:C0011665 {source="ncithesaurus:Descemet_s_Membrane"} xref: ZFA:0001686 is_a: UBERON:0005769 ! basement membrane of epithelium +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: adjacent_to UBERON:0001777 ! substantia propria of cornea intersection_of: adjacent_to UBERON:0001985 ! corneal endothelium @@ -132081,6 +132487,7 @@ xref: EHDAA2:0000793 xref: EMAPA:17622 xref: FMA:295800 is_a: UBERON:0003406 ! cartilage of respiratory system +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: develops_from UBERON:0010354 ! Reichert's cartilage pre-cartilage condensation @@ -132129,6 +132536,7 @@ xref: UMLS:C0229127 {source="ncithesaurus:Bowman_s_Membrane"} xref: ZFA:0001684 is_a: CARO:0000003 is_a: UBERON:0005769 ! basement membrane of epithelium +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: attaches_to UBERON:0001772 ! corneal epithelium intersection_of: part_of UBERON:0000964 ! cornea @@ -132251,6 +132659,7 @@ synonym: "humeral epiphysis" EXACT [OBOL:automatic] xref: FMA:32825 xref: http://www.snomedbrowser.com/Codes/Details/313054009 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000976 ! humerus relationship: part_of UBERON:0000976 ! humerus @@ -132266,6 +132675,7 @@ xref: FMA:33112 xref: http://www.snomedbrowser.com/Codes/Details/314626006 xref: MA:0003113 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000979 ! tibia relationship: part_of UBERON:0000979 ! tibia @@ -132281,6 +132691,7 @@ xref: FMA:32838 xref: http://www.snomedbrowser.com/Codes/Details/314625005 xref: MA:0003056 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0000981 ! femur relationship: part_of UBERON:0000981 ! femur @@ -132294,6 +132705,7 @@ synonym: "radial epiphysis" EXACT [FMA:33770] xref: FMA:33770 xref: http://www.snomedbrowser.com/Codes/Details/313055005 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001423 ! radius bone relationship: part_of UBERON:0001423 ! radius bone @@ -132307,6 +132719,7 @@ synonym: "ulnar epiphysis" EXACT [FMA:33748] xref: FMA:33748 xref: http://www.snomedbrowser.com/Codes/Details/313056006 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001424 ! ulna relationship: part_of UBERON:0001424 ! ulna @@ -132333,6 +132746,7 @@ subset: pheno_slim synonym: "fibula epiphysis" EXACT [FMA:33726] xref: FMA:33726 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001446 ! fibula relationship: part_of UBERON:0001446 ! fibula @@ -132347,6 +132761,7 @@ synonym: "metatarsal bone epiphysis" EXACT [FMA:33814] synonym: "metatarsal epiphysis" EXACT [] xref: FMA:33814 xref: http://www.snomedbrowser.com/Codes/Details/313057002 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011973 ! epiphysis of phalanx of pes intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0001448 ! metatarsal bone @@ -132363,6 +132778,7 @@ synonym: "metacarpal epiphysis" EXACT [] xref: FMA:33792 xref: http://www.snomedbrowser.com/Codes/Details/314907001 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0002374 ! metacarpal bone relationship: part_of UBERON:0002374 ! metacarpal bone @@ -133234,6 +133650,7 @@ def: "An epiphysis that is part of a phalanx [Automatically generated definition subset: pheno_slim xref: http://www.snomedbrowser.com/Codes/Details/280033007 is_a: UBERON:0001437 ! epiphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001437 ! epiphysis intersection_of: part_of UBERON:0003221 ! phalanx relationship: part_of UBERON:0003221 ! phalanx @@ -133455,6 +133872,7 @@ def: "Sum of all sensory systems in an organism." [http://orcid.org/0000-0002-66 subset: uberon_slim synonym: "sense organ system" EXACT [FMA:78499] xref: FMA:78499 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: existence_ends_during UBERON:0000066 ! fully formed stage @@ -133756,6 +134174,7 @@ xref: FMA:46616 xref: http://en.wikipedia.org/wiki/Muscles_of_larynx xref: MESH:D007821 is_a: UBERON:0001015 ! musculature +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001015 ! musculature intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -134056,6 +134475,7 @@ name: skeletal muscle tissue of digastric def: "A portion of skeletal muscle tissue that is part of a digastric [Automatically generated definition]." [OBOL:automatic] xref: FMA:261872 is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001562 ! digastric muscle group relationship: part_of UBERON:0001562 ! digastric muscle group @@ -134066,6 +134486,7 @@ name: skeletal muscle tissue of mylohyoid def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Automatically generated definition]." [OBOL:automatic] xref: FMA:261878 is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001564 ! mylohyoid muscle relationship: part_of UBERON:0001564 ! mylohyoid muscle @@ -134086,6 +134507,7 @@ name: skeletal muscle tissue of masseter def: "A portion of skeletal muscle tissue that is part of a masseter [Automatically generated definition]." [OBOL:automatic] xref: FMA:261824 is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001597 ! masseter muscle relationship: part_of UBERON:0001597 ! masseter muscle @@ -134096,6 +134518,7 @@ name: skeletal muscle tissue of temporalis def: "A portion of skeletal muscle tissue that is part of a temporalis [Automatically generated definition]." [OBOL:automatic] xref: FMA:261740 is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001598 ! temporalis muscle relationship: part_of UBERON:0001598 ! temporalis muscle @@ -134106,6 +134529,7 @@ name: skeletal muscle tissue of levator palpebrae superioris def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Automatically generated definition]." [OBOL:automatic] xref: FMA:261782 is_a: UBERON:0003269 ! skeletal muscle tissue of eye +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris relationship: part_of UBERON:0001604 ! levator palpebrae superioris @@ -134117,6 +134541,7 @@ def: "A portion of skeletal muscle tissue that is part of a trapezius [Automatic synonym: "skeletal muscle tissue of trapezius muscle" RELATED [FMA:261938] xref: FMA:261938 is_a: UBERON:0001134 ! skeletal muscle tissue +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002380 ! trapezius muscle relationship: part_of UBERON:0002380 ! trapezius muscle @@ -134615,6 +135040,7 @@ xref: FMA:19153 xref: MA:0002825 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000485 ! simple columnar epithelium intersection_of: part_of UBERON:0001301 ! epididymis @@ -134664,6 +135090,7 @@ xref: FMA:52890 xref: http://www.snomedbrowser.com/Codes/Details/282814006 xref: MA:0002898 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001679 {source="MA"} ! ethmoid bone [Term] @@ -135643,6 +136070,7 @@ synonym: "periotic capsule" RELATED [VHOG:0000854] xref: AAO:0010143 xref: http://www.snomedbrowser.com/Codes/Details/361515007 xref: VHOG:0000854 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001846 ! internal ear @@ -135747,6 +136175,7 @@ xref: MA:0000753 xref: NCIT:C33598 xref: UMLS:C0229681 {source="ncithesaurus:Splenic_Capsule"} is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002106 ! spleen relationship: contributes_to_morphology_of UBERON:0002106 ! spleen @@ -135780,6 +136209,7 @@ xref: MA:0000964 xref: NCIT:C49249 xref: UMLS:C0228162 {source="ncithesaurus:Lateral_Ventricle_Ependyma"} is_a: UBERON:0005357 ! brain ependyma +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle @@ -135798,6 +136228,7 @@ xref: MA:0000986 xref: NCIT:C49232 xref: UMLS:C0228171 {source="ncithesaurus:Fourth_Ventricle_Ependyma"} is_a: UBERON:0005357 ! brain ependyma +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004670 ! ependyma intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle @@ -135823,8 +136254,10 @@ xref: http://www.snomedbrowser.com/Codes/Details/25631003 xref: MA:0001693 xref: NCIT:C13318 xref: UMLS:C0225339 {source="ncithesaurus:Transitional_Epithelium"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000365 ! urothelium is_a: UBERON:0003350 ! epithelium of mucosa +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000365 ! urothelium intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder @@ -135846,6 +136279,7 @@ xref: MA:0001977 xref: NCIT:C52940 xref: UMLS:C0226153 {source="ncithesaurus:Infraorbital_Artery"} is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -135867,8 +136301,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/362194004 xref: MA:0002494 xref: NCIT:C32732 xref: UMLS:C0227518 {source="ncithesaurus:Hepatic_Lobule"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 {source="FMA"} ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001280 ! liver parenchyma relationship: has_part CL:0000182 ! hepatocyte relationship: part_of UBERON:0001280 {source="FMA", source="MA"} ! liver parenchyma @@ -135917,6 +136351,7 @@ xref: FMA:54682 xref: http://en.wikipedia.org/wiki/Pterygoid_processes_of_the_sphenoid xref: http://www.snomedbrowser.com/Codes/Details/140390001 xref: MA:0002774 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015212 ! lateral structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone @@ -135971,6 +136406,7 @@ xref: http://en.wikipedia.org/wiki/Body_of_humerus xref: http://www.snomedbrowser.com/Codes/Details/181927007 xref: MA:0002807 xref: NCIT:C120671 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000976 ! humerus @@ -135989,6 +136425,7 @@ xref: FMA:52904 xref: http://en.wikipedia.org/wiki/Temporal_process_of_the_zygomatic_bone xref: http://www.snomedbrowser.com/Codes/Details/122772003 xref: MA:0002812 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001683 {source="MA"} ! jugal bone relationship: part_of UBERON:0002500 {source="MA"} ! zygomatic arch @@ -136008,6 +136445,7 @@ xref: FMA:52886 xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_temporal_bone xref: http://www.snomedbrowser.com/Codes/Details/414110008 xref: MA:0002811 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001678 {source="MA"} ! temporal bone relationship: part_of UBERON:0002500 {source="MA"} ! zygomatic arch @@ -136034,6 +136472,7 @@ xref: GAID:219 xref: MA:0002816 xref: MESH:D008335 xref: MFMO:0000056 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0000401 ! mandibular ramus @@ -136048,6 +136487,7 @@ xref: FMA:59331 xref: http://www.snomedbrowser.com/Codes/Details/51354009 xref: MA:0002817 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004657 ! mandible condylar process [Term] @@ -136058,6 +136498,7 @@ synonym: "neck of mandible" EXACT [FMA:59332] xref: FMA:59332 xref: http://www.snomedbrowser.com/Codes/Details/368875004 xref: MA:0002818 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0018664 ! neck of bone element relationship: part_of UBERON:0001684 ! mandible relationship: part_of UBERON:0004657 ! mandible condylar process @@ -136076,6 +136517,7 @@ xref: FMA:52833 xref: http://en.wikipedia.org/wiki/Coronoid_process_of_the_mandible xref: http://www.snomedbrowser.com/Codes/Details/244691004 xref: MA:0002819 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0000401 ! mandibular ramus @@ -136091,6 +136533,7 @@ synonym: "temporal crest of mandible" EXACT [FMA:59484] xref: FMA:59484 xref: MA:0002820 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:0010994 ! coronoid process of ulna relationship: part_of UBERON:0000401 ! mandibular ramus relationship: part_of UBERON:0001684 ! mandible @@ -136110,6 +136553,7 @@ xref: AAO:0000695 xref: FMA:11951 xref: http://www.snomedbrowser.com/Codes/Details/277423002 xref: MA:0002876 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0003861 ! neural arch relationship: part_of UBERON:0003861 ! neural arch @@ -136159,6 +136603,7 @@ synonym: "tunica muscularis glandulae vesiculosae" EXACT LATIN [FMA:19404, FMA:T xref: EMAPA:29773 xref: FMA:19404 xref: MA:0002913 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -136189,6 +136634,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/278228007 xref: MA:0002939 xref: VHOG:0000927 is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005983 ! heart layer intersection_of: UBERON:0000158 ! membranous layer intersection_of: part_of UBERON:0002094 ! interventricular septum @@ -136233,6 +136679,8 @@ synonym: "aperture of fourth ventricle" EXACT [FMA:242766] xref: FMA:242766 xref: MA:0002945 is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle @@ -136599,6 +137047,7 @@ xref: MBA:843 xref: NLXANAT:091002 xref: OldNeuroNames:2304 {source="NLXANAT:091002"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation [Term] @@ -136724,6 +137173,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/44840002 xref: MA:0002182 xref: Nasofrontal:vein is_a: UBERON:0001638 ! vein +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connected_to UBERON:0011192 {subset="human_reference_atlas"} ! superior ophthalmic vein relationship: part_of UBERON:0003712 ! cavernous sinus relationship: tributary_of UBERON:0003712 {source="FMA/obol"} ! cavernous sinus @@ -136996,6 +137446,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1284055 xref: http://www.snomedbrowser.com/Codes/Details/361525002 xref: NCIT:C34114 xref: UMLS:C1284055 {source="ncithesaurus:Bulbus_Cordis"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000948 ! heart @@ -137030,7 +137481,6 @@ synonym: "paired appendage" NARROW [VSAO:0000067] synonym: "pectoral or pelvic appendage" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "pelvic/pectoral appendage" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0000067 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000026 {source="VSAO"} ! appendage intersection_of: UBERON:0000026 ! appendage @@ -137137,6 +137587,7 @@ xref: NCIT:C32382 xref: NCIT:C49269 xref: UMLS:C0227937 {source="ncithesaurus:Corpora_Cavernosa"} xref: UMLS:C1709494 {source="ncithesaurus:Penis_Erectile_Tissue"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006609 ! corpus cavernosum intersection_of: UBERON:0006609 ! corpus cavernosum @@ -137172,8 +137623,9 @@ xref: NCIT:C33536 xref: Septum:pellucidum xref: UMLS:C0036700 {source="ncithesaurus:Septum_Pellucidum"} xref: UMLS:C0036700 {source="BIRNLEX:1315"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: composed_primarily_of CL:0000125 ! glial cell relationship: contributes_to_morphology_of UBERON:0000446 ! septum of telencephalon relationship: part_of UBERON:0000446 ! septum of telencephalon @@ -137352,6 +137804,7 @@ xref: MA:0002771 xref: NCIT:C32063 xref: UMLS:C0229465 {source="ncithesaurus:Ampullary_Crest"} is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0004043 ! semicircular canal ampulla relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla @@ -137410,6 +137863,7 @@ xref: MA:0001258 xref: NCIT:C52724 xref: UMLS:C0229251 {source="ncithesaurus:Medial_Palpebral_Ligament"} is_a: UBERON:0000211 ! ligament +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004772 ! eyelid tarsus [Term] @@ -137446,6 +137900,7 @@ xref: MA:0000978 xref: Piriform:cortex xref: UMLS:C0228280 {source="BIRNLEX:1097"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0002894 ! olfactory cortex relationship: only_in_taxon NCBITaxon:32523 {source="Wikipedia"} ! Tetrapoda relationship: part_of UBERON:0002894 ! olfactory cortex @@ -137585,6 +138040,7 @@ name: segmental subdivision of nervous system def: "Any segmental subdivision of a nervous system. Includes metameric developmental segments, such as vertebrates neuromeres." [FBbt:00005140, http://orcid.org/0000-0002-6601-2165] subset: non_informative synonym: "neuromere" RELATED [FBbt:00005140] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit intersection_of: UBERON:0000063 ! organ subunit intersection_of: part_of UBERON:0001016 ! nervous system @@ -137598,7 +138054,9 @@ subset: non_informative synonym: "hindbrain segment" EXACT [FMA:61998] synonym: "segment of hindbrain" EXACT [FMA:61998] xref: FMA:61998 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000063 ! organ subunit intersection_of: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002028 ! hindbrain @@ -137651,6 +138109,7 @@ xref: AAO:0010430 xref: BTO:0001696 xref: http://en.wikipedia.org/wiki/Archenteron xref: XAO:0000092 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: dubious_for_taxon NCBITaxon:7955 {source="http://zfin.org/zf_info/zfbook/stages/gast.html"} ! Danio rerio relationship: part_of UBERON:0004734 ! gastrula @@ -137862,6 +138321,7 @@ xref: EFO:0003542 xref: TAO:0000575 xref: ZFA:0000575 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0004637 ! otic capsule relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule @@ -137951,7 +138411,6 @@ xref: AAO:0000958 xref: TAO:0001381 xref: ZFA:0001381 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011613 ! hypohyal element relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage relationship: develops_from UBERON:0011612 {source="TAO"} ! hypohyal cartilage @@ -137970,6 +138429,7 @@ xref: AAO:0000379 xref: http://en.wikipedia.org/wiki/Palatoquadrate xref: TAO:0001399 xref: ZFA:0001399 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 {source="ZFA"} ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0003108 {source="AAO"} ! suspensorium @@ -138014,6 +138474,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362015004 xref: MA:0001873 xref: NCIT:C34241 xref: UMLS:C0016521 {source="ncithesaurus:Oval_Foramen"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0006678 ! foramen secundum relationship: part_of UBERON:0000922 ! embryo @@ -138120,6 +138581,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245448005 xref: NCIT:C32068 xref: UMLS:C0162322 {source="ncithesaurus:Anal_Gland"} is_a: UBERON:0003408 ! gland of digestive tract +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000159 ! anal canal relationship: part_of UBERON:0000159 ! anal canal @@ -138319,6 +138781,7 @@ xref: NCIT:C33736 xref: Tarsus:(eyelids) xref: UMLS:C0459586 {source="ncithesaurus:Tarsal_Plate"} is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of UBERON:0011823 ! dense connective tissue relationship: has_part CHEBI:18085 ! glycosaminoglycan relationship: part_of UBERON:0001711 {source="FMA"} ! eyelid @@ -138436,6 +138899,7 @@ xref: EMAPA:35474 xref: FMA:321584 xref: http://www.snomedbrowser.com/Codes/Details/361941005 xref: MA:0002728 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004777 ! respiratory system submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001737 ! larynx @@ -138469,6 +138933,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1708197 xref: MA:0001899 xref: NCIT:C49299 xref: UMLS:C1708197 {source="ncithesaurus:Gastrointestinal_Tract_Lamina_Propria"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -138494,6 +138959,7 @@ xref: MA:0001633 xref: NCIT:C49228 xref: UMLS:C1708175 {source="ncithesaurus:Gallbladder_Lamina_Propria"} is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -138537,6 +139003,7 @@ xref: FMA:14659 xref: http://www.snomedbrowser.com/Codes/Details/362197006 xref: MA:0001634 is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -138616,6 +139083,7 @@ xref: BTO:0005568 xref: EMAPA:36591 xref: http://www.snomedbrowser.com/Codes/Details/410433007 xref: MA:0001521 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -138689,6 +139157,7 @@ synonym: "mucous gland of larynx" EXACT [OBOL:automatic] xref: EMAPA:37631 {source="MA:th"} xref: MA:0001767 is_a: UBERON:0000414 ! mucous gland +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland intersection_of: part_of UBERON:0001737 ! larynx @@ -138729,6 +139198,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1515431 xref: MA:0002674 xref: NCIT:C33773 xref: UMLS:C1515431 {source="ncithesaurus:Thymic_Trabecula"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000440 ! trabecula intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002370 ! thymus @@ -138747,6 +139217,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518866 xref: MA:0002517 xref: NCIT:C33255 xref: UMLS:C1518866 {source="ncithesaurus:Pancreatic_Endocrine_Secretion"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: part_of UBERON:0000016 ! endocrine pancreas @@ -138764,6 +139235,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518867 xref: MA:0002518 xref: NCIT:C33256 xref: UMLS:C1518867 {source="ncithesaurus:Pancreatic_Exocrine_Secretion"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004795 ! pancreas secretion intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: part_of UBERON:0000017 ! exocrine pancreas @@ -138784,6 +139256,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227179 xref: MA:0002514 xref: NCIT:C52555 xref: UMLS:C0227179 {source="ncithesaurus:Esophagus_Secretion"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000456 ! secretion of exocrine gland intersection_of: UBERON:0000456 ! secretion of exocrine gland intersection_of: part_of UBERON:0001043 ! esophagus @@ -138892,6 +139365,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1707050 xref: MA:0001833 xref: NCIT:C49207 xref: UMLS:C1707050 {source="ncithesaurus:Bronchus_Basal_Lamina"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004799 ! trachea basal lamina intersection_of: UBERON:0000482 ! basal lamina of epithelium intersection_of: part_of UBERON:0002185 ! bronchus @@ -138939,6 +139413,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/321764001 xref: MA:0001480 xref: VHOG:0000981 is_a: UBERON:0004807 ! respiratory system epithelium +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0010499 ! pseudostratified ciliated columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000065 ! respiratory tract @@ -138956,8 +139431,8 @@ synonym: "penis epithelial tissue" EXACT [OBOL:automatic] xref: EHDAA2:0004039 xref: EMAPA:35674 xref: MA:0001742 -is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000989 ! penis relationship: part_of UBERON:0000989 ! penis @@ -138978,8 +139453,8 @@ xref: BTO:0002402 xref: CALOHA:TS-1316 xref: EMAPA:29043 xref: MA:0001718 -is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000993 ! oviduct relationship: part_of UBERON:0000993 ! oviduct @@ -139003,6 +139478,7 @@ xref: MA:0001745 xref: NCIT:C49295 xref: UMLS:C1710049 {source="ncithesaurus:Seminal_Vesicle_Epithelium"} is_a: UBERON:0004910 ! epithelium of male gonad +is_a: UBERON:0012275 ! meso-epithelium is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000998 ! seminal vesicle @@ -139299,6 +139775,7 @@ xref: BTO:0000059 xref: CALOHA:TS-0505 xref: EMAPA:35457 xref: MA:0002846 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002113 ! kidney @@ -139318,7 +139795,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1711208 xref: MA:0001629 xref: NCIT:C43616 xref: UMLS:C1711208 {source="ncithesaurus:Bile_Duct_Epithelium"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0034932 ! epithelium of biliary system is_a: UBERON:0034969 ! epithelial layer of duct intersection_of: UBERON:0000483 ! epithelium @@ -139423,6 +139900,7 @@ synonym: "thyroid medulla" EXACT [OBOL:automatic] xref: EMAPA:37768 {source="MA:th"} xref: MA:0000132 is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -139517,6 +139995,7 @@ name: hepatic duct smooth muscle def: "Smooth muscle tissue in all or part of a hepatic duct." [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:37598 {source="MA:th"} xref: MA:0001640 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005171 ! hepatic duct @@ -139853,6 +140332,7 @@ xref: FMA:84961 xref: http://www.snomedbrowser.com/Codes/Details/280541000 xref: Orbit:(anatomy) xref: ZFA:0005558 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0001697 ! orbit of skull @@ -139866,6 +140346,7 @@ def: "A layer of tissue in the eye of many vertebrate animals, that lies immedia synonym: "tapeta lucida" EXACT PLURAL [] synonym: "tapetum lucidum" EXACT [] xref: Tapetum:lucidum +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015169 ! tapetum relationship: part_of UBERON:0010230 ! eyeball of camera-type eye @@ -139877,6 +140358,7 @@ synonym: "parietal eye" EXACT [http://en.wikipedia.org/wiki/Parietal_eye] synonym: "third eye" RELATED [http://en.wikipedia.org/wiki/Parietal_eye] xref: Parietal:eye is_a: UBERON:0003103 {source="cjm"} ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part UBERON:0005388 {gci_filler="NCBITaxon:8508", gci_relation="part_of", source="Wikipedia"} ! photoreceptor array relationship: has_part UBERON:0005389 {gci_filler="NCBITaxon:8508", gci_relation="part_of", source="Wikipedia"} ! transparent eye structure relationship: part_of UBERON:0015238 {source="cjm"} ! pineal complex @@ -139914,6 +140396,7 @@ xref: BILA:0000047 xref: Division_into_layers xref: FMA:295570 xref: XAO:0000271 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 ! lateral plate mesoderm @@ -139931,6 +140414,7 @@ xref: BILA:0000044 xref: Division_into_layers xref: FMA:295568 xref: XAO:0000276 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 ! lateral plate mesoderm @@ -139949,6 +140433,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1519472 xref: NCIT:C34303 xref: UMLS:C1519472 {source="ncithesaurus:Splanchnopleure"} xref: VHOG:0000558 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 {source="EHDAA2"} ! lateral plate mesoderm @@ -139966,6 +140451,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1519423 xref: NCIT:C34301 xref: UMLS:C1519423 {source="ncithesaurus:Somatopleure"} xref: VHOG:0000557 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003081 {source="EHDAA2"} ! lateral plate mesoderm @@ -140052,6 +140538,7 @@ xref: AAO:0000478 xref: EFO:0003426 xref: TAO:0000091 xref: ZFA:0000091 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0000922 ! embryo @@ -140067,7 +140554,7 @@ xref: FMA:77859 xref: http://en.wikipedia.org/wiki/Eponychium xref: http://www.snomedbrowser.com/Codes/Details/24631007 xref: MA:0002704 -is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0001003 ! skin epidermis relationship: surrounds UBERON:0001705 ! nail @@ -140080,8 +140567,8 @@ synonym: "lung-associated mesenchyme" EXACT [GO:0060484] synonym: "mesenchyme of lung" EXACT [OBOL:automatic] synonym: "pulmonary mesenchyme" EXACT [GO:0060484] xref: EMAPA:32866 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme -is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002048 ! lung relationship: develops_from UBERON:0003081 ! lateral plate mesoderm @@ -140130,6 +140617,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/264017007 xref: MA:0003099 xref: NCIT:C49282 xref: UMLS:C0225701 {source="ncithesaurus:Hilar_Area_of_the_Lung"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002048 ! lung @@ -140213,6 +140701,7 @@ id: UBERON:0004892 name: lobar bronchus alveolar system def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus." [LG:0012622] is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002183 ! lobar bronchus [Term] @@ -140230,6 +140719,7 @@ xref: MA:0000421 xref: NCIT:C49473 xref: UMLS:C1706784 {source="ncithesaurus:Alveolar_Septum"} is_a: UBERON:0003037 ! septum +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003037 ! septum intersection_of: adjacent_to UBERON:0002299 ! alveolus of lung relationship: adjacent_to UBERON:0002299 ! alveolus of lung @@ -140254,6 +140744,7 @@ xref: MA:0002568 xref: NCIT:C13085 xref: UMLS:C0225695 {source="ncithesaurus:Alveolar_Wall"} is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002299 ! alveolus of lung relationship: contributes_to_morphology_of UBERON:0002299 ! alveolus of lung @@ -140427,7 +140918,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/279973004 xref: NCIT:C33010 xref: UMLS:C0226875 {source="ncithesaurus:Lower_Gastrointestinal_Tract"} xref: Upper_gastrointestinal_tract -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001046 ! hindgut relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -140446,7 +140936,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/181244000 xref: NCIT:C33837 xref: UMLS:C0226874 {source="ncithesaurus:Upper_Gastrointestinal_Tract"} xref: Upper_gastrointestinal_tract -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: develops_from UBERON:0001041 ! foregut @@ -140462,6 +140951,7 @@ xref: EHDAA:5931 xref: http://linkedlifedata.com/resource/umls/id/C1517534 xref: NCIT:C32676 xref: UMLS:C1517534 {source="ncithesaurus:Germinal_Epithelium"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000483 ! epithelium @@ -140555,6 +141045,7 @@ xref: FMA:15953 xref: http://www.snomedbrowser.com/Codes/Details/245389007 xref: MA:0003107 xref: NCIT:C119578 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000320 ! duodenal mucosa @@ -140577,6 +141068,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/181271000 xref: MESH:A03.159.183.079.300.900.600 xref: NCIT:C13065 xref: UMLS:C0028872 {source="ncithesaurus:Sphincter_of_Oddi"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011185 ! gastrointestinal sphincter intersection_of: UBERON:0004590 ! sphincter muscle intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla @@ -140681,6 +141173,7 @@ synonym: "segment of intestinal tract" RELATED [] synonym: "subdivision of alimentary system" RELATED [FMA:71131] xref: FBbt:00100315 xref: FMA:71131 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: subdivision_of UBERON:0001555 ! digestive tract @@ -140716,7 +141209,6 @@ xref: MBA:98 xref: NLX:144262 xref: PBA:294021970 xref: Subventricular:zone -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer relationship: contains_process GO:0022008 ! neurogenesis @@ -140955,6 +141447,7 @@ synonym: "biliary tree submucosa" EXACT [OBOL:automatic] synonym: "submucosa of biliary tract" EXACT [OBOL:automatic] xref: FMA:18009 is_a: UBERON:0000009 ! submucosa +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0001173 ! biliary tree @@ -141027,6 +141520,7 @@ xref: EMAPA:32275 xref: FMA:15929 xref: http://www.snomedbrowser.com/Codes/Details/88384001 is_a: UBERON:0000009 ! submucosa +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder @@ -141198,6 +141692,7 @@ xref: FMA:15894 xref: galen:MucousMembraneOfUreter xref: http://www.snomedbrowser.com/Codes/Details/40476001 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0000056 ! ureter @@ -141217,6 +141712,7 @@ synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic] xref: FMA:64015 xref: http://www.snomedbrowser.com/Codes/Details/156751001 is_a: UBERON:0004987 ! mucosa of laryngopharynx +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000388 ! epiglottis relationship: part_of UBERON:0000388 ! epiglottis @@ -141237,6 +141733,7 @@ synonym: "vaginal mucosa" EXACT [FMA:19975] xref: BTO:0005676 xref: FMA:19975 xref: http://www.snomedbrowser.com/Codes/Details/362245006 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000996 ! vagina @@ -141264,6 +141761,7 @@ synonym: "seminal vesicle organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa glandulae vesiculosae" EXACT LATIN [FMA:19405, FMA:TA] xref: FMA:19405 xref: http://www.snomedbrowser.com/Codes/Details/252260007 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000998 ! seminal vesicle @@ -141722,6 +142220,7 @@ synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic] synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic] xref: FMA:14695 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001173 ! biliary tree relationship: part_of UBERON:0001173 ! biliary tree @@ -141881,6 +142380,7 @@ synonym: "renal pelvis organ mucosa" EXACT [OBOL:automatic] synonym: "tunica mucosa pelvis renalis" EXACT LATIN [FMA:17931, FMA:TA] xref: FMA:17931 xref: http://www.snomedbrowser.com/Codes/Details/243482002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001224 ! renal pelvis @@ -142252,6 +142752,7 @@ synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic] xref: EMAPA:36028 xref: FMA:60113 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001706 ! nasal septum relationship: part_of UBERON:0001706 ! nasal septum @@ -142285,6 +142786,7 @@ synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic] synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic] xref: FMA:59765 is_a: UBERON:0003729 ! mouth mucosa +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001716 ! secondary palate relationship: part_of UBERON:0001716 ! secondary palate @@ -142369,6 +142871,7 @@ xref: FMA:54971 xref: http://www.snomedbrowser.com/Codes/Details/361938001 is_a: UBERON:0000355 ! pharyngeal mucosa is_a: UBERON:0000379 ! tracheal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -142395,6 +142898,7 @@ synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic] xref: FMA:54933 xref: http://www.snomedbrowser.com/Codes/Details/144632009 is_a: UBERON:0000355 ! pharyngeal mucosa +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004786 ! gastrointestinal system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001729 ! oropharynx @@ -142508,6 +143012,7 @@ synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic] synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic] xref: FMA:85366 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001770 ! lacrimal canaliculus relationship: part_of UBERON:0001770 ! lacrimal canaliculus @@ -142540,6 +143045,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226933 xref: http://www.snomedbrowser.com/Codes/Details/362088009 xref: NCIT:C12224 xref: UMLS:C0226933 {source="ncithesaurus:Mucosa_of_the_Upper_Lip"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036294 ! mucosa of lip intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001834 ! upper lip @@ -142562,6 +143068,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226939 xref: http://www.snomedbrowser.com/Codes/Details/362089001 xref: NCIT:C12225 xref: UMLS:C0226939 {source="ncithesaurus:Mucosa_of_the_Lower_Lip"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036294 ! mucosa of lip intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001835 ! lower lip @@ -142591,6 +143098,7 @@ synonym: "tunica mucosa vesicae biliaris" EXACT LATIN [FMA:14662, FMA:TA] xref: FMA:14662 xref: http://www.snomedbrowser.com/Codes/Details/362196002 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -142845,6 +143353,7 @@ synonym: "tympanic membrane external middle ear cavity epithelial component" EXA synonym: "tympanic membrane mucosa" EXACT [FMA:56844] xref: FMA:56844 xref: http://www.snomedbrowser.com/Codes/Details/36411006 +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0009647 ! tympanic membrane epithelium intersection_of: UBERON:0009647 ! tympanic membrane epithelium intersection_of: part_of UBERON:0010063 ! tympanic cavity epithelium @@ -142864,6 +143373,7 @@ synonym: "nasolacrimal ductal mucosa" EXACT [FMA:59664] synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic] xref: FMA:59664 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002392 ! nasolacrimal duct relationship: part_of UBERON:0002392 ! nasolacrimal duct @@ -142991,6 +143501,7 @@ synonym: "uterine tube mucosa of organ" EXACT [OBOL:automatic] synonym: "uterine tube mucous membrane" EXACT [OBOL:automatic] synonym: "uterine tube organ mucosa" EXACT [OBOL:automatic] xref: FMA:18319 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0019042 ! reproductive system mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0003889 ! fallopian tube @@ -143026,6 +143537,7 @@ xref: EMAPA:37646 {source="MA:th"} xref: FMA:14506 xref: http://www.snomedbrowser.com/Codes/Details/271187002 xref: MA:0001643 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002107 ! liver @@ -143042,6 +143554,7 @@ xref: FMA:19812 xref: http://www.snomedbrowser.com/Codes/Details/362279007 xref: MA:0003240 xref: Mediastinum:testis +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0002384 ! connective tissue relationship: part_of UBERON:0000473 ! testis @@ -143075,7 +143588,6 @@ synonym: "nerve cord" EXACT [BILA:0000136] synonym: "true nerve cord" EXACT [http://orcid.org/0000-0002-6601-2165] xref: BILA:0000136 xref: BTO:0001656 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 {source="cjm"} ! central nervous system cell part cluster relationship: develops_from UBERON:0000924 ! ectoderm relationship: only_in_taxon NCBITaxon:33213 ! Bilateria @@ -143179,6 +143691,7 @@ xref: NCIT:C34224 xref: Neural:groove xref: UMLS:C0814992 {source="ncithesaurus:Neural_Groove"} xref: XAO:0000248 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate @@ -143271,6 +143784,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0005069 name: neural fold hinge point def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube @@ -143332,7 +143846,7 @@ synonym: "forebrain-midbrain boundary region" EXACT [EMAPA:36449] xref: EMAPA:36449 xref: TAO:0001367 xref: ZFA:0001367 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0001890 ! forebrain @@ -143347,6 +143861,7 @@ id: UBERON:0005076 name: hindbrain-spinal cord boundary def: "An anatomical boundary that adjacent_to a hindbrain and adjacent_to a spinal cord." [OBOL:automatic] synonym: "hindbrain-spinal cord boundary region" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0002028 ! hindbrain @@ -143362,6 +143877,7 @@ def: "A temporary opening leading from the central canal of the embryonic neural subset: pheno_slim xref: http://www.snomedbrowser.com/Codes/Details/360408007 is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure union_of: UBERON:0005070 ! anterior neuropore union_of: UBERON:0005071 ! posterior neuropore relationship: connects UBERON:0003842 ! neural tube lumen @@ -143381,9 +143897,8 @@ xref: EMAPA:16904 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=208 xref: Lamina:terminalis xref: VHOG:0001547 -is_a: CARO:0000000 ! anatomical entity -is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium disjoint_from: UBERON:0014898 ! lamina terminalis of ischium relationship: develops_from UBERON:0005070 ! anterior neuropore relationship: output_of GO:0021506 ! anterior neuropore closure @@ -143398,6 +143913,7 @@ xref: BTO:0001716 xref: http://en.wikipedia.org/wiki/Eggshell xref: MESH:D004528 xref: WBbt:0005843 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: bounding_layer_of UBERON:0007379 ! shelled egg relationship: part_of UBERON:0007379 ! shelled egg @@ -143445,6 +143961,7 @@ name: ectodermal placode def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]." [GO:0060788] synonym: "epithelial placode" RELATED [AEO:0000112] xref: AEO:0000218 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 ! primordium is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm @@ -143533,6 +144050,7 @@ xref: EHDAA:482 xref: EMAPA:16238 xref: FMA:70321 xref: VHOG:0000488 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: in_left_side_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002063 ! sinus venosus @@ -143546,6 +144064,7 @@ xref: EHDAA:484 xref: EMAPA:16239 xref: FMA:70318 xref: VHOG:0000489 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: in_right_side_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002063 ! sinus venosus @@ -143603,6 +144122,7 @@ xref: EMAPA:35514 xref: FMA:17719 xref: http://en.wikipedia.org/wiki/Descending_limb_of_loop_of_Henle xref: MA:0002625 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001288 ! loop of Henle relationship: part_of UBERON:0004136 ! intermediate tubule @@ -143646,6 +144166,7 @@ name: early distal convoluted tubule def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067] xref: EMAPA:28393 is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] @@ -143654,6 +144175,7 @@ name: late distal convoluted tubule def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068] xref: EMAPA:28393 is_a: UBERON:0004211 ! nephron epithelium +is_a: UBERON:0012275 ! meso-epithelium relationship: part_of UBERON:0001292 ! distal convoluted tubule [Term] @@ -143661,6 +144183,7 @@ id: UBERON:0005103 name: mesonephric epithelium def: "An epithelium that is part of a mesonephros [Automatically generated definition]." [OBOL:automatic] is_a: UBERON:0004819 ! kidney epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -143700,6 +144223,7 @@ synonym: "cap mesenchyme" EXACT [EMAPA:27621] synonym: "condensed mesenchyme" RELATED [EMAPA:27621] xref: EMAPA:27621 xref: MA:0002997 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0003220 ! metanephric mesenchyme @@ -143710,6 +144234,7 @@ id: UBERON:0005108 name: metanephric epithelium def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207] is_a: UBERON:0004819 ! kidney epithelium +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0000081 ! metanephros @@ -143745,6 +144270,7 @@ relationship: part_of UBERON:0000081 ! metanephros id: UBERON:0005111 name: metanephric pyramid def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004200 ! kidney pyramid intersection_of: UBERON:0004200 ! kidney pyramid intersection_of: part_of UBERON:0000081 ! metanephros @@ -143773,6 +144299,7 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005115 name: metanephric cortical collecting duct def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004203 ! cortical collecting duct intersection_of: UBERON:0004203 ! cortical collecting duct intersection_of: part_of UBERON:0000081 ! metanephros @@ -143784,6 +144311,7 @@ relationship: part_of UBERON:0010533 {is_inferred="true", source="https://github id: UBERON:0005116 name: metanephric descending thin limb def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005096 ! descending thin limb intersection_of: UBERON:0005096 ! descending thin limb intersection_of: part_of UBERON:0000081 ! metanephros @@ -143841,6 +144369,7 @@ relationship: part_of UBERON:0005129 {source="https://github.com/obophenotype/ub id: UBERON:0005121 name: metanephric long descending thin limb bend def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004206 ! long descending thin limb bend intersection_of: UBERON:0004206 ! long descending thin limb bend intersection_of: part_of UBERON:0000081 ! metanephros @@ -143861,6 +144390,7 @@ relationship: part_of UBERON:0004738 {is_inferred="true", source="https://github id: UBERON:0005123 name: metanephric prebend segment def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004207 ! prebend segment of loop of Henle intersection_of: UBERON:0004207 ! prebend segment of loop of Henle intersection_of: part_of UBERON:0000081 ! metanephros @@ -144001,6 +144531,7 @@ name: metanephric capsule alt_id: UBERON:0005112 def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213] is_a: UBERON:0002015 ! kidney capsule +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0000081 ! metanephros @@ -144065,7 +144596,6 @@ def: "A metanephric nephron tubule is an epithelial tube that is part of the met is_a: UBERON:0001231 ! nephron tubule is_a: UBERON:0005106 ! metanephric tubule is_a: UBERON:0005134 ! metanephric nephron epithelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0001231 ! nephron tubule intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0003220 {source="ISBN:9780878932504"} ! metanephric mesenchyme @@ -144082,7 +144612,6 @@ xref: EHDAA:9346 xref: EMAPA:27678 is_a: UBERON:0004209 ! renal vesicle is_a: UBERON:0005108 ! metanephric epithelium -is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0004209 ! renal vesicle intersection_of: part_of UBERON:0000081 ! metanephros relationship: develops_from UBERON:0005113 {source="EHDAA2"} ! metanephric cortex mesenchyme @@ -144181,6 +144710,7 @@ synonym: "CNS parenchyma" EXACT [OBOL:automatic] synonym: "parenchyma of central nervous system" EXACT [] synonym: "parenchyma of CNS" EXACT [OBOL:automatic] is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001017 ! central nervous system property_value: dc-contributor https://github.com/cmungall @@ -144207,6 +144737,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279289009 xref: http://www.snomedbrowser.com/Codes/Details/9535007 xref: Pyramid:(brainstem) is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -144337,9 +144868,9 @@ xref: MA:0001460 xref: Membrana:granulosa xref: TAO:0001112 xref: ZFA:0001112 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000119 ! cell layer is_a: UBERON:0004911 ! epithelium of female gonad +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000119 ! cell layer intersection_of: composed_primarily_of CL:0000501 ! granulosa cell intersection_of: part_of UBERON:0001305 ! ovarian follicle @@ -144444,6 +144975,7 @@ xref: MESH:A14.254.900.720.265 xref: TAO:0005138 xref: ZFA:0005138 is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0008281 ! tooth bud @@ -144526,6 +145058,8 @@ xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovary_(hair) xref: http://www.snomedbrowser.com/Codes/Details/318929009 xref: MA:0000158 is_a: UBERON:0000958 ! medulla of organ +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000958 ! medulla of organ intersection_of: part_of UBERON:0001037 ! strand of hair relationship: part_of UBERON:0001037 ! strand of hair @@ -144540,6 +145074,7 @@ xref: BTO:0004536 xref: EMAPA:28061 xref: EMAPA:35459 xref: MA:0002935 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube intersection_of: UBERON:0013522 ! subdivision of tube intersection_of: part_of UBERON:0000362 ! renal medulla @@ -144611,6 +145146,7 @@ xref: UMLS:C0226184 {source="ncithesaurus:Ethmoidal_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest union_of: UBERON:0012318 ! anterior ethmoidal artery union_of: UBERON:0012319 ! posterior ethmoidal artery relationship: branching_part_of UBERON:0001619 {source="FMA-abduced"} ! ophthalmic artery @@ -144659,6 +145195,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1710156 xref: MA:0000764 xref: NCIT:C49760 xref: UMLS:C1710156 {source="ncithesaurus:Spleen_Germinal_Center"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010754 ! germinal center intersection_of: UBERON:0010754 ! germinal center intersection_of: part_of UBERON:0002106 ! spleen @@ -144677,7 +145214,6 @@ xref: EMAPA:16990 xref: EMAPA:25149 xref: MA:0000234 xref: VHOG:0000920 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001780 {source="MA"} ! spinal nerve relationship: develops_from UBERON:0000044 {source="EHDAA2"} ! dorsal root ganglion relationship: develops_from UBERON:0001806 {source="EHDAA2"} ! sympathetic ganglion @@ -144769,6 +145305,7 @@ subset: organ_slim synonym: "laryngeal submucosa gland" RELATED [EMAPA:35475] xref: EMAPA:35475 xref: MA:0002729 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0004778 ! larynx submucosa @@ -144782,6 +145319,7 @@ xref: EMAPA:35902 xref: FMA:19979 xref: MA:0002737 is_a: UBERON:0000030 ! lamina propria +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000996 ! vagina @@ -144794,8 +145332,8 @@ def: "Stromal matrix surrounding blood vessels within the choroid plexus." [PMCI synonym: "choroid plexus stromal matrix" EXACT [PMCID:PMC3496674] xref: EMAPA:36609 xref: MA:0000825 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0001886 ! choroid plexus relationship: has_part CL:0000235 ! macrophage @@ -144808,6 +145346,7 @@ name: tonsil capsule def: "A capsule that is part of a tonsil [Automatically generated definition]." [OBOL:automatic] xref: FMA:294647 xref: MA:0000776 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: part_of UBERON:0002372 ! tonsil @@ -144824,6 +145363,7 @@ xref: EHDAA2:0000302 xref: EMAPA:17327 xref: MA:0001871 is_a: UBERON:0003978 ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium @@ -144861,6 +145401,7 @@ synonym: "testis interstitium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: EMAPA:18687 xref: http://www.snomedbrowser.com/Codes/Details/362280005 xref: MA:0002713 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005169 ! interstitial tissue intersection_of: UBERON:0005169 ! interstitial tissue @@ -144983,6 +145524,7 @@ def: "A parenchyma that is part of a head of pancreas [Automatically generated d xref: EMAPA:17508 xref: VHOG:0000838 is_a: UBERON:0001978 ! parenchyma of pancreas +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001069 ! head of pancreas relationship: part_of UBERON:0001069 ! head of pancreas @@ -145035,6 +145577,7 @@ xref: EHDAA2:0001392 xref: EMAPA:17513 xref: VHOG:0000469 is_a: UBERON:0001978 ! parenchyma of pancreas +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001151 ! tail of pancreas relationship: part_of UBERON:0001151 ! tail of pancreas @@ -145178,6 +145721,7 @@ xref: UMLS:C0458718 {source="ncithesaurus:Vestibule"} xref: VHOG:0001220 xref: XAO:0000199 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0001839 ! bony labyrinth @@ -145282,6 +145826,7 @@ def: "A renal pelvis that is part of a metanephros." [OBOL:automatic] synonym: "metanephros pelvis" EXACT [VHOG:0000945] xref: VHOG:0000945 is_a: UBERON:0001224 ! renal pelvis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0000081 ! metanephros relationship: part_of UBERON:0000081 ! metanephros @@ -145293,6 +145838,7 @@ def: "A gland that is part of a stomodeum." [OBOL:automatic] subset: organ_slim synonym: "stomatodaeum gland" EXACT [VHOG:0000658] xref: VHOG:0000658 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000930 ! stomodeum @@ -145583,6 +146129,7 @@ xref: EMAPA:37623 {source="MA:th"} xref: FMA:74288 xref: KUPO:0001008 xref: MA:0001648 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001225 {source="FMA", source="KUPO"} ! cortex of kidney @@ -145746,6 +146293,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1378 xref: TAO:0000447 xref: Tela:chorioidea xref: ZFA:0000447 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0005358 {source="FMA"} ! ventricle of nervous system @@ -145758,6 +146306,7 @@ synonym: "tela choroidea of cerebral aqueduct" EXACT [https://orcid.org/0000-000 synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157] xref: TAO:0005157 xref: ZFA:0005157 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002289 ! midbrain cerebral aqueduct @@ -145783,7 +146332,9 @@ xref: http://en.wikipedia.org/wiki/Tela_chorioidea_of_fourth_ventricle xref: http://www.snomedbrowser.com/Codes/Details/362321009 xref: TAO:0005158 xref: ZFA:0005158 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002422 ! fourth ventricle @@ -145806,6 +146357,7 @@ xref: http://en.wikipedia.org/wiki/Tela_chorioidea_of_third_ventricle xref: http://www.snomedbrowser.com/Codes/Details/362320005 xref: TAO:0005159 xref: ZFA:0005159 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005283 ! tela choroidea intersection_of: UBERON:0005283 ! tela choroidea intersection_of: part_of UBERON:0002286 ! third ventricle @@ -145852,9 +146404,7 @@ xref: HBA:9512 xref: http://en.wikipedia.org/wiki/Myelencephalon xref: MA:0000205 xref: VHOG:0000456 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004733 ! segmental subdivision of hindbrain -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from NCBITaxon:6072 ! Eumetazoa relationship: develops_from UBERON:0000955 ! brain relationship: develops_from UBERON:0001016 ! nervous system @@ -145891,6 +146441,7 @@ xref: CALOHA:TS-2119 xref: EFO:0001406 xref: MAT:0000061 xref: MIAA:0000061 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0016887 ! entire extraembryonic component @@ -146011,7 +146562,6 @@ is_a: UBERON:0005295 ! sex cord intersection_of: UBERON:0005295 ! sex cord intersection_of: part_of UBERON:0000473 ! testis relationship: develops_from UBERON:0000990 ! reproductive system -relationship: develops_from UBERON:0009117 ! indifferent gonad relationship: develops_from UBERON:0009196 ! indifferent external genitalia relationship: develops_from UBERON:0010141 ! primitive sex cord of indifferent gonad relationship: immediate_transformation_of UBERON:0010141 {source="Bgee:AN"} ! primitive sex cord of indifferent gonad @@ -146025,6 +146575,7 @@ synonym: "clitoris skin" EXACT [] xref: FMA:20168 xref: http://www.snomedbrowser.com/Codes/Details/361374002 is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002411 ! clitoris @@ -146077,6 +146628,7 @@ xref: MA:0000403 xref: NCIT:C79432 xref: UMLS:C0227956 {source="ncithesaurus:Preputial_Gland"} is_a: UBERON:0000359 ! preputial gland +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland intersection_of: UBERON:0000359 ! preputial gland intersection_of: part_of UBERON:0003101 ! male organism @@ -146168,6 +146720,7 @@ xref: TAO:0001072 xref: UMLS:C0229577 {source="ncithesaurus:Thyroid_Gland_Follicle"} xref: ZFA:0001072 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -146205,6 +146758,7 @@ xref: AAO:0011069 xref: http://en.wikipedia.org/wiki/Nephrostome xref: XAO:0000062 is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002120 ! pronephros [Term] @@ -146214,6 +146768,7 @@ def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:00 xref: AAO:0011091 xref: XAO:0000285 is_a: UBERON:0001285 ! nephron +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0002120 ! pronephros relationship: part_of UBERON:0002120 ! pronephros @@ -146228,6 +146783,7 @@ xref: TAO:0001558 xref: XAO:0004105 xref: ZFA:0001558 is_a: UBERON:0001231 ! nephron tubule +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0001231 ! nephron tubule intersection_of: part_of UBERON:0005309 ! pronephric nephron relationship: dubious_for_taxon NCBITaxon:32524 {source="ISBN:0073040584"} ! Amniota @@ -146239,7 +146795,6 @@ name: mammary placode def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596] synonym: "mammary anlage" RELATED [] xref: EMAPA:35541 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode relationship: develops_from UBERON:0008425 {source="Stedmans"} ! mammary ridge relationship: part_of UBERON:0000076 {source="http://www.ncbi.nlm.nih.gov/pubmed/20484386"} ! external ectoderm @@ -146294,6 +146849,7 @@ def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155] xref: BTO:0000137 is_a: UBERON:0001917 ! endothelium of artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002012 ! pulmonary artery relationship: part_of UBERON:0002012 ! pulmonary artery @@ -146305,6 +146861,7 @@ def: "The collecting duct is the final common path through which urine flows bef xref: AAO:0010390 xref: XAO:0000151 is_a: UBERON:0001232 ! collecting duct of renal tubule +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001232 ! collecting duct of renal tubule intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -146337,6 +146894,7 @@ xref: AAO:0010387 xref: XAO:0000292 xref: ZFA:0005592 is_a: UBERON:0001285 ! nephron +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001285 ! nephron intersection_of: part_of UBERON:0000080 ! mesonephros relationship: develops_from UBERON:0005323 {source="XAO"} ! mesonephric mesenchyme @@ -146352,6 +146910,7 @@ xref: EHDAA2:0001132 xref: EMAPA:16745 xref: XAO:0000291 is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -146481,6 +147040,7 @@ name: oral lamina propria def: "A lamina propria that is part of a mucosa of oral region." [OBOL:automatic] synonym: "lamina propria of oral mucosa" EXACT [] xref: EMAPA:26947 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0003343 ! mucosa of oral region @@ -146497,7 +147057,7 @@ xref: Chorioallantoic:membrane xref: http://linkedlifedata.com/resource/umls/id/C0178551 xref: NCIT:C28216 xref: UMLS:C0178551 {source="ncithesaurus:Chorioallantoic_Membrane"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005631 ! extraembryonic membrane relationship: capable_of GO:0007585 {source="Hymans"} ! respiratory gaseous exchange by respiratory system relationship: develops_from UBERON:0003124 ! chorion membrane @@ -146519,8 +147079,8 @@ synonym: "lamina choroidocapillaris" RELATED LATIN [http://en.wikipedia.org/wiki xref: FMA:58437 xref: http://en.wikipedia.org/wiki/Capillary_lamina_of_choroid xref: http://www.snomedbrowser.com/Codes/Details/280899009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of UBERON:0001982 ! capillary relationship: part_of UBERON:0013399 ! blood vessel layer of choroid @@ -146594,6 +147154,7 @@ xref: FMA:52761 xref: http://www.snomedbrowser.com/Codes/Details/368926004 xref: MA:0002987 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone @@ -146614,7 +147175,6 @@ xref: EMAPA:32711 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2702 xref: MBA:695 xref: PBA:294021914 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: has_potential_to_develop_into UBERON:0001950 {source="NCBIBook:NBK10047"} ! neocortex @@ -146832,6 +147392,7 @@ id: UBERON:0005353 name: spleen perifollicular zone def: "The compartment located between the marginal zone and the red pulp harboring scattered B and T lymphocytes[MP]." [MP:0010245] subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: contributes_to_morphology_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen @@ -146842,6 +147403,7 @@ id: UBERON:0005354 name: malleus processus brevis def: "The projection extending from the base of the manubrium of the malleus which contacts the upper part of the tympanic membrane where the tympanic cavity makes a deep pocket (epitympanic pocket) surrounding the cartilaginous nodule[MP]." [MP:0010324] subset: pheno_slim +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone @@ -146857,6 +147419,7 @@ xref: FMA:52762 xref: http://en.wikipedia.org/wiki/Neck_of_malleus xref: http://www.snomedbrowser.com/Codes/Details/368927008 xref: MA:0002988 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0018664 ! neck of bone element relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone @@ -146927,6 +147490,7 @@ synonym: "region of wall of ventricular system of neuraxis" RELATED [FMA:242770] synonym: "ventricular layer" EXACT [EMAPA:35209] xref: EMAPA:35209 xref: FMA:242770 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer property_value: dc-contributor https://github.com/cmungall relationship: part_of UBERON:0001016 ! nervous system @@ -146970,8 +147534,8 @@ synonym: "inferior ganglion of glossopharyngeal nerve" EXACT [FMA:53475] synonym: "inferior glossopharyngeal ganglion" EXACT [FMA:53475] synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001084] synonym: "ninth cranial nerve inferior ganglion" EXACT [FMA:53475] -synonym: "petrosal ganglion" RELATED [MP:0001084] synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084] +synonym: "petrosal ganglion" RELATED [MP:0001084] synonym: "petrous ganglion" RELATED [http://en.wikipedia.org/wiki/File\:Gray791.png, http://en.wikipedia.org/wiki/Inferior_ganglion_of_glossopharyngeal_nerve, http://www.merriam-webster.com/medical/petrous%20ganglion] xref: EHDAA2:0000711 xref: EMAPA:17153 @@ -147126,7 +147690,6 @@ subset: pheno_slim synonym: "hippocampus granular layer" RELATED [] xref: EMAPA:35406 xref: MA:0000954 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002305 ! layer of hippocampus intersection_of: UBERON:0002305 ! layer of hippocampus intersection_of: composed_primarily_of CL:0001033 ! hippocampal granule cell @@ -147390,7 +147953,6 @@ xref: FMA:83146 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2122 xref: MA:0000946 xref: MBA:632 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002304 ! layer of dentate gyrus intersection_of: UBERON:0002304 ! layer of dentate gyrus intersection_of: immediately_deep_to UBERON:0004679 ! dentate gyrus molecular layer @@ -147522,7 +148084,6 @@ xref: MESH:D009831 xref: NCIT:C33205 xref: Olfactory:mucosa xref: UMLS:C0028937 {source="ncithesaurus:Olfactory_Mucosa"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001826 ! nasal cavity mucosa intersection_of: UBERON:0001826 ! nasal cavity mucosa intersection_of: has_part UBERON:0001997 ! olfactory epithelium @@ -147555,6 +148116,7 @@ name: photoreceptor array def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165] synonym: "light-sensitive tissue" EXACT [] xref: FBbt:00004200 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer intersection_of: UBERON:0004923 ! organ component layer intersection_of: composed_primarily_of CL:0000210 ! photoreceptor cell @@ -147603,7 +148165,6 @@ xref: NCIT:C33137 xref: NLXANAT:090807 xref: PBA:294021786 xref: UMLS:C1709063 {source="ncithesaurus:Molecular_Layer"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0014935 {source="NBK10047"} ! cerebral cortex marginal layer @@ -147635,7 +148196,6 @@ xref: NCIT:C32557 xref: NLXANAT:090808 xref: PBA:294021800 xref: UMLS:C1517039 {source="ncithesaurus:External_Granular_Layer"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: immediately_deep_to UBERON:0005390 ! cortical layer I @@ -147670,7 +148230,6 @@ xref: NCIT:C32571 xref: NLXANAT:090809 xref: PBA:294021824 xref: UMLS:C1517046 {source="ncithesaurus:External_Pyramidal_Cell_Layer"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: has_part CL:0000598 ! pyramidal neuron @@ -147703,7 +148262,6 @@ xref: NCIT:C32844 xref: NLXANAT:090810 xref: PBA:294021852 xref: UMLS:C1512872 {source="ncithesaurus:Internal_Granular_Layer"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: immediately_deep_to UBERON:0005392 ! cortical layer III @@ -147743,7 +148301,6 @@ xref: NCIT:C32653 xref: NLXANAT:090811 xref: PBA:294021878 xref: UMLS:C1517447 {source="ncithesaurus:Ganglionic_Layer"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0005343 {source="BRAINSPAN"} ! cortical plate relationship: has_part CL:0000598 ! pyramidal neuron @@ -147914,8 +148471,8 @@ xref: http://en.wikipedia.org/wiki/Philtrum xref: http://www.snomedbrowser.com/Codes/Details/362087004 xref: MA:0001577 xref: VHOG:0000862 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0001834 ! upper lip relationship: develops_from UBERON:0004068 {source="Wikipedia"} ! medial nasal prominence relationship: has_quality PATO:0000588 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! vestigial @@ -148135,6 +148692,7 @@ xref: TAO:0001284 xref: VHOG:0000655 xref: XAO:0000474 xref: ZFA:0001284 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 {source="ZFA"} ! surface groove disjoint_from: UBERON:0005745 ! optic foramen relationship: located_in UBERON:0003098 {source="EHDAA2"} ! optic stalk @@ -148319,7 +148877,6 @@ xref: TAO:0000085 xref: TAO:0000736 xref: VHOG:0001064 xref: ZFA:0000085 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: part_of UBERON:0005419 ! pectoral appendage bud @@ -148344,7 +148901,6 @@ xref: EMAPA:16892 xref: TAO:0001385 xref: VHOG:0001066 xref: ZFA:0001385 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004356 ! apical ectodermal ridge intersection_of: UBERON:0004356 ! apical ectodermal ridge intersection_of: part_of UBERON:0005420 ! pelvic appendage bud @@ -148386,6 +148942,7 @@ xref: TAO:0000064 xref: VHOG:0000492 xref: ZFA:0000064 is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0010312 ! immature eye intersection_of: UBERON:0006598 ! presumptive structure intersection_of: has_potential_to_develop_into UBERON:0001782 ! pigmented layer of retina relationship: has_potential_to_develop_into UBERON:0001782 ! pigmented layer of retina @@ -148411,6 +148968,7 @@ xref: TAO:0001071 xref: VHOG:0000490 xref: ZFA:0001071 is_a: UBERON:0006598 ! presumptive structure +is_a: UBERON:0010312 ! immature eye intersection_of: UBERON:0006598 ! presumptive structure intersection_of: has_potential_to_develop_into UBERON:0003902 ! retinal neural layer relationship: has_potential_to_develop_into UBERON:0003902 ! retinal neural layer @@ -148448,6 +149006,7 @@ xref: TAO:0002188 xref: ZFA:0001688 is_a: UBERON:0000479 {source="ZFA"} ! tissue is_a: UBERON:0001048 {source="Obol"} ! primordium +is_a: UBERON:0010312 ! immature eye is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0002342 ! neural crest relationship: part_of UBERON:0000019 {source="ZFA"} ! camera-type eye @@ -148466,6 +149025,7 @@ xref: TAO:0000818 xref: VHOG:0001208 xref: XAO:0004191 xref: ZFA:0000818 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest @@ -148506,7 +149066,6 @@ xref: EHDAA2:0000124 xref: EHDAA:6669 xref: FMA:55142 xref: http://www.snomedbrowser.com/Codes/Details/362474000 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0001021 ! nerve relationship: develops_from UBERON:0001650 {source="EHDAA2"} ! hypoglossal nerve @@ -148606,7 +149165,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0008840 xref: http://www.snomedbrowser.com/Codes/Details/279088007 xref: NCIT:C34126 xref: UMLS:C0008840 {source="ncithesaurus:Chyle_Cistern"} -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009856 ! sac is_a: UBERON:0034944 ! zone of organ relationship: develops_from UBERON:0036260 ! embryonic cisterna chyli @@ -148685,6 +149244,7 @@ xref: EHDAA:218 xref: EMAPA:16070 xref: FMA:85519 xref: VHOG:0000751 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000925 ! endoderm @@ -148823,6 +149383,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1629 xref: http://www.snomedbrowser.com/Codes/Details/361344005 xref: VHOG:0000547 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002240 ! spinal cord [Term] @@ -148867,6 +149428,7 @@ xref: FMA:53154 xref: Foramen:rotundum xref: http://www.snomedbrowser.com/Codes/Details/369439002 xref: VHOG:0001543 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0000377 ! maxillary nerve @@ -148910,7 +149472,6 @@ xref: UMLS:C0230259 {source="ncithesaurus:Greater_Omentum"} xref: VHOG:0000356 is_a: CARO:0000003 is_a: UBERON:0003688 ! omentum -is_a: UBERON:0004120 ! mesoderm-derived structure relationship: attaches_to UBERON:0001164 ! greater curvature of stomach relationship: develops_from UBERON:0002296 {source="Wikipedia"} ! dorsal mesentery relationship: develops_from UBERON:0005602 {source="Wikipedia"} ! dorsal mesogastrium @@ -148986,7 +149547,7 @@ synonym: "lamina hepatica" EXACT [FMA:14655] synonym: "liver cell plate" EXACT [FMA:14655] xref: EMAPA:37880 {source="MA:th"} xref: FMA:14655 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004923 ! organ component layer relationship: adjacent_to UBERON:0001281 ! hepatic sinusoid relationship: composed_primarily_of CL:0000182 {source="FMA"} ! hepatocyte @@ -149069,6 +149630,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/277708006 xref: RETIRED_EHDAA2:0000884 xref: VHOG:0000790 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove relationship: part_of UBERON:0002082 ! cardiac ventricle @@ -149174,6 +149736,7 @@ xref: http://en.wikipedia.org/wiki/Levator_scapulae_muscle xref: http://www.snomedbrowser.com/Codes/Details/279236008 is_a: UBERON:0001482 ! muscle of shoulder is_a: UBERON:0003897 ! axial muscle +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004518 ! muscle of vertebral column is_a: UBERON:0034908 ! scapular muscle intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -149237,6 +149800,7 @@ xref: NCIT:C33642 xref: Subcapsular:sinus xref: UMLS:C1518051 {source="ncithesaurus:Lymph_Node_Sinus"} xref: UMLS:C1518052 {source="ncithesaurus:Lymph_Node_Subcapsular_Sinus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002006 ! cortex of lymph node @@ -149459,6 +150023,7 @@ synonym: "sulcus limitans" BROAD [] xref: BAMS:slim xref: BAMS:slm xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=629 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove disjoint_from: UBERON:0009573 ! sulcus limitans of fourth ventricle relationship: part_of UBERON:0005496 {source="EHDAA2"} ! neural tube lateral wall @@ -149539,6 +150104,7 @@ synonym: "lateral lobe of thymus" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "lobe of thymus" EXACT [FMA:71193] xref: FMA:71193 xref: RETIRED_EHDAA2:0002021 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0009912 ! anatomical lobe is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0009912 ! anatomical lobe @@ -149610,6 +150176,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/54944003 xref: MA:0002113 xref: NCIT:C102627 xref: VHOG:0001004 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006615 ! venous sinus intersection_of: UBERON:0006615 ! venous sinus intersection_of: located_in UBERON:0002363 ! dura mater @@ -149723,6 +150290,7 @@ xref: VHOG:0000232 xref: XAO:0004154 xref: ZFA:0005046 is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000922 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! embryo relationship: part_of UBERON:0002203 {source="ZFA-modified"} ! vasculature of eye @@ -149796,7 +150364,7 @@ xref: EMAPA:16166 xref: TAO:0001435 xref: VHOG:0000513 xref: ZFA:0001435 -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001049 ! neural tube [Term] @@ -150040,6 +150608,7 @@ xref: TAO:0000785 xref: VHOG:0000023 xref: ZFA:0000785 is_a: UBERON:0005496 ! neural tube lateral wall +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -150097,7 +150666,7 @@ xref: TAO:0000080 xref: VHOG:0000269 xref: ZFA:0000080 is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest -is_a: UBERON:0005253 ! head mesenchyme +is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007530 {source="EHDAA2"} ! migrating mesenchyme population relationship: part_of UBERON:0007213 {source="EHDAA2"} ! mesenchyme derived from head neural crest @@ -150654,6 +151223,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279758009 xref: MA:0001210 xref: VHOG:0001344 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001856 ! semicircular duct [Term] @@ -150724,6 +151294,7 @@ xref: EMAPA:17302 xref: FMA:312291 xref: MA:0000272 xref: VHOG:0001477 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity is_a: UBERON:0012467 ! enclosed anatomical space relationship: has_quality PATO:0000608 ! closed @@ -150958,8 +151529,8 @@ xref: EMAPA:17362 xref: FMA:295948 xref: MA:0001581 xref: VHOG:0000378 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0005868 {source="cjm"} ! maxillary prominence relationship: part_of UBERON:0003277 {source="EHDAA2"} ! skeleton of upper jaw @@ -150985,8 +151556,8 @@ xref: NCIT:C34264 xref: Primary:palate xref: UMLS:C1268540 {source="ncithesaurus:Primary_Palate"} xref: VHOG:0000362 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007375 ! roof of mouth +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0007238 {source="EHDAA2-abduced"} ! 1st arch maxillary component relationship: develops_from UBERON:0009714 {source="http://www.indiana.edu/~anat550/hnanim/face/face.html", source="Wikipedia"} ! intermaxillary process relationship: part_of UBERON:0002244 {notes="consider reversing", source="VHOG"} ! premaxilla @@ -151009,6 +151580,7 @@ xref: Rhomboid:muscles xref: VHOG:0001391 is_a: CARO:0000003 is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: develops_from UBERON:0010985 {source="EHDAA2"} ! rhomboid pre-muscle mass relationship: has_muscle_antagonist UBERON:0001125 {source="dbpedia"} ! serratus ventralis relationship: has_muscle_origin UBERON:0000351 {notes="nuchal ligaments spinous processes of the C7 to T5 vertebrae", source="dbpedia"} ! nuchal ligament @@ -151150,6 +151722,7 @@ def: "Intrinsic membrane that arises from embryonic germ layers and grow to surr xref: EHDAA2:0004714 xref: FMA:305915 xref: http://www.snomedbrowser.com/Codes/Details/362840007 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0004716 ! conceptus relationship: part_of UBERON:0016887 ! entire extraembryonic component @@ -151223,6 +151796,7 @@ name: ultimobranchial body epithelium def: "An epithelium that is part of a ultimobranchial body." [OBOL:automatic] xref: EHDAA2:0002105 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003092 ! ultimobranchial body relationship: part_of UBERON:0003092 ! ultimobranchial body @@ -151366,7 +151940,7 @@ def: "A dental epithelium that is part of a upper jaw molar." [OBOL:automatic] xref: EHDAA2:0002126 xref: EMAPA:17943 is_a: UBERON:0003235 ! epithelium of upper jaw -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015839 ! molar epithelium intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003666 ! upper jaw molar @@ -151380,7 +151954,7 @@ def: "A dental epithelium that is part of a lower jaw molar." [OBOL:automatic] xref: EHDAA2:0001026 xref: EMAPA:17922 is_a: UBERON:0003236 ! epithelium of lower jaw -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0015839 ! molar epithelium intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003667 ! lower jaw molar @@ -151431,6 +152005,8 @@ xref: EMAPA:17363 xref: FMA:312465 xref: VHOG:0001040 is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005619 ! secondary palatal shelf relationship: part_of UBERON:0005619 ! secondary palatal shelf @@ -151443,8 +152019,9 @@ xref: EHDAA2:0001500 xref: EMAPA:17643 xref: FMA:313406 xref: VHOG:0001025 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003235 ! epithelium of upper jaw +is_a: UBERON:0010313 ! neural crest-derived structure +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0005620 ! primary palate relationship: develops_from UBERON:0012312 {source="EHDAA2"} ! maxillary process ectoderm @@ -151551,7 +152128,6 @@ id: UBERON:0005667 name: connecting stalk mesoderm xref: EHDAA2:0000314 is_a: UBERON:0003422 ! mesenchyme of umbilical cord -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm relationship: part_of UBERON:0002331 {source="EHDAA2"} ! umbilical cord @@ -151604,6 +152180,7 @@ id: UBERON:0005672 name: right lung endothelium def: "An endothelium that is part of a right lung." [OBOL:automatic] xref: EHDAA2:0001755 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003364 ! epithelium of right lung intersection_of: UBERON:0001986 ! endothelium @@ -151615,6 +152192,7 @@ id: UBERON:0005673 name: left lung endothelium def: "An endothelium that is part of a left lung." [OBOL:automatic] xref: EHDAA2:0000961 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001986 ! endothelium is_a: UBERON:0003365 ! epithelium of left lung intersection_of: UBERON:0001986 ! endothelium @@ -151764,6 +152342,7 @@ is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -151781,6 +152360,7 @@ synonym: "lens cavity" BROAD [EHDAA2:0000986] xref: EHDAA2:0000986 xref: EMAPA:17164 xref: VHOG:0000531 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0005426 ! lens vesicle @@ -152009,6 +152589,7 @@ xref: EHDAA:9287 xref: EMAPA:17364 xref: VHOG:0001063 is_a: UBERON:0003323 ! mesenchyme of upper jaw +is_a: UBERON:0014387 ! mesenchyme derived from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0005619 ! secondary palatal shelf relationship: part_of UBERON:0005619 ! secondary palatal shelf @@ -152079,7 +152660,7 @@ xref: EMAPA:17940 is_a: UBERON:0003235 ! epithelium of upper jaw is_a: UBERON:0003355 ! epithelium of incisor is_a: UBERON:0003843 ! dental epithelium -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003450 ! upper jaw incisor relationship: develops_from UBERON:0011642 ! oral epithelium from ectoderm @@ -152094,7 +152675,7 @@ xref: EMAPA:17919 is_a: UBERON:0003236 ! epithelium of lower jaw is_a: UBERON:0003355 ! epithelium of incisor is_a: UBERON:0003843 ! dental epithelium -is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003843 ! dental epithelium intersection_of: part_of UBERON:0003451 ! lower jaw incisor relationship: develops_from UBERON:0011642 ! oral epithelium from ectoderm @@ -152153,7 +152734,9 @@ synonym: "rhombencephalon venous system" RELATED [VHOG:0001322] xref: EHDAA2:0000776 xref: EMAPA:18632 xref: VHOG:0001322 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004582 ! venous system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0004582 ! venous system intersection_of: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002028 ! hindbrain @@ -152175,6 +152758,7 @@ xref: VHOG:0001239 xref: XAO:0000264 xref: ZFA:0000067 is_a: UBERON:0000926 ! mesoderm +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006598 ! presumptive structure intersection_of: UBERON:0000926 ! mesoderm intersection_of: has_potential_to_develop_into UBERON:0002120 ! pronephros @@ -152207,7 +152791,6 @@ xref: TAO:0000890 xref: VHOG:0000787 xref: XAO:0000306 xref: ZFA:0000890 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001948 ! regional part of spinal cord is_a: UBERON:0003306 ! floor plate of neural tube intersection_of: UBERON:0000481 ! multi-tissue structure @@ -152230,6 +152813,7 @@ xref: TAO:0001177 xref: VHOG:0000777 xref: XAO:0000022 xref: ZFA:0001177 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0002240 ! spinal cord @@ -152401,6 +152985,7 @@ comment: the primary reason this term is manifest in uberon to disambiguate from synonym: "tunica externa" RELATED SENSU [ZFA:0001700] xref: TAO:0002245 xref: ZFA:0001700 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005742 ! adventitia relationship: part_of UBERON:0006860 ! swim bladder @@ -152412,6 +152997,7 @@ comment: the primary reason this term is manifest in uberon to disambiguate from synonym: "tunica interna" EXACT [ZFA:0001701] xref: TAO:0002246 xref: ZFA:0001701 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005742 ! adventitia relationship: part_of UBERON:0006860 ! swim bladder @@ -152500,6 +153086,8 @@ xref: Optic:canal xref: TAO:0002025 xref: VHOG:0001408 xref: ZFA:0005428 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0013685 ! foramen of skull @@ -152614,6 +153202,7 @@ synonym: "caudal portion of nephrogenic cord" EXACT [OBOL:automatic] synonym: "caudal region of nephrogenic cord" EXACT [OBOL:automatic] synonym: "rear part of nephrogenic cord" EXACT [OBOL:automatic] synonym: "rear portion of nephrogenic cord" EXACT [http://en.wikipedia.org/wiki/Metanephros#Metanephros] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004875 ! nephrogenic cord @@ -152622,6 +153211,7 @@ relationship: part_of UBERON:0004875 ! nephrogenic cord id: UBERON:0005754 name: rostral part of nephrogenic cord def: "The initial renal anlage that develops from the most rostral part of the nephrogenic cord is termed the pronephros." [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004875 ! nephrogenic cord @@ -152703,6 +153293,7 @@ xref: NCIT:C32683 xref: TAO:0005285 xref: UMLS:C0599297 {source="ncithesaurus:Glomerular_Basement_Membrane"} xref: ZFA:0005285 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0000074 ! renal glomerulus @@ -152725,6 +153316,7 @@ xref: NCIT:C32916 xref: TAO:0005286 xref: UMLS:C1235665 {source="ncithesaurus:Lamina_Densa"} xref: ZFA:0005286 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005764 ! acellular membrane intersection_of: UBERON:0005764 ! acellular membrane intersection_of: adjacent_to UBERON:0005788 ! lamina rara interna @@ -152749,6 +153341,7 @@ xref: TAO:0005287 xref: UMLS:C1517719 {source="ncithesaurus:Lamina_Rara_Interna"} xref: ZFA:0005287 is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: adjacent_to UBERON:0001230 ! glomerular capsule intersection_of: part_of UBERON:0005777 ! glomerular basement membrane @@ -152769,6 +153362,7 @@ xref: TAO:0005288 xref: UMLS:C1517718 {source="ncithesaurus:Lamina_Rara_Externa"} xref: ZFA:0005288 is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: adjacent_to UBERON:0001286 ! Bowman's space intersection_of: part_of UBERON:0005777 ! glomerular basement membrane @@ -152838,6 +153432,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0506947 xref: http://www.snomedbrowser.com/Codes/Details/119203005 xref: NCIT:C34027 xref: UMLS:C0506947 {source="ncithesaurus:Aortic_Segment"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0000947 ! aorta @@ -152893,6 +153488,7 @@ synonym: "RVLM" EXACT ABBREVIATION [] xref: BTO:0002778 xref: http://en.wikipedia.org/wiki/Rostral_ventrolateral_medulla is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of GO:0008217 {source="Wikipedia"} ! regulation of blood pressure relationship: part_of UBERON:0001896 ! medulla oblongata @@ -152934,6 +153530,7 @@ synonym: "ventral tubercle of atlas" EXACT [MP:0010731] xref: FMA:23991 xref: http://www.snomedbrowser.com/Codes/Details/281224005 xref: MA:0002871 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0005814 ! arch of atlas @@ -152973,6 +153570,7 @@ synonym: "anterior tubercle of cervical vertebra" EXACT [FMA:24126] synonym: "tuberculum cervicales anterius vertebrae" EXACT LATIN [FMA:24126, FMA:TA] xref: FMA:24126 xref: http://en.wikipedia.org/wiki/Anterior_tubercle_of_cervical_vertebra +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection disjoint_from: UBERON:0005816 {source="lexical"} ! posterior tubercle of transverse process of cervical vertebra @@ -152987,6 +153585,7 @@ synonym: "posterior tubercle of cervical vertebra" EXACT [FMA:24128] synonym: "tuberculum cervicales posterius vertebrae" EXACT LATIN [FMA:24128, FMA:TA] xref: FMA:24128 xref: http://en.wikipedia.org/wiki/Posterior_tubercle_of_cervical_vertebra +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002413 ! cervical vertebra @@ -152997,6 +153596,7 @@ name: neuraxis flexure def: "An anatomical structure that is regional part of the central nervous system where there is a significant bend of the axis." [ZFIN:Curator] xref: ZFA:0005593 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_quality PATO:0000406 ! curved relationship: part_of UBERON:0016879 ! future central nervous system @@ -153517,6 +154117,7 @@ synonym: "processus maxillaris conchae nasalis inferioris" EXACT LATIN [FMA:5474 xref: FMA:54741 xref: http://en.wikipedia.org/wiki/Maxillary_process_of_inferior_nasal_concha is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] @@ -153560,6 +154161,7 @@ xref: EMAPA:37932 {source="MA:th"} xref: FMA:52896 xref: http://en.wikipedia.org/wiki/Palatine_process_of_maxilla xref: http://www.snomedbrowser.com/Codes/Details/368870009 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: part_of UBERON:0012074 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! bony part of hard palate @@ -153729,6 +154331,7 @@ synonym: "lamina dorsolateralis" RELATED LATIN [http://en.wikipedia.org/wiki/Ala synonym: "sensory part of neural tube" RELATED [] xref: Alar:plate xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1370 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: dorsal_to UBERON:0005478 ! sulcus limitans of neural tube relationship: has_part CL:0000101 ! sensory neuron @@ -153828,7 +154431,6 @@ synonym: "mesonephric straight distal segment" RELATED [XAO:0000333] synonym: "straight distal segment" RELATED [XAO:0000333] xref: AAO:0010391 xref: XAO:0000333 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000083 ! mesonephric tubule relationship: develops_from UBERON:0005322 ! mesonephric nephron @@ -153863,7 +154465,6 @@ xref: FBbt:00004640 xref: MAT:0000095 xref: MIAA:0000095 xref: TGMA:0000164 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc @@ -153960,6 +154561,7 @@ xref: FMA:19473 xref: http://en.wikipedia.org/wiki/Excretory_duct_of_seminal_gland xref: http://www.snomedbrowser.com/Codes/Details/279675008 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000998 ! seminal vesicle @@ -153990,6 +154592,7 @@ xref: FBbt:00004522 xref: HAO:0000456 xref: http://en.wikipedia.org/wiki/Labrum_(arthropod_mouthpart) xref: TADS:0000039 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0000165 ! mouth @@ -154018,6 +154621,7 @@ synonym: "subbrillar sac" NARROW [NCBITaxon:8570] xref: EMAPA:18233 xref: FMA:20291 xref: http://www.snomedbrowser.com/Codes/Details/362531001 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005906 {source="FMA"} ! serous sac relationship: adjacent_to UBERON:0001801 {modified_from="MA"} ! anterior segment of eyeball relationship: part_of UBERON:0000019 {source="FMA"} ! camera-type eye @@ -154147,6 +154751,7 @@ synonym: "processus ethmoidalis conchae nasalis inferioris" RELATED LATIN [http: xref: FMA:54742 xref: http://en.wikipedia.org/wiki/Ethmoid_boneal_process_of_inferior_nasal_concha is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0005922 ! inferior nasal concha [Term] @@ -154181,6 +154786,7 @@ xref: XAO:0003033 xref: ZFA:0000550 is_a: UBERON:0000003 ! naris is_a: UBERON:0003102 {source="ZFA"} ! surface structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000003 ! naris intersection_of: connects UBERON:0001707 ! nasal cavity intersection_of: connects UBERON:0013514 ! space surrounding organism @@ -154199,6 +154805,7 @@ xref: EMAPA:17851 xref: FMA:295944 xref: MA:0001322 is_a: UBERON:0000003 ! naris +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005928 ! external naris @@ -154218,6 +154825,8 @@ xref: MA:0000161 xref: NCIT:C32706 xref: UMLS:C0221962 {source="ncithesaurus:Hair_Bulb"} is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002073 ! hair follicle [Term] @@ -154227,6 +154836,8 @@ xref: EMAPA:18772 xref: FMA:294628 xref: MA:0000162 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005932 ! bulb of hair follicle [Term] @@ -154243,7 +154854,6 @@ xref: BTO:0003971 xref: EMAPA:32792 xref: FMA:70935 xref: MA:0000779 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005933 ! hair root sheath relationship: has_part CL:0000312 ! keratinocyte @@ -154276,6 +154886,8 @@ xref: EMAPA:35390 xref: FMA:294634 xref: MA:0000781 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005933 ! hair root sheath [Term] @@ -154355,7 +154967,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C1881209 xref: http://www.snomedbrowser.com/Codes/Details/244379003 xref: NCIT:C61368 xref: UMLS:C1881209 {source="ncithesaurus:Infundibulum"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005337 ! outflow tract of ventricle intersection_of: UBERON:0005337 ! outflow tract of ventricle intersection_of: part_of UBERON:0002080 ! heart right ventricle @@ -154444,6 +155055,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/319522000 xref: MA:0003016 xref: NCIT:C32708 xref: UMLS:C0221973 {source="ncithesaurus:Hair_Follicle_Infundibulum"} +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0002073 ! hair follicle @@ -154486,8 +155099,8 @@ xref: MESH:D014129 xref: NCIT:C12803 xref: Trabecular:meshwork xref: UMLS:C0040573 {source="ncithesaurus:Trabecular_Meshwork"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure disjoint_from: UBERON:0006205 ! pectineal ligament relationship: has_part CL:0002367 ! trabecular meshwork cell relationship: part_of UBERON:0000019 ! camera-type eye @@ -154514,7 +155127,6 @@ def: "A sheet of somatopleure that grows upward over the embryo and eventually m subset: pheno_slim synonym: "amnionic fold" EXACT [http://placentation.ucsd.edu/glossfs.html] xref: EMAPA:16076 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: develops_from UBERON:0004874 {source="ISBN:0073040584"} ! somatopleure relationship: only_in_taxon NCBITaxon:32524 ! Amniota @@ -154525,6 +155137,7 @@ name: tunnel of Corti def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151] subset: pheno_slim xref: EMAPA:37976 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002227 ! spiral organ of cochlea @@ -154533,6 +155146,7 @@ id: UBERON:0005973 name: blood-inner ear barrier def: "The function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier." [MP:0004999] is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -154566,6 +155180,7 @@ xref: BTO:0004904 xref: EMAPA:37876 {source="MA:th"} xref: FMA:70735 is_a: UBERON:0010188 ! protuberance +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019204 ! skin epithelium relationship: part_of UBERON:0002073 ! hair follicle @@ -154676,6 +155291,7 @@ xref: EMAPA:37837 {source="MA:th"} xref: FMA:9236 xref: http://www.snomedbrowser.com/Codes/Details/277693004 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium @@ -154696,6 +155312,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/277718001 xref: Musculi:pectinati xref: ZFA:0005809 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002302 ! myocardium of atrium relationship: part_of UBERON:0002302 ! myocardium of atrium @@ -154708,6 +155325,7 @@ synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246] synonym: "posterior right atrial cavity" EXACT [FMA:13246] synonym: "sinus venarum cavarum" EXACT [FMA:13246] xref: FMA:13246 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: contributes_to_morphology_of UBERON:0002078 ! right cardiac atrium relationship: part_of UBERON:0002078 ! right cardiac atrium @@ -154831,6 +155449,7 @@ synonym: "trabecular layer of the atrium" EXACT [ZFA:0005810] xref: EMAPA:37432 {source="MA:th"} xref: ZFA:0005810 is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002302 ! myocardium of atrium relationship: contributes_to_morphology_of UBERON:0002302 ! myocardium of atrium @@ -154885,6 +155504,7 @@ synonym: "fibrous ring of aortic valve" EXACT [FMA:9502] xref: EMAPA:37418 {source="MA:th"} xref: FMA:9502 is_a: UBERON:0006008 ! fibrous ring of heart +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002137 ! aortic valve relationship: contributes_to_morphology_of UBERON:0002137 ! aortic valve @@ -154919,6 +155539,7 @@ synonym: "pulmonary valvar anulus" EXACT [FMA:9503] xref: EMAPA:37420 {source="MA:th"} xref: FMA:9503 is_a: UBERON:0006008 ! fibrous ring of heart +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002146 ! pulmonary valve relationship: contributes_to_morphology_of UBERON:0002146 ! pulmonary valve @@ -154942,6 +155563,7 @@ xref: NCIT:C32307 xref: UMLS:C0008484 {source="ncithesaurus:Chordae_Tendineae"} is_a: CARO:0000003 is_a: UBERON:0005983 ! heart layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: attaches_to UBERON:0005484 {source="FMA-abduced"} ! tricuspid valve leaflet relationship: contributes_to_morphology_of UBERON:0002133 ! atrioventricular valve relationship: part_of UBERON:0002133 ! atrioventricular valve @@ -154961,6 +155583,7 @@ xref: FMA:9498 xref: Mitral:annulus is_a: CARO:0000003 is_a: UBERON:0006008 ! fibrous ring of heart +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: attaches_to UBERON:0005996 ! mitral valve cusp intersection_of: part_of UBERON:0002135 ! mitral valve @@ -154991,6 +155614,7 @@ synonym: "tricuspid valvar anulus" EXACT [FMA:9500] xref: EMAPA:37421 {source="MA:th"} xref: FMA:9500 is_a: UBERON:0006008 ! fibrous ring of heart +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006008 ! fibrous ring of heart intersection_of: part_of UBERON:0002134 ! tricuspid valve relationship: contributes_to_morphology_of UBERON:0002134 ! tricuspid valve @@ -155060,6 +155684,7 @@ synonym: "lower part of bulb of hair follicle" EXACT [FMA:70772] synonym: "lower zone of bulb of hair follicle" EXACT [FMA:70772] xref: EMAPA:37878 {source="MA:th"} xref: FMA:70772 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019204 ! skin epithelium relationship: adjacent_to UBERON:0000412 ! dermal papilla relationship: contributes_to_morphology_of UBERON:0005932 ! bulb of hair follicle @@ -155078,6 +155703,7 @@ xref: FMA:70723 xref: http://linkedlifedata.com/resource/umls/id/C1182701 xref: NCIT:C32709 xref: UMLS:C1182701 {source="ncithesaurus:Hair_Follicle_Isthmus"} +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0019204 ! skin epithelium relationship: part_of UBERON:0002073 ! hair follicle @@ -155088,6 +155714,8 @@ def: "The posterior border of the optic nerve foramen." [MP:0010705] subset: pheno_slim synonym: "postoptic pillar" EXACT [ISBN:978-0226870137] xref: EMAPA:37908 {source="MA:th"} +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen @@ -155105,6 +155733,8 @@ xref: DHBA:12659 xref: EMAPA:36557 xref: MA:0002577 xref: Pre-botzinger:complex +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster relationship: composed_primarily_of CL:0000099 ! interneuron relationship: continuous_with UBERON:0000011 ! parasympathetic nervous system @@ -155128,6 +155758,7 @@ xref: EMAPA:37422 {source="MA:th"} xref: FMA:9497 xref: http://en.wikipedia.org/wiki/Fibrous_rings_of_heart is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006444 ! annulus fibrosus intersection_of: UBERON:0006444 ! annulus fibrosus intersection_of: part_of UBERON:0000948 ! heart @@ -155149,6 +155780,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/30822008 xref: NCIT:C33849 xref: UMLS:C0225923 {source="ncithesaurus:Cardiac_Valve_Cusp"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000946 ! cardial valve [Term] @@ -155164,7 +155797,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/362506002 xref: Hyaloid:canal is_a: UBERON:0004111 ! anatomical conduit is_a: UBERON:0004120 ! mesoderm-derived structure -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0002270 {source="Wikipedia"} ! hyaloid artery relationship: located_in UBERON:0001798 ! vitreous body relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball @@ -155538,7 +156171,6 @@ id: UBERON:0006058 name: multi-limb segment region def: "A collection of two or more connected limb segments. Examples: arm (comprising stylopod and zeugopod regions)." [https://orcid.org/0000-0002-6601-2165] subset: non_informative -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010758 ! subdivision of organism along appendicular axis relationship: has_part UBERON:0002529 ! limb segment @@ -155556,9 +156188,9 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228120 xref: http://www.snomedbrowser.com/Codes/Details/279275004 xref: NCIT:C12890 xref: UMLS:C0228120 {source="ncithesaurus:Falx_Cerebri"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part -relationship: develops_from UBERON:0000922 ! embryo +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010090 ! future falx cerebri relationship: immediate_transformation_of UBERON:0010090 {evidence="definitional"} ! future falx cerebri relationship: part_of UBERON:0002363 ! dura mater @@ -155573,6 +156205,7 @@ synonym: "cardiac conotruncus" EXACT [] synonym: "rostral half of bulbus cordis" EXACT [EMAPA:16221] xref: EMAPA:16338 xref: VHOG:0000437 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004706 ! bulbus cordis @@ -155587,6 +156220,7 @@ xref: AAO:0000739 xref: FMA:24530 xref: NCIT:C116112 xref: Structure_of_individual_vertebrae +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002412 ! vertebra @@ -155618,7 +156252,6 @@ name: cartilaginous neural arch def: "One of the cartilaginous structures surrounding the embryonic spinal cord, formed by the dorsal growth of the dorsolateral arcualia; it is the primordium of the vertebral arch." [BTO:0001763] synonym: "neural arch primordium" RELATED [] xref: BTO:0001763 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010358 ! arch of centrum of vertebra relationship: has_part UBERON:0002418 ! cartilage tissue relationship: part_of UBERON:0000922 ! embryo @@ -155820,6 +156453,7 @@ synonym: "vertebral region" RELATED [] synonym: "vertebral series" EXACT [] synonym: "vertebral subdivision" RELATED [] xref: FMA:16201 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: subdivision_of UBERON:0001130 ! vertebral column @@ -155865,6 +156499,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245391004 xref: NCIT:C32648 xref: UMLS:C0227544 {source="ncithesaurus:Gallbladder_Fundus"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002110 ! gall bladder [Term] @@ -155891,8 +156526,8 @@ xref: MA:0001694 xref: NCIT:C48939 xref: UMLS:C0447584 {source="ncithesaurus:Bladder_Fundus"} xref: VHOG:0001184 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001255 ! urinary bladder relationship: develops_from UBERON:0005760 {source="EHDAA2-modified"} ! urorectal septum relationship: develops_from UBERON:0009845 {source="EHDAA2"} ! urogenital sinus mesenchyme @@ -155921,6 +156556,7 @@ xref: NLXANAT:1005006 xref: PBA:128012080 xref: Perirhinal:cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0001893 ! telencephalon @@ -156012,6 +156648,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0152304 xref: http://www.snomedbrowser.com/Codes/Details/362336007 xref: UMLS:C0152304 {source="BIRNLEX:1194"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 ! parietal lobe [Term] @@ -156085,6 +156723,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0152283 xref: http://www.snomedbrowser.com/Codes/Details/362315005 xref: UMLS:C0152283 {source="BIRNLEX:1292"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002285 ! telencephalic ventricle [Term] @@ -156166,6 +156806,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0152303 xref: http://www.snomedbrowser.com/Codes/Details/279168006 xref: UMLS:C0152303 {source="BIRNLEX:1450"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex @@ -156263,8 +156905,8 @@ xref: BAMS:BG xref: BAMS:BNC xref: BIRNLEX:1629 xref: EV:0100182 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:1629"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 xref: http://linkedlifedata.com/resource/umls/id/C0004781 xref: UMLS:C0004781 {source="BIRNLEX:1629"} is_a: UBERON:0007245 ! nuclear complex of neuraxis @@ -156423,6 +157065,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279779009 xref: MA:0003176 xref: UMLS:C0009198 {source="BIRNLEX:2553"} xref: UMLS:C0458767 {source="BIRNLEX:2553"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001844 ! cochlea @@ -156578,8 +157221,8 @@ synonym: "fibrae nervi accessorius" RELATED LATIN [NeuroNames:792] xref: BAMS:11nf xref: BIRNLEX:916 xref: FMA:72626 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"} xref: http://linkedlifedata.com/resource/umls/id/C0175549 xref: UMLS:C0175549 {source="BIRNLEX:916"} is_a: UBERON:0000122 ! neuron projection bundle @@ -156728,6 +157371,7 @@ synonym: "regional part of diagonal band" EXACT [NLXANAT:20090302] xref: FMA:77610 xref: NLXANAT:20090302 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002741 {source="NIFSTD"} ! diagonal band of Broca @@ -156769,6 +157413,7 @@ xref: FMA:5914 xref: http://en.wikipedia.org/wiki/Nervous_system_fiber xref: http://www.snomedbrowser.com/Codes/Details/88545005 xref: MESH:A08.663.542 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure union_of: UBERON:0006135 ! myelinated nerve fiber union_of: UBERON:0006136 ! unmyelinated nerve fiber @@ -156987,6 +157632,7 @@ id: UBERON:0006170 name: mesonephric capsule def: "The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue." [GO:0061285, GOC:mtg_kidney_jan10, https://doi.org/10.1371/journal.pone.0099864] is_a: UBERON:0002015 ! kidney capsule +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0002015 ! kidney capsule intersection_of: part_of UBERON:0000080 ! mesonephros relationship: part_of UBERON:0000080 ! mesonephros @@ -156997,6 +157643,7 @@ name: renal sinus def: "A hollowed out area on the medial margin of the kidney. The renal sinus opens at the renal hilum; it contains the renal aa. and vv., major calyces and renal pelvis, perirenal fat." [http://anatomy.uams.edu/anatomyhtml/kidney.html] xref: FMA:15611 xref: http://www.snomedbrowser.com/Codes/Details/362222000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0002113 ! kidney @@ -157006,8 +157653,8 @@ name: rectal diverticulum def: "The rectal diverticulum is an outgrowth of the cloaca and links the pronephric kidney to the exterior." [GO:0039009] synonym: "rectal diverticula" RELATED PLURAL [XAO:0001015] xref: XAO:0001015 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: continuous_with UBERON:0000163 ! embryonic cloaca relationship: continuous_with UBERON:0002120 ! pronephros relationship: develops_from UBERON:0000163 ! embryonic cloaca @@ -157242,6 +157889,7 @@ synonym: "Vesalius' ligament" EXACT [FMA:19855] xref: FMA:19855 xref: http://www.snomedbrowser.com/Codes/Details/361900000 xref: Inguinal:ligament +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005172 ! abdomen element relationship: part_of UBERON:0005442 ! abdominal external oblique muscle @@ -157256,6 +157904,7 @@ synonym: "ligamentum pectineale" EXACT [FMA:20188] xref: FMA:20188 xref: http://www.snomedbrowser.com/Codes/Details/256661003 xref: Pectineal:ligament +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006204 ! inguinal ligament @@ -157267,6 +157916,7 @@ subset: pheno_slim synonym: "anterior chamber angle" EXACT [FMA:58577] xref: FMA:58577 xref: http://www.snomedbrowser.com/Codes/Details/244498000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000015 ! non-material anatomical boundary relationship: part_of UBERON:0003956 ! aqueous drainage system @@ -157288,6 +157938,7 @@ xref: EHDAA2:0000136 xref: EHDAA:2592 xref: EMAPA:16827 xref: VHOG:0000502 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004142 ! outflow tract septum intersection_of: UBERON:0002099 ! cardiac septum intersection_of: adjacent_to UBERON:0002333 ! pulmonary trunk @@ -157382,6 +158033,7 @@ xref: EHDAA2:0000195 xref: EHDAA:766 xref: EMAPA:16693 xref: VHOG:0001405 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000948 ! heart @@ -157469,6 +158121,7 @@ xref: EHDAA:5105 xref: EHDAA:6534 xref: EMAPA:16884 xref: RETIRED_EHDAA2:0000239 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0016566 {source="EHDAA2"} ! pit relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0008814 ! pharyngeal arch system @@ -157507,6 +158160,7 @@ subset: emapa_ehdaa2 xref: EHDAA:1267 xref: EMAPA:16342 xref: RETIRED_EHDAA2:0000268 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0002081 ! cardiac atrium @@ -157517,6 +158171,7 @@ subset: emapa_ehdaa2 xref: EHDAA2:0000340 xref: EHDAA:6002 xref: EMAPA:17749 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -157530,6 +158185,7 @@ xref: EHDAA:3476 xref: EMAPA:16901 xref: VHOG:0000808 is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: channel_for UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0003993 ! interventricular foramen of CNS @@ -157564,6 +158220,7 @@ xref: EHDAA:2945 xref: EMAPA:16704 xref: MA:0001570 xref: RETIRED_EHDAA2:0000412 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003283 ! mesentery of oesophagus @@ -157634,6 +158291,7 @@ xref: EHDAA:2925 xref: EMAPA:17845 is_a: UBERON:0003314 ! eye mesenchyme is_a: UBERON:0005865 ! pre-muscle condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm relationship: develops_from UBERON:0003314 {source="EHDAA2", source="ISBN:0781772214"} ! eye mesenchyme relationship: part_of UBERON:0003269 {source="EHDAA2"} ! skeletal muscle tissue of eye @@ -157709,6 +158367,7 @@ xref: EHDAA2:0000569 xref: EHDAA:526 xref: EMAPA:16363 xref: VHOG:0000291 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0001041 ! foregut @@ -157851,6 +158510,7 @@ synonym: "glossopharyngeal preganglion" RELATED [EMAPA:16661] xref: EHDAA:1479 xref: EMAPA:16661 xref: RETIRED_EHDAA2:0000713 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0001714 ! cranial ganglion @@ -157921,6 +158581,7 @@ xref: EMAPA:18029 xref: VHOG:0000964 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 ! pre-cartilage condensation +is_a: UBERON:0010377 ! mesenchyme from somatopleure is_a: UBERON:0015054 ! iliac endochondral element intersection_of: UBERON:0015054 ! iliac endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -157970,6 +158631,7 @@ is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007499 {source="EHDAA2"} ! epithelial sac is_a: UBERON:0010371 ! ecto-epithelium +is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0003309 {source="EHDAA2"} ! floor plate of diencephalon relationship: develops_from UBERON:0034876 {source="EHDAA2"} ! future neurohypophysis relationship: part_of UBERON:0002286 {source="EMAPA"} ! third ventricle @@ -158011,6 +158673,7 @@ xref: EHDAA:4761 xref: EMAPA:16676 xref: EMAPA:17170 xref: VHOG:0000534 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012467 {source="EHDAA2"} ! enclosed anatomical space relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000966 ! retina @@ -158044,6 +158707,7 @@ xref: EMAPA:18348 xref: VHOG:0000962 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0010377 ! mesenchyme from somatopleure is_a: UBERON:0015056 ! ischial endochondral element intersection_of: UBERON:0015056 ! ischial endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -158080,7 +158744,7 @@ xref: NCIT:C34198 xref: RETIRED_EHDAA2:0000909 xref: UMLS:C1283960 {source="ncithesaurus:Laryngotracheal_Tube"} xref: VHOG:0001404 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove relationship: has_potential_to_develop_into UBERON:0001737 ! larynx relationship: has_potential_to_develop_into UBERON:0003126 ! trachea @@ -158100,6 +158764,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1517769 xref: NCIT:C34201 xref: UMLS:C1517769 {source="ncithesaurus:Lens_Pit"} xref: VHOG:0000806 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0016566 {source="EHDAA2"} ! pit relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo @@ -158179,6 +158844,7 @@ xref: EHDAA:534 xref: EMAPA:16258 xref: RETIRED_EHDAA2:0001205 xref: VHOG:0000592 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001555 ! digestive tract @@ -158216,7 +158882,6 @@ xref: Lacrimal:groove xref: NCIT:C34218 xref: UMLS:C1513875 {source="ncithesaurus:Nasolacrimal_Groove"} xref: VHOG:0001307 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0019306 ! nose epithelium @@ -158280,6 +158945,7 @@ xref: EMAPA:16199 xref: EMAPA:16325 xref: RETIRED_EHDAA2:0001316 xref: VHOG:0001162 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 {source="EHDAA2"} ! surface groove relationship: part_of UBERON:0003071 ! eye primordium @@ -158292,6 +158958,7 @@ xref: EHDAA2:0001328 xref: EHDAA:10648 xref: EMAPA:18717 xref: http://www.snomedbrowser.com/Codes/Details/280546005 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: part_of UBERON:0001697 ! orbit of skull @@ -158306,6 +158973,7 @@ xref: EHDAA2:0001331 xref: EHDAA:5882 xref: EMAPA:17200 xref: VHOG:0001352 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: developmentally_replaces UBERON:0009672 ! oronasal membrane relationship: part_of UBERON:0000166 ! oral opening @@ -158361,6 +159029,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/361428002 xref: NCIT:C34246 xref: UMLS:C1283967 {source="ncithesaurus:Pericardioperitoneal_Canal"} xref: VHOG:0001498 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: located_in UBERON:0002323 ! coelemic cavity lumen relationship: only_in_taxon NCBITaxon:7711 ! Chordata @@ -158374,6 +159043,7 @@ xref: EHDAA:4751 xref: EMAPA:17167 xref: RETIRED_EHDAA2:0001444 is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0010312 ! immature eye relationship: part_of UBERON:0000019 ! camera-type eye relationship: part_of UBERON:0000922 ! embryo @@ -158446,7 +159116,6 @@ xref: EHDAA2:0001484 xref: EHDAA:60 xref: EMAPA:16048 xref: VHOG:0000980 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0016888 {source="EHDAA2"} ! transitional anatomical structure relationship: adjacent_to UBERON:0000087 ! inner cell mass @@ -158538,6 +159207,7 @@ xref: EMAPA:18349 xref: VHOG:0000965 is_a: UBERON:0005256 ! trunk mesenchyme is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation +is_a: UBERON:0010377 ! mesenchyme from somatopleure is_a: UBERON:0015055 ! pubic endochondral element intersection_of: UBERON:0015055 ! pubic endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -158677,10 +159347,10 @@ xref: EHDAA2:0001904 xref: EHDAA:3003 xref: EMAPA:18535 xref: XAO:0000326 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 {source="XAO"} ! primordium is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0004872 {source="XAO"} ! splanchnic layer of lateral plate mesoderm relationship: part_of UBERON:0005602 {source="EHDAA2-modified"} ! dorsal mesogastrium @@ -158786,6 +159456,8 @@ xref: EHDAA:5474 xref: EMAPA:16915 xref: VHOG:0000809 is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: channel_for UBERON:0001359 ! cerebrospinal fluid relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0003993 ! interventricular foramen of CNS @@ -158828,6 +159500,7 @@ xref: EMAPA:18235 xref: FMA:321625 xref: http://en.wikipedia.org/wiki/Tunica_vasculosa_lentis xref: VHOG:0000978 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005607 ! hyaloid vascular plexus @@ -158916,6 +159589,7 @@ id: UBERON:0006312 name: ocular refractive media def: "Body substance in a liquid or semi-solid state in the eyeball which serves to refract light." [http://orcid.org/0000-0002-6601-2165] xref: MA:0001911 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0000019 ! camera-type eye @@ -159118,6 +159792,7 @@ xref: MA:0001761 is_a: UBERON:0001994 ! hyaline cartilage tissue is_a: UBERON:0003583 ! larynx connective tissue is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001740 ! arytenoid cartilage [Term] @@ -159281,6 +159956,7 @@ name: lateral ventricle choroid plexus stroma def: "A choroid plexus stroma that is part of a lateral ventricle." [OBOL:automatic] xref: MA:0000963 is_a: UBERON:0005206 ! choroid plexus stroma +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002285 ! telencephalic ventricle @@ -159304,6 +159980,7 @@ name: fourth ventricle choroid plexus stroma def: "A choroid plexus stroma that is part of a fourth ventricle." [OBOL:automatic] xref: MA:0000985 is_a: UBERON:0005206 ! choroid plexus stroma +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005206 ! choroid plexus stroma intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002290 ! choroid plexus of fourth ventricle @@ -159470,6 +160147,7 @@ def: "The vasa hyaloidea propria and tunica vasculosa lentis are small branches xref: EMAPA:18236 xref: FMA:312395 xref: MA:0001285 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005607 {source="EMAPA"} ! hyaloid vascular plexus @@ -159489,6 +160167,7 @@ def: "A large swelling on the dorsal surface of the tongue at the junction betwe synonym: "intermolar eminence" EXACT [MA:0001590] xref: EMAPA:18273 xref: MA:0001590 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009471 ! dorsum of tongue @@ -159529,7 +160208,7 @@ synonym: "part of afferent arteriole forming juxtaglomerular complex" EXACT [MA: synonym: "renin-producing cells" RELATED [MA:0002580] xref: EMAPA:28269 xref: MA:0002580 -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus relationship: part_of UBERON:0004639 ! renal afferent arteriole @@ -159661,6 +160340,7 @@ xref: EMAPA:29769 xref: http://en.wikipedia.org/wiki/Baculum xref: http://www.snomedbrowser.com/Codes/Details/27962002 xref: MA:0000406 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007719 ! bone of reproductive organ intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0000989 ! penis @@ -159699,6 +160379,7 @@ synonym: "clitoris bone" EXACT [] synonym: "os clitoridis" EXACT [http://en.wikipedia.org/wiki/Baculum] xref: EMAPA:30823 xref: MA:0000387 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007719 ! bone of reproductive organ intersection_of: UBERON:0001474 ! bone element intersection_of: part_of UBERON:0002411 ! clitoris @@ -159715,6 +160396,7 @@ synonym: "hepatic recess" EXACT [] synonym: "subhepatic space" EXACT [FMA:20676] xref: FMA:20676 xref: http://www.snomedbrowser.com/Codes/Details/36051002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001179 {source="MA-abduced"} ! peritoneal cavity @@ -160638,6 +161320,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279534007 xref: MA:0001760 is_a: UBERON:0001996 {source="MA"} ! elastic cartilage tissue is_a: UBERON:0003583 ! larynx connective tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001740 {source="MA"} ! arytenoid cartilage [Term] @@ -160649,6 +161332,7 @@ synonym: "osseous cochlear canal" EXACT [FMA:75666] xref: EMAPA:35621 xref: FMA:75666 xref: MA:0001183 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea @@ -160662,6 +161346,7 @@ synonym: "osseous part of external acoustic meatus" EXACT [FMA:61290] xref: EMAPA:37526 {source="MA:th"} xref: FMA:61290 xref: MA:0001235 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001352 ! external acoustic meatus @@ -160815,6 +161500,7 @@ xref: MA:0000369 xref: MESH:D007670 xref: NCIT:C12927 xref: UMLS:C0022651 {source="ncithesaurus:Renal_Calyx"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001224 ! renal pelvis @@ -160847,6 +161533,7 @@ xref: BTO:0000136 xref: CALOHA:TS-1296 xref: EMAPA:32692 xref: MA:0000416 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: contributes_to_morphology_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung @@ -160856,6 +161543,7 @@ id: UBERON:0006525 name: left lung alveolar system xref: EMAPA:19001 xref: MA:0001775 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002168 ! left lung relationship: part_of UBERON:0006524 ! alveolar system @@ -160865,6 +161553,7 @@ id: UBERON:0006526 name: right lung alveolar system xref: EMAPA:35717 xref: MA:0001784 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0002167 ! right lung relationship: part_of UBERON:0006524 ! alveolar system @@ -161043,6 +161732,7 @@ subset: vertebrate_core xref: EMAPA:28457 xref: TAO:0005305 xref: ZFA:0005305 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -161055,6 +161745,7 @@ name: renal duct def: "A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9] xref: TAO:0005289 xref: ZFA:0005289 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002113 ! kidney @@ -161272,6 +161963,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245445008 xref: NCIT:C34245 xref: Pectinate:line xref: UMLS:C0821671 {source="ncithesaurus:Pectinate_Line"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:8410024 ! intestinal junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0000931 ! proctodeum @@ -161346,6 +162038,7 @@ synonym: "balance organ" EXACT [https://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2519 xref: http://linkedlifedata.com/resource/umls/id/C0682674 xref: UMLS:C0682674 {source="BIRNLEX:2519"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0004681 ! vestibular system @@ -161397,6 +162090,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230247 xref: http://www.snomedbrowser.com/Codes/Details/262209009 xref: NCIT:C34008 xref: UMLS:C0230247 {source="ncithesaurus:Round_Ligament_of_the_Liver"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0006592 ! transformed vein is_a: UBERON:0013139 ! ligament of liver disjoint_from: UBERON:0006589 ! round ligament of uterus @@ -161483,6 +162177,7 @@ synonym: "plicae gubernatrix" RELATED PLURAL [http://www.drugs.com/dict/genitoin xref: BTO:0002814 xref: http://www.snomedbrowser.com/Codes/Details/300350000 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008843 ! gubernaculum testis @@ -161700,6 +162395,7 @@ xref: BTO:0002018 xref: FMA:20172 xref: http://en.wikipedia.org/wiki/Corpus_cavernosum_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/16657007 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006609 ! corpus cavernosum intersection_of: UBERON:0006609 ! corpus cavernosum @@ -161839,6 +162535,7 @@ xref: FMA:77110 xref: http://www.snomedbrowser.com/Codes/Details/305223006 xref: MA:0002955 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium @@ -161993,6 +162690,7 @@ xref: EHDAA2:0004519 xref: EMAPA:19212 xref: FMA:14812 xref: galen:CeliacTrunk +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001640 ! celiac artery @@ -162033,6 +162731,7 @@ xref: FMA:18248 xref: http://en.wikipedia.org/wiki/Crus_of_penis xref: http://www.snomedbrowser.com/Codes/Details/362270006 xref: MA:0003255 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0018533 ! crus of penis or clitoris intersection_of: UBERON:0018533 ! crus of penis or clitoris @@ -162054,6 +162753,7 @@ xref: EMAPA:30821 xref: FMA:20175 xref: http://en.wikipedia.org/wiki/Crus_of_clitoris xref: http://www.snomedbrowser.com/Codes/Details/279860002 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0018533 ! crus of penis or clitoris intersection_of: UBERON:0018533 ! crus of penis or clitoris @@ -162096,6 +162796,7 @@ synonym: "uterine tubal muscularis" EXACT [FMA:18318] xref: EMAPA:29046 xref: FMA:18318 xref: http://www.snomedbrowser.com/Codes/Details/259488000 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -162138,6 +162839,7 @@ xref: EMAPA:30522 xref: FMA:18630 xref: http://en.wikipedia.org/wiki/Tunica_albuginea_(ovaries) xref: http://www.snomedbrowser.com/Codes/Details/258409003 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006610 ! tunica albuginea intersection_of: UBERON:0006610 ! tunica albuginea intersection_of: part_of UBERON:0000992 ! ovary @@ -162151,6 +162853,7 @@ def: "An adventitia that is part of a epididymis." [OBOL:automatic] synonym: "epididymis adventitia" EXACT [FMA:19136] xref: EMAPA:30443 xref: FMA:19136 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia @@ -162163,6 +162866,7 @@ name: muscle layer of epididymis def: "A muscle layer that is part of a epididymis." [OBOL:automatic] xref: EMAPA:30747 xref: FMA:19149 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -162199,6 +162903,7 @@ synonym: "tunica adventitia glandulae vesiculosae" EXACT LATIN [FMA:19403, FMA:T xref: EMAPA:29775 xref: FMA:19403 xref: http://www.snomedbrowser.com/Codes/Details/252406002 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia @@ -162295,6 +163000,7 @@ synonym: "vaginal muscularis" EXACT [] xref: EMAPA:30997 xref: FMA:19976 xref: http://www.snomedbrowser.com/Codes/Details/253069005 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -162352,8 +163058,8 @@ synonym: "septum scroti" EXACT LATIN [] xref: EMAPA:29745 xref: FMA:20729 xref: http://www.snomedbrowser.com/Codes/Details/279591002 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: adjacent_to UBERON:0035105 ! sac of scrotum @@ -162533,6 +163239,7 @@ xref: http://en.wikipedia.org/wiki/Greater_palatine_artery xref: http://www.snomedbrowser.com/Codes/Details/312163002 xref: MA:0001993 is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -162582,6 +163289,7 @@ xref: EMAPA:19195 xref: FMA:54721 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2359 xref: http://www.snomedbrowser.com/Codes/Details/264194004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 {source="FMA"} ! anatomical cavity relationship: contains UBERON:0000007 ! pituitary gland relationship: part_of UBERON:0003689 ! sella turcica @@ -162609,6 +163317,7 @@ synonym: "canales alveolares maxillae" RELATED LATIN [http://en.wikipedia.org/wi xref: Alveolar:canals xref: EMAPA:25099 xref: FMA:57743 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0018397 ! posterior superior alveolar artery relationship: conduit_for UBERON:0018401 ! posterior superior alveolar nerve @@ -162637,7 +163346,6 @@ is_a: UBERON:0003837 ! thoracic segment connective tissue relationship: attaches_to UBERON:0002359 ! fibrous pericardium relationship: develops_from UBERON:0002204 ! musculoskeletal system relationship: develops_from UBERON:0006239 ! future central tendon -relationship: develops_from UBERON:0010084 ! future diaphragm relationship: immediate_transformation_of UBERON:0006239 {evidence="definitional"} ! future central tendon relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001103 {source="VHOG"} ! diaphragm @@ -162670,6 +163378,7 @@ synonym: "canalis incisivus" EXACT LATIN [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:19034 xref: FMA:59107 xref: Incisive:canals +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: conduit_for UBERON:0008810 ! nasopalatine nerve relationship: part_of UBERON:0003129 ! skull @@ -162684,6 +163393,7 @@ xref: EMAPA:19161 xref: FMA:59473 xref: http://www.snomedbrowser.com/Codes/Details/368876003 xref: Mandibular:canal +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0005744 ! bone foramen intersection_of: conduit_for UBERON:0018405 ! inferior alveolar nerve @@ -162701,6 +163411,7 @@ xref: EMAPA:29307 xref: FMA:65075 xref: http://www.snomedbrowser.com/Codes/Details/278830004 xref: Inguinal:rings +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003702 ! inguinal canal relationship: part_of UBERON:0006204 ! inguinal ligament @@ -162712,6 +163423,7 @@ def: "A valve that is part of a vein." [OBOL:automatic] synonym: "valve of vein" EXACT [FMA:68095] xref: FMA:68095 is_a: UBERON:0003978 ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0001638 ! vein relationship: part_of UBERON:0001638 ! vein @@ -162767,6 +163479,7 @@ xref: NCIT:C34179 xref: UMLS:C1517293 {source="ncithesaurus:Foramen_Secundum"} xref: VHOG:0001471 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004155 ! atrial septum secundum relationship: part_of UBERON:0004155 ! atrial septum secundum @@ -162833,6 +163546,7 @@ xref: EMAPA:19012 xref: FMA:75370 xref: http://www.snomedbrowser.com/Codes/Details/139380001 xref: Hypoglossal:canal +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0001650 ! hypoglossal nerve @@ -162874,6 +163588,7 @@ def: "On the lower surface of the basilar part of occipital bone, about 1 cm. in xref: EMAPA:19250 xref: FMA:75746 xref: Pharyngeal:tubercle +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0001042 {source="EMAPA"} ! chordate pharynx @@ -162914,6 +163629,7 @@ xref: EMAPA:18961 xref: FMA:77273 xref: http://www.snomedbrowser.com/Codes/Details/85139009 xref: Sublingual:caruncle +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 ! tongue @@ -162976,6 +163692,8 @@ xref: Tentorium:cerebelli xref: UMLS:C0228121 {source="ncithesaurus:Tentorium_Cerebelli"} xref: VHOG:0001298 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002363 ! dura mater [Term] @@ -163000,6 +163718,7 @@ xref: NCIT:C34221 xref: Spinal:canal xref: UMLS:C0037922 {source="ncithesaurus:Vertebral_Canal"} xref: UMLS:C1522467 {source="ncithesaurus:Neural_Canal"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0002240 ! spinal cord @@ -163136,12 +163855,9 @@ xref: MA:0000725 is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005160 ! vestigial structure disjoint_from: UBERON:0006713 ! foramen cecum of frontal bone -relationship: develops_from UBERON:0000062 ! organ relationship: develops_from UBERON:0000949 ! endocrine system relationship: develops_from UBERON:0001004 ! respiratory system -relationship: develops_from UBERON:0001007 ! digestive system relationship: develops_from UBERON:0001042 ! chordate pharynx -relationship: develops_from UBERON:0001555 ! digestive tract relationship: develops_from UBERON:0001761 ! future foramen cecum relationship: develops_from UBERON:0003091 ! thyroid primordium relationship: immediate_transformation_of UBERON:0001761 ! future foramen cecum @@ -163156,6 +163872,8 @@ synonym: "f. caecum ossis frontalis" RELATED LATIN [http://en.wikipedia.org/wiki synonym: "foramen caecum ossis frontalis" RELATED LATIN [http://en.wikipedia.org/wiki/Foramen_cecum_(frontal_bone)] xref: FMA:57443 xref: http://en.wikipedia.org/wiki/Foramen_cecum_(frontal_bone) +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -163222,6 +163940,7 @@ synonym: "skeletal parts of autopod" EXACT [https://orcid.org/0000-0002-6601-216 synonym: "skeleton of autopod" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0005019 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0002470 ! autopod region @@ -163368,6 +164087,7 @@ xref: FMA:52760 xref: http://www.snomedbrowser.com/Codes/Details/264091009 xref: MA:0002985 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001689 ! malleus bone relationship: part_of UBERON:0001689 ! malleus bone relationship: surrounded_by UBERON:0002364 {source="cjm"} ! tympanic membrane @@ -163392,6 +164112,7 @@ xref: MA:0001182 xref: Modiolus:(cochlea) xref: NCIT:C33135 xref: UMLS:C0229503 {source="ncithesaurus:Modiolus"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ disjoint_from: UBERON:0011386 ! facial modiolus relationship: contributes_to_morphology_of UBERON:0001844 ! cochlea @@ -163414,6 +164135,7 @@ xref: http://en.wikipedia.org/wiki/Osseous_spiral_lamina xref: http://www.snomedbrowser.com/Codes/Details/361315008 xref: MA:0001184 xref: MESH:D013137 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006723 {source="FMA"} ! cochlear modiolus relationship: part_of UBERON:0007223 {source="MA"} ! osseus cochlea @@ -163436,8 +164158,8 @@ xref: http://www.snomedbrowser.com/Codes/Details/279840005 xref: MA:0001192 xref: MESH:D055493 xref: Spiral:ligament -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008845 ! nonskeletal ligament relationship: attaches_to UBERON:0006106 {source="MESH-def"} ! cochlear canal relationship: has_part CL:0002665 ! otic fibrocyte @@ -163516,6 +164238,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/17779003 xref: MA:0002497 xref: NCIT:C33309 xref: UMLS:C0227530 {source="ncithesaurus:Perisinusoidal_Space"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: contributes_to_morphology_of UBERON:0004647 ! liver lobule relationship: part_of UBERON:0004647 ! liver lobule @@ -163537,6 +164260,7 @@ xref: EMAPA:37457 {source="MA:th"} xref: FMA:59222 xref: http://en.wikipedia.org/wiki/Canthus xref: http://www.snomedbrowser.com/Codes/Details/181145006 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: connects UBERON:0001712 ! upper eyelid relationship: connects UBERON:0001713 ! lower eyelid @@ -163668,6 +164392,7 @@ xref: GAID:896 xref: http://www.snomedbrowser.com/Codes/Details/63716004 xref: MESH:D016850 xref: ZFA:0005570 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0000964 ! cornea @@ -163697,7 +164422,7 @@ xref: FMA:58838 xref: http://en.wikipedia.org/wiki/Zonule_of_Zinn xref: http://www.snomedbrowser.com/Codes/Details/362524000 xref: ZFA:0005573 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament relationship: continuous_with UBERON:0000965 ! lens of camera-type eye relationship: continuous_with UBERON:0001775 ! ciliary body @@ -163785,6 +164510,7 @@ xref: MA:0003050 xref: MESH:A02.835.232.500.247.343 xref: NCIT:C32718 xref: UMLS:C0015813 {source="ncithesaurus:Head_of_the_Femur"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: adjacent_to UBERON:0001269 ! acetabular part of hip bone relationship: part_of UBERON:0004412 ! proximal epiphysis of femur @@ -163870,6 +164596,7 @@ synonym: "lamina quadrigemina" EXACT LATIN [FMA:77488, FMA:TA] synonym: "quadrigeminal plate" EXACT [FMA:77488] xref: FMA:77488 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1374 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0009616 ! presumptive midbrain @@ -164148,6 +164875,7 @@ comment: This grouping class is primarily to accommodate GO subset: grouping_class synonym: "optic lobe" RELATED [GAID:1233] xref: GAID:1233 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 {source="cjm"} ! organ system subdivision relationship: capable_of GO:0007601 ! visual perception relationship: part_of UBERON:0001016 ! nervous system @@ -164158,6 +164886,7 @@ name: arthropod optic lobe def: "A region of the adult brain that processes the visual information from the compound eyes." [FBC:gg, ISBN:978-3-11-014898-5] synonym: "optic lobe" RELATED SENSU [FBbt:00003701] xref: FBbt:00003701 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0000955 ! brain @@ -164167,6 +164896,7 @@ id: UBERON:0006796 name: cephalopod optic lobe def: "Large lobes of the brain associated with the eyes. In octopods and some squids the optic lobes may be separated from the rest of the brain by an optic stalk of varying length. In Octopus the optic lobes contain 92 million cells compared with only 42 million in the main central mass of the brain (J. Young, 1963) ." [http://tolweb.org/accessory/Cephalopoda_Glossary?acc_id=587] synonym: "optic lobe" RELATED SENSU [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006794 ! visual processing part of nervous system relationship: part_of UBERON:0000955 ! brain @@ -164239,6 +164969,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/181924000 xref: Humeral_head xref: NCIT:C32720 xref: UMLS:C0223683 {source="ncithesaurus:Head_of_the_Humerus"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: connected_to UBERON:0006657 ! glenoid fossa relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus @@ -164249,6 +164980,7 @@ name: acetabular rim def: "A prominent unever rim that bounds the acetabulum, serving as the attachment for the acetabular labrum, which reduces its opening, and deepens the surface for formation of the hip joint." [http://en.wikipedia.org/wiki/Acetabulum#Structure] synonym: "acetabular margin" RELATED [] xref: FMA:16941 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001269 ! acetabular part of hip bone @@ -164266,6 +164998,7 @@ xref: NCIT:C75332 xref: Obturator:foramen xref: UMLS:C0223670 {source="ncithesaurus:Obturator_Foramen"} is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: conduit_for UBERON:0001314 ! obturator artery relationship: conduit_for UBERON:0005465 ! obturator nerve relationship: part_of UBERON:0007832 {source="AAO"} ! pelvic girdle skeleton @@ -164299,6 +165032,7 @@ xref: AAO:0000812 xref: FMA:23297 xref: http://www.snomedbrowser.com/Codes/Details/181920009 is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001105 ! clavicle bone [Term] @@ -164370,6 +165104,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0223710 xref: http://www.snomedbrowser.com/Codes/Details/181949001 xref: NCIT:C33200 xref: UMLS:C0223710 {source="ncithesaurus:Olecranon"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna @@ -164397,6 +165132,7 @@ xref: AAO:0000298 xref: FMA:53171 xref: http://www.snomedbrowser.com/Codes/Details/244686000 xref: Mental:foramen +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0018406 ! mental nerve @@ -164415,6 +165151,7 @@ xref: FMA:60116 xref: http://www.snomedbrowser.com/Codes/Details/281486007 is_a: CARO:0000003 is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0000004 ! nose @@ -164455,6 +165192,7 @@ xref: EMAPA:37443 {source="MA:th"} xref: FMA:7487 xref: http://en.wikipedia.org/wiki/Body_of_sternum xref: http://www.snomedbrowser.com/Codes/Details/361743001 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000975 ! sternum @@ -164536,6 +165274,7 @@ synonym: "lumen of cartilaginous trachea" EXACT [OBOL:automatic] synonym: "tracheal lumen" EXACT [FMA:7469] xref: FMA:7469 xref: http://www.snomedbrowser.com/Codes/Details/197486000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0003126 ! trachea @@ -164735,6 +165474,7 @@ xref: TAO:0001973 xref: UMLS:C0226994 {source="ncithesaurus:Tooth_Cusp"} xref: ZFA:0005434 is_a: UBERON:0000476 {source="ZFA"} ! acellular anatomical structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003675 {source="FMA"} ! tooth crown [Term] @@ -164906,6 +165646,7 @@ xref: EMAPA:28811 xref: FMA:15893 xref: http://www.snomedbrowser.com/Codes/Details/3563003 xref: MA:0002654 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0000056 ! ureter @@ -164932,7 +165673,6 @@ is_a: UBERON:0004177 ! hemopoietic organ is_a: UBERON:0005058 ! hemolymphoid system gland is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0006858 ! adrenal/interrenal gland -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of GO:0006694 {source="https://doi.org/10.1242/dev.00427"} ! steroid biosynthetic process relationship: develops_from UBERON:0006857 {source="ZFA"} ! interrenal primordium relationship: has_developmental_contribution_from UBERON:0002342 {notes="check body vs gland", source="https://github.com/obophenotype/uberon/wiki/The-neural-crest"} ! neural crest @@ -164963,6 +165703,7 @@ synonym: "suprarenal gland - interrenal gland" RELATED [VHOG:0001141] xref: VHOG:0001141 is_a: UBERON:0002368 ! endocrine gland is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: has_part CL:0000166 ! chromaffin cell relationship: has_part CL:0000457 ! biogenic amine secreting cell @@ -165037,6 +165778,7 @@ xref: http://en.wikipedia.org/wiki/Body_of_femur xref: http://www.snomedbrowser.com/Codes/Details/182048009 xref: MA:0003055 xref: NCIT:C96209 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000981 ! femur @@ -165078,6 +165820,7 @@ xref: EMAPA:37540 {source="MA:th"} xref: FMA:32875 xref: MA:0003052 is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000981 ! femur relationship: part_of UBERON:0000981 ! femur @@ -165092,7 +165835,6 @@ synonym: "rectum" NARROW [FBbt:00005756] synonym: "terminal section of digestive tract" RELATED [] xref: FBbt:00005756 xref: WBbt:0005773 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract relationship: continuous_with UBERON:0001245 ! anus relationship: develops_from UBERON:0001046 ! hindgut @@ -165149,6 +165891,7 @@ xref: ANISEED:1235299 xref: BSA:0000064 xref: BTO:0003173 xref: http://en.wikipedia.org/wiki/Endostyle +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006846 ! surface groove relationship: capable_of GO:0006590 ! thyroid hormone generation relationship: has_potential_to_develop_into UBERON:0002046 {gci_relation="part_of", gci_filler="NCBITaxon:117569"} ! thyroid gland @@ -165238,6 +165981,7 @@ synonym: "liver vascular system" RELATED [EHDAA2:0003454] xref: EHDAA2:0003454 xref: EMAPA:35501 xref: FMA:73748 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -165322,8 +166066,8 @@ synonym: "wings of the nose" RELATED [http://en.wikipedia.org/wiki/Ala_of_nose] xref: FMA:59519 xref: http://en.wikipedia.org/wiki/Ala_of_nose xref: http://www.snomedbrowser.com/Codes/Details/361345006 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015212 ! lateral structure relationship: develops_from UBERON:0004067 ! lateral nasal prominence relationship: in_lateral_side_of UBERON:0007827 {source="FMA-abduced-lr"} ! external nose @@ -165379,6 +166123,7 @@ synonym: "lumen of gut" EXACT [FMA:45677] xref: BTO:0000349 xref: EMAPA:32908 xref: FMA:45677 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001555 ! digestive tract @@ -165660,6 +166405,7 @@ synonym: "neuroepithelium" RELATED INCONSISTENT [BTO:0000314] xref: CALOHA:TS-0682 xref: FMA:62410 xref: http://www.snomedbrowser.com/Codes/Details/309045006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000488 ! atypical epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: has_part CL:0000098 ! sensory epithelial cell @@ -165675,7 +166421,6 @@ synonym: "ampullary crest neuroepithelium" RELATED [MA:0002870] synonym: "epithelium of crista of ampulla of semicircular duct of membranous labyrinth" EXACT [FMA:75636] xref: FMA:75636 xref: MA:0002870 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006932 {source="FMA"} ! vestibular epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0004721 ! crista ampullaris @@ -165702,6 +166447,7 @@ def: "The epithelial cell layer containing the sensory hair cells and their asso subset: pheno_slim xref: EMAPA:32883 xref: MA:0001189 +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0015807 ! ear epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001846 ! internal ear @@ -165715,6 +166461,7 @@ xref: EHDAA2:0001470 xref: EHDAA:8983 xref: EMAPA:17592 xref: VHOG:0000632 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0015814 ! outer ear epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001757 ! pinna @@ -165947,6 +166694,7 @@ xref: FMA:294636 xref: MA:0002873 xref: MFMO:0000055 is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: contributes_to_morphology_of UBERON:0001684 ! mandible relationship: part_of UBERON:0001684 ! mandible relationship: seeAlso FMA:59459 @@ -166016,6 +166764,7 @@ xref: UMLS:C0175322 {source="BIRNLEX:1022"} xref: VHOG:0000244 xref: ZFA:0001195 is_a: UBERON:0000483 {source="EHDAA2"} ! epithelium +is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0002196 {source="MA"} ! adenohypophysis [Term] @@ -166399,7 +167148,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/360403003 xref: MESH:A16.254.403.473.200 xref: NCIT:C34125 xref: UMLS:C0008508 {source="ncithesaurus:Chorionic_Villus"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0004027 {source="MP-def"} ! chorionic plate @@ -166568,6 +167316,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/361792007 xref: MESH:A02.835.232.500.247.510 xref: NCIT:C61563 xref: UMLS:C0015815 {source="ncithesaurus:Femoral_Neck"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -166891,6 +167640,7 @@ synonym: "rectovaginal fold" EXACT [FMA:16533] xref: FMA:16533 xref: http://www.snomedbrowser.com/Codes/Details/361301006 xref: Recto-uterine:fold +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002358 ! peritoneum @@ -166961,6 +167711,7 @@ xref: EMAPA:18046 xref: FMA:13332 xref: http://www.snomedbrowser.com/Codes/Details/244940004 xref: VHOG:0000933 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001103 ! diaphragm @@ -166987,6 +167738,7 @@ def: "An anatomical cavity that surrounded_by a midgut." [OBOL:automatic] synonym: "midgut lumen" EXACT [FMA:54366] xref: EMAPA:18377 xref: FMA:54366 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001045 ! midgut @@ -167000,6 +167752,7 @@ def: "An anatomical cavity that surrounded_by a hindgut." [OBOL:automatic] synonym: "hindgut lumen" EXACT [FMA:54367] xref: EMAPA:18396 xref: FMA:54367 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001046 ! hindgut @@ -167155,6 +167908,7 @@ def: "An anatomical cavity that surrounded_by a anal canal." [OBOL:automatic] synonym: "anal canal lumen" EXACT [FMA:17357] xref: EMAPA:18836 xref: FMA:17357 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000159 ! anal canal @@ -167170,6 +167924,7 @@ synonym: "colonic lumen" RELATED [FMA:18374] xref: EMAPA:18945 xref: FMA:18374 xref: http://www.snomedbrowser.com/Codes/Details/362156004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001155 ! colon @@ -167281,6 +168036,7 @@ synonym: "long head of biceps brachii muscle" RELATED [FMA:37683] xref: EMAPA:25054 xref: FMA:37683 xref: Origin_and_insertion +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 {source="FMA"} ! muscle head relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii @@ -167296,6 +168052,7 @@ synonym: "short head of biceps brachii muscle" RELATED [FMA:37682] xref: EMAPA:25055 xref: FMA:37682 xref: Origin_and_insertion +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 {source="FMA"} ! muscle head relationship: part_of UBERON:0000043 ! tendon relationship: part_of UBERON:0001507 ! biceps brachii @@ -167322,6 +168079,7 @@ name: border of scapula synonym: "scapular border" EXACT [FMA:23797] xref: EMAPA:25124 xref: FMA:23797 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036304 ! anatomical border intersection_of: UBERON:0036304 ! anatomical border intersection_of: part_of UBERON:0006849 ! scapula @@ -167367,7 +168125,6 @@ xref: EMAPA:25127 xref: FMA:23242 xref: http://en.wikipedia.org/wiki/Medial_border_of_scapula xref: http://www.snomedbrowser.com/Codes/Details/368187009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007171 {source="EMAPA-modified"} ! border of scapula relationship: has_developmental_contribution_from UBERON:0002329 {source="http://www.ncbi.nlm.nih.gov/pubmed/20136669"} ! somite @@ -167438,6 +168195,7 @@ synonym: "basal cell layer of uroepithelium" EXACT [FMA:84154] xref: EMAPA:28806 xref: FMA:84154 is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0000365 ! urothelium [Term] @@ -167603,8 +168361,8 @@ synonym: "bone marrow stroma" EXACT [FMA:21426] xref: CALOHA:TS-0085 xref: FMA:21426 xref: Stroma -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002371 ! bone marrow relationship: has_part CL:0002240 ! marrow fibroblast @@ -167625,8 +168383,8 @@ xref: FMA:7393 xref: http://www.snomedbrowser.com/Codes/Details/361384001 xref: NCIT:C117875 xref: Tracheobronchial:tree -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000062 ! organ +is_a: UBERON:0004119 ! endoderm-derived structure relationship: has_part UBERON:0002185 ! bronchus relationship: has_part UBERON:0003126 ! trachea relationship: has_part UBERON:0007592 {source="Wikipedia"} ! ciliated columnar epithelium @@ -167698,7 +168456,7 @@ xref: EHDAA2:0002093 xref: EMAPA:16182 xref: TAO:0000999 xref: ZFA:0000999 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005256 ! trunk mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0003083 ! trunk neural crest @@ -167790,6 +168548,7 @@ def: "The osseous cochlea is the bony foundation that forms the small shell arra subset: pheno_slim xref: EMAPA:35620 xref: MA:0000239 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001839 ! bony labyrinth relationship: part_of UBERON:0001844 ! cochlea @@ -167809,6 +168568,8 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1113 xref: MA:0000922 xref: PBA:128011936 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0007225 {source="lexical"} ! lateral entorhinal cortex relationship: part_of UBERON:0002728 ! entorhinal cortex relationship: part_of UBERON:0002895 ! secondary olfactory cortex @@ -167831,6 +168592,8 @@ xref: MA:0000911 xref: MBA:918 xref: PBA:128011876 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002022 {source="MA"} ! insula relationship: part_of UBERON:0002728 ! entorhinal cortex relationship: part_of UBERON:0002895 {source="MA"} ! secondary olfactory cortex @@ -167975,6 +168738,7 @@ xref: EHDAA2:0000031 xref: EHDAA:583 xref: EMAPA:16382 xref: VHOG:0000510 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 @@ -167986,6 +168750,7 @@ xref: EHDAA2:0000038 xref: EHDAA:595 xref: EMAPA:16388 xref: VHOG:0000511 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0004362 {source="EHDAA2"} ! pharyngeal arch 1 @@ -168871,6 +169636,7 @@ def: "A vasculature that is part of a pectoral appendage." [OBOL:automatic] synonym: "pectoral fin vasculature" NARROW SENSU [ZFA:0005096] xref: TAO:0005096 xref: ZFA:0005096 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007304 ! appendage vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0004710 ! pectoral appendage @@ -168883,6 +169649,7 @@ def: "A vasculature that is part of a chordate pharynx." [OBOL:automatic] synonym: "branchial vasculature" EXACT [ZFA:0005003] xref: TAO:0005003 xref: ZFA:0005003 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001042 ! chordate pharynx @@ -168955,6 +169722,7 @@ xref: MA:0002536 xref: MESH:D013183 xref: NCIT:C13278 xref: UMLS:C0038056 {source="ncithesaurus:Sputum"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006538 ! respiratory system fluid/secretion relationship: part_of UBERON:0006524 ! alveolar system @@ -169028,8 +169796,8 @@ name: superficial external pudendal artery def: "An artery that arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery] comment: After piercing the femoral sheath and fascia cribrosa, it courses medialward, across the spermatic cord (or round ligament in the female), to be distributed to the integument on the lower part of the abdomen, the penis and scrotum in the male, and the labium majus in the female, anastomosing with branches of the internal pudendal artery. it crosses superficial to the inguinal ligament[WP] synonym: "arteria pudenda externa superficialis" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery] -synonym: "arteriae pudendae externa superficialis" EXACT DEPRECATED [https://doi.org/10.1002/ca.23705] synonym: "arteriae pudendae externa superficialis" EXACT LATIN [https://doi.org/10.1002/ca.23705] +synonym: "arteriae pudendae externa superficialis" EXACT DEPRECATED [https://doi.org/10.1002/ca.23705] synonym: "arteriae pudendales externa superficialis" EXACT LATIN [https://doi.org/10.1002/ca.23705] synonym: "superficial external pudic artery" EXACT [] xref: FMA:20738 @@ -169090,8 +169858,8 @@ synonym: "pancreatic lobule" EXACT [FMA:16012] xref: EMAPA:37710 {source="MA:th"} xref: FMA:16012 xref: MA:0000721 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: has_part UBERON:0001263 ! pancreatic acinus relationship: has_part UBERON:0014719 ! intralobular duct relationship: part_of UBERON:0000017 ! exocrine pancreas @@ -169133,6 +169901,7 @@ def: "Thin keratinized layer of epidermis projecting from outer surface of beak[ synonym: "horny sheath of beak" RELATED [] synonym: "outer keratin layer of beak" RELATED [] xref: Rhamphotheca +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0005094 ! beak @@ -169167,6 +169936,7 @@ synonym: "nested pallium" RELATED [BTO:0003389] xref: BTO:0003389 xref: http://en.wikipedia.org/wiki/Nidopallium is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -169178,6 +169948,7 @@ synonym: "hyperstriatum" RELATED [BTO:0003400, http://en.wikipedia.org/wiki/Hype xref: BTO:0003400 xref: http://en.wikipedia.org/wiki/Hyperpallium is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -169187,6 +169958,7 @@ name: mesopallium synonym: "middle pallium" RELATED [BTO:0003405] xref: BTO:0003405 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -169201,6 +169973,7 @@ xref: BM:ARCO xref: BTO:0003408 xref: http://en.wikipedia.org/wiki/Arcopallium is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -169219,6 +169992,7 @@ name: stria vascularis vasculature def: "Blood vessels supplying the stria vascularis in the cochlea of the inner ear." [MP:0004368] synonym: "stria vascularis blood vessel" RELATED [MP:0004368] synonym: "stria vascularis blood vessels" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002200 ! vasculature of head is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -169273,6 +170047,7 @@ xref: Birds xref: BTO:0000301 xref: http://www.snomedbrowser.com/Codes/Details/68028003 xref: NCIT:C111162 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0013765 ! digestive system element relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -169289,7 +170064,6 @@ xref: http://en.wikipedia.org/wiki/Proventriculus xref: http://www.snomedbrowser.com/Codes/Details/63897003 xref: MESH:D011531 xref: NCIT:C111301 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011953 {source="cjm"} ! stomach glandular region relationship: capable_of GO:0001696 ! gastric acid secretion relationship: continuous_with UBERON:0005052 ! gizzard @@ -169325,7 +170099,6 @@ def: "Any of the first three stomachs of a ruminant, i.e., the rumen, reticulum, subset: organ_slim synonym: "forestomach" BROAD SENSU [BTO:0000480] xref: BTO:0000480 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011954 ! stomach non-glandular region relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0007366 ! ruminant stomach @@ -169406,6 +170179,7 @@ def: "An anatomical surface that is part of a tongue." [OBOL:automatic] synonym: "tongue surface" EXACT [FMA:54647] xref: FMA:54647 xref: http://www.snomedbrowser.com/Codes/Details/314870004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0001723 ! tongue @@ -169499,6 +170273,7 @@ synonym: "stratum compactum" EXACT [AAO:0010600] xref: AAO:0010600 xref: TAO:0001182 xref: ZFA:0001182 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0002067 ! dermis @@ -169513,6 +170288,7 @@ xref: http://en.wikipedia.org/wiki/Yolk xref: MESH:A16.631.325 xref: ncithesaurus:Egg_Yolk xref: VHOG:0001742 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0007379 ! shelled egg @@ -169550,6 +170326,7 @@ name: epidermal scale def: "A fold in the surface epidermis composed of keratin[Kardong]." [http://en.wikipedia.org/wiki/Reptile_scale, ISBN:0073040584] xref: Reptile:scale is_a: UBERON:0002542 ! scale +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000961 ! external integument structure relationship: part_of UBERON:0001003 ! skin epidermis @@ -169622,6 +170399,7 @@ def: "A cartilage tissue that is part of a pectoral appendage." [OBOL:automatic] synonym: "pectoral fin cartilage" RELATED [TAO:0000257] xref: TAO:0000257 xref: ZFA:0000257 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004710 ! pectoral appendage @@ -169636,6 +170414,7 @@ def: "A cartilage tissue that is part of a pelvic appendage." [OBOL:automatic] synonym: "pelvic fin cartilage" RELATED [TAO:0001459] xref: TAO:0001459 xref: ZFA:0001459 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007389 ! paired limb/fin cartilage intersection_of: UBERON:0002418 ! cartilage tissue intersection_of: part_of UBERON:0004709 ! pelvic appendage @@ -169776,6 +170555,8 @@ xref: NCIT:C33628 xref: Stratum:intermedium xref: UMLS:C1514987 {source="ncithesaurus:Stratum_Intermedium"} is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005176 {source="BTO"} ! tooth enamel organ [Term] @@ -170002,6 +170783,7 @@ synonym: "apical epidermal caps" EXACT PLURAL [ZFA:0005148] synonym: "apical epithelial cap" EXACT [http://en.wikipedia.org/wiki/Blastema] xref: TAO:0005148 xref: ZFA:0005148 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007567 {source="ZFA"} ! regenerating anatomical structure relationship: part_of UBERON:2001389 {source="ZFA"} ! regeneration epithelium of fin/limb relationship: present_in_taxon NCBITaxon:8293 {source="Wikipedia"} ! Caudata @@ -170208,6 +170990,7 @@ name: synovial cavity of hip joint def: "A synovial cavity of joint that is part of a hip joint." [OBOL:automatic] xref: EMAPA:19021 xref: FMA:9701 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007617 ! synovial cavity of joint intersection_of: UBERON:0007617 ! synovial cavity of joint intersection_of: part_of UBERON:0001486 ! hip joint @@ -170715,6 +171498,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=642 xref: http://www.snomedbrowser.com/Codes/Details/369283008 xref: Lateral:recess xref: MBA:153 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="FMA"} ! anatomical space disjoint_from: UBERON:0008902 ! lateral recess of third ventricle relationship: part_of UBERON:0002422 {source="EMAPA"} ! fourth ventricle @@ -170731,6 +171515,7 @@ xref: EMAPA:19322 xref: FMA:38872 xref: http://en.wikipedia.org/wiki/Anular_ligament_of_radius xref: http://www.snomedbrowser.com/Codes/Details/182394000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament relationship: part_of UBERON:0001490 {source="FMA"} ! elbow joint relationship: part_of UBERON:0007165 {source="FMA"} ! proximal radio-ulnar joint @@ -170759,6 +171544,7 @@ xref: TAO:0000875 xref: VHOG:0001209 xref: ZFA:0000875 is_a: UBERON:0003099 {source="ZFA"} ! cranial neural crest +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0007213 {source="EMAPA"} ! mesenchyme derived from head neural crest [Term] @@ -170776,7 +171562,6 @@ id: UBERON:0007684 name: uriniferous tubule def: "Functional unit of the kidney that forms urine, consisting of two parts, the nephron and the collecting tubule." [ISBN:0073040584] xref: FMA:17691 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube @@ -170877,6 +171662,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/368724008 xref: NCIT:C33738 xref: UMLS:C0226971 {source="ncithesaurus:Taste_Pore"} is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0001727 ! taste bud relationship: continuous_with UBERON:0000167 ! oral cavity @@ -170992,6 +171778,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1007150190 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=833 {source="BIRNLEX:1726"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=833 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002150 ! superior cerebellar peduncle relationship: part_of UBERON:0003023 {source="FMA"} ! pontine tegmentum @@ -171665,6 +172452,7 @@ def: "Any sweat gland that is part of a scrotum." [OBOL:automatic] subset: organ_slim xref: EMAPA:29743 is_a: UBERON:0001820 ! sweat gland +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005399 ! male reproductive gland intersection_of: UBERON:0001820 ! sweat gland intersection_of: part_of UBERON:0001300 ! scrotum @@ -171908,7 +172696,6 @@ xref: BTO:0004705 xref: http://linkedlifedata.com/resource/umls/id/C1516792 xref: NCIT:C34132 xref: UMLS:C1516792 {source="ncithesaurus:Connecting_Stalk"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 {source="EHDAA2"} ! extraembryonic structure relationship: develops_from UBERON:0005728 {source="EHDAA2"} ! extraembryonic mesoderm @@ -171962,6 +172749,7 @@ synonym: "panniculus adiposus telae subcutaneae abdominis" EXACT LATIN [FMA:1992 synonym: "superficial layer of superficial fascia of abdomen" EXACT [FMA:19922] xref: FMA:19922 xref: http://en.wikipedia.org/wiki/Fascia_of_Camper +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013493 ! abdominal fascia relationship: has_part UBERON:0001013 {source="Wikipedia"} ! adipose tissue relationship: part_of UBERON:0006635 {source="FMA"} ! anterior abdominal wall @@ -172013,7 +172801,6 @@ xref: TAO:0001117 xref: UMLS:C0039259 {source="ncithesaurus:Tail"} xref: XAO:0003026 xref: ZFA:0001117 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002415 ! tail intersection_of: UBERON:0002415 ! tail intersection_of: part_of UBERON:0006071 ! caudal region @@ -172113,6 +172900,7 @@ xref: EMAPA:35735 xref: FMA:77849 xref: MA:0001194 is_a: UBERON:0001967 ! reticular lamina of epithelium +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001967 ! reticular lamina of epithelium intersection_of: part_of UBERON:0002227 ! spiral organ of cochlea relationship: part_of UBERON:0002227 ! spiral organ of cochlea @@ -172144,6 +172932,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0458561 xref: http://www.snomedbrowser.com/Codes/Details/265785009 xref: NCIT:C32566 xref: UMLS:C0458561 {source="ncithesaurus:External_Nose"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone intersection_of: UBERON:0034929 ! external soft tissue zone intersection_of: has_part UBERON:0005928 ! external naris @@ -172195,6 +172984,7 @@ xref: MA:0000293 xref: NCIT:C33287 xref: UMLS:C0030786 {source="ncithesaurus:Pelvic_Bone"} is_a: UBERON:0003828 ! abdominal segment bone +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0005913 ! zone of bone organ is_a: UBERON:0007828 {source="MA"} ! girdle bone/zone @@ -172285,6 +173075,7 @@ def: "The organ of balance composed of three long bony tubes of the labyrinth." subset: pheno_slim synonym: "osseous semicircular canal" EXACT [OBOL:automatic] xref: MA:0000250 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 {notes="checkme"} ! zone of bone organ relationship: part_of UBERON:0001839 {source="MA"} ! bony labyrinth relationship: part_of UBERON:0001840 {source="MA"} ! semicircular canal @@ -172478,8 +173269,9 @@ xref: TAO:0001642 xref: VSAO:0000054 xref: XAO:0004050 xref: ZFA:0001633 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 {source="VSAO"} ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: bounding_layer_of UBERON:0002328 {source="VSAO-modified"} ! notochord relationship: develops_from UBERON:0003089 {source="ISBN:0073040584"} ! sclerotome relationship: part_of UBERON:0002328 ! notochord @@ -172632,6 +173424,7 @@ name: surface of cartilage def: "An anatomical surface that is part of a cartilage element." [OBOL:automatic] synonym: "cartilage surface" EXACT [FMA:76668] xref: FMA:76668 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0007844 ! cartilage element @@ -172760,7 +173553,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/372177002 xref: MA:0002708 xref: Nail:plate xref: NCIT:C34216 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/rfoulger @@ -172848,6 +173641,7 @@ xref: FMA:9738 xref: http://www.snomedbrowser.com/Codes/Details/281903009 xref: MA:0003089 xref: Pelvic:cavity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0002355 ! pelvic region of trunk @@ -173018,6 +173812,7 @@ xref: BTO:0001923 xref: http://animaldiversity.ummz.umich.edu/site/resources/biodidac/echino001B.gif/medium.jpg xref: http://content60.eol.org/content/2012/06/14/21/52446_580_360.jpg xref: http://eol.org/data_objects/19677434 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: only_in_taxon NCBITaxon:7625 ! Echinoidea relationship: part_of UBERON:0000165 {source="BTO"} ! mouth @@ -173381,6 +174176,7 @@ synonym: "feather quill" RELATED [BTO:0001608] synonym: "quill" RELATED [] xref: BTO:0001608 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0011784 ! feather shaft [Term] @@ -173391,6 +174187,7 @@ synonym: "vane" BROAD [] synonym: "vexillum" EXACT [https://en.wikivet.net/Feather_-_Anatomy_%26_Physiology] xref: BTO:0002536 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connected_to UBERON:0008288 ! feather rachis relationship: has_part UBERON:0008294 ! feather barb relationship: part_of UBERON:0008292 ! vaned feather @@ -173411,6 +174208,7 @@ relationship: part_of UBERON:0011784 ! feather shaft id: UBERON:0008290 name: afterfeather is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] @@ -173455,6 +174253,7 @@ def: "One of a series of branches fused to the rachis (stem) of a feather. The b synonym: "barb" BROAD SENSU [] xref: Barb:(feather) xref: BTO:0002578 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: branching_part_of UBERON:0011784 ! feather shaft relationship: part_of UBERON:0000022 ! feather @@ -173466,6 +174265,7 @@ name: feather barbule def: "Projection from feather bard." [http://orcid.org/0000-0002-6601-2165] synonym: "barbule" BROAD SENSU [] xref: BTO:0003397 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: branching_part_of UBERON:0008294 ! feather barb relationship: part_of UBERON:0000022 ! feather @@ -173491,6 +174291,7 @@ name: inner chondrogenic layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The chondrogenic layer remains undifferentiated and can form chondroblasts or chondrocytes." [http://en.wikipedia.org/wiki/The_Free_Encyclopedia] xref: BTO:0005090 xref: http://en.wikipedia.org/wiki/The_Free_Encyclopedia +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium @@ -173501,6 +174302,7 @@ name: outer fibrous layer of perichondrium def: "The perichondrium consists of two separate layers: an outer fibrous layer and inner chondrogenic layer. The fibrous layer contains fibroblasts, which produce collagenous fibers." [http://en.wikipedia.org/wiki/The_Free_Encyclopedia] xref: BTO:0005091 xref: http://en.wikipedia.org/wiki/The_Free_Encyclopedia +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002222 {source="BTO"} ! perichondrium @@ -173523,6 +174325,7 @@ subset: organ_slim xref: FMA:55076 xref: http://www.snomedbrowser.com/Codes/Details/178973008 is_a: UBERON:0003295 ! pharyngeal gland +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -173805,6 +174608,7 @@ subset: pheno_slim xref: MA:0002874 xref: Nasal:bridge is_a: UBERON:0000061 {source="AEO"} ! anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0001456 ! face relationship: part_of UBERON:0006333 {source="MA"} ! snout @@ -173821,6 +174625,7 @@ xref: EMAPA:37832 {source="MA:th"} xref: FMA:59725 xref: http://www.snomedbrowser.com/Codes/Details/361930008 is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] @@ -174287,6 +175092,7 @@ synonym: "semilunar notch" RELATED [http://en.wikipedia.org/wiki/Trochlear_notch synonym: "semilunar notch of ulna" EXACT [FMA:23619] xref: FMA:23619 xref: Trochlear:notch +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0006822 ! proximal epiphysis of ulna @@ -174575,6 +175381,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/244730009 xref: NCIT:C33158 xref: UMLS:C0224219 {source="ncithesaurus:Nasal_Muscle"} is_a: UBERON:0001577 {source="FMA"} ! facial muscle +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000004 ! nose relationship: part_of UBERON:0000004 ! nose @@ -175339,6 +176146,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1183911 xref: http://www.snomedbrowser.com/Codes/Details/251498008 xref: NCIT:C13100 xref: UMLS:C1183911 {source="ncithesaurus:Prostatic_Muscular_Tissue"} +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002385 ! muscle tissue is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0002385 ! muscle tissue @@ -175358,6 +176166,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227608 xref: http://www.snomedbrowser.com/Codes/Details/279370006 xref: NCIT:C32740 xref: UMLS:C0227608 {source="ncithesaurus:Hilar_Area_of_the_Kidney"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0002113 ! kidney @@ -175429,7 +176238,6 @@ xref: EHDAA:79 xref: EMAPA:16051 xref: FMA:85520 xref: http://en.wikipedia.org/wiki/Hypoblast -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000089 ! hypoblast (generic) relationship: adjacent_to UBERON:0002532 ! epiblast (generic) relationship: develops_from UBERON:0000087 {source="Wikipedia"} ! inner cell mass @@ -175642,6 +176450,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227199 xref: http://www.snomedbrowser.com/Codes/Details/268518001 xref: NCIT:C32660 xref: UMLS:C0227199 {source="ncithesaurus:Gastric_Rugae"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008790 ! rugal fold intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0000945 ! stomach @@ -175655,6 +176464,7 @@ def: "A rugal fold that is part of a vagina." [OBOL:automatic] synonym: "ruga of vagina" EXACT [FMA:19991] synonym: "vaginal ruga" EXACT [FMA:19991] xref: FMA:19991 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008790 ! rugal fold intersection_of: UBERON:0008790 ! rugal fold @@ -175686,6 +176496,7 @@ synonym: "transverse palatine ridge" EXACT [http://www.drugs.com/dict/transverse xref: EMAPA:35638 xref: FMA:75652 is_a: UBERON:0008790 ! rugal fold +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0008790 ! rugal fold intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -175698,7 +176509,6 @@ def: "Primitive endoderm-derived tissue that lines the luminal surface of the mu subset: pheno_slim synonym: "distal endoderm" RELATED [EMAPA:16053] xref: EMAPA:16053 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure is_a: UBERON:0016888 {source="cjm"} ! transitional anatomical structure relationship: develops_from UBERON:0008780 {source="MP"} ! inner cell mass derived epiblast @@ -175780,6 +176590,7 @@ xref: FMA:74580 xref: Gingival:sulcus xref: http://www.snomedbrowser.com/Codes/Details/245753001 xref: NCIT:C114645 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus intersection_of: UBERON:0000093 ! sulcus intersection_of: adjacent_to UBERON:0001091 ! calcareous tooth @@ -175809,6 +176620,7 @@ xref: EMAPA:29794 xref: http://www.snomedbrowser.com/Codes/Details/78779004 xref: MA:0000402 xref: NCIT:C77618 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0010147 ! male accessory sex gland relationship: contributes_to_morphology_of UBERON:0002367 ! prostate gland relationship: part_of UBERON:0002367 {not_supported_by="MA", source="EMAPA"} ! prostate gland @@ -175831,6 +176643,7 @@ name: foramina of scarpa def: "In the maxilla, occasionally two additional canals are present in the middle line of the palatine process; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal." [http://en.wikipedia.org/wiki/Foramina_of_Scarpa] synonym: "foramina of scarpa" RELATED [http://en.wikipedia.org/wiki/Foramina_of_Scarpa] xref: http://en.wikipedia.org/wiki/Foramina_of_Scarpa +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0005871 ! palatine process of maxilla relationship: surrounds UBERON:0008810 ! nasopalatine nerve @@ -175901,6 +176714,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279775003 xref: NCIT:C32723 xref: UMLS:C0229512 {source="ncithesaurus:Helicotrema"} is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002499 {source="Wikipedia"} ! cochlear labyrinth [Term] @@ -175919,6 +176733,7 @@ xref: FMA:293041 xref: http://linkedlifedata.com/resource/umls/id/C1519038 xref: NCIT:C34248 xref: UMLS:C1519038 {source="ncithesaurus:Pharyngeal_Apparatus"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: only_in_taxon NCBITaxon:7711 ! Chordata relationship: part_of UBERON:0000922 ! embryo @@ -175957,6 +176772,7 @@ id: UBERON:0008817 name: thymus primordium endoderm def: "An endoderm that is part of a thymus primordium." [OBOL:automatic] is_a: UBERON:0000925 ! endoderm +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0005562 ! thymus primordium relationship: has_developmental_contribution_from UBERON:0007124 {source="http://www.ncbi.nlm.nih.gov/pubmed/16313389"} ! pharyngeal pouch 3 @@ -176062,6 +176878,7 @@ xref: MA:0001735 xref: NCIT:C32484 xref: UMLS:C0458632 {source="ncithesaurus:Duct_of_the_Epididymis"} is_a: UBERON:0000058 {source="FMA"} ! duct +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct intersection_of: branching_part_of UBERON:0001301 ! epididymis @@ -176120,6 +176937,7 @@ xref: FMA:321632 xref: http://www.snomedbrowser.com/Codes/Details/95949009 xref: MA:0001470 xref: Presphenoid +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone relationship: contributes_to_morphology_of UBERON:0001677 ! sphenoid bone @@ -176320,6 +177138,7 @@ synonym: "scrotal ligament" RELATED [http://en.wikipedia.org/wiki/Gubernaculum] xref: http://www.snomedbrowser.com/Codes/Details/279592009 xref: Scrotal:ligament is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008841 {source="Obol"} ! suspensory ligament intersection_of: UBERON:0008841 ! suspensory ligament @@ -176442,6 +177261,7 @@ subset: pheno_slim synonym: "epamniotic cavity" EXACT [http://www.medilexicon.com/medicaldictionary.php?s=epamniotic+cavity] synonym: "epamniotic cavity" RELATED [MP:0011207] xref: EMAPA:16080 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0004364 ! ectoplacental cone @@ -176491,6 +177311,7 @@ def: "A group of granular epithelial cells in the uterine muscle beneath the pla subset: organ_slim subset: pheno_slim xref: MA:0001723 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005398 ! female reproductive gland relationship: part_of UBERON:0002450 {source="MP"} ! decidua @@ -176506,6 +177327,7 @@ synonym: "tunica muscularis (gaster)" EXACT [FMA:14909] synonym: "tunica muscularis gastris" EXACT [] xref: FMA:14909 xref: http://www.snomedbrowser.com/Codes/Details/362132003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018261 ! muscular coat of digestive tract is_a: UBERON:0034933 ! layer of smooth muscle tissue intersection_of: UBERON:0006660 ! muscular coat @@ -176530,6 +177352,7 @@ synonym: "stratum circulare tunicae muscularis gastricae" EXACT LATIN [FMA:14911 xref: FMA:14911 xref: http://www.snomedbrowser.com/Codes/Details/2746007 xref: MA:0001628 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa relationship: deep_to UBERON:0002439 ! myenteric nerve plexus @@ -176624,6 +177447,7 @@ synonym: "oblique fiber layer of gastric muscularis" EXACT [FMA:14912] synonym: "oblique muscle layer of stomach" EXACT [FMA:14912] xref: EMAPA:37965 {source="MA:th"} xref: FMA:14912 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004923 {notes="middle layer in FMA"} ! organ component layer is_a: UBERON:0034933 ! layer of smooth muscle tissue relationship: composed_primarily_of UBERON:0001135 ! smooth muscle tissue @@ -176643,6 +177467,7 @@ synonym: "stratum longitudinale (tunica muscularis)(gaster)" EXACT LATIN [FMA:14 synonym: "stratum longitudinale tunicae muscularis gastricae" EXACT LATIN [FMA:14910, FMA:TA] xref: EMAPA:37966 {source="MA:th"} xref: FMA:14910 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: contributes_to_morphology_of UBERON:0008856 ! stomach muscularis externa relationship: part_of UBERON:0008856 ! stomach muscularis externa @@ -176654,6 +177479,8 @@ name: enamel knot def: "A transient cluster of cells in the central part of the dental epithelium facing the dental mesenchyme, which acts as an organizing center, providing positional information for tooth morphogenesis and regulating the growth of tooth cusps." [MP:0010864] subset: pheno_slim xref: BTO:0005791 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034922 ! cell cluster relationship: contributes_to_morphology_of UBERON:0005176 ! tooth enamel organ relationship: part_of UBERON:0003843 ! dental epithelium @@ -176669,6 +177496,7 @@ synonym: "bone trabeculae" RELATED [MP:0010867] xref: http://linkedlifedata.com/resource/umls/id/C2826619 xref: NCIT:C82999 xref: UMLS:C2826619 {source="ncithesaurus:Bone_Trabeculae"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: contributes_to_morphology_of UBERON:0002483 ! trabecular bone tissue relationship: part_of UBERON:0002483 {source="MP"} ! trabecular bone tissue @@ -176692,6 +177520,7 @@ def: "The openings in the alveolar septum that permit air flow between adjacent subset: pheno_slim xref: EMAPA:37391 {source="MA:th"} is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002299 ! alveolus of lung [Term] @@ -176726,6 +177555,7 @@ synonym: "superficial fascia muscular layer" EXACT [] xref: EMAPA:18188 xref: MA:0003140 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004253 ! skin muscle is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -176750,6 +177580,7 @@ xref: EMAPA:37866 {source="MA:th"} xref: FMA:70963 xref: http://www.snomedbrowser.com/Codes/Details/51025007 xref: NCIT:C62356 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium relationship: adjacent_to UBERON:0001003 ! skin epidermis relationship: adjacent_to UBERON:0002067 ! dermis @@ -176809,6 +177640,7 @@ xref: DHBA:10556 xref: http://en.wikipedia.org/wiki/Rostral_migratory_stream xref: PBA:128012584 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0002264 {source="MP-modified"} ! olfactory bulb relationship: connects UBERON:0004922 ! postnatal subventricular zone relationship: part_of UBERON:0001893 ! telencephalon @@ -177050,6 +177882,7 @@ synonym: "lateral recess of diencephalic ventricle" EXACT [ZFIN:ZDB-PUB-091221-2 synonym: "lateral recesses" RELATED PLURAL [ZFA:0000231] xref: TAO:0000231 xref: ZFA:0000231 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 {source="ZFA"} ! anatomical space relationship: part_of UBERON:0002286 {source="ZFA"} ! third ventricle @@ -177146,6 +177979,7 @@ xref: AAO:0010779 xref: TAO:0001638 xref: VSAO:0000308 xref: ZFA:0001630 +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0007842 {source="VSAO"} ! membrane bone relationship: develops_from UBERON:0002222 {source="ZFA"} ! perichondrium relationship: participates_in GO:0036073 {source="VSAO"} ! perichondral ossification @@ -177174,6 +178008,7 @@ synonym: "electrosensory ampullary organ" EXACT [] xref: AAO:0001006 xref: TAO:0002104 is_a: UBERON:0003103 {source="TAO"} ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0035555 ! lateral line sense organ relationship: capable_of GO:0050964 ! detection of electrical stimulus involved in electroception relationship: develops_from UBERON:0009128 {gci_relation="part_of", gci_filler="NCBITaxon:32443", source="https://doi.org/10.1038/ncomms1502"} ! lateral line placode @@ -177368,6 +178203,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3241 xref: http://www.snomedbrowser.com/Codes/Details/279252006 xref: MBA:453 xref: MESH:A08.186.211.730.885.213.670.675 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="NIFSTD"} ! functional part of brain relationship: capable_of_part_of NBO:0000308 ! sensation behavior relationship: part_of UBERON:0002581 {source="BTO"} ! postcentral gyrus @@ -177493,6 +178329,7 @@ xref: BTO:0000370 xref: GO:0097099 xref: http://en.wikipedia.org/wiki/Albumen xref: ncithesaurus:Egg_White +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: part_of UBERON:0007379 ! shelled egg relationship: protects UBERON:0007378 ! egg yolk @@ -177521,6 +178358,7 @@ xref: FMA:27360 xref: http://www.snomedbrowser.com/Codes/Details/201712001 xref: MA:0003168 is_a: UBERON:0000353 {source="FMA"} ! parenchyma +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 {source="FMA"} ! lung @@ -177662,6 +178500,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/184916009 xref: NCIT:C40373 xref: UMLS:C0225740 {source="ncithesaurus:Lingula"} is_a: UBERON:0000063 {source="FMA"} ! organ subunit +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0008952 {source="ISBN:0123813611"} ! upper lobe of left lung [Term] @@ -177986,6 +178825,7 @@ synonym: "parenchyma of kidney" EXACT [FMA:15574] xref: BTO:0003604 xref: FMA:15574 xref: http://www.snomedbrowser.com/Codes/Details/29704000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000353 {source="FMA"} ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002113 ! kidney @@ -178105,7 +178945,7 @@ def: "The tissues which attach the third phalanx to the hoof wall." [BTO:0003997 synonym: "hoof laminae" RELATED [BTO:0003997] xref: BTO:0003997 xref: http://www.snomedbrowser.com/Codes/Details/370743008 -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: connects UBERON:5106050 ! digit 3 digitopodial skeleton relationship: part_of UBERON:0008963 {source="BTO"} ! hoof @@ -178121,6 +178961,7 @@ xref: BTO:0004149 xref: FMA:17028 xref: http://www.snomedbrowser.com/Codes/Details/18074002 xref: Ischial:spine +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013706 ! bone spine intersection_of: UBERON:0013706 ! bone spine intersection_of: part_of UBERON:0001274 ! ischium @@ -178138,6 +178979,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/256591004 xref: NCIT:C34253 xref: UMLS:C0230984 {source="ncithesaurus:Placental_Membrane"} is_a: UBERON:0000158 ! membranous layer +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: adjacent_to UBERON:0000922 ! embryo relationship: part_of UBERON:0001987 {source="BTO"} ! placenta @@ -178267,6 +179109,7 @@ xref: FMA:312260 xref: http://www.snomedbrowser.com/Codes/Details/280868008 xref: MA:0001239 is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 {source="MA"} ! ciliary body [Term] @@ -178422,6 +179265,7 @@ synonym: "ampullary sulcus" EXACT [] xref: FMA:74584 xref: http://www.snomedbrowser.com/Codes/Details/368954006 xref: MA:0002835 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear relationship: part_of UBERON:0004043 {source="MA"} ! semicircular canal ampulla @@ -178666,6 +179510,7 @@ comment: Dunker (1978) coined the terms ediculae or faveoli to describe the unit synonym: "edicula" RELATED SENSU [http://www.ncbi.nlm.nih.gov/pubmed/12625309] synonym: "faveoli" RELATED PLURAL [] synonym: "lung faveolus" EXACT [] +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0002048 ! lung @@ -178783,6 +179628,7 @@ synonym: "avian vocal organ" RELATED [] synonym: "syrinx" RELATED [] xref: http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy) xref: NCIT:C111323 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034681 ! vocal organ relationship: capable_of_part_of GO:0071625 ! vocalization behavior relationship: only_in_taxon NCBITaxon:8782 ! Aves @@ -178795,6 +179641,7 @@ def: "An anatomical wall that is part of a syrinx organ." [OBOL:automatic] synonym: "syrinx organ wall" EXACT [] synonym: "wall of syrinx" EXACT [http://en.wikipedia.org/wiki/Syrinx_(bird_anatomy)] is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0009074 ! syrinx organ relationship: part_of UBERON:0009074 ! syrinx organ @@ -178824,6 +179671,7 @@ id: UBERON:0009089 name: inner medulla vasa recta descending limb xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta [Term] @@ -178831,6 +179679,7 @@ id: UBERON:0009090 name: outer medulla vasa recta descending limb xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta [Term] @@ -178838,6 +179687,7 @@ id: UBERON:0009091 name: vasa recta ascending limb xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta [Term] @@ -178845,6 +179695,7 @@ id: UBERON:0009092 name: inner medulla vasa recta ascending limb xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta [Term] @@ -178852,6 +179703,7 @@ id: UBERON:0009093 name: outer medulla vasa recta ascending limb xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta [Term] @@ -178860,6 +179712,7 @@ name: tip of renal papilla synonym: "papillary tip" EXACT [KUPO:0001009] synonym: "papillary tips" EXACT PLURAL [KUPO:0001009] xref: KUPO:0001009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001228 {source="KUPO"} ! renal papilla @@ -178920,6 +179773,7 @@ relationship: part_of UBERON:0009101 ! ammocoete id: UBERON:0009100 name: nephric fold comment: Lymphocytes are also abundant in the lamprey kidney, where large populations are intermingled around the renal tubules +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0009101 ! ammocoete @@ -179074,7 +179928,6 @@ xref: EFO:0000229 xref: TAO:0001198 xref: XAO:0004208 xref: ZFA:0001198 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002546 ! cranial placode is_a: UBERON:0011814 {source="NCBIBook:NBK53175"} ! non-neurogenic ectodermal placode relationship: develops_from UBERON:0005497 {source="ZFA"} ! non-neural ectoderm @@ -179183,6 +180036,7 @@ id: UBERON:0009130 name: dorsal meso-duodenum xref: http://www.snomedbrowser.com/Codes/Details/361433003 xref: RETIRED_EHDAA2:0000411 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="EHDAA2"} ! embryonic structure relationship: part_of UBERON:0005712 {source="EHDAA2"} ! midgut duodenum mesentery @@ -179321,6 +180175,7 @@ name: pharyngeal region of foregut synonym: "pharyngeal region" EXACT [EMAPA:16549] xref: EMAPA:16549 xref: RETIRED_EHDAA2:0001454 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001041 {source="EHDAA2"} ! foregut @@ -179340,6 +180195,7 @@ xref: NCIT:C34178 xref: UMLS:C1517292 {source="ncithesaurus:Foramen_Primum"} xref: VHOG:0001470 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004154 ! atrial septum primum relationship: part_of UBERON:0004154 ! atrial septum primum @@ -179353,6 +180209,7 @@ xref: EMAPA:18015 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015060 ! sphenoid endochondral element intersection_of: UBERON:0015060 ! sphenoid endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -179382,6 +180239,7 @@ xref: EHDAA2:0001888 is_a: UBERON:0003932 ! cartilage element of chondrocranium is_a: UBERON:0005863 {source="EHDAA2"} ! cartilaginous condensation is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015060 ! sphenoid endochondral element intersection_of: UBERON:0015060 ! sphenoid endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue @@ -179460,6 +180318,7 @@ id: UBERON:0009199 name: facial suture def: "Any suture between facial bones." [GO:0097096] is_a: UBERON:0009198 ! craniofacial suture +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0009198 ! craniofacial suture intersection_of: connects UBERON:0003462 {minCardinality="2"} ! facial bone relationship: connects UBERON:0003462 {notes="between two adjacent facial bones"} ! facial bone @@ -179496,6 +180355,7 @@ id: UBERON:0009202 name: vasa recta descending limb xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta [Term] @@ -179565,6 +180425,7 @@ id: UBERON:0009207 name: geschmacksstreifen def: "Area on the rostral portion of the soft palate rich in tastebuds (Miller and Spangler 1982)." [http://www.ncbi.nlm.nih.gov/pubmed/19295142] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001716 ! secondary palate [Term] @@ -179687,6 +180548,7 @@ def: "The posterior portion of the sphenoid bone developed in five separate part xref: FMA:321633 xref: http://www.snomedbrowser.com/Codes/Details/95950009 xref: Postsphenoid +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone relationship: part_of UBERON:0001677 {source="cjm"} ! sphenoid bone @@ -179703,6 +180565,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226952 xref: http://www.snomedbrowser.com/Codes/Details/66938003 xref: NCIT:C32482 xref: UMLS:C0226952 {source="ncithesaurus:Dorsum_of_the_Tongue"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 {source="FMA"} ! tongue @@ -179791,6 +180654,7 @@ subset: emapa_ehdaa2 synonym: "early midgut associated mesenchyme" EXACT [EHDAA2:0001186] xref: EHDAA2:0001186 xref: EMAPA:16256 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue relationship: develops_from UBERON:0010378 {source="EHDAA2"} ! mesenchyme from splanchnopleure relationship: part_of UBERON:0001045 ! midgut @@ -179828,6 +180692,7 @@ synonym: "cavity of the pericardio-peritoneal canal" EXACT [VHOG:0000564] xref: EHDAA2:0001441 xref: EMAPA:16283 xref: VHOG:0000564 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 ! tube lumen intersection_of: UBERON:0005082 ! tube lumen intersection_of: part_of UBERON:0006275 ! pericardio-peritoneal canal @@ -179840,6 +180705,7 @@ def: "Mesenchyme that is part of a foregut-midgut junction." [OBOL:automatic] subset: emapa_ehdaa2 xref: EHDAA2:0000570 xref: EMAPA:16364 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0006235 ! foregut-midgut junction @@ -179981,6 +180847,7 @@ subset: emapa_ehdaa2 synonym: "hindgut associated mesenchyme" EXACT [EHDAA2:0000780] xref: EHDAA2:0000780 xref: EMAPA:16716 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001046 ! hindgut @@ -179997,6 +180864,7 @@ synonym: "principal bronchus mesenchyme" RELATED [EMAPA:16850] xref: EHDAA2:0001045 xref: EMAPA:16850 is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002182 ! main bronchus relationship: part_of UBERON:0002182 ! main bronchus @@ -180009,6 +180877,7 @@ subset: emapa_ehdaa2 synonym: "trachea associated mesenchyme" EXACT [EHDAA2:0002067] xref: EHDAA2:0002067 xref: EMAPA:16854 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0003104 ! mesenchyme @@ -180060,6 +180929,7 @@ xref: FMA:313717 is_a: UBERON:0000490 ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006757 ! lateral lingual swelling relationship: part_of UBERON:0006757 ! lateral lingual swelling @@ -180090,6 +180960,7 @@ synonym: "mesenchyme of maxillary prominence" EXACT [https://orcid.org/0000-0002 xref: EHDAA2:0001071 xref: EMAPA:17361 xref: FMA:312691 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0005291 ! embryonic tissue intersection_of: UBERON:0003104 ! mesenchyme @@ -180454,6 +181325,7 @@ id: UBERON:0009571 name: ventral midline def: "In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate." [GOC:bf, GOC:go_curators, http://www.ncbi.nlm.nih.gov/pubmed/12075342] xref: FBbt:00000093 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 {source="FMA"} ! embryonic structure relationship: only_in_taxon NCBITaxon:33213 ! Bilateria relationship: part_of UBERON:0001016 ! nervous system @@ -180495,6 +181367,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0262332 xref: NCIT:C33656 xref: Sulcus:limitans xref: UMLS:C0262332 {source="ncithesaurus:Sulcus_Limitans"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002422 ! fourth ventricle @@ -180504,8 +181377,8 @@ name: medulla oblongata sulcus limitans def: "A sulcus limitans of neural tube that is part of a future medulla oblongata." [OBOL:automatic] xref: EHDAA2:0001100 xref: EMAPA:17561 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005478 ! sulcus limitans of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: part_of UBERON:0001896 ! medulla oblongata relationship: develops_from UBERON:0009578 {source="EHDAA2"} ! myelencephalon sulcus limitans @@ -180518,6 +181391,7 @@ def: "A sulcus limitans of neural tube that is part of a future metencephalon." xref: EHDAA2:0001161 xref: EMAPA:17567 is_a: UBERON:0005478 ! sulcus limitans of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: part_of UBERON:0010092 ! future metencephalon relationship: part_of UBERON:0010092 ! future metencephalon @@ -180528,6 +181402,7 @@ name: myelencephalon sulcus limitans def: "A sulcus limitans of neural tube that is part of a future myelencephalon." [OBOL:automatic] xref: EHDAA2:0001945 is_a: UBERON:0005478 ! sulcus limitans of neural tube +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005478 ! sulcus limitans of neural tube intersection_of: part_of UBERON:0010096 ! future myelencephalon relationship: part_of UBERON:0010096 ! future myelencephalon @@ -180857,7 +181732,7 @@ name: forebrain midbrain boundary neural plate synonym: "diencephalic-mesencephalic boundary neural plate" EXACT [ZFA:0007020] xref: TAO:0007020 xref: ZFA:0007020 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 {source="ZFA"} ! anatomical junction relationship: develops_from UBERON:0007288 {source="ZFA"} ! presumptive forebrain midbrain boundary relationship: part_of UBERON:0003056 {source="ZFA"} ! pre-chordal neural plate @@ -180883,7 +181758,6 @@ synonym: "midbrain-hindbrain boundary neural plate" EXACT [ZFA:0007044] xref: TAO:0007044 xref: ZFA:0007044 is_a: UBERON:0006598 ! presumptive structure -relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0006238 ! future brain relationship: develops_from UBERON:0007281 ! presumptive midbrain hindbrain boundary relationship: immediate_transformation_of UBERON:0007281 {notes="https://github.com/obophenotype/uberon/issues/438", source="Bgee:AN"} ! presumptive midbrain hindbrain boundary @@ -180927,6 +181801,7 @@ synonym: "somitomeric mesoderm" RELATED [] xref: EHDAA2:0000736 xref: EHDAA:364 xref: EMAPA:16171 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005253 {source="EHDAA2"} ! head mesenchyme @@ -180937,6 +181812,7 @@ name: trunk paraxial mesoderm synonym: "trunk and cervical paraxial mesenchyme" EXACT [EHDAA2:0002094] synonym: "trunk paraxial mesenchyme" RELATED [https://github.com/obophenotype/uberon/issues/30] xref: EHDAA2:0002094 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005256 ! trunk mesenchyme relationship: part_of UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0005256 {source="EHDAA2"} ! trunk mesenchyme @@ -181309,6 +182185,7 @@ xref: MA:0001252 xref: NCIT:C49226 xref: UMLS:C1707991 {source="ncithesaurus:Eyelid_Subcutaneous_Connective_Tissue"} is_a: UBERON:0003581 ! eyelid connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003581 ! eyelid connective tissue intersection_of: part_of UBERON:0002072 ! hypodermis relationship: adjacent_to UBERON:0001457 ! skin of eyelid @@ -181328,6 +182205,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1511525 xref: MA:0001650 xref: NCIT:C32385 xref: UMLS:C1511525 {source="ncithesaurus:Cortical_Arch"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002189 {source="MA"} ! outer cortex of kidney @@ -181344,6 +182222,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245251000 xref: MA:0001680 xref: NCIT:C49273 xref: UMLS:C1709901 {source="ncithesaurus:Renal_Tubule_Basement_Membrane"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0001231 ! nephron tubule @@ -181360,6 +182239,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1707051 xref: MA:0001832 xref: NCIT:C49208 xref: UMLS:C1707051 {source="ncithesaurus:Bronchus_Basement_Membrane"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0002185 ! bronchus @@ -181375,6 +182255,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C1710455 xref: MA:0001854 xref: NCIT:C49302 xref: UMLS:C1710455 {source="ncithesaurus:Trachea_Basement_Membrane"} +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015329 ! respiratory system basement membrane intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0003126 ! trachea @@ -181393,6 +182275,7 @@ xref: NCIT:C52848 xref: UMLS:C1706783 {source="ncithesaurus:Alveolar_Artery"} is_a: UBERON:0001637 {source="MA"} ! artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery relationship: part_of UBERON:0011595 ! jaw region @@ -181516,6 +182399,7 @@ def: "Ventral mesentery is the part of the peritoneum closest to the navel." [ht xref: EHDAA2:0004569 xref: http://www.snomedbrowser.com/Codes/Details/361430000 xref: Ventral:mesentery +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0009664 {source="EHDAA2"} ! gut mesentery @@ -181555,8 +182439,8 @@ name: nasal fin def: "The nasal fin is an epithelial seam that develops by fusion between the epithelial linings of the medial and lateral nasal swellings. Shortly after its formation the nasal fin regresses and is replaced by mesenchyme, with exception of its most posterior portion which remains as the bucconasal membrane." [https://doi.org/10.1002/aja.1001500308] xref: EHDAA2:0004548 xref: FMA:295940 -is_a: UBERON:0002424 ! oral epithelium is_a: UBERON:0005384 ! nasal cavity epithelium +is_a: UBERON:0011642 ! oral epithelium from ectoderm relationship: existence_ends_during UBERON:0000068 ! embryo stage relationship: part_of UBERON:0002424 {source="EHDAA2"} ! oral epithelium relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium @@ -181570,8 +182454,9 @@ xref: EHDAA2:0000188 xref: EHDAA:7840 xref: EHDAA:7984 xref: FMA:295942 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:0009671 {notes="posterior portion", source="EHDAA2"} ! nasal fin relationship: part_of UBERON:0000166 {source="EHDAA2"} ! oral opening relationship: part_of UBERON:0005384 {source="EHDAA2"} ! nasal cavity epithelium @@ -181644,7 +182529,6 @@ xref: EHDAA2:0001981 xref: EHDAA:1993 xref: EHDAA:2671 xref: EMAPA:16914 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013150 ! future brain vesicle relationship: develops_from UBERON:0006284 {source="EHDAA2"} ! early prosencephalic vesicle relationship: part_of UBERON:0001893 {source="EHDAA2"} ! telencephalon @@ -181796,7 +182680,6 @@ synonym: "epithelium of vermiform appendix" EXACT [FMA:63581] xref: CALOHA:TS-2062 xref: EHDAA2:0004561 xref: FMA:63581 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001278 ! epithelium of large intestine intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001154 ! vermiform appendix @@ -181811,8 +182694,8 @@ name: dorsal pancreas subset: organ_slim synonym: "pancreatis dorsalis" RELATED [] xref: EHDAA2:0001371 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: develops_from UBERON:0010375 {source="EHDAA2"} ! pancreas dorsal primordium relationship: has_developmental_contribution_from UBERON:0003923 {source="cjm"} ! dorsal pancreatic bud @@ -181824,8 +182707,8 @@ name: ventral pancreas subset: organ_slim synonym: "pancreatis ventralis" RELATED [] xref: EHDAA2:0001393 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002365 {source="EHDAA2"} ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005177 ! trunk region element relationship: develops_from UBERON:0010376 {source="EHDAA2"} ! pancreas ventral primordium relationship: has_developmental_contribution_from UBERON:0003924 {source="cjm"} ! ventral pancreatic bud @@ -181896,6 +182779,7 @@ def: "An anatomical cavity that surrounded_by a stomodeum." [OBOL:automatic] synonym: "lumen of stomatodaeum" EXACT [] synonym: "lumen of stomodeum" EXACT [] synonym: "stomatodeal cavity" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000930 ! stomodeum @@ -181915,6 +182799,7 @@ name: coronal organ def: "Mechanoreceptor organ found in oral siphon of botryllid ascidians, made of hair cells, similar to the vertebrate octavolateralis system. A possible candidate of the vertebrate lateral line." [https://doi.org/10.1002/jez.b.21013] subset: organ_slim xref: BSA:0000122 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ relationship: only_in_taxon NCBITaxon:7712 ! Tunicata relationship: part_of UBERON:0009720 ! oral siphon @@ -181933,7 +182818,6 @@ name: tunicate siphon def: "Tubular appendage for drawing or ejecting fluids." [http://orcid.org/0000-0002-6601-2165] synonym: "siphon" EXACT [BTO:0002056] xref: BTO:0002056 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0009894 ! siphon primordium @@ -182122,6 +183006,7 @@ synonym: "lymph node medullary sinusoid" RELATED [] synonym: "medullary sinus" BROAD [] xref: EMAPA:37898 {source="MA:th"} xref: FMA:312359 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit relationship: channel_for UBERON:0002391 ! lymph relationship: part_of UBERON:0002007 ! medulla of lymph node @@ -182133,6 +183018,7 @@ def: "The dense rope-like structures of lymphatic tissue located between the med subset: pheno_slim synonym: "medullary cord" BROAD [] xref: EMAPA:37897 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: adjacent_to UBERON:0009744 ! lymph node medullary sinus relationship: part_of UBERON:0002007 ! medulla of lymph node @@ -182176,6 +183062,7 @@ def: "The primordial embryonic connective tissue of the developing limbs, autopo subset: pheno_slim synonym: "limb mesoderm" RELATED [Geisha:syn, NCBITaxon:8782] xref: EMAPA:32705 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002101 ! limb @@ -182218,6 +183105,8 @@ xref: FMA:69086 xref: http://www.snomedbrowser.com/Codes/Details/68594002 xref: MA:0001887 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001235 {source="MA"} ! adrenal cortex [Term] @@ -182406,6 +183295,7 @@ subset: non_informative xref: EHDAA2:0004737 xref: FMA:9690 xref: http://www.snomedbrowser.com/Codes/Details/361996004 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005906 ! serous sac is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0005906 ! serous sac @@ -182459,6 +183349,7 @@ xref: DHBA:10173 xref: FMA:276189 xref: http://en.wikipedia.org/wiki/Dorsolateral_prefrontal_cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -182471,6 +183362,7 @@ xref: BTO:0004249 xref: FMA:271599 xref: http://en.wikipedia.org/wiki/Anterior_cingulate_cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022353 {source="lexical"} ! posterior cingulate cortex relationship: capable_of_part_of GO:0002027 {source="Wikipedia"} ! regulation of heart rate relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex @@ -182505,6 +183397,7 @@ xref: TAO:0001441 xref: ZFA:0001441 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip [Term] @@ -182523,6 +183416,7 @@ xref: TAO:0001442 xref: ZFA:0001442 is_a: UBERON:0000481 {source="ZFA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0003052 {source="ZFA-def"} ! midbrain-hindbrain boundary relationship: part_of UBERON:0005499 {source="ZFA"} ! rhombomere 1 relationship: part_of UBERON:0006215 {source="ZFA"} ! rhombic lip @@ -182604,6 +183498,7 @@ name: prostate field def: "A specific region of the urogenital sinus epithelium into the area in which the prostate gland will develop." [GO:0060515, GOC:dph, http://www.ncbi.nlm.nih.gov/pubmed/18977204] synonym: "prostate primordium" RELATED [] is_a: CARO:0000003 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0006598 ! presumptive structure is_a: UBERON:0007688 ! anlage @@ -182627,6 +183522,7 @@ xref: http://en.wikipedia.org/wiki/Zona_limitans_intrathalamica xref: TAO:0001344 xref: XAO:0004305 xref: ZFA:0001344 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0001900 ! ventral thalamus @@ -182686,6 +183582,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227813 xref: http://www.snomedbrowser.com/Codes/Details/279878007 xref: NCIT:C12316 xref: UMLS:C0227813 {source="ncithesaurus:Corpus_Uteri"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ @@ -182748,6 +183645,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228158 xref: http://www.snomedbrowser.com/Codes/Details/180933005 xref: NCIT:C32602 xref: UMLS:C0228158 {source="ncithesaurus:Fifth_Ventricle"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0004714 ! septum pellucidum @@ -182846,6 +183744,7 @@ relationship: part_of UBERON:0001008 ! renal system [Term] id: UBERON:0009867 name: Hatschek's diverticulum +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 ! primordium relationship: only_in_taxon NCBITaxon:7737 {source="Wikipedia"} ! Branchiostoma relationship: part_of UBERON:0001042 ! chordate pharynx @@ -182898,6 +183797,7 @@ synonym: "nephrogenic tissue" RELATED [] xref: EMAPA:27721 xref: http://www.gudmap.org/Images/Organ_Summaries/Metanephros/NZ.png xref: MA:0002996 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0001225 ! cortex of kidney @@ -182935,6 +183835,7 @@ synonym: "mesopodium skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "skeletal parts of mesopodium" EXACT [https://orcid.org/0000-0002-6601-2165] xref: VSAO:0005022 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0006716 ! mesopodium region @@ -183043,6 +183944,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227428 xref: http://www.snomedbrowser.com/Codes/Details/245444007 xref: NCIT:C32067 xref: UMLS:C0227428 {source="ncithesaurus:Anal_Column"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: has_quality PATO:0001910 ! folded relationship: part_of UBERON:0000159 ! anal canal @@ -183059,6 +183961,7 @@ xref: BTO:0001155 xref: EMAPA:37906 {source="MA:th"} xref: FMA:74299 xref: http://en.wikipedia.org/wiki/Bone_marrow_of_ovaryry_ray_(anatomy) +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 {source="FMA"} ! organ part relationship: contributes_to_morphology_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001225 {source="MP"} ! cortex of kidney @@ -183123,6 +184026,7 @@ synonym: "second heart field" EXACT [XAO:0004186] synonym: "SHF" RELATED [XAO:0004186] xref: XAO:0004186 is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage relationship: anterior_to UBERON:0004140 {source="http://www.ncbi.nlm.nih.gov/pubmed/17276708"} ! primary heart field @@ -183135,6 +184039,7 @@ id: UBERON:0009890 name: anterior intestinal portal def: "Opening of the foregut into the midgut." [http://www.drugs.com/dict/fovea-cardiaca.html] synonym: "fovea cardiaca" EXACT [http://www.drugs.com/dict/fovea-cardiaca.html] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit relationship: adjacent_to UBERON:0001041 ! foregut relationship: adjacent_to UBERON:0001046 ! hindgut @@ -183217,6 +184122,7 @@ name: pole of cerebral hemisphere def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole." [http://en.wikipedia.org/wiki/Poles_of_cerebral_hemispheres] xref: http://en.wikipedia.org/wiki/Poles_of_cerebral_hemispheres is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] @@ -183247,7 +184153,6 @@ xref: FMA:52611 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1403 xref: http://www.snomedbrowser.com/Codes/Details/280188009 xref: MBA:229 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004673 {source="FMA"} ! trigeminal nerve root relationship: develops_from UBERON:0002342 {source="Wikipedia"} ! neural crest @@ -183275,6 +184180,7 @@ xref: EFO:0003705 xref: TAO:0005042 xref: ZFA:0005042 is_a: UBERON:0000926 {source="ZFA"} ! mesoderm +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0003081 {source="ZFA"} ! lateral plate mesoderm [Term] @@ -183313,6 +184219,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0736382 xref: NCIT:C32894 xref: Renal:lobe xref: UMLS:C0736382 {source="ncithesaurus:Kidney_Lower_Lobe"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0009912 ! anatomical lobe intersection_of: UBERON:0009912 ! anatomical lobe intersection_of: part_of UBERON:0002113 ! kidney @@ -183355,8 +184262,8 @@ def: "An anatomical wall that is part of a ureter." [OBOL:automatic] synonym: "ureteral wall" EXACT [FMA:15888] xref: FMA:15888 xref: http://www.snomedbrowser.com/Codes/Details/279397004 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000056 ! ureter relationship: has_part UBERON:0005742 ! adventitia @@ -183369,6 +184276,7 @@ name: kidney corticomedullary boundary def: "The region demarcating the renal medulla from the surrounding cortex; end-stage renal failure may be associated with loss of the normal corticomedullary boundary." [MP:0011376] subset: pheno_slim xref: EMAPA:37886 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0000362 ! renal medulla @@ -183429,6 +184337,7 @@ is_a: UBERON:0009060 ! air sac [Term] id: UBERON:0009949 name: humeral diverticulum of clavicular air sac +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: continuous_with UBERON:0009948 ! clavicular air sac relationship: part_of UBERON:0000976 ! humerus @@ -183448,6 +184357,7 @@ xref: BAMS:MOB xref: Main_olfactory_bulb xref: MBA:507 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 {source="cjm"} ! olfactory bulb [Term] @@ -183462,6 +184372,8 @@ xref: MA:0003149 xref: MBA:10702 xref: Subgranular:zone is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contains_process GO:0022008 {notes="granule cells", source="Wikipedia"} ! neurogenesis relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation @@ -183501,7 +184413,6 @@ xref: Neurogenic:placodes xref: TAO:0001309 xref: XAO:0004620 xref: ZFA:0001309 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002546 {source="cjm"} ! cranial placode intersection_of: UBERON:0005085 ! ectodermal placode intersection_of: has_potential_to_developmentally_contribute_to CL:0000540 ! neuron @@ -183576,6 +184487,7 @@ synonym: "inner circular muscle layer of esophagus" EXACT [FMA:67605] xref: EMAPA:37523 {source="MA:th"} xref: FMA:67605 xref: MA:0001574 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0001043 ! esophagus @@ -183591,6 +184503,7 @@ synonym: "outer longitudinal muscle layer of esophagus" EXACT [FMA:63573] xref: EMAPA:37524 {source="MA:th"} xref: FMA:63573 xref: MA:0001575 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat relationship: part_of UBERON:0002112 {source="MA"} ! smooth muscle of esophagus relationship: part_of UBERON:0003832 {source="FMA"} ! esophagus muscle @@ -183667,6 +184580,7 @@ name: primitive superior sagittal sinus xref: EHDAA2:0001527 xref: EHDAA:9876 xref: EMAPA:18636 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006615 {source="cjm"} ! venous sinus relationship: develops_from UBERON:0006282 {source="EHDAA2"} ! primary head vein relationship: part_of UBERON:0005486 {source="EHDAA2"} ! venous dural sinus @@ -183762,6 +184676,7 @@ def: "An anatomical cavity that surrounded_by a Rathke's pouch." [OBOL:automatic synonym: "Rathkes pouch invagination" NARROW [EHDAA2:0004138] xref: EHDAA2:0004138 xref: EMAPA:25037 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen is_a: UBERON:0007473 ! lumen of epithelial sac intersection_of: UBERON:0000464 ! anatomical space @@ -183858,6 +184773,7 @@ xref: FMA:32855 xref: galen:FemoralCondyle xref: http://www.snomedbrowser.com/Codes/Details/304912006 xref: NCIT:C114186 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -183907,6 +184823,7 @@ xref: FMA:32867 xref: galen:LateralFemoralEpicondyle xref: http://en.wikipedia.org/wiki/Lateral_epicondyle_of_the_femur xref: http://www.snomedbrowser.com/Codes/Details/209275007 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle disjoint_from: UBERON:0009987 {source="lexical"} ! medial epicondyle of femur @@ -183924,6 +184841,7 @@ xref: FMA:32864 xref: galen:MedialFemoralEpicondyle xref: http://en.wikipedia.org/wiki/Medial_epicondyle_of_the_femur xref: http://www.snomedbrowser.com/Codes/Details/209172001 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 {source="FMA"} ! epicondyle relationship: part_of UBERON:0004406 {source="FMA"} ! distal epiphysis of femur @@ -183937,6 +184855,7 @@ synonym: "condylus humeri" EXACT LATIN [] synonym: "humeral condyle" EXACT [FMA:23377] xref: FMA:23377 xref: http://www.snomedbrowser.com/Codes/Details/361778001 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -183951,6 +184870,7 @@ synonym: "tibial condyle" EXACT [AAO:0000899] xref: AAO:0000899 xref: http://www.snomedbrowser.com/Codes/Details/182062002 xref: Tibial:condyle +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -184060,8 +184980,8 @@ subset: pheno_slim synonym: "NEB" EXACT [MP:0010921] synonym: "pulmonary neuroepithelial body" EXACT [MP:0010921] xref: EMAPA:37943 {source="MA:th"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 {source="MP"} ! anatomical structure +is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0000115 ! lung epithelium relationship: has_part CL:0000165 ! neuroendocrine cell relationship: part_of UBERON:0000115 ! lung epithelium @@ -184073,7 +184993,7 @@ def: "The vascularized and branched structures arising from the rodent trophobla subset: pheno_slim synonym: "placental labyrinth villi" RELATED PLURAL [] synonym: "villous of placental labyrinth" EXACT [] -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0003946 ! placenta labyrinth relationship: part_of UBERON:0003946 {source="MP"} ! placenta labyrinth @@ -184109,7 +185029,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/256491001 xref: NCIT:C34135 xref: Placental:cotyledon xref: UMLS:C0242769 {source="ncithesaurus:Cotyledon"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000478 ! extraembryonic structure relationship: has_part UBERON:0007106 ! chorionic villus relationship: part_of UBERON:0002450 ! decidua @@ -184215,6 +185134,7 @@ name: upper beak synonym: "maxillary beak" RELATED [] synonym: "rostrum maxillare" RELATED [] synonym: "upper mandible" RELATED SENSU [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001709 ! upper jaw region relationship: part_of UBERON:0005094 ! beak @@ -184225,6 +185145,7 @@ name: lower beak synonym: "lower mandible" RELATED SENSU [] synonym: "mandibular beak" RELATED [] synonym: "rostrum mandibulare" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001710 ! lower jaw region relationship: part_of UBERON:0005094 ! beak @@ -184250,6 +185171,7 @@ id: UBERON:0010015 name: ventral patch of Leydig's organ def: "The ventralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000040 ! Leydig's organ [Term] @@ -184259,6 +185181,7 @@ def: "Coiled structure in the lumen of the small intestine that increases the le synonym: "intestinal spiral valve" EXACT [] synonym: "spiral valve" BROAD [] xref: Spiral:valve +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003978 {source="cjm"} ! valve is_a: UBERON:0035118 ! material entity in digestive tract disjoint_from: UBERON:0010017 ! spiral valve of cystic duct @@ -184280,6 +185203,7 @@ xref: FMA:15855 xref: http://en.wikipedia.org/wiki/Spiral_valves_of_Heister xref: http://www.snomedbrowser.com/Codes/Details/270125000 is_a: UBERON:0003978 {source="FMA"} ! valve +is_a: UBERON:0004119 ! endoderm-derived structure disjoint_from: UBERON:0010018 ! spiral valve of conus arteriosus relationship: part_of UBERON:0001152 ! cystic duct @@ -184290,6 +185214,7 @@ def: "The spiral valve alternately blocks & unblocks the entrances to the left a xref: AAO:0010251 xref: http://cwx.prenhall.com/bookbind/pubbooks/martini10/chapter21/medialib/Kardong_fig_12_29.html is_a: UBERON:0003978 {source="cjm"} ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: only_in_taxon NCBITaxon:8287 {evidence="NAS"} ! Sarcopterygii relationship: part_of UBERON:0003983 {source="AAO"} ! conus arteriosus @@ -184337,9 +185262,8 @@ synonym: "dorsal branchial pouch 1 endoderm" RELATED [] synonym: "dorsal elongation of first pouch endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 1" EXACT [] synonym: "dorsal pharyngeal pouch 1 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 [Term] @@ -184350,9 +185274,8 @@ synonym: "ventral branchial pouch 1 endoderm" RELATED [] synonym: "ventral elongation of first pouch endoderm" RELATED [] synonym: "ventral pharyngeal pouch 1" EXACT [] synonym: "ventral pharyngeal pouch 1 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007122 ! pharyngeal pouch 1 [Term] @@ -184363,9 +185286,8 @@ synonym: "dorsal branchial pouch 2 endoderm" RELATED [] synonym: "dorsal elongation of second pouch endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 2" EXACT [] synonym: "dorsal pharyngeal pouch 2 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 [Term] @@ -184376,9 +185298,8 @@ synonym: "ventral branchial pouch 2 endoderm" RELATED [] synonym: "ventral elongation of second pouch endoderm" RELATED [] synonym: "ventral pharyngeal pouch 2" EXACT [] synonym: "ventral pharyngeal pouch 2 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007123 ! pharyngeal pouch 2 [Term] @@ -184394,8 +185315,8 @@ synonym: "dorsal wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002-6 xref: EHDAA2:0000409 xref: EMAPA:16758 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 [Term] @@ -184411,8 +185332,8 @@ synonym: "ventral wing of pharyngeal pouch 3" EXACT [http://orcid.org/0000-0002- xref: EHDAA2:0002173 xref: EMAPA:16759 is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007124 {source="EHDAA2"} ! pharyngeal pouch 3 [Term] @@ -184422,9 +185343,8 @@ synonym: "dorsal 4th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 4 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 4" EXACT [] synonym: "dorsal pharyngeal pouch 4 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] @@ -184434,9 +185354,8 @@ synonym: "ventral 4th branchial pouch" EXACT [] synonym: "ventral branchial pouch 4 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 4" EXACT [] synonym: "ventral pharyngeal pouch 4 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007125 ! pharyngeal pouch 4 [Term] @@ -184446,9 +185365,8 @@ synonym: "dorsal 5th branchial pouch" EXACT [] synonym: "dorsal branchial pouch 5 endoderm" RELATED [] synonym: "dorsal pharyngeal pouch 5" EXACT [] synonym: "dorsal pharyngeal pouch 5 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] @@ -184458,9 +185376,8 @@ synonym: "ventral 5th branchial pouch" EXACT [] synonym: "ventral branchial pouch 5 endoderm" RELATED [] synonym: "ventral pharyngeal pouch 5" EXACT [] synonym: "ventral pharyngeal pouch 5 endoderm" RELATED [] -is_a: UBERON:0000490 ! unilaminar epithelium +is_a: UBERON:0003258 ! endoderm of foregut is_a: UBERON:0005291 ! embryonic tissue -is_a: UBERON:0015833 ! foregut epithelium relationship: part_of UBERON:0007126 ! pharyngeal pouch 5 [Term] @@ -184584,7 +185501,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0017130 xref: http://www.snomedbrowser.com/Codes/Details/268338004 xref: NCIT:C32643 xref: UMLS:C0017130 {source="ncithesaurus:Fundic_Gland"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000325 ! gastric gland is_a: UBERON:0000414 ! mucous gland intersection_of: UBERON:0000325 ! gastric gland @@ -184604,6 +185520,7 @@ subset: grouping_class xref: BSA:0000123 xref: TADS:0000172 xref: TGMA:0001041 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001555 ! digestive tract relationship: part_of UBERON:0005409 ! alimentary part of gastrointestinal system @@ -184718,6 +185635,7 @@ id: UBERON:0010051 name: dorsal patch of Leydig's organ def: "The dosralmost of the two bodies of the elasmopbranch hemopoietic organ betweean the esophageal mucosa and muscularis." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000040 ! Leydig's organ [Term] @@ -184790,6 +185708,7 @@ synonym: "hypobranchial eminence" EXACT [EMAPA:17352, OBOL:automatic] xref: EHDAA2:0000799 xref: EMAPA:17352 xref: http://www.snomedbrowser.com/Codes/Details/361420009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure is_a: UBERON:0010188 {source="EHDAA2"} ! protuberance relationship: part_of UBERON:0010056 {source="EHDAA2"} ! future tongue @@ -184821,6 +185740,7 @@ synonym: "pharyngeal tubal ostium" EXACT [FMA:54979] xref: FMA:54979 xref: http://en.wikipedia.org/wiki/Pharyngeal_opening_of_auditory_tube xref: http://www.snomedbrowser.com/Codes/Details/368945008 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: continuous_with UBERON:0010061 ! lumen of nasopharynx relationship: part_of UBERON:0001042 ! chordate pharynx @@ -184832,6 +185752,7 @@ synonym: "nasopharyngeal luman" EXACT [] synonym: "nasopharynx cavity" EXACT [] synonym: "nasopharynx lumen" EXACT [FMA:55094] xref: FMA:55094 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001731 ! cavity of pharynx @@ -184917,6 +185838,7 @@ synonym: "outer layer of tympanic membrane" EXACT [] synonym: "tympanic membrane external acoustic meatus epithelial component" EXACT [https://orcid.org/0000-0002-6601-2165] xref: FMA:56819 xref: http://www.snomedbrowser.com/Codes/Details/39725007 +is_a: UBERON:0005911 ! endo-epithelium is_a: UBERON:0009647 ! tympanic membrane epithelium is_a: UBERON:0015814 ! outer ear epithelium intersection_of: UBERON:0009647 ! tympanic membrane epithelium @@ -184944,6 +185866,7 @@ name: layer of tympanic membrane subset: grouping_class synonym: "tympanic membrane layer" EXACT [FMA:56732] xref: FMA:56732 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 ! tympanic membrane @@ -184966,6 +185889,7 @@ id: UBERON:0010075 name: sacral neural crest def: "One of the 5 distinct and partially overlapping functional domains of the premigratory neural crest. The vagal and sacral neural crest cells develop into the ganglia of the enteric nervous system, also known as the parasympathetic ganglia." [http://www.ncbi.nlm.nih.gov/books/NBK10065/, XB:curator] xref: XAO:0004192 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0002342 ! neural crest @@ -184976,6 +185900,7 @@ def: "Tissue cavity consisting of intercommunicating trabecular spaces in the ca synonym: "trabecular network of bone tissue" EXACT [FMA:259332] synonym: "trabecular space network" RELATED [FMA:259332] xref: FMA:259332 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0008867 ! trabecular network of bone @@ -185071,6 +185996,7 @@ name: future hindbrain meninx def: "A multi-tissue structure that has the potential to develop into a meninx of hindbrain." [OBOL:automatic] synonym: "future hindbrain meninges" EXACT [EHDAA2:0000610] xref: EHDAA2:0000610 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 ! dense mesenchyme tissue is_a: UBERON:0007645 ! future meninx @@ -185107,7 +186033,6 @@ id: UBERON:0010123 name: future facial nucleus def: "A gray matter that has the potential to develop into a facial nucleus." [OBOL:automatic] xref: EHDAA2:0004639 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0000127 ! facial nucleus @@ -185118,7 +186043,6 @@ id: UBERON:0010124 name: future inferior salivatory nucleus def: "A gray matter that has the potential to develop into a inferior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004643 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0002872 ! inferior salivatory nucleus @@ -185129,7 +186053,6 @@ id: UBERON:0010125 name: future superior salivatory nucleus def: "A gray matter that has the potential to develop into a superior salivatory nucleus." [OBOL:automatic] xref: EHDAA2:0004644 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0002149 ! superior salivatory nucleus @@ -185140,7 +186063,6 @@ id: UBERON:0010126 name: future nucleus ambiguus def: "A gray matter that has the potential to develop into a nucleus ambiguus." [OBOL:automatic] xref: EHDAA2:0004647 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002020 ! gray matter intersection_of: UBERON:0002020 ! gray matter intersection_of: has_potential_to_develop_into UBERON:0001719 ! nucleus ambiguus @@ -185420,6 +186342,7 @@ synonym: "duct of greater vestibular gland" EXACT [FMA:20088] synonym: "greater vestibular gland duct" EXACT [FMA:20088] xref: Bartholin's:duct xref: FMA:20088 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011831 ! duct of vestibular gland intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000460 ! major vestibular gland @@ -185435,6 +186358,7 @@ synonym: "duct of bulbo-urethral gland" EXACT [FMA:20091] synonym: "ductus glandulae bulbourethralis" EXACT LATIN [FMA:TA] xref: FMA:20091 xref: http://www.snomedbrowser.com/Codes/Details/279709005 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005904 ! duct of male reproductive system intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002366 ! bulbo-urethral gland @@ -185456,6 +186380,7 @@ id: UBERON:0010153 name: rumen papilla synonym: "rumen papillae" EXACT PLURAL [] xref: http://www.snomedbrowser.com/Codes/Details/43386000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0008285 ! rumen epithelium @@ -185571,6 +186496,7 @@ def: "An anatomical cavity that surrounded_by a blood vessel." [OBOL:automatic] synonym: "blood vessel lumen" EXACT [] xref: FMA:312610 xref: http://www.snomedbrowser.com/Codes/Details/91747007 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001981 ! blood vessel @@ -185709,6 +186635,7 @@ name: region of neural crest xref: EMAPA:32737 xref: TAO:0000045 xref: ZFA:0000045 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002342 ! neural crest @@ -185744,6 +186671,7 @@ xref: BTO:0004695 xref: FMA:3740 xref: http://www.snomedbrowser.com/Codes/Details/362032000 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta relationship: part_of UBERON:0001496 {source="FMA"} ! ascending aorta @@ -185754,6 +186682,7 @@ def: "The point in the ascending aorta where the aortic sinuses end and the aort subset: pheno_slim synonym: "sinotubular ridge" EXACT [MP:0011572] xref: EMAPA:37951 {source="MA:th"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: contributes_to_morphology_of UBERON:0001496 ! ascending aorta relationship: part_of UBERON:0001496 {source="MP"} ! ascending aorta @@ -185764,6 +186693,7 @@ name: Schweigger-Seidel sheath def: "A phagocytic sleeve that is part of a sheathed arteriole of the spleen, and is sometimes referred to as a splenic ellipsoid. It is a spindle-shaped thickening in the walls of the second part of the arterial branches forming the penicilli in the spleen." [http://en.wikipedia.org/wiki/Schweigger-Seidel_sheath, PMCID:PMC3204613] xref: Schweigger-Seidel:sheath is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0002106 ! spleen @@ -185823,6 +186753,7 @@ def: "A trabecula that is part of a liver." [GO:0060344, OBOL:automatic] synonym: "hepatic trabecula" RELATED [] synonym: "liver trabeculae" EXACT PLURAL [] is_a: UBERON:0000440 ! trabecula +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000440 ! trabecula intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver @@ -185982,6 +186913,7 @@ xref: EHDAA2:0000306 xref: EMAPA:17855 xref: FMA:69323 is_a: UBERON:0005396 ! carotid artery segment +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches [Term] @@ -186031,6 +186963,7 @@ synonym: "tail vasculature" RELATED [ZFA:0005037] xref: TAO:0005037 xref: XAO:0004151 xref: ZFA:0005037 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0007812 ! post-anal tail @@ -186087,6 +187020,7 @@ synonym: "semilunar fold of conjunctiva" EXACT [FMA:59045] xref: FMA:59045 xref: http://en.wikipedia.org/wiki/Plica_semilunaris_of_conjunctiva xref: http://www.snomedbrowser.com/Codes/Details/280686009 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005160 {source="Wikipedia"} ! vestigial structure relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia relationship: part_of UBERON:0001811 {source="FMA"} ! conjunctiva @@ -186135,6 +187069,7 @@ def: "Apparatus located between the lungs and the buccal cavity. This apparatus synonym: "laryngeal cartilage system" EXACT [EHDAA2:0000904] xref: AAO:0000267 xref: EHDAA2:0000904 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034921 ! multi organ part structure relationship: composed_primarily_of UBERON:0001739 ! laryngeal cartilage @@ -186144,6 +187079,7 @@ relationship: part_of UBERON:0008895 ! splanchnocranium [Term] id: UBERON:0010213 name: laryngeal pre-cartilage condensation +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010221 {source="EHDAA2-abstracted"} ! laryngeal associated mesenchyme @@ -186161,6 +187097,7 @@ id: UBERON:0010215 name: arytenoid swellings def: "Paired primordial elevations, on either side of the embryonic larynx, within which the arytenoid cartilages are formed." [http://www.medilexicon.com/medicaldictionary.php?t=87317] xref: EHDAA2:0000146 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005856 {source="EHDAA2"} ! developing mesenchymal condensation is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0010221 {source="EHDAA2"} ! laryngeal associated mesenchyme @@ -186187,6 +187124,7 @@ id: UBERON:0010221 name: laryngeal associated mesenchyme comment: Many sources say: thyroid cartilage from arch 4 other laryngeal cartilage (cricoid/arytenoid) from 6? xref: EHDAA2:0004085 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0002539 {source="Wikipedia"} ! pharyngeal arch @@ -186262,6 +187200,7 @@ id: UBERON:0010228 name: ruminal fluid def: "A portion of organism substance that is produced a rumen." [OBOL:automatic] xref: BTO:0004789 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance intersection_of: UBERON:0000463 ! organism substance intersection_of: produced_by UBERON:0007365 ! rumen @@ -186339,6 +187278,7 @@ synonym: "thyroid stroma" EXACT [] xref: FMA:86304 xref: http://www.snomedbrowser.com/Codes/Details/157862000 is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002046 ! thyroid gland @@ -186399,6 +187339,7 @@ name: torus pylorus def: "A fleshy protuberance at the pylorus of some species such as ruminants and pigs, that projects into the lumen of the pyloric canal." [http://medical-dictionary.thefreedictionary.com/torus+pyloricus] synonym: "torus pyloricus" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/14214007 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001166 ! pylorus @@ -186412,7 +187353,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227374 xref: NCIT:C92438 xref: Spiral:colon xref: UMLS:C0227374 {source="ncithesaurus:Spiral_Colon"} -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000168 ! proximal-distal subdivision of colon relationship: continuous_with UBERON:0001157 ! transverse colon relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -186478,6 +187418,7 @@ xref: BTO:0001828 xref: Classification xref: http://www.snomedbrowser.com/Codes/Details/3034006 is_a: UBERON:0004868 ! tapetum lucidum of camera-type eye +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004868 ! tapetum lucidum of camera-type eye intersection_of: part_of UBERON:0001776 ! optic choroid relationship: adjacent_to UBERON:0000966 ! retina @@ -186557,6 +187498,7 @@ xref: FMA:49711 xref: http://en.wikipedia.org/wiki/Middle_meningeal_artery xref: http://www.snomedbrowser.com/Codes/Details/278100005 is_a: UBERON:0003474 ! meningeal artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -186581,6 +187523,7 @@ xref: UMLS:C0226187 {source="ncithesaurus:Anterior_Meningeal_Artery"} is_a: UBERON:0003474 ! meningeal artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0012318 {source="Wikipedia"} ! anterior ethmoidal artery relationship: part_of UBERON:0012318 ! anterior ethmoidal artery @@ -186624,8 +187567,8 @@ synonym: "pharyngeal arch 2 mesenchyme from neural crest" EXACT [] xref: EHDAA2:0000068 xref: EMAPA:16281 is_a: UBERON:0005689 ! 2nd arch mesenchyme -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest is_a: UBERON:0010359 ! pharyngeal arch mesenchyme from neural crest intersection_of: UBERON:0003104 ! mesenchyme intersection_of: develops_from UBERON:0002342 ! neural crest @@ -186756,6 +187699,7 @@ synonym: "operculum" BROAD [HP:0100954] xref: http://www.snomedbrowser.com/Codes/Details/362351003 xref: Operculum:(brain) is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 ! frontal lobe [Term] @@ -186793,7 +187737,6 @@ name: arthropod hepatopancreas def: "Digestive gland of crustaceans with functions approximately analogous to liver and pancreas of vertebrates - enzyme secretion, food absorption and storage." [BTO:0000597] synonym: "crustacean digestive gland" RELATED [] synonym: "midgut gland" RELATED [BTO:0000597] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005057 ! immune organ is_a: UBERON:0010264 ! hepatopancreas relationship: has_part CL:0000387 {source="http://www.ncbi.nlm.nih.gov/pubmed/18025161"} ! hemocyte (sensu Arthropoda) @@ -186817,6 +187760,7 @@ synonym: "internal part of filum terminale" EXACT [FMA:256524] xref: FMA:256524 xref: http://www.snomedbrowser.com/Codes/Details/315673007 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] @@ -186826,6 +187770,7 @@ synonym: "external part of filum terminale" EXACT [FMA:256526] xref: FMA:256526 xref: http://www.snomedbrowser.com/Codes/Details/315573001 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0005443 {source="FMA"} ! filum terminale [Term] @@ -186856,6 +187801,7 @@ xref: http://palaeos.com/vertebrates/bones/gill_arches/images/ReptileHyoids.gif xref: http://www.snomedbrowser.com/Codes/Details/410035009 xref: MA:0003037 is_a: UBERON:0000075 ! subdivision of skeletal system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton [Term] @@ -186866,6 +187812,7 @@ synonym: "hyoid bone zone" EXACT [FMA:59494] xref: FMA:59494 xref: http://www.snomedbrowser.com/Codes/Details/119534005 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: part_of UBERON:0001685 ! hyoid bone relationship: part_of UBERON:0001685 ! hyoid bone @@ -186877,6 +187824,7 @@ def: "Any anatomical space that is part of a vertebral column." [OBOL:automatic] synonym: "vertebral column opening" EXACT [AAO:0000700] synonym: "vertebral conduit" EXACT [] xref: AAO:0000700 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0001130 ! vertebral column @@ -186909,6 +187857,7 @@ synonym: "transverse pericardial" RELATED [http://en.wikipedia.org/wiki/Pericard synonym: "transverse pericardial sinus" RELATED [http://en.wikipedia.org/wiki/Pericardial_sinus] xref: http://www.snomedbrowser.com/Codes/Details/314273005 xref: Pericardial:sinus +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001074 {source="FMA-abduced"} ! pericardial cavity relationship: part_of UBERON:0010277 {source="MA-abduced"} ! mesocardium @@ -186934,6 +187883,7 @@ xref: FMA:59365 xref: http://www.snomedbrowser.com/Codes/Details/263344003 xref: Lacrimal:punctum is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] @@ -186959,6 +187909,7 @@ def: "Portion of neural tube that gives rise to the midbrain." [ZFA:0007039] xref: TAO:0007039 xref: ZFA:0007039 is_a: UBERON:0000479 {source="ZFA"} ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003080 {source="ZFA"} ! anterior neural tube @@ -186971,7 +187922,6 @@ synonym: "seventh cranial nerve motor root" EXACT [FMA:53419] xref: DHBA:12863 xref: FMA:53419 xref: http://www.snomedbrowser.com/Codes/Details/280191009 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004674 {source="FMA"} ! facial nerve root relationship: develops_from UBERON:0005239 {source="Wikipedia"} ! basal plate metencephalon @@ -187014,6 +187964,7 @@ id: UBERON:0010291 name: layer of sclera xref: Histology is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001773 {source="cjm"} ! sclera [Term] @@ -187179,6 +188130,7 @@ xref: FMA:59023 xref: Gross_anatomy xref: http://www.snomedbrowser.com/Codes/Details/29445007 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000064 ! organ part intersection_of: subdivision_of UBERON:0001811 ! conjunctiva relationship: part_of UBERON:0001811 ! conjunctiva @@ -187633,7 +188585,6 @@ name: otic capsule pre-cartilage condensation def: "An otic capsule endochondral element that is composed primarily of a pre-cartilage condensation." [OBOL:automatic] synonym: "otic capsule anlage" EXACT [] xref: EHDAA2:0000833 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004637 ! otic capsule intersection_of: UBERON:0004637 ! otic capsule intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -187647,7 +188598,7 @@ synonym: "future Reichert's cartilage" EXACT [] synonym: "hyoid cartilage pre-cartilage condensation" EXACT [EMAPA:17351] xref: EMAPA:17351 is_a: UBERON:0005866 ! pre-cartilage condensation -is_a: UBERON:0007213 ! mesenchyme derived from head neural crest +is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0010254 {source="https://doi.org/10.1111/j.1469-7580.2005.00441.x", source="EHDAA2"} ! 2nd arch mesenchyme from neural crest [Term] @@ -187699,6 +188650,7 @@ synonym: "vertebra arch" NARROW [MA:0001453] synonym: "vertebral arch" NARROW [FMA:11946] xref: EMAPA:36614 xref: FMA:11946 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0002412 {source="FMA"} ! vertebra @@ -187837,6 +188789,7 @@ xref: FMA:70887 xref: http://www.snomedbrowser.com/Codes/Details/149885003 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001811 ! conjunctiva relationship: part_of UBERON:0001811 ! conjunctiva @@ -187849,6 +188802,7 @@ def: "The smallest anatomical unit of the lung, measuring 0.50 to 2.00 cm in dia synonym: "lobulus pulmonis" EXACT LATIN [FMA:75739, FMA:TA] xref: FMA:75739 xref: NCIT:C33428 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0009911 ! lobule intersection_of: UBERON:0009911 ! lobule intersection_of: part_of UBERON:0002048 ! lung @@ -187904,6 +188858,7 @@ xref: FMA:57455 xref: http://en.wikipedia.org/wiki/Uncinate_process_of_ethmoid_bone xref: http://www.snomedbrowser.com/Codes/Details/306373001 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection disjoint_from: UBERON:0010373 ! uncinate process of pancreas relationship: part_of UBERON:0001679 ! ethmoid bone @@ -187976,6 +188931,7 @@ id: UBERON:0010378 name: mesenchyme from splanchnopleure def: "Mesenchyme that develops_from a splanchnopleure." [OBOL:automatic] xref: EHDAA2:0001122 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme @@ -188000,6 +188956,7 @@ xref: http://en.wikipedia.org/wiki/Superior_tarsal_muscle xref: http://www.snomedbrowser.com/Codes/Details/244775007 is_a: CARO:0000003 is_a: UBERON:0003386 ! smooth muscle of eye +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004773 ! superior eyelid tarsus relationship: continuous_with UBERON:0001604 {source="FMA"} ! levator palpebrae superioris @@ -188027,6 +188984,7 @@ name: lumen of laryngopharynx def: "An anatomical space that is enclosed by a hypopharynx." [OBOL:automatic] synonym: "laryngopharynx lumen" EXACT [FMA:55096] xref: FMA:55096 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001051 ! hypopharynx @@ -188098,6 +189056,7 @@ xref: FMA:54687 xref: http://www.snomedbrowser.com/Codes/Details/415639001 xref: MA:0001471 xref: Pterygoid:bone +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! facial bone is_a: UBERON:0011164 {source="MA"} ! neurocranium bone is_a: UBERON:0012071 ! palate bone @@ -188113,6 +189072,7 @@ def: "An organ cavity that is part of a urethra." [OBOL:automatic] synonym: "urethral lumen" EXACT [FMA:19709] xref: FMA:19709 xref: http://www.snomedbrowser.com/Codes/Details/279432008 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000057 ! urethra @@ -188283,6 +189243,7 @@ synonym: "suprabasal layer" BROAD [MP:0001233] synonym: "suprabasal layer of epidermis" EXACT [] xref: EMAPA:35315 xref: MA:0000808 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer intersection_of: UBERON:0013754 ! integumentary system layer intersection_of: part_of UBERON:0001003 ! skin epidermis @@ -188313,6 +189274,8 @@ xref: EMAPA:35489 xref: MA:0000965 xref: Subependymal:zone is_a: UBERON:0000119 {source="cjm"} ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: contributes_to_morphology_of UBERON:0000955 ! brain relationship: part_of UBERON:0002285 {source="MA"} ! telencephalic ventricle relationship: part_of UBERON:0004922 {source="Wikipedia"} ! postnatal subventricular zone @@ -188348,6 +189311,7 @@ xref: MA:0002010 xref: NCIT:C32076 xref: UMLS:C0226116 {source="ncithesaurus:Angular_Artery"} is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001612 ! facial artery relationship: part_of UBERON:0001612 ! facial artery @@ -188362,6 +189326,7 @@ synonym: "ocular surface" EXACT [] xref: EMAPA:35336 xref: MA:0002486 is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000019 ! camera-type eye relationship: superficial_to UBERON:0022288 ! surface of eyeball @@ -188387,6 +189352,7 @@ subset: pheno_slim synonym: "retroperitoneal fat depot" EXACT [] xref: MA:0002549 is_a: UBERON:0003427 ! abdominal fat pad +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0002358 ! peritoneum relationship: located_in UBERON:0003693 ! retroperitoneal space @@ -188401,6 +189367,7 @@ synonym: "periepididymal fat pad" EXACT [MP:0009288] xref: EMAPA:35316 xref: MA:0002550 is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0001301 ! epididymis @@ -188457,6 +189424,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2703 xref: MA:0002712 xref: MBA:329 xref: NLX:81 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: capable_of_part_of GO:0050975 ! sensory perception of touch relationship: contributes_to_morphology_of UBERON:0008933 ! primary somatosensory cortex @@ -188569,6 +189537,7 @@ synonym: "spleen mantle zone" RELATED [CL:tm, MP:0002360] synonym: "splenic B cell corona" EXACT [MP:0002360] synonym: "splenic corona" BROAD [CL:tm] xref: EMAPA:37962 {source="MA:th"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010755 ! secondary follicle corona intersection_of: UBERON:0010755 ! secondary follicle corona intersection_of: part_of UBERON:0002106 ! spleen @@ -188646,6 +189615,7 @@ synonym: "cleft palate" RELATED [] synonym: "oropharyngeal naris" EXACT [] synonym: "palatal choana" EXACT [] synonym: "palatal cleft" RELATED [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010425 ! internal naris intersection_of: UBERON:0010425 ! internal naris intersection_of: connects UBERON:0001707 ! nasal cavity @@ -188826,7 +189796,9 @@ id: UBERON:0010507 name: layer of dura mater def: "The intracranial dura mater, consisting of two layers: the outer periosteal layer which normally always adheres to the periosteum of the bones of the cranial vault; and the inner meningeal layer which in most places is fused with the outer. The two layers separate to accommodate meningeal vessels and large venous (dural) sinuses. The meningeal layer is also involved in the formation of the various dural folds, such as the falx cerebri and tentorium cerebelli and is comparable to and continuous with the dural mater of the spinal cord. The cranial epidural space is then a potential space between the bone and the combined periosteum/periosteal layer of the dura mater realised only pathologically and is neither continuous with or comparable to the vertebral epidural space." [http://www.mondofacto.com/facts/dictionary?periosteal+layer+of+dura+mater] xref: FMA:231545 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002363 {source="FMA"} ! dura mater [Term] @@ -188939,6 +189911,7 @@ name: pelvic fin clasper def: "The rod-like extension of the medial portion of the pelvic fin in male Elasmobranchii and Holocephali. Claspers are used as intromittent organs (not in clasping), the grooves on their facing surfaces together forming a tube for the transmission of sperm when the claspers are held together. The anterior proximal opening is called the apopyle, the posterior distal opening the rhipidion." [http://fishbase.org/Glossary/Glossary.php?q=clasper] synonym: "clasper" RELATED [] synonym: "myxopterygium" EXACT [http://fishbase.org/Glossary/Glossary.php?q=clasper] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010516 ! clasper intersection_of: UBERON:0010516 ! clasper intersection_of: part_of UBERON:0000152 ! pelvic fin @@ -189088,7 +190061,6 @@ synonym: "developing nephron" BROAD [] synonym: "future nephron" EXACT [] synonym: "presumptive nephron" EXACT [] synonym: "primitive nephron" BROAD [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 {source="EHDAA2-inferred"} ! epithelial tube is_a: UBERON:0004819 ! kidney epithelium is_a: UBERON:0006555 ! excretory tube @@ -189150,6 +190122,7 @@ id: UBERON:0010537 name: mesonephric nephron progenitor def: "Cluster of cells comprising a portion of tissue which gives rise to new mesonephric nephrons. The cluster contains self-renewing stem cells." [ZFA:0005587] xref: ZFA:0005587 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010536 ! nephron progenitor intersection_of: UBERON:0010536 ! nephron progenitor intersection_of: part_of UBERON:0000080 ! mesonephros @@ -189219,6 +190192,7 @@ synonym: "skeleton of digits" RELATED [] xref: FMA:231315 xref: VSAO:0005028 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0012354 ! acropodium region @@ -189254,7 +190228,6 @@ xref: http://en.wikipedia.org/wiki/Metacarpus xref: MESH:A02.835.232.087.535 xref: VSAO:0005026 xref: XAO:0003208 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010546 ! metapodial skeleton is_a: UBERON:0015042 ! manual digit metacarpus endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton @@ -189289,7 +190262,6 @@ xref: MESH:D008684 xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA xref: VSAO:0005027 xref: XAO:0003212 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010546 ! metapodial skeleton is_a: UBERON:0015036 ! pedal digit metatarsal endochondral element intersection_of: UBERON:0010912 ! subdivision of skeleton @@ -189312,6 +190284,7 @@ synonym: "skeletal parts of metapodium" EXACT [https://orcid.org/0000-0002-6601- synonym: "skeleton of metapodium" EXACT [] xref: VSAO:0005025 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0009877 ! metapodium region @@ -190358,7 +191331,6 @@ xref: EMAPA:37863 {source="MA:th"} xref: FMA:7184 xref: http://www.snomedbrowser.com/Codes/Details/416631005 xref: VSAO:0000215 -is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0010707 ! appendage girdle complex intersection_of: UBERON:0010707 ! appendage girdle complex @@ -190403,6 +191375,7 @@ id: UBERON:0010712 name: limb skeleton subdivision def: "Skeletal subdivision that is a segment of the limb skeleton." [VSAO:0005018, VSAO:NI] xref: VSAO:0005018 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: part_of UBERON:0002101 ! limb @@ -190552,6 +191525,7 @@ synonym: "tuberculum laterale (talus)" EXACT [FMA:33655] xref: FMA:33655 xref: http://www.snomedbrowser.com/Codes/Details/87573005 xref: Os:trigonum +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0002387 ! pes @@ -190593,6 +191567,7 @@ xref: EHDAA2:0003449 is_a: UBERON:0005866 {source="EHDAA2"} ! pre-cartilage condensation is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0009891 ! facial mesenchyme +is_a: UBERON:0014387 ! mesenchyme derived from neural crest is_a: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: UBERON:0015059 ! orbitosphenoid endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -190815,6 +191790,7 @@ synonym: "wing of the ilium" EXACT [http://en.wikipedia.org/wiki/Wing_of_ilium] xref: FMA:42826 xref: http://en.wikipedia.org/wiki/Wing_of_ilium xref: http://www.snomedbrowser.com/Codes/Details/182024000 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ property_value: dc-contributor https://github.com/alex-dececchi property_value: dc-contributor https://github.com/cmungall @@ -190830,6 +191806,7 @@ synonym: "ilium body" EXACT [FMA:42825] xref: FMA:42825 xref: http://en.wikipedia.org/wiki/Body_of_ilium xref: http://www.snomedbrowser.com/Codes/Details/292524005 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 {source="FMA"} ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -190988,6 +191965,7 @@ synonym: "spleen FDC network" EXACT [MP:0008473] synonym: "splenic follicular dendritic cell network" EXACT [MP:0008473] xref: EMAPA:37963 {source="MA:th"} is_a: UBERON:0001744 ! lymphoid tissue +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004042 ! spleen secondary B follicle [Term] @@ -191041,6 +192019,7 @@ synonym: "supraglenoid tuberosity" EXACT [FMA:23263] synonym: "tuberculum supraglenoidale" RELATED LATIN [http://en.wikipedia.org/wiki/Supraglenoid_tubercle] xref: FMA:23263 xref: Supraglenoid:tubercle +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006633 ! coracoid process of scapula @@ -191221,6 +192200,7 @@ synonym: "humeral capitulum" EXACT [FMA:23373] xref: FMA:23373 xref: http://en.wikipedia.org/wiki/Capitulum_of_the_humerus xref: http://www.snomedbrowser.com/Codes/Details/282816008 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0009988 {source="FMA"} ! condyle of humerus @@ -191415,7 +192395,6 @@ relationship: develops_from UBERON:0010882 ! limb bone pre-cartilage condensatio id: UBERON:0010882 name: limb bone pre-cartilage condensation def: "A skeletal element that is part of a limb and composed of pre-cartilage tissue." [http://orcid.org/0000-0002-6601-2165] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0015061 ! limb endochondral element intersection_of: UBERON:0015061 ! limb endochondral element intersection_of: composed_primarily_of UBERON:0005866 ! pre-cartilage condensation @@ -191510,6 +192489,7 @@ name: ectethmoid def: "Either of two lateral parts of the ethmoid bone that form part of the anterior wall of the orbit." [http://www.merriam-webster.com/medical/ectethmoid] synonym: "dorsal nasal capsule" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/21270050] is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001679 ! ethmoid bone [Term] @@ -191735,6 +192715,7 @@ name: paraglossale def: "An arrowhead-shaped bone in the avian hyoid apparatus which forms the base of the tongue." [http://palaeos.com/vertebrates/glossary/glossaryP.html#P] synonym: "paraglossale bone" EXACT [] is_a: UBERON:0001474 ! bone element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: located_in UBERON:0010033 ! posterior part of tongue relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -191745,6 +192726,7 @@ name: opisthotic def: "Posterior ossification of the otic capsule." [AAO:0010835, http://palaeos.com/vertebrates/bones/braincase/opisthotic.html] comment: see TAO:0000474 - intercalar "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." xref: AAO:0010835 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0004637 {source="AAO"} ! otic capsule @@ -191871,6 +192853,7 @@ xref: UMLS:C0224214 {source="ncithesaurus:Cricopharyngeus_Muscle"} is_a: CARO:0000003 is_a: UBERON:0000933 ! pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010938 ! muscle belly relationship: has_muscle_origin UBERON:0002375 ! cricoid cartilage relationship: innervated_by UBERON:0001759 {source="Wikipedia"} ! vagus nerve @@ -191986,6 +192969,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/244805001 is_a: CARO:0000003 is_a: UBERON:0000933 ! pharyngeal muscle is_a: UBERON:0003831 ! respiratory system muscle +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010938 ! muscle belly relationship: has_muscle_origin UBERON:0001738 {source="dbpedia"} ! thyroid cartilage relationship: part_of UBERON:0001570 {source="FMA"} ! inferior pharyngeal constrictor @@ -192034,6 +193018,8 @@ synonym: "masseter, deep" RELATED [FEED:FEED] synonym: "zygomaticomandibularis" EXACT [FEED:FEED] synonym: "zygomaticomandibularis muscle" EXACT [] is_a: UBERON:0001630 ! muscle organ +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001597 ! masseter muscle [Term] @@ -192051,6 +193037,8 @@ synonym: "musculus digastricus" RELATED LATIN [http://en.wikipedia.org/wiki/Diga xref: FMA:46297 xref: http://www.snomedbrowser.com/Codes/Details/360772008 is_a: UBERON:0000933 ! pharyngeal muscle +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010938 {gci_relation="part_of", gci_filler="NCBITaxon:9606", source="FMA"} ! muscle belly is_a: UBERON:0014892 ! skeletal muscle organ intersection_of: UBERON:0014892 ! skeletal muscle organ @@ -192275,6 +193263,7 @@ id: UBERON:0010955 name: trapezius pre-muscle mass xref: EHDAA2:0002079 is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation +is_a: UBERON:0006904 ! head mesenchyme from mesoderm is_a: UBERON:0010258 ! mesenchyme from rhombencephalic neural crest relationship: develops_from UBERON:0010258 {source="EHDAA2"} ! mesenchyme from rhombencephalic neural crest relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -192388,6 +193377,7 @@ relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervica id: UBERON:0010982 name: latissimus dorsi pre-muscle mass xref: EHDAA2:0000933 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -192396,6 +193386,7 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010983 name: levator scapulae pre-muscle mass xref: EHDAA2:0000993 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -192404,6 +193395,7 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010984 name: pectoral pre-muscle mass xref: EHDAA2:0001423 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -192412,6 +193404,7 @@ relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and tho id: UBERON:0010985 name: rhomboid pre-muscle mass xref: EHDAA2:0001636 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -192439,6 +193432,7 @@ relationship: part_of UBERON:0002376 {source="EHDAA2"} ! cranial muscle id: UBERON:0010988 name: teres major pre-muscle mass xref: EHDAA2:0002005 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005865 {source="EHDAA2"} ! pre-muscle condensation relationship: develops_from UBERON:0010963 {source="EHDAA2"} ! trunk and cervical myotome group relationship: part_of UBERON:0008713 {source="EHDAA2"} ! pectoral girdle and thoracic body wall skeletal muscle @@ -192491,6 +193485,7 @@ synonym: "ulnar coronoid process" EXACT [] xref: FMA:23616 xref: http://en.wikipedia.org/wiki/Coronoid_process_of_the_ulna xref: http://www.snomedbrowser.com/Codes/Details/181951002 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 {source="FMA"} ! anatomical projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006822 {source="FMA"} ! proximal epiphysis of ulna @@ -192508,6 +193503,8 @@ synonym: "pars profunda of masseter muscle" EXACT [] xref: FMA:49003 xref: http://www.snomedbrowser.com/Codes/Details/142309002 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: in_deep_part_of UBERON:0001597 ! masseter muscle relationship: part_of UBERON:0001597 ! masseter muscle @@ -192681,6 +193678,7 @@ name: iliac fossa xref: FMA:75316 xref: http://www.snomedbrowser.com/Codes/Details/182341009 xref: NCIT:C103454 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -192869,6 +193867,7 @@ xref: MA:0000248 xref: Perilymphatic:duct xref: ZFA:0005461 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 {source="MA"} ! internal ear relationship: surrounds UBERON:0001845 ! perilymph @@ -192878,6 +193877,7 @@ name: endolymphatic space def: "Endolymph-filled space contained by the membranous labyrinth." [http://medical-dictionary.thefreedictionary.com/endolymphatic+space] xref: FMA:77823 xref: http://www.snomedbrowser.com/Codes/Details/279856000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001849 {source="Wikipedia"} ! membranous labyrinth relationship: part_of UBERON:0002295 ! scala media @@ -192919,7 +193919,7 @@ xref: EFO:0003659 xref: TAO:0001272 xref: VHOG:0000511 xref: ZFA:0001272 -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010912 {source="cjm"} ! subdivision of skeleton property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/mellybelly @@ -193065,6 +194065,7 @@ xref: EMAPA:19010 xref: FMA:25018 xref: http://en.wikipedia.org/wiki/Cruciate_ligament_of_the_dens xref: http://www.snomedbrowser.com/Codes/Details/182362005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005174 ! dorsal region element relationship: part_of UBERON:0000220 {inconsistent_with="Wikipedia", source="FMA"} ! atlanto-occipital joint @@ -193334,6 +194335,7 @@ id: UBERON:0011130 name: temporomandibular joint primordium synonym: "temporo-mandibular joint primordium" EXACT [EMAPA:18714] xref: EMAPA:18714 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0001694 {source="EMAPA"} ! petrous part of temporal bone @@ -193471,6 +194473,8 @@ synonym: "superficial layer of masseter" EXACT [FMA:49000] synonym: "superficial part of masseter" EXACT [FMA:49000] xref: FMA:49000 xref: http://www.snomedbrowser.com/Codes/Details/142208007 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_superficial_part_of UBERON:0001597 ! masseter muscle @@ -193499,6 +194503,7 @@ synonym: "ossicle of axial skeleton" EXACT [OBOL:automatic] synonym: "ossicle of postcranial-axial skeleton" EXACT [OBOL:automatic] synonym: "vertebral ossicle" RELATED [OBOL:automatic] xref: VSAO:0000133 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010911 ! ossicle intersection_of: UBERON:0010911 ! ossicle intersection_of: part_of UBERON:0002090 ! postcranial axial skeleton @@ -193570,6 +194575,7 @@ id: UBERON:0011147 name: Verson's gland def: "A gland found in the larvae of lepidoptera. Each gland is made of three cells: the secretory cell, the reservoir cell and the canal cell." [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0007376 ! outer epithelium @@ -193653,6 +194659,7 @@ xref: AAO:0010371 xref: TAO:0001401 xref: XAO:0003178 xref: ZFA:0001401 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton @@ -193668,6 +194675,7 @@ xref: EFO:0003684 xref: TAO:0001402 xref: XAO:0003179 xref: ZFA:0001402 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0005884 {source="AAO"} ! hyoid arch skeleton @@ -193967,6 +194975,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2753 xref: MA:0000926 xref: MBA:359 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0011177 {source="lexical"} ! posterior division of bed nuclei of stria terminalis relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis @@ -194018,6 +195027,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2754 xref: MA:0000930 xref: MBA:367 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001880 {source="MA"} ! bed nucleus of stria terminalis [Term] @@ -194068,6 +195078,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1522442 xref: http://www.snomedbrowser.com/Codes/Details/279712008 xref: NCIT:C32384 xref: UMLS:C1522442 {source="ncithesaurus:Corpus_Spongiosum"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0008324 ! erectile tissue is_a: UBERON:0009010 ! periurethral tissue @@ -194136,6 +195147,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1512275 xref: http://www.snomedbrowser.com/Codes/Details/181934009 xref: NCIT:C32700 xref: UMLS:C1512275 {source="ncithesaurus:Greater_Tuberosity"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus @@ -194155,6 +195167,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/181935005 xref: Lesser:tubercle xref: NCIT:C32983 xref: UMLS:C0223687 {source="ncithesaurus:Lesser_Tuberosity"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 {source="FMA"} ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004411 {source="FMA"} ! proximal epiphysis of humerus @@ -194190,6 +195203,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/300538005 xref: NCIT:C33025 xref: UMLS:C0221991 {source="ncithesaurus:Lunula"} xref: unula:(anatomy) +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001705 ! nail @@ -194329,6 +195343,7 @@ xref: NCIT:C63862 xref: Prostatic:utricle xref: UMLS:C0227736 {source="ncithesaurus:Prostatic_Utricle"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001335 {source="FMA"} ! prostatic urethra [Term] @@ -194380,6 +195395,7 @@ xref: NCIT:C54210 xref: UMLS:C1711256 {source="ncithesaurus:Urachal_Epithelium"} is_a: UBERON:0003914 {source="EHDAA2"} ! epithelial tube is_a: UBERON:0006555 ! excretory tube +is_a: UBERON:0012275 ! meso-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002068 ! urachus relationship: part_of UBERON:0002068 ! urachus @@ -194389,6 +195405,7 @@ id: UBERON:0011203 name: urachus mesenchyme def: "Mesenchyme that is part of a developing urachus." [OBOL:automatic] xref: EHDAA2:0004726 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007524 {source="EHDAA2"} ! dense mesenchyme tissue intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002068 ! urachus @@ -194412,6 +195429,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/261416006 xref: NCIT:C33448 xref: Recto-vesical:pouch xref: UMLS:C0230301 {source="ncithesaurus:Recto-Vesical_Pouch"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002358 ! peritoneum @@ -194525,6 +195543,7 @@ subset: upper_level synonym: "cell part cluster of neuraxis" EXACT [FMA:83143] synonym: "neuraxis layer" EXACT [FMA:83143] xref: FMA:83143 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: part_of UBERON:0001017 ! central nervous system @@ -194611,6 +195630,7 @@ synonym: "ora serrata retinae" EXACT LATIN [FMA:TA] xref: FMA:58600 xref: http://www.snomedbrowser.com/Codes/Details/280612002 xref: Ora:serrata +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: connects UBERON:0000966 ! retina relationship: connects UBERON:0001775 ! ciliary body @@ -194741,6 +195761,7 @@ xref: http://en.wikipedia.org/wiki/Perpendicular_plate_of_ethmoid_bone xref: http://www.snomedbrowser.com/Codes/Details/369005006 xref: MA:0003126 is_a: UBERON:0005913 {source="cjm"} ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001679 {source="FMA"} ! ethmoid bone [Term] @@ -194753,6 +195774,7 @@ synonym: "infra-orbital canal" BROAD [FMA:59048] synonym: "infraorbital canal" BROAD [http://en.wikipedia.org/wiki/Infraorbital_canal] xref: FMA:59048 xref: Infraorbital:canal +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0004646 ! infraorbital artery @@ -194882,8 +195904,8 @@ id: UBERON:0011255 name: Eimer's organ def: "A sensory organ in which the epidermis is modified to form bulbous papillae. The organs are formed from a stack of epidermal cells, which is innervated by nerve processes from myelinated fibers in the dermis, which form terminal swellings just below the outer keratinized layer of epidermis. They contain a Merkel cell-neurite complex in the epidermis and a lamellated corpuscle in the dermal connective tissue." [http://en.wikipedia.org/wiki/Eimer's_organ] xref: Eimer's:organ -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 {source="Wikipedia"} ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000242 ! Merkel cell relationship: has_part UBERON:0003719 ! Pacinian corpuscle relationship: only_in_taxon NCBITaxon:9373 ! Talpidae @@ -194895,6 +195917,8 @@ name: rhinarium def: "Moist, hairless, crenelated area around nostrils of some mammals." [http://anthro.palomar.edu/primate/glossary.htm, http://en.wikipedia.org/wiki/Rhinarium] xref: http://en.wikipedia.org/wiki/Rhinarium is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0007827 ! external nose relationship: surrounds UBERON:0005928 ! external naris @@ -194903,6 +195927,7 @@ relationship: surrounds UBERON:0005928 ! external naris id: UBERON:0011263 name: femoral gland def: "A gland arranged along a row on the underside of the hindlimb in some lizards[Kardong]." [ISBN:0073040584] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0019319 ! exocrine gland of integumental system relationship: only_in_taxon NCBITaxon:8509 ! Squamata relationship: part_of UBERON:0000376 {source="ISBN:0073040584"} ! hindlimb stylopod @@ -194914,6 +195939,7 @@ id: UBERON:0011264 name: femoral pore def: "Femoral pores are a part of a holocrine secretory gland found on the inside of the thighs of certain lizards and amphisbaenians which releases pheromones to attract mates or mark territory. In certain species only the male has these pores and in other species, both sexes have them, with the males being larger.[1] Femoral pores appear as a series of pits or holes within a row of scales on the ventral portion of the animal's thigh." [http://en.wikipedia.org/wiki/Femoral_pore] xref: Femoral:pore +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0011263 ! femoral gland @@ -194972,6 +195998,7 @@ def: "A secondary tongue located below the primary tongue in prosimian primates synonym: "second tongue" RELATED [http://en.wikipedia.org/wiki/Sublingua] synonym: "under-tongue" RELATED [http://en.wikipedia.org/wiki/Sublingua] xref: http://en.wikipedia.org/wiki/Sublingua +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013765 ! digestive system element relationship: only_in_taxon NCBITaxon:9347 {source="Wikipedia"} ! Eutheria relationship: part_of UBERON:0000165 ! mouth @@ -195217,6 +196244,7 @@ name: rostral organ def: "A putative electroreceptor organ located in the medial rostral cavity in the ethmoid portion of the chondrocranium of Coelacanths. It is surrounded by an insulating layer of adipose tissue and innervated by the superficial ophthalmic nerve." [http://en.wikipedia.org/wiki/Rostral_organ] comment: classification as electric organ is putative xref: Rostral:organ +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0010521 ! electroreceptor organ relationship: innervated_by UBERON:0000348 ! ophthalmic nerve @@ -195262,6 +196290,7 @@ synonym: "uterine submucosa" RELATED [] xref: BTO:0002116 xref: http://www.snomedbrowser.com/Codes/Details/245489008 is_a: UBERON:0000009 ! submucosa +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0003889 ! fallopian tube @@ -195352,6 +196381,8 @@ synonym: "temporalis pars anterior" EXACT [MFMO:0000087] synonym: "temporalis pars superficialis" EXACT [MFMO:0000087] xref: MFMO:0000087 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_superficial_part_of UBERON:0001598 ! temporalis muscle @@ -195373,6 +196404,8 @@ synonym: "temporalis pars posterior" EXACT [MFMO:0000086] synonym: "temporalis pars profunda" EXACT [MFMO:0000086] synonym: "temporalis posterior head" EXACT [MFMO:0000086] xref: MFMO:0000086 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_deep_part_of UBERON:0001597 ! masseter muscle @@ -195386,6 +196419,8 @@ def: "The suprazygomatic part of the temporalis muscle is a separable part of th synonym: "temporalis pars suprazygomatica" EXACT [MFMO:0000088] synonym: "zygomatic temporalis" EXACT [MFMO:0000088] xref: MFMO:0000088 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001598 {source="FEED"} ! temporalis muscle @@ -195396,6 +196431,8 @@ def: "The pars reflexa is a separable part of the superficial masseter muscle th synonym: "masseter, pars reflexa" EXACT [FEED:FEED] synonym: "pars reflexa" BROAD [FEED:FEED] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011140 ! superficial part of masseter muscle [Term] @@ -195409,6 +196446,7 @@ xref: FMA:52827 xref: http://en.wikipedia.org/wiki/Body_of_mandible xref: http://www.snomedbrowser.com/Codes/Details/244684002 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001684 {source="FMA"} ! mandible [Term] @@ -195417,6 +196455,7 @@ name: masseteric fossa def: ".The fossa for the masseter. In some therapsids, the coronoid process of the dentary bears a large external depression which accommodates the masseter -- an important muscle in closing and in grinding motions of the jaw." [http://palaeos.com/vertebrates/glossary/glossaryM.html] synonym: "masseteric cavity" RELATED [] is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001684 {source="FMA"} ! mandible [Term] @@ -195452,6 +196491,8 @@ relationship: attaches_to UBERON:0003999 ! hyoid bone body id: UBERON:0011313 name: posterior subdivision of masseter synonym: "masseter, posterior" EXACT [FEED:FEED] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_posterior_side_of UBERON:0001597 ! masseter muscle @@ -195463,6 +196504,8 @@ relationship: part_of UBERON:0001597 ! masseter muscle id: UBERON:0011314 name: anterior subdivision of masseter synonym: "masseter, anterior" EXACT [FEED:FEED] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: in_anterior_side_of UBERON:0001597 ! masseter muscle @@ -195652,7 +196695,6 @@ xref: BAMS:sln xref: FMA:6239 xref: http://en.wikipedia.org/wiki/Superior_laryngeal_nerve xref: http://www.snomedbrowser.com/Codes/Details/279928006 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011779 ! nerve of head region is_a: UBERON:0035642 ! laryngeal nerve relationship: branching_part_of UBERON:0001759 {source="FMA"} ! vagus nerve @@ -195690,6 +196732,7 @@ name: surface of mandible def: "An anatomical surface that is part of a mandible." [OBOL:automatic] synonym: "mandibular surface" EXACT [FMA:57558] xref: FMA:57558 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0001684 ! mandible @@ -195723,6 +196766,7 @@ synonym: "raphe pharyngis" EXACT [http://en.wikipedia.org/wiki/Pharyngeal_raphe] xref: FMA:55077 xref: http://www.snomedbrowser.com/Codes/Details/179763009 xref: Pharyngeal:raphe +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003570 ! respiratory system connective tissue disjoint_from: UBERON:0011346 ! palatine raphe relationship: part_of UBERON:0001042 ! chordate pharynx @@ -195735,6 +196779,7 @@ synonym: "raphe palati" EXACT [http://en.wikipedia.org/wiki/Palatine_raphe] xref: FMA:75111 xref: Palatine:raphe is_a: UBERON:0003566 ! head connective tissue +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001716 ! secondary palate [Term] @@ -195785,6 +196830,7 @@ synonym: "Reissner's fibre" EXACT [] xref: NLX:151878 xref: Reissner's:fiber is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: composed_primarily_of PR:000015658 ! SCO-spondin relationship: part_of UBERON:0001017 ! central nervous system relationship: present_in_taxon NCBITaxon:7711 {source="ISBN:0471888893"} ! Chordata @@ -195795,8 +196841,8 @@ name: infundibular organ comment: Resembles the subcommisural organ structurally, ultrastructurally and immunochemically[Niewenhuys] Gives rise to Reissner's fiber; however secretions are not identical to those of SCO [PMID:9550137][DOI:10.1007/BF00303086] synonym: "infundibular organ of Boeke" EXACT [] synonym: "ventral infundibular organ" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000065 ! ependymal cell relationship: part_of UBERON:0001017 ! central nervous system relationship: present_in_taxon NCBITaxon:7737 {source="https://doi.org/10.1111/j.1463-6395.1976", stage="larval"} ! Branchiostoma @@ -195809,6 +196855,7 @@ def: "This is a neurosecretory organ rostral to the ampulla caudalis on the vent comment: Shares characteristics with neurohypophysis xref: BTO:0001848 is_a: UBERON:0002368 {source="BTO"} ! endocrine gland +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005174 ! dorsal region element is_a: UBERON:0010133 ! neuroendocrine gland relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord @@ -195817,6 +196864,7 @@ relationship: part_of UBERON:0002240 {source="BTO"} ! spinal cord id: UBERON:0011360 name: ampulla caudalis def: "A ventricle-like space at the end of the central canal." [ISBN:0471888893] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002291 {notes="in caudal end of"} ! central canal of spinal cord @@ -195975,6 +197023,7 @@ id: UBERON:0011374 name: prepuce def: "A retractable double-layered fold of skin and mucous membrane that covers the glans penis or clitoris. Glands may also be present." [http://orcid.org/0000-0002-6601-2165] xref: NCIT:C12323 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone relationship: develops_from UBERON:0035004 ! preputial swelling @@ -196325,6 +197374,7 @@ id: UBERON:0011510 name: cloacal bursa def: "An evagination of the cloaca. In Testudines these are hypothesized to function in different physiological roles, primarily in respiration." [http://www.ncbi.nlm.nih.gov/pubmed/11479904, UBERON:cjm] comment: Taxon notes: in cryptodires, bursae apparently function primarily in buoyancy control and secondarily in ion transport and nesting, but several pleurodires have been shown recently to use them in aquatic respiration.[PMID:11479904] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit relationship: capable_of_part_of GO:0007585 {gci_relation="part_of", gci_filler="NCBITaxon:8459", notes="cloacal bursa"} ! respiratory gaseous exchange by respiratory system relationship: capable_of_part_of GO:0031413 {gci_relation="part_of", gci_filler="NCBITaxon:8464", source="http://www.ncbi.nlm.nih.gov/pubmed/11479904"} ! regulation of buoyancy @@ -196491,6 +197541,7 @@ synonym: "esophagus lumen" EXACT [FMA:9398] xref: EMAPA:18380 xref: FMA:9398 xref: http://www.snomedbrowser.com/Codes/Details/322648002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001043 ! esophagus @@ -196505,6 +197556,7 @@ def: "A tube lumen that is part of a mesonephric duct." [OBOL:automatic] synonym: "cavity of nephric duct" RELATED [] synonym: "nephric duct lumen" EXACT [EHDAA2:0001244] xref: EHDAA2:0001244 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 ! tube lumen intersection_of: UBERON:0005082 ! tube lumen intersection_of: luminal_space_of UBERON:0003074 ! mesonephric duct @@ -196522,6 +197574,7 @@ synonym: "ulnar styloid process" EXACT [FMA:23628] xref: FMA:23628 xref: http://en.wikipedia.org/wiki/Ulnar_styloid_process xref: http://www.snomedbrowser.com/Codes/Details/181952009 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 {source="FMA"} ! anatomical projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004408 {source="FMA"} ! distal epiphysis of ulna @@ -196559,6 +197612,7 @@ xref: NCIT:C82953 xref: Supraorbital:ridge xref: UMLS:C2826587 {source="ncithesaurus:Orbital_Ridge"} is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:2000691 ! supraorbital bone relationship: has_quality PATO:0001598 {gci_relation="part_of", gci_filler="NCBITaxon:63221"} ! protruding relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -196572,8 +197626,9 @@ id: UBERON:0011577 name: flexural organ def: "A portion of tissue that is the most anterior portion of the notochord. The flexural organ secretes Reissner's fiber-related proteins, including F-spondin." [https://sourceforge.net/tracker/?group_id=76834&atid=994726, ZFA:0007071] xref: ZFA:0007071 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_potential_to_develop_into UBERON:0010134 {notes="unvetted"} ! secretory circumventricular organ relationship: part_of UBERON:0002328 {source="ZFA"} ! notochord relationship: present_in_taxon NCBITaxon:7711 ! Chordata @@ -196595,6 +197650,7 @@ id: UBERON:0011580 name: platypus crural gland def: "A kidney-shaped alveolar glands located in the upper thigh connected by a thin-walled duct to a calcaneus spur, or calcar, on each hind limb." [http://en.wikipedia.org/wiki/Platypus_venom#Spur_and_crural_gland] xref: Spur_and_crural_gland +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011579 ! venom gland relationship: only_in_taxon NCBITaxon:9257 ! Ornithorhynchus relationship: part_of UBERON:0011581 ! platypus calcaneus spur @@ -196643,6 +197699,7 @@ synonym: "stylopodium" RELATED [] synonym: "stylopodium skeleton" EXACT [] xref: VSAO:0005007 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0002472 ! stylopod @@ -196664,6 +197721,7 @@ synonym: "zeugopod skeleton" EXACT [https://orcid.org/0000-0002-6601-2165] synonym: "zygopodium" RELATED [VSAO:0005010] xref: VSAO:0005010 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0002471 ! zeugopod @@ -196751,7 +197809,6 @@ id: UBERON:0011592 name: future upper lip synonym: "upper jaw future lip" EXACT [EHDAA2:0002120] xref: EHDAA2:0002120 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003235 ! epithelium of upper jaw relationship: develops_from UBERON:0004068 {notes="fusion"} ! medial nasal prominence @@ -196853,6 +197910,7 @@ synonym: "processus lenticularis incudis" EXACT LATIN [FMA:52775, FMA:TA] xref: FMA:52775 xref: http://palaeos.com/vertebrates/bones/ear/images/Incus3.gif xref: http://www.snomedbrowser.com/Codes/Details/368928003 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:0005689 ! 2nd arch mesenchyme @@ -196921,6 +197979,7 @@ synonym: "avian keel" RELATED [] synonym: "carina" BROAD [] synonym: "keel" BROAD [] xref: Keel:(bird) +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: capable_of_part_of GO:0060361 ! flight relationship: only_in_taxon NCBITaxon:8782 {source="Wikipedia"} ! Aves @@ -196951,7 +198010,6 @@ xref: TAO:0000672 xref: VHOG:0000688 xref: ZFA:0000672 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011608 ! hyomandibular element intersection_of: UBERON:0011608 ! hyomandibular element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -196985,6 +198043,7 @@ synonym: "hyomandibula - stapes" EXACT [VHOG:0000688] synonym: "hyomandibula element" EXACT [] xref: TAO:0000672 xref: VHOG:0000688 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton @@ -196992,6 +198051,7 @@ relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton id: UBERON:0011609 name: ceratohyal element synonym: "keratohyal element" RELATED [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton @@ -197027,7 +198087,6 @@ xref: http://www.snomedbrowser.com/Codes/Details/370641002 xref: TAO:0000578 xref: ZFA:0000578 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011609 ! ceratohyal element disjoint_from: UBERON:2000627 {source="lexical"} ! posterior ceratohyal relationship: develops_from UBERON:0011610 {source="TAO"} ! ceratohyal cartilage @@ -197043,6 +198102,7 @@ is_a: UBERON:0011613 ! hypohyal element id: UBERON:0011613 name: hypohyal element def: "The hypohyal is a ventral element of the hyoid arch which links the ceratohyal and the basihyal." [http://palaeos.com/vertebrates/bones/gill_arches/hypohyal.html] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010522 ! replacement element relationship: part_of UBERON:0011153 {source="TAO-abduced"} ! ventral hyoid arch skeleton @@ -197051,6 +198111,7 @@ id: UBERON:0011614 name: basihyal element def: "Skeletal element that is median and is the anterior-most element of the ventral hyoid arch." [TAO:0001891] xref: TAO:0001891 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 {source="TAO"} ! ventral hyoid arch skeleton @@ -197077,7 +198138,6 @@ xref: TAO:0000316 xref: VSAO_RETIRED:0000007 xref: ZFA:0000316 is_a: UBERON:0002513 {source="TAO"} ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011614 ! basihyal element intersection_of: UBERON:0011614 ! basihyal element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -197090,6 +198150,7 @@ name: stylohyoid bone def: "This is the paired bone that makes up the segment of the mammalian hyoid apparatus connecting the epihyoids with the skull via the tympanohyoid cartilages on each side. Ventrally, it defines the medial and lateral compartments of the guttural pouch in the horse." [MURDOCH:1758] xref: http://www.snomedbrowser.com/Codes/Details/370715004 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -197100,6 +198161,7 @@ synonym: "lingual process of basihyoid" EXACT [] synonym: "lingual process of basihyoid bone" EXACT [] synonym: "lingual process of hyoid" RELATED [] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011618 ! basihyal bone [Term] @@ -197117,6 +198179,7 @@ name: thyrohyoid bone def: "Is a laterally bowed, sagittally compressed, slender element that extends from dorsocaudally from the lateral parts of the basihyoid. It connects the basiohyoid with the rostral corner of the thyroid cartlilage of the larynx." [MURDOCH:1951] xref: http://www.snomedbrowser.com/Codes/Details/370708007 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: connects UBERON:0011618 ! basihyal bone relationship: connects UBERON:0011623 ! horn of thyroid cartilage relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -197128,7 +198191,9 @@ synonym: "cornu of thyroid cartilage" EXACT [FMA:55300] synonym: "thyroid cartilage horn" EXACT [FMA:55300] xref: FMA:55300 xref: http://www.snomedbrowser.com/Codes/Details/279518009 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004765 ! skeletal element +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001738 ! thyroid cartilage [Term] @@ -197174,7 +198239,9 @@ synonym: "pars orbitalis (os frontale)" EXACT [FMA:52849] synonym: "pars orbitalis ossis frontalis" EXACT LATIN [http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone] xref: FMA:52849 xref: http://en.wikipedia.org/wiki/Orbital_part_of_frontal_bone +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0002517 {source="FMA-abduced-lr"} ! basicranium relationship: part_of UBERON:0000209 ! tetrapod frontal bone @@ -197316,6 +198383,7 @@ synonym: "plica anterior faucium" EXACT LATIN [FMA:TA] xref: FMA:55024 xref: http://www.snomedbrowser.com/Codes/Details/276958001 xref: Palatoglossal:arch +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 {source="FMA"} ! anatomical cluster relationship: adjacent_to UBERON:0000165 ! mouth relationship: adjacent_to UBERON:0001042 ! chordate pharynx @@ -197483,6 +198551,7 @@ def: "Paired processes that arise near the midpoint of the neural arch lamina, f synonym: "diapophysis" BROAD [AAO:0000706] synonym: "transverse process" BROAD [AAO:0000706] xref: AAO:0000706 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 {source="AAO"} ! anatomical projection is_a: UBERON:4100000 ! skeletal element projection relationship: connected_to UBERON:0011652 ! dorsal head of rib @@ -197652,6 +198721,8 @@ name: perichordal ring def: "Enlarged section of perichordal tube that is arranged serially but out of phase with segmental musculature." [ISBN:0073040584] xref: AAO:0000738 is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007862 {source="AAO"} ! perichordal tissue [Term] @@ -197894,6 +198965,8 @@ synonym: "valve leaflet" RELATED [MA:0003179] xref: EMAPA:35903 xref: MA:0003179 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0000946 ! cardial valve [Term] @@ -197933,6 +199006,7 @@ xref: EMAPA:35377 xref: Labioscrotal:swelling xref: VHOG:0000976 is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0005876 ! undifferentiated genital tubercle @@ -197947,7 +199021,6 @@ xref: EHDAA2:0000501 xref: EHDAA:9363 xref: EMAPA:18329 xref: EMAPA:30423 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011754 ! genital swelling intersection_of: UBERON:0011754 ! genital swelling intersection_of: part_of UBERON:0000474 ! female reproductive system @@ -197963,7 +199036,6 @@ synonym: "scrotal bulge" EXACT [] synonym: "scrotal primordium" EXACT [] xref: EHDAA2:0001049 xref: EMAPA:30509 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011754 ! genital swelling intersection_of: UBERON:0011754 ! genital swelling intersection_of: part_of UBERON:0003135 ! male reproductive organ @@ -198081,6 +199153,7 @@ id: UBERON:0011772 name: lower jaw opening def: "An anatomical space that is part of a bone of lower jaw." [OBOL:automatic] xref: AAO:0000273 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0004768 ! bone of lower jaw @@ -198092,6 +199165,7 @@ id: UBERON:0011773 name: upper jaw opening def: "An anatomical space that is part of a bone of upper jaw." [OBOL:automatic] xref: AAO:0000621 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0011597 ! bone of upper jaw @@ -198113,6 +199187,7 @@ xref: FMA:61243 xref: http://www.snomedbrowser.com/Codes/Details/279811007 xref: NCIT:C33845 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000025 ! tube intersection_of: connects UBERON:0001853 ! utricle of membranous labyrinth intersection_of: connects UBERON:0001854 ! saccule of membranous labyrinth @@ -198227,6 +199302,7 @@ synonym: "shaft of feather" EXACT [] synonym: "stem of feather" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/66810005 is_a: UBERON:0000025 ! tube +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000022 ! feather [Term] @@ -198234,6 +199310,7 @@ id: UBERON:0011785 name: ramus of feather barb synonym: "barb ramus" RELATED [] synonym: "main shaft of feather barb" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0008294 ! feather barb @@ -198242,6 +199319,7 @@ id: UBERON:0011786 name: ramus of feather barbule synonym: "barb ramus" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "main shaft of feather barbule" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: part_of UBERON:0008295 ! feather barbule @@ -198341,6 +199419,7 @@ relationship: connected_to UBERON:0000976 ! humerus id: UBERON:0011799 name: cavity of feather shaft def: "An anatomical cavity that is part of a feather shaft." [OBOL:automatic] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0011784 ! feather shaft @@ -198351,8 +199430,8 @@ relationship: part_of UBERON:0011784 ! feather shaft id: UBERON:0011800 name: dermal pulp of feather shaft def: "A tissue that is part of a cavity of feather shaft." [OBOL:automatic] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0011784 ! feather shaft relationship: develops_from UBERON:0011803 ! feather bud, dermal component @@ -198363,6 +199442,7 @@ relationship: part_of UBERON:0011784 ! feather shaft id: UBERON:0011801 name: dermal condensation of feather follicle def: "A suprabasal cell population which together with the feather follicle placode develops into the feather follicle." [http://people.eku.edu/ritchisong/feather_evolution.htm] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011585 ! cell condensation intersection_of: UBERON:0011585 ! cell condensation intersection_of: adjacent_to UBERON:0011783 ! feather follicle placode @@ -198388,8 +199468,8 @@ synonym: "dermal core of feather papilla" EXACT [] synonym: "dermal papilla" BROAD [http://people.eku.edu/ritchisong/feather_evolution.htm] synonym: "dermal papilla of feather bud" EXACT [] synonym: "dermal papilla of feather papilla" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0011802 ! feather bud relationship: develops_from UBERON:0011801 ! dermal condensation of feather follicle @@ -198403,6 +199483,7 @@ synonym: "feather bud epithelium" EXACT [] synonym: "feather germ" RELATED [http://people.eku.edu/ritchisong/feather_evolution.htm] is_a: UBERON:0005153 ! epithelial bud is_a: UBERON:0010314 ! structure with developmental contribution from neural crest +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0005153 ! epithelial bud intersection_of: part_of UBERON:0011802 ! feather bud relationship: develops_from UBERON:0011783 ! feather follicle placode @@ -198411,6 +199492,7 @@ relationship: part_of UBERON:0011802 ! feather bud [Term] id: UBERON:0011805 name: cavity of feather follicle +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0011782 ! feather follicle @@ -198422,6 +199504,7 @@ id: UBERON:0011806 name: dermis of feather follicle def: "A tissue that is part of a dermis and is part of a feather follicle." [OBOL:automatic] is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0002067 ! dermis @@ -198435,6 +199518,7 @@ id: UBERON:0011807 name: epidermis of feather follicle def: "A tissue that is part of a epidermis and is part of a feather follicle." [OBOL:automatic] is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0001003 ! skin epidermis @@ -198522,6 +199606,7 @@ synonym: "AVC lumen" EXACT [] synonym: "cavity of atrioventricular canal" EXACT [] synonym: "lumen of AVC" EXACT [] xref: EHDAA2:0000152 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005082 {source="EHDAA2"} ! tube lumen intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0002087 ! atrioventricular canal @@ -198539,6 +199624,7 @@ synonym: "AV region" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] synonym: "AV segment" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/21234997] xref: EHDAA2:0004149 xref: FMA:85125 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0002081 ! cardiac atrium @@ -198648,6 +199734,7 @@ synonym: "Montgomery tubercle" EXACT [] synonym: "Montgomery's tubercle" EXACT [] synonym: "tubercle of Montgomery" EXACT [] xref: FMA:58091 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005813 {source="FMA"} ! tubercle relationship: part_of UBERON:0002030 ! nipple @@ -198657,6 +199744,7 @@ name: duct of lesser vestibular gland def: "A duct that is part of a minor vestibular gland." [OBOL:automatic] synonym: "lesser vestibular gland duct" EXACT [FMA:20094] xref: FMA:20094 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010146 ! paraurethral duct is_a: UBERON:0011831 ! duct of vestibular gland intersection_of: UBERON:0000058 ! duct @@ -198692,6 +199780,7 @@ synonym: "sebaceous gland duct" EXACT [FMA:70947] xref: FMA:70947 xref: NCIT:C33520 is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001821 ! sebaceous gland relationship: part_of UBERON:0001821 ! sebaceous gland @@ -198702,6 +199791,7 @@ name: acinus of sebaceous gland def: "An acinus that is part of a sebaceous gland." [OBOL:automatic] synonym: "sebaceous gland acinus" EXACT [FMA:59657] xref: FMA:59657 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001821 ! sebaceous gland @@ -198728,6 +199818,7 @@ name: acinus of salivary gland def: "An acinus that is part of a salivary gland." [OBOL:automatic] synonym: "salivary gland acinus" EXACT [FMA:59870] xref: FMA:59870 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001044 ! saliva-secreting gland @@ -198751,6 +199842,7 @@ name: acinus of lactiferous gland def: "An acinus that is part of a mammary gland." [OBOL:automatic] synonym: "lactiferous gland acinus" EXACT [FMA:74438] xref: FMA:74438 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001911 ! mammary gland @@ -198763,6 +199855,7 @@ name: acinus of lacrimal gland def: "An acinus that is part of a lacrimal gland." [OBOL:automatic] synonym: "lacrimal gland acinus" EXACT [FMA:85250] xref: FMA:85250 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0001817 ! lacrimal gland @@ -198796,6 +199889,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/264484004 xref: NCIT:C95443 xref: UMLS:C0149591 {source="ncithesaurus:Internal_Auditory_Canal_of_Ear"} is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: conduit_for UBERON:0001647 ! facial nerve relationship: conduit_for UBERON:0001648 ! vestibulocochlear nerve relationship: contributes_to_morphology_of UBERON:0001846 ! internal ear @@ -198818,6 +199912,7 @@ id: UBERON:0011861 name: aorta collagen fibril def: "The connective tissue bundles in the extracellular matrix of aorta tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011640] subset: pheno_slim +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: part_of UBERON:0004664 ! aorta tunica adventitia @@ -198829,6 +199924,7 @@ id: UBERON:0011862 name: pulmonary collagen fibril def: "The connective tissue bundles in the extracellular matrix of pulmonary tissue that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011641] subset: pheno_slim +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: part_of UBERON:0002048 ! lung @@ -198861,6 +199957,7 @@ id: UBERON:0011865 name: corneal stroma collagen fibril def: "The connective tissue bundles in the extracellular matrix of corneal stroma that are composed of collagen, and play a role in tissue strength and elasticity." [MP:0011650] subset: pheno_slim +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011860 ! collection of collagen fibrils intersection_of: UBERON:0011860 ! collection of collagen fibrils intersection_of: part_of UBERON:0001777 ! substantia propria of cornea @@ -198989,6 +200086,7 @@ synonym: "corpus linguae" EXACT LATIN [http://www.drugs.com/dict/body-of-tongue. synonym: "tongue body" EXACT [FMA:54641] xref: FMA:54641 xref: http://www.snomedbrowser.com/Codes/Details/362090005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 {source="FMA"} ! tongue @@ -199001,6 +200099,7 @@ synonym: "tongue margin" EXACT [FMA:54650] xref: FMA:54650 xref: http://www.snomedbrowser.com/Codes/Details/368572007 xref: http://www.snomedbrowser.com/Codes/Details/368594004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line intersection_of: connects UBERON:0007371 ! superior surface of tongue @@ -199071,6 +200170,7 @@ name: endoneurial fluid def: "Fluid of the ganglia and peripheral nerves that lie outside the brain and spinal cord." [MGI:llw2, MP:0003633] subset: pheno_slim xref: EMAPA:37850 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007794 {source="FMA"} ! secretion of serous gland intersection_of: UBERON:0000463 ! organism substance intersection_of: located_in UBERON:0000123 ! endoneurium @@ -199083,6 +200183,7 @@ name: lumen of vagina def: "An organ cavity that is part of a vagina." [OBOL:automatic] synonym: "vaginal lumen" EXACT [FMA:19982] xref: FMA:19982 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: part_of UBERON:0000996 ! vagina @@ -199099,6 +200200,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0504097 xref: http://www.snomedbrowser.com/Codes/Details/91739007 xref: NCIT:C32517 xref: UMLS:C0504097 {source="ncithesaurus:Endomysium"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006804 ! reticular tissue intersection_of: UBERON:0006804 ! reticular tissue intersection_of: surrounds CL:0000187 ! muscle cell @@ -199152,6 +200254,7 @@ xref: http://en.wikipedia.org/wiki/Epimysium xref: http://linkedlifedata.com/resource/umls/id/C0504096 xref: NCIT:C32527 xref: UMLS:C0504096 {source="ncithesaurus:Epimysium"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: bounding_layer_of UBERON:0014892 ! skeletal muscle organ relationship: continuous_with UBERON:0000043 ! tendon @@ -199168,6 +200271,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0224087 xref: http://www.snomedbrowser.com/Codes/Details/63406008 xref: NCIT:C33299 xref: UMLS:C0224087 {source="ncithesaurus:Perimysium"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue relationship: part_of UBERON:0001134 {source="FMA"} ! skeletal muscle tissue @@ -199177,6 +200281,8 @@ name: hair matrix comment: The hair matrix surrounds the top and sides of the dermal papilla. The hair matrix cells give rise to 6 different types of cells that make up the different layers of the hair shaft and the inner root sheath. xref: FMA:70945 is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001037 {source="FMA"} ! strand of hair [Term] @@ -199196,6 +200302,7 @@ def: "A rock held inside a gastrointestinal tract." [http://en.wikipedia.org/wik synonym: "gizzard stone" RELATED [http://en.wikipedia.org/wiki/Gastrolith] synonym: "stomach stone" RELATED [http://en.wikipedia.org/wiki/Gastrolith] xref: http://en.wikipedia.org/wiki/Gastrolith +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001555 ! digestive tract @@ -199242,6 +200349,7 @@ synonym: "medial head of gastrocnemius muscle" EXACT [] xref: EMAPA:36250 xref: FMA:45956 xref: http://www.snomedbrowser.com/Codes/Details/213689008 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 ! muscle head disjoint_from: UBERON:0011908 {source="lexical"} ! gastrocnemius lateralis relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius @@ -199257,6 +200365,7 @@ synonym: "lateral head of gastrocnemius muscle" EXACT [] xref: EMAPA:36249 xref: FMA:45959 xref: http://www.snomedbrowser.com/Codes/Details/213588009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011906 ! muscle head relationship: part_of UBERON:0001388 {source="FMA"} ! gastrocnemius @@ -199311,6 +200420,7 @@ synonym: "Schwalbe's line" EXACT [FMA:58422] synonym: "Schwalbe's ring" EXACT [MP:0006250] xref: EMAPA:37895 {source="MA:th"} xref: FMA:58422 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: contributes_to_morphology_of UBERON:0005969 ! eye trabecular meshwork relationship: part_of UBERON:0000964 ! cornea @@ -199352,6 +200462,7 @@ subset: pheno_slim synonym: "basement membrane of cochlear labyrinth" EXACT [] synonym: "cochlea basement membrane" EXACT [] xref: EMAPA:37830 {source="MA:th"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005769 ! basement membrane of epithelium intersection_of: UBERON:0005769 ! basement membrane of epithelium intersection_of: part_of UBERON:0002499 ! cochlear labyrinth @@ -199574,6 +200685,8 @@ def: "An arrector muscle of hair that is part of a vibrissa hair." [OBOL:automat synonym: "arrector pilorum muscle of vibrissa" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:26771 is_a: UBERON:0002033 ! arrector muscle of hair +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0002033 ! arrector muscle of hair intersection_of: part_of UBERON:0006378 ! strand of vibrissa hair relationship: part_of UBERON:0006378 ! strand of vibrissa hair @@ -199626,6 +200739,7 @@ def: "A luminal layer of epithelium that is part of a ureter." [OBOL:automatic] subset: pheno_slim xref: EMAPA:37779 {source="MA:th"} xref: MA:0002656 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0000056 ! ureter @@ -199637,6 +200751,7 @@ id: UBERON:0011948 name: ureter subluminal urothelium xref: EMAPA:37780 {source="MA:th"} xref: MA:0002657 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011946 ! subluminal layer of epithelium relationship: part_of UBERON:0001254 ! urothelium of ureter @@ -199646,6 +200761,7 @@ name: endometrium luminal epithelium def: "A luminal layer of epithelium that is part of a endometrium epithelium." [OBOL:automatic] xref: EMAPA:35309 xref: MA:0002733 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0004811 ! endometrium epithelium @@ -199658,6 +200774,7 @@ def: "The inner cell layer of the mammary epithelium bilayer that lines the lumi synonym: "lumina layer of epithelium of lactiferous gland" EXACT [FMA:74458] xref: EMAPA:37902 {source="MA:th"} xref: FMA:74458 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0001911 ! mammary gland @@ -199670,6 +200787,7 @@ name: prostate luminal epithelium def: "A luminal layer of epithelium that is part of a prostate gland." [OBOL:automatic] synonym: "subdivision of luminal layer of epithelium of prostatic gland" EXACT [FMA:74262] xref: FMA:74262 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011945 ! luminal layer of epithelium intersection_of: UBERON:0011945 ! luminal layer of epithelium intersection_of: part_of UBERON:0002367 ! prostate gland @@ -200210,6 +201328,7 @@ name: myocoele def: "The cavity within a myotome." [http://medical-dictionary.thefreedictionary.com/myocoele] xref: EMAPA:31134 xref: VHOG:0001283 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0003082 ! myotome @@ -200258,7 +201377,6 @@ synonym: "right lung caudal lobe bronchiole" EXACT [EHDAA2:0004094] xref: EHDAA2:0004094 xref: EMAPA:19004 xref: http://www.snomedbrowser.com/Codes/Details/15215000 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003538 ! right lung bronchiole intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002171 ! lower lobe of right lung @@ -200398,6 +201516,7 @@ synonym: "palatum osseum" EXACT [FMA:TA] xref: EMAPA:37444 {source="MA:th"} xref: FMA:59857 is_a: UBERON:0000075 ! subdivision of skeletal system +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000075 ! subdivision of skeletal system intersection_of: subdivision_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 {source="FMA"} ! hard palate @@ -200442,6 +201561,7 @@ synonym: "fovea for ligament of head of femur" EXACT [FMA:43700] synonym: "fovea of head of femur" RELATED [http://en.wikipedia.org/wiki/Fovea_of_head_of_femur] xref: FMA:43700 xref: http://en.wikipedia.org/wiki/Fovea_of_head_of_femur +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004412 ! proximal epiphysis of femur @@ -200460,6 +201580,7 @@ name: patella cartilage element def: "A cartilaginous condensation that has the potential to develop into a patella." [OBOL:automatic] xref: EMAPA:19140 is_a: UBERON:0003860 ! hindlimb mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005863 ! cartilaginous condensation intersection_of: UBERON:0005863 ! cartilaginous condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella @@ -200474,6 +201595,7 @@ name: patella pre-cartilage condensation def: "A pre-cartilage condensation that has the potential to develop into a patella." [OBOL:automatic] xref: EMAPA:18510 is_a: UBERON:0003321 ! mesenchyme of knee +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005866 ! pre-cartilage condensation intersection_of: UBERON:0005866 ! pre-cartilage condensation intersection_of: has_potential_to_develop_into UBERON:0002446 ! patella @@ -200489,6 +201611,7 @@ synonym: "bronchial lumen" EXACT [FMA:62646] synonym: "lumen of bronchus" EXACT [FMA:62646] xref: FMA:62646 xref: http://www.snomedbrowser.com/Codes/Details/199401001 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 {source="FMA"} ! anatomical space intersection_of: luminal_space_of UBERON:0002185 {source="FMA"} ! bronchus @@ -200610,6 +201733,7 @@ xref: Cooper%27s:ligaments xref: FMA:58040 xref: http://www.snomedbrowser.com/Codes/Details/279011006 is_a: UBERON:0000158 {source="FMA"} ! membranous layer +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0005200 ! thoracic mammary gland @@ -200633,6 +201757,7 @@ id: UBERON:0012105 name: baleen plate def: "A keratinous sieve composed of bristles that enables filter feeding in the mouth of mysticete whales." [http://en.wikipedia.org/wiki/baleen] xref: http://en.wikipedia.org/wiki/baleen +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013765 ! digestive system element relationship: composed_primarily_of UBERON:0012106 ! baleen plate bristle relationship: part_of UBERON:0000165 ! mouth @@ -200645,6 +201770,7 @@ def: "A keratinous bristle that enables filter feeding in the mouth of mysticete synonym: "baleen plate fringe" EXACT [] synonym: "fringe of baleen plate" EXACT [] xref: http://en.wikipedia.org/wiki/baleen +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000061 ! anatomical structure relationship: has_part GO:0045095 ! keratin filament relationship: only_in_taxon NCBITaxon:9761 ! Mysticeti @@ -200672,7 +201798,9 @@ synonym: "processus zygomaticus ossis frontalis" EXACT LATIN [http://en.wikipedi xref: FMA:54389 xref: http://en.wikipedia.org/wiki/Zygomatic_process_of_frontal_bone xref: http://www.snomedbrowser.com/Codes/Details/427577001 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0012110 ! frontal process of zygomatic bone relationship: connected_to UBERON:0001683 ! jugal bone relationship: part_of RO:0002577 ! system @@ -200687,6 +201815,7 @@ synonym: "zygomatic bone - frontal process" EXACT [] xref: FMA:52907 xref: http://www.snomedbrowser.com/Codes/Details/116353002 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: connected_to UBERON:0000209 ! tetrapod frontal bone relationship: part_of RO:0002577 ! system relationship: part_of UBERON:0001683 ! jugal bone @@ -200702,6 +201831,7 @@ xref: Diastema:(dentistry) xref: FMA:77271 xref: http://www.snomedbrowser.com/Codes/Details/410003009 xref: MESH:A14.254.333 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0001091 ! calcareous tooth relationship: adjacent_to UBERON:0001091 {minCardinality="2", maxCardinality="2"} ! calcareous tooth @@ -200871,6 +202001,7 @@ synonym: "barbicel" BROAD SENSU [] synonym: "feather hooklet" EXACT [] synonym: "hooklet" BROAD SENSU [] xref: BTO:0003269 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013703 ! integumentary projection relationship: branching_part_of UBERON:0008295 ! feather barbule relationship: part_of UBERON:0000022 ! feather @@ -200891,6 +202022,7 @@ synonym: "tip of snout" RELATED [] xref: EMAPA:37915 {source="MA:th"} xref: FMA:59518 xref: http://www.snomedbrowser.com/Codes/Details/361926005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point property_value: dc-contributor https://github.com/cmungall relationship: part_of UBERON:0007827 {source="FMA"} ! external nose @@ -200905,6 +202037,7 @@ synonym: "eminentia capitata" RELATED [AAO:0000838] synonym: "radial condyle" RELATED [AAO:0000838] synonym: "radial condyle of humerus" EXACT [] xref: AAO:0000838 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus @@ -200915,6 +202048,7 @@ def: "A deep evacuation in the bone, into which the anconeal process of the ulna synonym: "fossa olecrani" EXACT LATIN [http://en.wikipedia.org/wiki/Olecranon_fossa] xref: FMA:23450 xref: Olecranon:fossa +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004404 ! distal epiphysis of humerus @@ -200973,6 +202107,7 @@ synonym: "cartilago pre-pollicis" RELATED [AAO:0000852] synonym: "prepollex" BROAD [AAO:0000852] xref: AAO:0000852 is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0005880 ! prepollex @@ -201071,6 +202206,7 @@ def: "A subdivision of the autopod skeleton consisting of both acropodial skeleo synonym: "digitopodium" RELATED [PHENOSCAPE:ni] synonym: "skeleton of digits" RELATED COMPARATIVE_PREFERRED [] is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0012140 ! digitopodium region @@ -201156,6 +202292,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1840 xref: NLXANAT:20090306 xref: PBA:10093 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] @@ -201177,6 +202314,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1163 xref: NLXANAT:20090307 xref: PBA:10094 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001882 {source="NIFSTD"} ! nucleus accumbens [Term] @@ -201411,6 +202549,7 @@ def: "A space in the rib cage between two successive ribs." [http://orcid.org/00 xref: FMA:12243 xref: http://www.snomedbrowser.com/Codes/Details/243937005 xref: Intercostal:space +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0002228 ! rib relationship: part_of UBERON:0003252 ! thoracic rib cage @@ -201491,6 +202630,7 @@ synonym: "blood vessel of bladder" RELATED [EMAPA:28679] synonym: "blood vessels of bladder" EXACT [EMAPA:28679] synonym: "set of urinary bladder blood vessels" EXACT [] xref: EMAPA:28679 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 {source="EMAPA"} ! vasculature @@ -201516,6 +202656,7 @@ xref: EMAPA:37977 {source="MA:th"} xref: FMA:19650 xref: http://www.snomedbrowser.com/Codes/Details/181424008 xref: Urinary:meatus +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening intersection_of: UBERON:0000161 ! orifice intersection_of: connects UBERON:0010390 ! lumen of urethra @@ -201566,6 +202707,7 @@ synonym: "vesicourethral orifice" EXACT [FMA:85263] xref: FMA:85263 xref: http://en.wikipedia.org/wiki/Internal_urethral_orifice xref: http://www.snomedbrowser.com/Codes/Details/362228001 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening intersection_of: UBERON:0000161 ! orifice intersection_of: connects UBERON:0009958 ! bladder lumen @@ -201584,6 +202726,7 @@ synonym: "nuptial excrescence" EXACT [http://en.wikipedia.org/wiki/Nuptial_pad] synonym: "thumb pad" RELATED [http://en.wikipedia.org/wiki/Nuptial_pad] xref: AAO:0010177 xref: Nuptial:pad +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000981 ! limb external integument structure relationship: capable_of_part_of GO:0007620 ! copulation relationship: only_in_taxon NCBITaxon:8292 ! Amphibia @@ -201594,6 +202737,7 @@ relationship: part_of UBERON:0002102 ! forelimb id: UBERON:0012244 name: stratum intermedium of epidermis def: "A temporary layer between old and new skin that is invalided by white blood cells[Kardong]." [ISBN:0073040584] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0001003 {source="ISBN:0073040584"} ! skin epidermis @@ -201616,6 +202760,7 @@ synonym: "thyroid follicle lumen" EXACT [FMA:68829] synonym: "thyroid follicular space" EXACT [FMA:68829] xref: FMA:68829 xref: Follicular:lumen +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0005305 ! thyroid follicle @@ -201670,6 +202815,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227829 xref: http://www.snomedbrowser.com/Codes/Details/264459002 xref: NCIT:C12310 xref: UMLS:C0227829 {source="ncithesaurus:Ectocervix"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000064 ! organ part @@ -201783,7 +202929,6 @@ synonym: "digit I(CII) of manus" RELATED [] synonym: "wing digit 1 (adult)" RELATED [] synonym: "wing digit 2 (embryonic)" RELATED [] synonym: "wing digit I" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002389 ! manual digit intersection_of: UBERON:0002389 ! manual digit intersection_of: part_of UBERON:5012260 ! alular digit plus metapodial segment @@ -201804,7 +202949,6 @@ synonym: "manual major digit" RELATED [] synonym: "wing digit 2 (adult)" RELATED [] synonym: "wing digit 3 (embryonic)" RELATED [] synonym: "wing digit II" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002389 ! manual digit intersection_of: UBERON:0002389 ! manual digit intersection_of: part_of UBERON:5012261 ! manual major digit (Aves) plus metapodial segment @@ -201823,7 +202967,6 @@ synonym: "manual minor digit" RELATED [] synonym: "wing digit 3 (adult)" RELATED [] synonym: "wing digit 4 (embryonic)" RELATED [] synonym: "wing digit III" RELATED [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002389 ! manual digit intersection_of: UBERON:0002389 ! manual digit intersection_of: part_of UBERON:5012262 ! manual minor digit (Aves) plus metapodial segment @@ -201901,6 +203044,7 @@ synonym: "squamocolumnar junction with the glandular stomach" RELATED [] xref: EMAPA:37640 {source="MA:th"} xref: http://www.snomedbrowser.com/Codes/Details/67204008 xref: MA:0003014 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction relationship: connects UBERON:0008827 ! murine forestomach relationship: connects UBERON:0011953 ! stomach glandular region @@ -201996,6 +203140,8 @@ xref: Nasal:glands xref: NCIT:C22725 xref: UMLS:C1522269 {source="ncithesaurus:Nose_Nasal_Cavity_Nasal_Gland_MMHCC"} is_a: UBERON:0002365 ! exocrine gland +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001826 ! nasal cavity mucosa @@ -202172,6 +203318,7 @@ xref: EMAPA:37893 {source="MA:th"} xref: FMA:35502 xref: http://en.wikipedia.org/wiki/Malleolus xref: http://www.snomedbrowser.com/Codes/Details/361795009 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0004410 ! distal epiphysis of fibula @@ -202212,6 +203359,7 @@ synonym: "navicular fossa of urethra" EXACT [] xref: FMA:19722 xref: http://en.wikipedia.org/wiki/Navicular_fossa_of_male_urethra xref: http://www.snomedbrowser.com/Codes/Details/362233002 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013522 ! subdivision of tube relationship: contributes_to_morphology_of UBERON:0001337 ! spongiose part of urethra @@ -202231,6 +203379,7 @@ synonym: "valve of fossa navicularis of urethra" EXACT [] synonym: "valvula fossae navicularis" EXACT LATIN [MP:anna] xref: FMA:19781 xref: http://www.snomedbrowser.com/Codes/Details/367737008 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: contributes_to_morphology_of UBERON:0012294 ! navicular fossa of spongiose part of urethra @@ -202248,6 +203397,7 @@ synonym: "urethral crista" EXACT [] xref: FMA:19718 xref: http://www.snomedbrowser.com/Codes/Details/362231000 xref: Urethral:crest +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: contributes_to_morphology_of UBERON:0000057 ! urethra relationship: part_of UBERON:0012299 ! mucosa of urethra @@ -202299,6 +203449,7 @@ xref: EMAPA:37912 {source="MA:th"} xref: FMA:76904 xref: http://www.snomedbrowser.com/Codes/Details/362229009 is_a: UBERON:0000344 ! mucosa +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -202367,6 +203518,7 @@ xref: http://en.wikipedia.org/wiki/Orifice_of_ureter xref: http://www.snomedbrowser.com/Codes/Details/181415004 xref: NCIT:C12337 is_a: UBERON:0000161 {source="FMA"} ! orifice +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010418 ! urethral opening relationship: contributes_to_morphology_of UBERON:0009973 ! ureterovesical junction relationship: part_of UBERON:0006082 ! fundus of urinary bladder @@ -202463,6 +203615,7 @@ name: maxillary process ectoderm xref: EHDAA2:0004599 xref: EMAPA:17637 xref: FMA:312685 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005868 {source="EHDAA2"} ! maxillary prominence @@ -202473,7 +203626,6 @@ name: 1st arch maxillary ectoderm synonym: "ectoderm of maxillary component" EXACT [EMAPA:16389] xref: EHDAA2:0000039 xref: EMAPA:16389 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium @@ -202547,6 +203699,7 @@ xref: EMAPA:37983 {source="MA:th"} xref: FMA:19984 xref: Vaginal:orifice is_a: UBERON:0000161 ! orifice +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0000996 ! vagina @@ -202657,6 +203810,7 @@ def: "The caudal, swollen portion of the gubernaculum." [http://orcid.org/0000-0 synonym: "bulb of gubernaculum" NARROW [] synonym: "pars infravaginalis gubernaculi" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/11997885] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0008843 ! gubernaculum testis @@ -202670,6 +203824,7 @@ synonym: "preputial gland of penis" RELATED INCONSISTENT [FMA:19653] xref: FMA:19653 xref: http://en.wikipedia.org/wiki/Hirsuties_coronae_glandis is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001332 {source="FMA"} ! prepuce of penis relationship: present_in_taxon NCBITaxon:9606 {source="Preputial:gland"} ! Homo sapiens @@ -202682,6 +203837,7 @@ synonym: "penis spike" RELATED [] synonym: "penis spine" RELATED [] xref: Penile:spines is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000989 ! penis relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -202710,6 +203866,7 @@ xref: MA:0003030 xref: NCIT:C77659 xref: UMLS:C2698431 {source="ncithesaurus:Nasal-Associated_Lymphoid_Tissue"} is_a: UBERON:0001962 ! gut-associated lymphoid tissue +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001961 ! mucosa-associated lymphoid tissue intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx @@ -202739,6 +203896,7 @@ xref: MESH:D001956 xref: NCIT:C12318 xref: UMLS:C0006205 {source="ncithesaurus:Broad_Ligament"} is_a: UBERON:0000211 {source="MESH"} ! ligament +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: connects UBERON:0000459 ! uterine wall relationship: connects UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0002095 ! mesentery @@ -202760,6 +203918,7 @@ name: navicular bursa def: "A fluid-filled sac that lies between the navicular bone and the deep digital flexor muscle." [http://medical-dictionary.thefreedictionary.com/navicular+bursa] synonym: "bursa podotrochlearis" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/370660009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003668 ! synovial bursa relationship: only_in_taxon NCBITaxon:9788 ! Equidae relationship: part_of UBERON:0002470 ! autopod region @@ -202804,6 +203963,7 @@ xref: MA:0003045 xref: MESH:D002420 xref: NCIT:C12689 xref: UMLS:C0007458 {source="ncithesaurus:Cauda_Equina"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0009623 {source="MESH"} ! spinal nerve root @@ -202867,6 +204027,7 @@ id: UBERON:0012351 name: urachal lumen def: "An anatomical space that is enclosed by a urachus." [OBOL:automatic] synonym: "urachus lumen" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0002068 ! urachus @@ -202880,6 +204041,7 @@ def: "Extracellular matrix secreted by intraglomerular mesangial cells." [MP:001 subset: pheno_slim synonym: "extracellular mesangial matrix" EXACT [MP:0011338] xref: EMAPA:37907 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: composed_primarily_of GO:0031012 ! extracellular matrix relationship: part_of UBERON:0002319 ! mesangium @@ -203051,6 +204213,7 @@ def: "Portion of substance contained within the thyroid follicle lumen. Contains synonym: "thyroid colloid" EXACT [FMA:68831] synonym: "thyroid follicle colloid" EXACT [FMA:68831] xref: FMA:68831 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 {source="FMA"} ! organism substance relationship: has_part PR:000016283 ! thyroglobulin relationship: located_in UBERON:0012246 ! thyroid follicular lumen @@ -203154,6 +204317,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0226920 xref: http://www.snomedbrowser.com/Codes/Details/245830008 xref: NCIT:C54223 xref: UMLS:C0226920 {source="ncithesaurus:Retromolar_Trigone"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001828 ! gingiva @@ -203187,6 +204351,7 @@ xref: FMA:15930 xref: http://linkedlifedata.com/resource/umls/id/C1288327 xref: NCIT:C32206 xref: UMLS:C1288327 {source="ncithesaurus:Bladder_Muscular_Coat"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0001255 ! urinary bladder @@ -203202,6 +204367,7 @@ synonym: "circular muscle layer of segment of large intestine" RELATED [FMA:8116 xref: EMAPA:37558 {source="MA:th"} xref: FMA:81160 xref: MA:0001548 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle @@ -203215,6 +204381,7 @@ synonym: "longitudinal muscle layer of zone of large intestine" RELATED [FMA:636 xref: EMAPA:37559 {source="MA:th"} xref: FMA:63637 xref: MA:0001549 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle @@ -203236,6 +204403,7 @@ xref: EMAPA:37562 {source="MA:th"} xref: FMA:14935 xref: http://www.snomedbrowser.com/Codes/Details/54658003 xref: MA:0001560 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0004239 ! small intestine smooth muscle @@ -203258,6 +204426,7 @@ xref: EMAPA:37563 {source="MA:th"} xref: FMA:14936 xref: http://www.snomedbrowser.com/Codes/Details/59150006 xref: MA:0001561 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: part_of UBERON:0004239 ! small intestine smooth muscle @@ -203309,6 +204478,7 @@ def: "Most proximal cloacal compartment, into which the large intestine empties[ synonym: "cloacal coprodeum" EXACT [] synonym: "coprodaeum" EXACT [] synonym: "coprodeal portion of cloaca" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000162 ! cloaca relationship: proximalmost_part_of UBERON:0000162 ! cloaca @@ -203321,6 +204491,7 @@ synonym: "cloacal urodeum" EXACT [] synonym: "urodaeum" EXACT [] synonym: "urodeal portion of cloaca" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/81191004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000162 ! cloaca @@ -203369,6 +204540,7 @@ def: "A microvillus layer that is striated and found in the intestine." [http:// synonym: "striated border" RELATED [FMA:70978] xref: FMA:70978 xref: NCIT:C33634 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012423 ! layer of microvilli relationship: part_of UBERON:0000160 ! intestine @@ -203387,6 +204559,7 @@ def: "A brush border layer that is part of a intestine." [OBOL:automatic] comment: Consider merging into UBERON:0012425 synonym: "brush border microvillus layer of intestine" EXACT [] synonym: "intestinal brush border" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012424 ! brush border layer intersection_of: UBERON:0012424 ! brush border layer intersection_of: part_of UBERON:0000160 ! intestine @@ -203398,6 +204571,7 @@ name: proximal convoluted tubule brush border def: "A brush border layer that is part of a proximal tubule in the kidney." [http://en.wikipedia.org/wiki/Microvillus#Function, http://orcid.org/0000-0002-6601-2165] synonym: "kidney brush border layer" BROAD [] synonym: "proximal tubule brush border layer" BROAD [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012424 ! brush border layer intersection_of: UBERON:0012424 ! brush border layer intersection_of: part_of UBERON:0001287 ! proximal convoluted tubule @@ -203418,6 +204592,7 @@ xref: FMA:14073 xref: http://linkedlifedata.com/resource/umls/id/C0229619 xref: NCIT:C13051 xref: UMLS:C0229619 {source="ncithesaurus:Hematopoietic_Tissue"} +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034769 {source="FMA"} ! lymphomyeloid tissue intersection_of: UBERON:0000479 ! tissue intersection_of: site_of GO:0030097 ! hemopoiesis @@ -203436,6 +204611,7 @@ synonym: "tunica fibrosa" BROAD [] xref: FMA:58102 xref: http://en.wikipedia.org/wiki/Fibrous_tunic_of_eyeball xref: http://www.snomedbrowser.com/Codes/Details/361318005 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004923 {source="FMA"} ! organ component layer is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0000964 ! cornea @@ -203460,6 +204636,7 @@ id: UBERON:0012438 name: blastema of regenerating fin/limb def: "A blastema that is part of a regenerating fin/limb." [OBOL:automatic] xref: ZFA:0001270 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005306 ! blastema intersection_of: UBERON:0005306 ! blastema intersection_of: part_of UBERON:2001269 ! regenerating fin/limb @@ -203470,6 +204647,7 @@ id: UBERON:0012439 name: blastema of regenerating digit tip def: "A blastema that is part of a distal segment of digit." [OBOL:automatic] synonym: "digit blastema" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005306 ! blastema intersection_of: UBERON:0005306 ! blastema intersection_of: part_of UBERON:0009551 ! distal segment of digit @@ -203504,6 +204682,7 @@ xref: EHDAA2:0000447 xref: FMA:14711 xref: http://www.snomedbrowser.com/Codes/Details/264473006 xref: Omental:foramen +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001179 ! peritoneal cavity @@ -203534,6 +204713,7 @@ is_obsolete: true id: UBERON:0012447 name: podotheca def: "A horny sheath covering the lower leg of some birds." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000981 ! limb external integument structure relationship: has_part UBERON:0007381 ! epidermal scale relationship: part_of UBERON:0001003 ! skin epidermis @@ -203611,6 +204791,7 @@ name: nerve ending def: "Specialized terminations of peripheral neurons. Nerve endings include NEUROEFFECTOR JUNCTION(s) by which neurons activate target organs and sensory receptors (see RECEPTORS, SENSORY) which transduce information from the various sensory modalities and send it centrally in the nervous system. Presynaptic nerve endings are PRESYNAPTIC TERMINALS." [MESH:A08.800.550] synonym: "nerve ending" RELATED [MESH:A08.800.550] xref: MESH:D009411 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: part_of UBERON:0000010 ! peripheral nervous system relationship: part_of UBERON:0001027 ! sensory nerve @@ -203684,6 +204865,7 @@ def: "Most distal cloacal compartment; function is copulation and in some specie synonym: "proctodeal wall of cloaca" RELATED [] synonym: "proctodeum" RELATED INCONSISTENT [] xref: http://www.snomedbrowser.com/Codes/Details/298233001 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: distalmost_part_of UBERON:0000162 ! cloaca relationship: part_of UBERON:0000162 ! cloaca @@ -203696,6 +204878,7 @@ synonym: "cloaca lumen" EXACT [ZFA:0000330] synonym: "cloacal chamber" EXACT [ZFA:0000330] xref: TAO:0000330 xref: ZFA:0000330 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000162 ! cloaca @@ -203710,6 +204893,7 @@ def: "The opening of the cloacal chamber to the outside of the organism. Birds m synonym: "cloacal opening" EXACT [] synonym: "cloacal orifice" RELATED [] synonym: "vent" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: part_of UBERON:0000162 ! cloaca @@ -203719,6 +204903,7 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012465 name: lumen of terminal part of digestive tract def: "An anatomical space that is enclosed by a terminal part of digestive tract." [OBOL:automatic] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0006866 ! terminal part of digestive tract @@ -203732,6 +204917,7 @@ synonym: "extraembryonic cavities" RELATED PLURAL [EHDAA2:0000472] xref: EHDAA2:0000472 xref: EMAPA:16054 xref: VHOG:0000767 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0016887 ! entire extraembryonic component @@ -203807,6 +204993,7 @@ synonym: "ligamentum hepatoduodenale" EXACT [http://en.wikipedia.org/wiki/Hepato xref: FMA:16521 xref: Hepatoduodenal:ligament xref: http://www.snomedbrowser.com/Codes/Details/362706000 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element @@ -203944,6 +205131,7 @@ synonym: "mucosa of cloaca" EXACT [] synonym: "mucosa of organ of cloaca" EXACT [] synonym: "mucous membrane of cloaca" EXACT [] synonym: "organ mucosa of cloaca" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000162 ! cloaca @@ -203993,6 +205181,7 @@ relationship: part_of UBERON:0000162 ! cloaca id: UBERON:0012485 name: cloacal villus synonym: "cloacal villi" EXACT PLURAL [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012423 ! layer of microvilli intersection_of: UBERON:0012423 ! layer of microvilli intersection_of: part_of UBERON:0000162 ! cloaca @@ -204014,6 +205203,7 @@ id: UBERON:0012487 name: vaginal sphincter def: "A sphincter muscle that is part of a vagina." [OBOL:automatic] synonym: "sphincter of vagina" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004590 ! sphincter muscle is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0004590 ! sphincter muscle @@ -204067,6 +205257,7 @@ synonym: "muscularis externa of anal canal" EXACT [] synonym: "muscularis propria of anal canal" EXACT [FMA:15708] xref: FMA:15708 xref: http://www.snomedbrowser.com/Codes/Details/362171000 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011198 ! muscle layer of large intestine intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0000159 ! anal canal @@ -204166,6 +205357,7 @@ synonym: "tunica adventitia (esophagus)" EXACT [FMA:63006] synonym: "tunica adventitia oesophageae" EXACT [FMA:TA] xref: FMA:63006 xref: http://www.snomedbrowser.com/Codes/Details/85950006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005742 ! adventitia intersection_of: UBERON:0005742 ! adventitia intersection_of: part_of UBERON:0001043 ! esophagus @@ -204267,6 +205459,7 @@ xref: FMA:18305 xref: http://en.wikipedia.org/wiki/Ampulla_of_uterine_tube xref: http://www.snomedbrowser.com/Codes/Details/245497001 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube @@ -204291,6 +205484,7 @@ name: gastroduodenal junction def: "An anatomical junction that connects a stomach and connects a duodenum." [OBOL:automatic] xref: FMA:17046 xref: http://www.snomedbrowser.com/Codes/Details/264014000 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0000945 ! stomach @@ -204329,8 +205523,8 @@ relationship: part_of UBERON:0000059 ! large intestine id: UBERON:0012925 name: bronchial bud xref: BTO:0001641 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005153 {source="GO:0060441"} ! epithelial bud +is_a: UBERON:0005911 ! endo-epithelium relationship: develops_from UBERON:0005597 ! lung primordium [Term] @@ -204352,6 +205546,7 @@ synonym: "crista palatina" RELATED [FMA:59201] synonym: "torus palatinus" EXACT LATIN [http://palaeos.com/vertebrates/glossary/glossaryP.html] xref: FMA:59201 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -204367,6 +205562,7 @@ xref: http://palaeos.com/vertebrates/glossary/images/popliteal.gif xref: http://www.snomedbrowser.com/Codes/Details/362791002 xref: NCIT:C103222 xref: Popliteal:fossa +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur @@ -204384,6 +205580,7 @@ comment: The rattle is composed of a series of hollow, interlocked segments made synonym: "snake rattle" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/10734004 xref: Rattle +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: only_in_taxon NCBITaxon:8570 ! Serpentes relationship: part_of UBERON:0007812 ! post-anal tail @@ -204516,6 +205713,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1208 xref: http://www.snomedbrowser.com/Codes/Details/279337001 xref: NCIT:C32292 xref: Sulcus:(neuroanatomy) +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus intersection_of: UBERON:0000093 ! sulcus intersection_of: part_of UBERON:0000955 ! brain @@ -204643,6 +205841,7 @@ synonym: "urethral bulb" RELATED [http://en.wikipedia.org/wiki/Bulb_of_penis] xref: FMA:19614 xref: http://en.wikipedia.org/wiki/Bulb_of_penis is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis @@ -204671,6 +205870,7 @@ id: UBERON:0013131 name: lobe of tail synonym: "fluke" NARROW [] synonym: "tail fluke" NARROW [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0007812 ! post-anal tail @@ -204711,6 +205911,7 @@ name: interdental plate def: "The interdental plate refers to the bone-filled mesial-distal region between the teeth." [http://en.wikipedia.org/wiki/Interdental_plate] xref: Interdental:plate is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: located_in UBERON:0012111 ! diastema relationship: located_in UBERON:0012111 ! diastema @@ -204761,6 +205962,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/279967000 xref: NCIT:C32377 xref: UMLS:C1261099 {source="ncithesaurus:Coronary_Ligament"} is_a: CARO:0000003 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0013139 ! ligament of liver relationship: attaches_to UBERON:0001103 ! diaphragm relationship: part_of RO:0002577 ! system @@ -204778,6 +205980,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230238 xref: http://www.snomedbrowser.com/Codes/Details/48536008 xref: NCIT:C32997 xref: UMLS:C0230238 {source="ncithesaurus:Liver_Ligament"} +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament is_a: UBERON:0013765 ! digestive system element @@ -204876,6 +206079,7 @@ xref: EHDAA2:0000185 xref: EMAPA:18631 xref: MA:0003184 xref: VHOG:0001328 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007798 {source="cjm"} ! vascular system relationship: part_of UBERON:0000955 {source="EHDAA2"} ! brain relationship: part_of UBERON:0004582 {source="VHOG-modified"} ! venous system @@ -204896,7 +206100,6 @@ comment: develops into cerebral aqueduct synonym: "midbrain vesicle" EXACT [EHDAA2:0001103] xref: EHDAA2:0001103 xref: http://www.snomedbrowser.com/Codes/Details/361481005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013150 ! future brain vesicle relationship: develops_from UBERON:0013147 {source="EHDAA2"} ! early mesencephalic vesicle relationship: part_of UBERON:0001891 {source="EHDAA2"} ! midbrain @@ -204923,6 +206126,7 @@ synonym: "secondary brain vesicle" NARROW [] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2499 xref: http://www.snomedbrowser.com/Codes/Details/360409004 xref: NCIT:C34259 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010064 {source="EHDAA2"} ! open anatomical space relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0005281 {source="EHDAA2"} ! ventricular system of central nervous system @@ -204954,6 +206158,7 @@ synonym: "primary interventricular foramen" RELATED [EHDAA2:0004064] xref: EHDAA2:0004064 xref: http://en.wikipedia.org/wiki/Primary_interventricular_foramen is_a: UBERON:0004111 {source="EHDAA2"} ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: located_in UBERON:0002094 {source="EHDAA2"} ! interventricular septum relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0000948 ! heart @@ -204979,6 +206184,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228130 xref: NCIT:C32137 xref: UMLS:C0228130 {source="ncithesaurus:Arachnoid_Villus"} is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002362 {source="FMA"} ! arachnoid mater [Term] @@ -205001,7 +206207,6 @@ name: 1st arch mandibular ectoderm synonym: "ectoderm of mandibular component" EXACT [EMAPA:16383] xref: EHDAA2:0000032 xref: EMAPA:16383 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015833 ! foregut epithelium @@ -205138,6 +206343,8 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=646 xref: http://en.wikipedia.org/wiki/Vallecula_of_cerebellum xref: NCIT:C12237 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -205384,6 +206591,7 @@ xref: FMA:18613 xref: http://linkedlifedata.com/resource/umls/id/C0227878 xref: NCIT:C33243 xref: UMLS:C0227878 {source="ncithesaurus:Ovarian_Cortex"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001851 ! cortex is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0001851 ! cortex @@ -205405,6 +206613,7 @@ xref: http://en.wikipedia.org/wiki/Medulla_of_ovary xref: http://linkedlifedata.com/resource/umls/id/C0227879 xref: NCIT:C33245 xref: UMLS:C0227879 {source="ncithesaurus:Ovarian_Medulla"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000958 ! medulla of organ is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000958 ! medulla of organ @@ -205523,8 +206732,8 @@ name: nasal tentacle def: "A fleshy appendage ringing the snout of a Star-nosed mole." [http://en.wikipedia.org/wiki/Star-nosed_mole] synonym: "nasal ray" RELATED [] xref: Star-nosed:mole -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000021 ! cutaneous appendage +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part UBERON:0011255 ! Eimer's organ relationship: only_in_taxon NCBITaxon:9373 ! Talpidae relationship: part_of UBERON:0001003 ! skin epidermis @@ -205534,6 +206743,7 @@ id: UBERON:0013207 name: entepicondylar foramen def: "A canal through the medial epicondyle at the distal end of the vertebrate humerus, usually traversed by the median nerve and brachial artery." [http://www.jstor.org/discover/10.2307/2422468] xref: Entepicondylar:foramen +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0001148 ! median nerve relationship: conduit_for UBERON:0001398 ! brachial artery @@ -205634,6 +206844,7 @@ id: UBERON:0013217 name: zygomatic plate def: "In rodent anatomy, the zygomatic plate is a bony plate derived from the flattened front part of the zygomatic arch (cheekbone). At the back, it connects to the front (maxillary) root of the zygomatic arch, and at the top it is connected to the rest of the skull via the antorbital bridge. It is part of the maxillary bone, or upper jaw, which also contains the upper cheekteeth. Primitively, rodents have a nearly horizontal zygomatic plate. In association with specializations in zygomasseteric system, several distinct morphologies have developed across the order. The term is also used for an analogous structure in some South American typotheres, including Pseudotypotherium and Medistylus." [http://en.wikipedia.org/wiki/Zygomatic_plate] xref: Zygomatic:plate +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla relationship: part_of UBERON:0002500 ! zygomatic arch @@ -205667,6 +206878,7 @@ id: UBERON:0013220 name: foramen of Panizza def: "A hole with that connects the left and right aorta in animals of the order Crocodilia." [http://en.wikipedia.org/wiki/Foramen_of_Panizza] xref: http://en.wikipedia.org/wiki/Foramen_of_Panizza +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: connects UBERON:0000947 {minCardinality="2", maxCardinality="2"} ! aorta relationship: connects UBERON:0000947 ! aorta @@ -205776,6 +206988,7 @@ name: eyelid gland def: "Any gland that is part of an eyelid. This includes sebaceous glands (Zeis gland, tarsal gland) and sweat glands (Moll's gland)." [http://orcid.org/0000-0002-6601-2165] synonym: "gland of eyelid" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/280574000 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004859 ! eye gland is_a: UBERON:0015152 ! gland of ocular region intersection_of: UBERON:0002530 ! gland @@ -205839,6 +207052,7 @@ name: violet gland def: "The violet gland or supracaudal gland is an important gland located on the upper surface of the tail of certain mammals, including European badgers and canids such as foxes, wolves the domestic dog, as well as the domestic cat. It is used for intra species signalling, scent marking, and contributes to the strong odor of foxes in particular." [http://en.wikipedia.org/wiki/Violet_gland] synonym: "supracaudal gland" RELATED [] xref: Violet:gland +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011252 ! scent gland relationship: only_in_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0007812 ! post-anal tail @@ -205944,6 +207158,7 @@ def: "Solid evaginations of the UG sinus that develops into a vaginal plate that xref: http://linkedlifedata.com/resource/umls/id/C1519330 xref: NCIT:C34297 xref: UMLS:C1519330 {source="ncithesaurus:Sinovaginal_Bulb"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000164 ! primitive urogenital sinus @@ -205974,9 +207189,9 @@ synonym: "Waldeyer's organ" EXACT [FMA:74055] xref: FMA:74055 xref: http://en.wikipedia.org/wiki/Paradidymis xref: http://www.snomedbrowser.com/Codes/Details/279643005 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure +is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule relationship: part_of UBERON:0000079 ! male reproductive system @@ -205989,10 +207204,10 @@ synonym: "parooephoron" RELATED [http://en.wikipedia.org/wiki/Paroophoron] synonym: "paroöphoron" RELATED [http://en.wikipedia.org/wiki/Paroophoron] xref: FMA:18692 xref: http://en.wikipedia.org/wiki/Paroophoron -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003914 ! epithelial tube is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006590 {source="FMA"} ! remnant of embryonic structure +is_a: UBERON:0012275 ! meso-epithelium relationship: develops_from UBERON:0000083 {source="Wikipedia"} ! mesonephric tubule relationship: part_of UBERON:0000474 ! female reproductive system @@ -206070,6 +207285,7 @@ xref: EMAPA:37892 {source="MA:th"} xref: FMA:33738 xref: http://en.wikipedia.org/wiki/Body_of_fibula xref: http://www.snomedbrowser.com/Codes/Details/302528006 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001446 ! fibula @@ -206090,6 +207306,7 @@ xref: FMA:33125 xref: http://en.wikipedia.org/wiki/Body_of_tibia xref: http://www.snomedbrowser.com/Codes/Details/302525009 xref: MA:0003049 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0000979 ! tibia @@ -206102,6 +207319,7 @@ def: "A silver reflective layer in the outer choroid, adjacent to the sclera, fr synonym: "choroid stratum argenteum" EXACT [] synonym: "stratum argenteum" BROAD [http://www.ncbi.nlm.nih.gov/pubmed/14738502] is_a: UBERON:0000957 ! lamina +is_a: UBERON:0010313 ! neural crest-derived structure relationship: has_quality PATO:0001297 ! reflectivity relationship: has_quality PATO:0002124 ! laminar relationship: part_of UBERON:0001776 ! optic choroid @@ -206129,8 +207347,8 @@ synonym: "outer layer of choroid proper" EXACT [FMA:58435] synonym: "Sattler's layer" NARROW [FMA:58435] synonym: "vessel layer of choroid" EXACT [FMA:58435] xref: FMA:58435 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: composed_primarily_of UBERON:0001981 ! blood vessel relationship: part_of UBERON:0001776 {source="FMA"} ! optic choroid @@ -206282,7 +207500,9 @@ id: UBERON:0013442 name: postorbital process def: "The Postorbital Process marks the rear, upper edge of the eye socket and is a projection from the frontal bone." [http://en.wikipedia.org/wiki/Postorbital_process] xref: Postorbital:process +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] @@ -206318,6 +207538,7 @@ name: simian shelf def: "A bony buttress on the inner surface of the foremost part of the ape mandible, functioning to reinforce the mandible." [http://web.archive.org/web/20060830160800/www.anth.ucsb.edu/glossary/glossary.html] xref: Simian:shelf is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: only_in_taxon NCBITaxon:314295 ! Hominoidea relationship: part_of UBERON:0001684 ! mandible @@ -206407,6 +207628,7 @@ name: zygomatic fossa def: "The Zygomatic Fossa is an irregularly shaped cavity, situated below and on the inner side of the zygoma; bounded, in front, by the zygomatic surface of the superior maxillary bone and the ridge which descends from its malar process; behind, by the posterior border of the external pterygoid plate and the eminentia articularis; above, by the pterygoid ridge on the outer surface of the great wing of the sphenoid and the under part of the squamous portion of the temporal; below by the alveolar border of the superior maxilla; internally, by the external pterygoid plate; and externally, by the zygomatic arch ramus of the lower jaw. It contains the lower part of the temporal, the External and Internal pterygoid muscles, the internal maxillary artery and vein, and inferior maxillary nerve and their branches. At its upper and inner part may be observed two fissures, the spheno-maxillary and pterygo-maxillary." [http://en.wikipedia.org/wiki/Zygomatic_fossa] xref: NCIT:C33898 xref: Zygomatic:fossa +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0002500 ! zygomatic arch @@ -206427,6 +207649,7 @@ name: retromolar space def: "The retromolar space or retromolar gap is a space at the rear of a mandible, between the back of the last molar and the anterior edge of the ascending ramus where it crosses the alveolar margin.[WP]." [http://en.wikipedia.org/wiki/Retromolar_space] synonym: "retromolar gap" EXACT [http://en.wikipedia.org/wiki/Retromolar_space] xref: Retromolar:space +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001684 ! mandible relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis @@ -206493,6 +207716,7 @@ relationship: part_of UBERON:0010033 ! posterior part of tongue id: UBERON:0013476 name: dermal layer of tongue synonym: "tongue (dermal layer)" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004923 ! organ component layer relationship: part_of UBERON:0001723 ! tongue @@ -206526,6 +207750,7 @@ def: "A blood vessel endothelium that is part of a lung [Automatically generated synonym: "respiratory endothelium" RELATED [BTO:0004128] xref: BTO:0004128 xref: CALOHA:TS-0573 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000115 ! lung epithelium is_a: UBERON:0004702 ! respiratory system blood vessel endothelium intersection_of: UBERON:0004638 ! blood vessel endothelium @@ -206616,6 +207841,7 @@ synonym: "plantar print" RELATED [MESH:E05.256] xref: http://linkedlifedata.com/resource/umls/id/C1516920 xref: NCIT:C32524 xref: UMLS:C1516920 {source="ncithesaurus:Epidermal_Ridges"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000981 ! limb external integument structure relationship: part_of UBERON:0001003 ! skin epidermis relationship: part_of UBERON:0002544 ! digit @@ -206644,6 +207870,7 @@ synonym: "superficial layer of deep cervical fascia" EXACT [FMA:57805] xref: FMA:57805 xref: http://en.wikipedia.org/wiki/Superficial_cervical_fascia xref: http://www.snomedbrowser.com/Codes/Details/175208005 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013491 ! cervical fascia relationship: has_part UBERON:0001013 ! adipose tissue relationship: immediately_deep_to UBERON:0002067 ! dermis @@ -206767,6 +207994,7 @@ id: UBERON:0013499 name: glossopharyngeal-vagus IX-X preganglion complex synonym: "glossopharyngeal-vagus preganglion complex" RELATED [EMAPA:16662] xref: EMAPA:16662 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001714 {source="cjm"} ! cranial ganglion @@ -207057,6 +208285,7 @@ synonym: "cavity of stomach" EXACT [FMA:14585] synonym: "gastric cavity" RELATED [FMA:14585] xref: EMAPA:18395 xref: FMA:14585 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000945 ! stomach @@ -207084,6 +208313,7 @@ relationship: part_of UBERON:0003051 {source="EHDAA2"} ! ear vesicle id: UBERON:0013527 name: pectoral flipper tubercle def: "A bump or swelling adorining the head and leading edge of a pectoral flipper, associated with the multiple joints and terminal phalanges as found in the multiple phalanges of the humpback whale." [http://orcid.org/0000-0002-6601-2165] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005813 ! tubercle relationship: part_of UBERON:0002102 ! forelimb @@ -207131,6 +208361,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/384717008 xref: NCIT:C94868 xref: WikipediaCategory:Brodmann_areas is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="FMA", source="Wikipedia"} ! cerebral cortex [Term] @@ -207150,6 +208381,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2436 xref: MBA:254 xref: Retrosplenial:region is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003027 {source="BTO"} ! cingulate cortex [Term] @@ -207823,6 +209055,7 @@ name: koniocortex def: "Regions of the cerebal cortex characterized by a particularly well-developed inner granular layer (layer 4); this type of cerebral cortex is represented by the primary sensory Brodmann area 17 of the visual cortex, Brodmann areas 1-3 of the somatic sensory cortex, and Brodmann area 41 of the auditory cortex." [http://www.medilexicon.com/medicaldictionary.php?t=47303] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2471 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -208207,6 +209440,7 @@ def: "The intertrochanteric crest is a bony ridge located on the posterior side comment: Together with the intertrochanteric line on the anterior side of the head, the crest mark the transition between of the neck of femur into the shaft of femur. An elevation between the middle and proximal third of the crest is known as the quadrate tubercle. The upper half of the crest forms the posterior border of the greater trochanter. The distal capsular attachment on the femur follows the shape of the irregular rim between the head and the neck. As a consequence, the capsule of the hip joint attaches in the region of the intertrochanteric line on the anterior side, but a finger away from the intertrochanteric crest on the posterior side of the head xref: FMA:75100 xref: Intertrochanteric:crest +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line relationship: connects UBERON:0002503 ! greater trochanter relationship: connects UBERON:0002504 ! lesser trochanter @@ -208218,6 +209452,7 @@ name: intertrochanteric line def: "The intertrochanteric line (or spiral line of the femur) is a line located on the anterior side of the proximal end of the femur that stretches between the lesser trochanter and the greater trochanter forming the base of the neck of the femur, roughly following the direction of the shaft of the femur." [http://en.wikipedia.org/wiki/Intertrochanteric_line] xref: FMA:74587 xref: Intertrochanteric:line +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 {source="FMA"} ! anatomical line relationship: part_of UBERON:0004412 ! proximal epiphysis of femur @@ -208380,6 +209615,7 @@ xref: Masseteric:artery xref: NCIT:C53052 xref: UMLS:C0226149 {source="ncithesaurus:Masseteric_Artery"} is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: supplies UBERON:0001597 ! masseter muscle relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery @@ -208408,6 +209644,7 @@ name: velar skeleton def: "Subdivision of skeleton that is part of the velum and consists of a complex arrangement of thin cartilage rods and arches." [http://orcid.org/0000-0002-6601-2165, ISBN:9780226315683] synonym: "skeleton of velum" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: CARO:0000003 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010912 ! subdivision of skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:0012121 ! respiratory velum @@ -208425,6 +209662,8 @@ synonym: "membrana elastica externa" EXACT [] synonym: "notochordal sheath" RELATED [XAO:0001020] xref: XAO:0001020 is_a: UBERON:0000479 {source="XAO"} ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: bounding_layer_of UBERON:0002328 ! notochord relationship: part_of UBERON:0002328 ! notochord @@ -208435,6 +209674,7 @@ def: "A diverticulum on the lingual aspect of the soft palate of male dromedarie synonym: "dulaa" EXACT [] synonym: "dulah" EXACT [] xref: Dulla:(organ) +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: located_in UBERON:0000167 ! oral cavity relationship: only_in_taxon NCBITaxon:9836 ! Camelus @@ -208608,6 +209848,7 @@ synonym: "peripheral retina" EXACT [XAO:0004458] xref: http://www.snomedbrowser.com/Codes/Details/264141008 xref: XAO:0004458 is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000966 ! retina [Term] @@ -208758,6 +209999,7 @@ xref: BTO:0001852 xref: BTO:0003248 xref: CALOHA:TS-0092 is_a: UBERON:0001986 ! endothelium +is_a: UBERON:0010371 ! ecto-epithelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000955 ! brain @@ -208798,7 +210040,7 @@ def: "Epithelium lining the exocrine pancreas." [CALOHA:TS-2108] synonym: "epithelium of exocrine pancreas" RELATED [CALOHA:TS-2108] synonym: "exocrine pancreas epithelial cell" RELATED [CALOHA:TS-2108] xref: CALOHA:TS-2108 -is_a: UBERON:0000483 ! epithelium +is_a: UBERON:0005911 ! endo-epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000017 ! exocrine pancreas relationship: part_of UBERON:0000017 ! exocrine pancreas @@ -208890,6 +210132,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1518428 xref: NCIT:C34230 xref: UMLS:C1518428 {source="ncithesaurus:Notochordal_Canal"} is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0006268 ! notochordal process relationship: part_of UBERON:0006268 ! notochordal process @@ -208926,6 +210169,7 @@ def: "A bone spine that is part of a ilium." [OBOL:automatic] xref: FMA:82509 xref: http://www.snomedbrowser.com/Codes/Details/272712007 xref: Iliac:spine +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013706 ! bone spine intersection_of: UBERON:0013706 ! bone spine intersection_of: part_of UBERON:0001273 ! ilium @@ -209016,6 +210260,7 @@ def: "One of the branches of the ilio-marsupialis that attaches to a pouch nippl synonym: "retractor mammae" RELATED [] is_a: CARO:0000003 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: has_muscle_insertion UBERON:0002030 ! nipple relationship: has_muscle_insertion UBERON:0009118 ! marsupium relationship: part_of UBERON:0013715 ! ilio-marsupialis muscle @@ -209058,6 +210303,7 @@ synonym: "dartos layer of scrotum" EXACT [] synonym: "dartos tunic" RELATED [http://en.wikipedia.org/wiki/Dartos] xref: FMA:27647 xref: http://www.snomedbrowser.com/Codes/Details/279582001 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013718 ! dartos muscle intersection_of: UBERON:0013718 ! dartos muscle @@ -209072,6 +210318,8 @@ name: dartos muscle of labia majora def: "A dartos muscle that is part of a female reproductive system." [OBOL:automatic] synonym: "dartos layer of labia" EXACT [] synonym: "dartos muliebris" RELATED [http://en.wikipedia.org/wiki/Dartos] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0013718 ! dartos muscle intersection_of: UBERON:0013718 ! dartos muscle @@ -209125,6 +210373,7 @@ def: "Fluid contained within the notochordal canal." [http://animaldiversity.org comment: Distinct feature of coelocanths synonym: "notochord fluid" EXACT [] synonym: "portion of notochordal fluid" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006314 ! bodily fluid intersection_of: UBERON:0006314 ! bodily fluid intersection_of: located_in UBERON:0013704 ! notochordal canal @@ -209151,6 +210400,7 @@ xref: AAO:0011018 xref: VHOG:0001567 xref: XAO:0003145 is_a: UBERON:0000020 ! sense organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: capable_of GO:0050910 ! detection of mechanical stimulus involved in sensory perception of sound relationship: has_part CL:0000202 ! auditory hair cell relationship: part_of UBERON:0001855 {source="MA-abduced"} ! cochlear duct of membranous labyrinth @@ -209322,6 +210572,7 @@ synonym: "basibranchial" EXACT [ZFA:0000170] synonym: "basibranchials" EXACT PLURAL [ZFA:0000170] synonym: "copula 1" RELATED [] synonym: "copula I" RELATED [AAO:0000686] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 {source="ZFA"} ! post-hyoid pharyngeal arch skeleton @@ -209343,6 +210594,7 @@ subset: pheno_slim synonym: "metaphysis of ulna" EXACT [FMA:33767] xref: FMA:33767 is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0001424 ! ulna relationship: part_of UBERON:0001010 {source="FMA"} ! diaphysis of ulna @@ -209357,6 +210609,7 @@ synonym: "diaphyseal end of humerus" EXACT [FMA:32830] synonym: "humeral metaphysis" EXACT [FMA:32830] xref: FMA:32830 is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000976 ! humerus relationship: part_of UBERON:0000976 ! humerus @@ -209371,6 +210624,7 @@ xref: EMAPA:37772 {source="MA:th"} xref: FMA:33135 xref: MA:0003106 is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0000979 ! tibia relationship: part_of UBERON:0000979 ! tibia @@ -209383,6 +210637,7 @@ subset: pheno_slim synonym: "radial metaphysis" EXACT [FMA:33789] xref: FMA:33789 is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0001423 ! radius bone relationship: part_of UBERON:0001423 ! radius bone @@ -209397,6 +210652,7 @@ synonym: "metacarpal bone diaphysis" EXACT [FMA:33804] synonym: "shaft of metacarpal" EXACT [FMA:33804] synonym: "shaft of metacarpal bone" EXACT [FMA:33804] xref: FMA:33804 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0002374 ! metacarpal bone @@ -209479,6 +210735,7 @@ def: "One of two openings in the uterine cervix." [http://orcid.org/0000-0002-66 synonym: "cervical opening" RELATED [] synonym: "uterine cervix opening" RELATED [] xref: FMA:20422 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000161 ! orifice @@ -209538,6 +210795,7 @@ synonym: "lumen of cervix of uterus" EXACT [FMA:17746] xref: BTO:0002249 xref: FMA:17746 xref: http://en.wikipedia.org/wiki/Canal_of_the_cervix +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0000002 ! uterine cervix @@ -209561,6 +210819,7 @@ synonym: "crus membranaceum commune ductuum semicircularium" EXACT LATIN [] xref: FMA:71881 xref: TAO:0005411 xref: ZFA:0005411 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0001856 ! semicircular duct @@ -209609,6 +210868,7 @@ xref: FMA:52894 xref: http://en.wikipedia.org/wiki/Frontal_process_of_maxilla xref: http://www.snomedbrowser.com/Codes/Details/368869008 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -209635,6 +210895,7 @@ synonym: "uterine space" EXACT [] xref: EMAPA:36273 xref: FMA:17745 xref: Uterine:cavity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002558 ! organ cavity intersection_of: UBERON:0002558 ! organ cavity intersection_of: part_of UBERON:0000995 ! uterus @@ -209701,6 +210962,7 @@ synonym: "metatarsal bone diaphysis" EXACT [FMA:33826] synonym: "metatarsal diaphysis" EXACT [] synonym: "shaft of metatarsal bone" EXACT [FMA:33826] xref: FMA:33826 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004769 ! diaphysis intersection_of: UBERON:0004769 ! diaphysis intersection_of: part_of UBERON:0001448 ! metatarsal bone @@ -209849,6 +211111,7 @@ name: dorsal cap of Kooy synonym: "dorsal cap of kooy" EXACT [NLXANAT:100307] xref: NLXANAT:100307 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] @@ -209861,6 +211124,7 @@ xref: BAMS:IOma xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=751 xref: NLXANAT:100309 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex [Term] @@ -209907,6 +211171,7 @@ synonym: "membrana fibroelastica laryngis" EXACT LATIN [http://www.medilexicon.c xref: FMA:55239 xref: http://www.snomedbrowser.com/Codes/Details/361942003 is_a: UBERON:0000094 {source="FMA"} ! membrane organ +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001737 ! larynx [Term] @@ -210044,6 +211309,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245503009 xref: NCIT:C32147 xref: UMLS:C1510944 {source="ncithesaurus:Aryteno-epiglottic_Fold"} is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx @@ -210101,7 +211367,6 @@ synonym: "gustatory papillae" RELATED PLURAL [] synonym: "taste papilla" EXACT [] synonym: "taste papillae" RELATED PLURAL [] xref: FMA:54822 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001726 ! papilla of tongue intersection_of: UBERON:0001726 ! papilla of tongue intersection_of: has_part UBERON:0001727 ! taste bud @@ -210211,6 +211476,7 @@ xref: FMA:52770 xref: http://www.snomedbrowser.com/Codes/Details/368921009 xref: MA:0002994 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone @@ -210365,6 +211631,7 @@ name: sciatic notch def: "Either of two notches on the dorsal border of the hip bone on each side that when closed off by ligaments form the corresponding sciatic foramina." [http://www.merriam-webster.com/medical/sciatic+notch] xref: http://www.snomedbrowser.com/Codes/Details/360956007 xref: Sciatic:notch +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001274 ! ischium @@ -210390,6 +211657,7 @@ xref: FMA:16914 xref: http://www.snomedbrowser.com/Codes/Details/182034009 xref: MA:0003053 xref: NCIT:C103818 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -210427,6 +211695,7 @@ synonym: "ischiopubic rami" RELATED [http://en.wikipedia.org/wiki/Ischiopubic_ra synonym: "rami of the pubis and ischium" RELATED [http://en.wikipedia.org/wiki/Ischiopubic_ramus] xref: FMA:43533 xref: Ischiopubic:ramus +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: has_part UBERON:0014439 ! inferior pubic ramus relationship: has_part UBERON:0014443 ! inferior ischial ramus @@ -210440,6 +211709,7 @@ synonym: "ramus ossis ischii" EXACT [FMA:17007] synonym: "ramusi ossis ischii" EXACT [FMA:TA] xref: FMA:17007 xref: http://www.snomedbrowser.com/Codes/Details/182043000 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001274 ! ischium @@ -210469,6 +211739,7 @@ name: pubic ramus subset: pheno_slim synonym: "ramus of pubis" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/182026003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ union_of: UBERON:0014438 ! superior pubic ramus union_of: UBERON:0014439 ! inferior pubic ramus @@ -210486,6 +211757,7 @@ synonym: "fossa acetabuli" EXACT LATIN [http://en.wikipedia.org/wiki/Acetabular_ xref: Acetabular:fossa xref: FMA:17269 xref: http://www.snomedbrowser.com/Codes/Details/289666003 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: continuous_with UBERON:0014446 ! acetabular notch relationship: part_of UBERON:0001272 ! innominate bone @@ -210497,6 +211769,7 @@ def: "The acetabulum presents below a deep notch, the acetabular notch, which is xref: Acetabular:notch xref: FMA:16944 xref: http://www.snomedbrowser.com/Codes/Details/289767000 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: conduit_for UBERON:0018411 ! ligament of hip joint relationship: part_of UBERON:0001272 ! innominate bone @@ -210754,6 +212027,7 @@ relationship: part_of UBERON:0003129 ! skull id: UBERON:0014466 name: subarachnoid fissure xref: FMA:75136 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000315 ! subarachnoid space @@ -210845,6 +212119,7 @@ id: UBERON:0014475 name: endostylar duct def: "A duct in ammocetes (larval lamprey) that is reputed to connect the endostylar lumen to the pharyngeal lumen. Resembles the thyroglossal duct." [http://www.ncbi.nlm.nih.gov/pubmed/15592682, https://github.com/obophenotype/uberon/issues/285] synonym: "duct of endostyle" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000025 ! tube intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0006870 ! endostyle @@ -210861,6 +212136,7 @@ synonym: "thoracic skeleton" EXACT [EHDAA2:0002013] xref: EHDAA2:0002013 xref: FMA:77169 xref: Thoracic:skeleton +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0000915 ! thoracic segment of trunk relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -210874,6 +212150,7 @@ synonym: "rib skeleton" RELATED [] synonym: "set of all ribs" RELATED [FMA:265719] xref: FMA:265719 xref: TAO:0002100 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system relationship: composed_primarily_of UBERON:0015019 ! rib endochondral element relationship: has_part UBERON:0003252 ! thoracic rib cage @@ -211555,6 +212832,7 @@ xref: BAMS:PAC xref: NLX:144210 xref: Periamygdaloid:cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex relationship: part_of UBERON:0006108 {source="NIFSTD"} ! corticomedial nuclear complex @@ -211566,6 +212844,7 @@ subset: non_informative synonym: "regional part of spinal cord central canal" EXACT HUMAN_PREFERRED [BIRNLEX:717] xref: BIRNLEX:717 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: subdivision_of UBERON:0002291 ! central canal of spinal cord relationship: part_of UBERON:0002291 ! central canal of spinal cord @@ -211969,6 +213248,8 @@ def: "A subdivision of a layer of the hippocampus (e.g. stratum moleculare) cove subset: non_informative synonym: "hippocampal field layer" EXACT [] is_a: UBERON:0000119 ! cell layer +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002305 ! layer of hippocampus [Term] @@ -212297,6 +213578,7 @@ xref: MBA:998 xref: NLX:144261 is_a: UBERON:0000481 {source="ABA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005403 {source="ABA"} ! ventral striatum [Term] @@ -212377,6 +213659,7 @@ xref: BIRNLEX:1427 xref: http://linkedlifedata.com/resource/umls/id/C0228629 xref: http://www.snomedbrowser.com/Codes/Details/367877009 xref: UMLS:C0228629 {source="BIRNLEX:1427"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014609 ! thoracic spinal cord dorsal horn @@ -212562,6 +213845,7 @@ xref: BIRNLEX:1714 xref: http://linkedlifedata.com/resource/umls/id/C0228612 xref: http://www.snomedbrowser.com/Codes/Details/174452008 xref: UMLS:C0228612 {source="BIRNLEX:1714"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014620 ! cervical spinal cord dorsal horn @@ -212592,6 +213876,7 @@ xref: FMA:75640 xref: http://linkedlifedata.com/resource/umls/id/C0458781 xref: http://www.snomedbrowser.com/Codes/Details/279799003 xref: UMLS:C0458781 {source="BIRNLEX:2522"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006723 ! cochlear modiolus @@ -212603,6 +213888,7 @@ xref: BIRNLEX:2556 xref: http://linkedlifedata.com/resource/umls/id/C0458766 xref: http://www.snomedbrowser.com/Codes/Details/279778001 xref: UMLS:C0458766 {source="BIRNLEX:2556"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal @@ -212614,6 +213900,7 @@ xref: BIRNLEX:2558 xref: http://linkedlifedata.com/resource/umls/id/C0458761 xref: http://www.snomedbrowser.com/Codes/Details/279772000 xref: UMLS:C0458761 {source="BIRNLEX:2558"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal @@ -212625,6 +213912,7 @@ xref: BIRNLEX:2559 xref: http://linkedlifedata.com/resource/umls/id/C0458768 xref: http://www.snomedbrowser.com/Codes/Details/279780007 xref: UMLS:C0458768 {source="BIRNLEX:2559"} +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006106 ! cochlear canal @@ -212671,6 +213959,7 @@ xref: BIRNLEX:811 xref: http://linkedlifedata.com/resource/umls/id/C0228647 xref: http://www.snomedbrowser.com/Codes/Details/314425003 xref: UMLS:C0228647 {source="BIRNLEX:811"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0014638 ! lumbar spinal cord dorsal horn @@ -212816,6 +214105,7 @@ synonym: "archeocerebellum" RELATED [BIRNLEX:904] synonym: "archicerebellum" EXACT [] synonym: "archicerebellum" RELATED [BIRNLEX:904] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: capable_of_part_of NBO:0000361 ! gait relationship: part_of UBERON:0002037 ! cerebellum @@ -212826,6 +214116,7 @@ def: "A phylogenetic subdivision of the cerebellum, the intermediate part, which synonym: "paleocerebellum" EXACT [] xref: http://en.wikipedia.org/wiki/Cerebellum is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -213258,6 +214549,7 @@ xref: FMA:49689 xref: http://en.wikipedia.org/wiki/Deep_auricular_artery xref: http://www.snomedbrowser.com/Codes/Details/147157007 is_a: UBERON:0009655 ! auricular artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0009655 ! auricular artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery @@ -213276,6 +214568,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/244211008 xref: NCIT:C32083 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013151 ! choroidal artery disjoint_from: UBERON:0014697 {source="lexical"} ! posterior choroidal artery relationship: branching_part_of UBERON:0001532 {source="FMA"} ! internal carotid artery @@ -213318,6 +214611,7 @@ def: "A vascular system that overlaps a umbilical cord and is part of a entire e xref: EHDAA2:0000478 xref: EMAPA:16370 xref: VHOG:0001396 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007798 ! vascular system relationship: part_of UBERON:0016887 ! entire extraembryonic component @@ -213375,6 +214669,7 @@ is_a: UBERON:0000490 {source="EHDAA2"} ! unilaminar epithelium is_a: UBERON:0003929 ! digestive tract epithelium is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0005911 ! endo-epithelium +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0006756 ! median lingual swelling relationship: develops_from UBERON:0013156 {source="EHDAA2"} ! 1st arch mandibular endoderm @@ -213563,6 +214858,7 @@ xref: http://en.wikipedia.org/wiki/Osteon xref: http://www.snomedbrowser.com/Codes/Details/361726004 xref: MESH:D006253 xref: NCIT:C32714 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001439 ! compact bone tissue relationship: part_of UBERON:0002481 ! bone tissue @@ -213577,6 +214873,7 @@ xref: FMA:224787 xref: Haversian:canal xref: http://www.snomedbrowser.com/Codes/Details/3336003 xref: NCIT:C32713 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0014730 ! osteon @@ -213602,6 +214899,7 @@ def: "A large expansion of the lateral wall of the telencephalon, located in the synonym: "dorsal ventricular ridge" EXACT [] synonym: "DVR" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:32524 ! Amniota relationship: part_of UBERON:0000203 ! pallium relationship: present_in_taxon NCBITaxon:8782 ! Aves @@ -213624,6 +214922,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=759 xref: http://en.wikipedia.org/wiki/Allocortex xref: NLX:143557 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -213651,6 +214950,7 @@ synonym: "periallocortex" EXACT [NeuroNames:2315] xref: DHBA:10313 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2315 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0014734 ! allocortex relationship: part_of UBERON:0000956 ! cerebral cortex @@ -213669,6 +214969,7 @@ synonym: "MP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: TAO:0000536 xref: ZFA:0000536 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0014741 {source="lexical"} ! lateral pallium relationship: part_of UBERON:0000203 ! pallium @@ -213684,6 +214985,7 @@ synonym: "DP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: TAO:0000506 xref: ZFA:0000506 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -213702,6 +215004,7 @@ xref: DMBA:15956 xref: TAO:0000391 xref: ZFA:0000391 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -213717,6 +215020,7 @@ id: UBERON:0014751 name: P1 area of pallium (Myxiniformes) def: "Most superficial of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -213725,6 +215029,7 @@ id: UBERON:0014752 name: P2 area of pallium (Myxiniformes) def: "Area directly deep to the P1 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014751 ! P1 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -213734,6 +215039,7 @@ id: UBERON:0014753 name: P3 area of pallium (Myxiniformes) def: "Area directly deep to the P2 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014752 ! P2 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -213743,6 +215049,7 @@ id: UBERON:0014754 name: P4 area of pallium (Myxiniformes) def: "Area directly deep to the P3 area of pallium in hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014753 ! P3 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -213752,6 +215059,7 @@ id: UBERON:0014755 name: P5 area of pallium (Myxiniformes) def: "Most deep of the areas of the pallium in the enlarged evaginated telencephalon of hagfishes." [ISBN:0471888893] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: immediately_deep_to UBERON:0014754 ! P4 area of pallium (Myxiniformes) relationship: only_in_taxon NCBITaxon:7762 ! Myxinidae relationship: part_of UBERON:0000203 ! pallium @@ -213770,6 +215078,7 @@ name: hyperpallium apicale synonym: "HA" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] xref: BTO:0003402 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -213778,6 +215087,7 @@ id: UBERON:0014758 name: interstitial part of hyperpallium apicale synonym: "IHA" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23027930] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0014757 ! hyperpallium apicale @@ -213788,6 +215098,7 @@ def: "The major telecephalic thalamorecipient zone of the tectofugal visual syst synonym: "core region of ectostriatum" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/14681937] synonym: "E" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/16041718] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:8782 ! Aves relationship: part_of UBERON:0000203 ! pallium @@ -213901,6 +215212,7 @@ xref: EMAPA:17703 xref: http://en.wikipedia.org/wiki/Crus_of_diaphragm xref: http://www.snomedbrowser.com/Codes/Details/244668003 xref: VHOG:0001546 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000063 ! organ subunit relationship: attaches_to UBERON:0001130 ! vertebral column @@ -213993,6 +215305,7 @@ xref: FMA:49940 xref: http://en.wikipedia.org/wiki/Lateral_palpebral_arteries xref: http://www.snomedbrowser.com/Codes/Details/369323008 is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014770 ! palpebral artery disjoint_from: UBERON:0014773 {source="lexical"} ! medial palpebral artery relationship: branching_part_of UBERON:0001622 {source="FMA"} ! lacrimal artery @@ -214012,6 +215325,7 @@ xref: FMA:50012 xref: http://en.wikipedia.org/wiki/Medial_palpebral_arteries xref: http://www.snomedbrowser.com/Codes/Details/369331003 is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014770 ! palpebral artery relationship: branching_part_of UBERON:0001619 {source="FMA"} ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery @@ -214078,6 +215392,7 @@ name: liver reticuloendothelial system def: "A reticuloendothelial system that is part of a liver." [OBOL:automatic] xref: BTO:0000831 is_a: UBERON:0000363 ! reticuloendothelial system +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000363 ! reticuloendothelial system intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver @@ -214091,6 +215406,7 @@ synonym: "aponeurosis palatina" EXACT [http://en.wikipedia.org/wiki/Palatine_apo xref: FMA:49429 xref: Palatine:aponeurosis is_a: UBERON:0006614 ! aponeurosis +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0006614 ! aponeurosis intersection_of: part_of UBERON:0001733 ! soft palate relationship: part_of UBERON:0001733 ! soft palate @@ -214099,6 +215415,7 @@ relationship: part_of UBERON:0001733 ! soft palate id: UBERON:0014781 name: stomodeal ectoderm xref: BTO:0004224 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0000924 ! ectoderm @@ -214203,6 +215520,7 @@ xref: EMAPA:18274 xref: FMA:54813 xref: http://www.snomedbrowser.com/Codes/Details/368727001 xref: Lingual:septum +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0001723 ! tongue @@ -214343,6 +215661,7 @@ name: nuchal line attachment site def: "Any of the four curved lines on the external surface of the occipital bone that serves as an attachment site for a muscle." [http://en.wikipedia.org/wiki/Nuchal_lines, http://orcid.org/0000-0002-6601-2165] synonym: "nuchal line" RELATED [http://en.wikipedia.org/wiki/Nuchal_lines] xref: Nuchal:lines +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200047 ! attachment site relationship: part_of UBERON:0001676 ! occipital bone @@ -214999,6 +216318,7 @@ id: UBERON:0014898 name: lamina terminalis of ischium def: "In those cases in which the interilial region is broadly expanded and the pubis is extremely reduced, the anterior margin of the ischium forms an expanded area." [AAO:0000881, AAO:LAP] xref: AAO:0000881 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001274 {source="AAO"} ! ischium @@ -215099,6 +216419,7 @@ def: "The pallial region located next to the pallium-subpallium boundary." [http synonym: "VP" BROAD ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/23375746] xref: DMBA:15904 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: adjacent_to UBERON:0000204 ! ventral part of telencephalon relationship: part_of UBERON:0000203 ! pallium @@ -215145,6 +216466,7 @@ id: UBERON:0014916 name: velar vocal fold def: "On of a pair of medial protrusions of the intra-pharyngeal ostium (an oval opening within the soft palate that connects the oral and nasal portions of the pharynx), used in vocalization in Koalas." [https://doi.org/10.1016/j.cub.2013.10.069] comment: Muscle notes: Because the larynx is attached to the caudal end of the pharynx where the IPO is situated, laryngeal retraction brought about by the sternothyroid muscle will automatically put tension on the rostro-caudally oriented velar vocal folds, and could also induce length changes of the folds. Contractions of the palatopharyngeal muscles may also influence the length and shape of the velar vocal folds directly (inducing width changes of the IPO). +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0034681 ! vocal organ relationship: capable_of_part_of GO:0071625 ! vocalization behavior @@ -215174,6 +216496,7 @@ xref: EMAPA:37947 {source="MA:th"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1802 xref: MBA:886 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0013531 ! retrosplenial region [Term] @@ -215190,6 +216513,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225983 xref: http://www.snomedbrowser.com/Codes/Details/342298001 xref: NCIT:C83196 xref: Virchow-Robin:space +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0001981 ! blood vessel @@ -215246,7 +216570,6 @@ synonym: "MZ" BROAD ABBREVIATION [MP:0000792] xref: EMAPA:17546 xref: EMAPA:32713 xref: PBA:294021774 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004062 ! neural tube marginal layer relationship: part_of UBERON:0010403 ! brain marginal zone @@ -215258,7 +216581,6 @@ synonym: "cerebral cortex ventricular zone" RELATED [EMAPA:32707] xref: EMAPA:17547 xref: EMAPA:32707 xref: MA:0003189 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004060 ! neural tube ventricular layer @@ -215270,13 +216592,13 @@ synonym: "SZ" BROAD ABBREVIATION [BRAINSPAN:BRAINSPAN] xref: EMAPA:32704 xref: MA:0003188 xref: PBA:294021970 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014950 ! layer of developing cerebral cortex relationship: develops_from UBERON:0004040 ! cortical intermediate zone [Term] id: UBERON:0014950 name: layer of developing cerebral cortex +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005423 ! developing anatomical structure relationship: part_of UBERON:0000956 {source="EMAPA"} ! cerebral cortex @@ -215291,6 +216613,7 @@ synonym: "proisocortex" RELATED [NeuroNames:2311] synonym: "proisocortical belt" RELATED [NeuroNames:2311] xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2311 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001950 ! neocortex [Term] @@ -215468,6 +216791,7 @@ name: supraoccipital endochondral element def: "A supraoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "supraoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0004747 ! supraoccipital bone union_of: UBERON:0011162 ! supraoccipital cartilage element @@ -215516,6 +216840,7 @@ name: rib endochondral element def: "A rib bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "rib skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0002228 ! rib union_of: UBERON:0006288 ! rib cartilage element @@ -215951,6 +217276,7 @@ name: basioccipital endochondral element def: "A basioccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "basioccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001692 ! basioccipital bone union_of: UBERON:0006209 ! basioccipital cartilage element @@ -215997,6 +217323,7 @@ name: exoccipital endochondral element def: "An exoccipital bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "exoccipital skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001693 ! exoccipital bone union_of: UBERON:0006228 ! exoccipital pre-cartilage condensation @@ -216037,6 +217364,7 @@ name: iliac endochondral element def: "An iliac bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "iliac skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001273 ! ilium @@ -216050,6 +217378,7 @@ name: pubic endochondral element def: "A pubic bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "pubic skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001275 ! pubis @@ -216063,6 +217392,7 @@ name: ischial endochondral element def: "An ischial bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "ischial skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001274 ! ischium @@ -216088,6 +217418,7 @@ name: alisphenoid endochondral element def: "An alisphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "alisphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0006721 ! alisphenoid bone union_of: UBERON:0010732 ! alisphenoid pre-cartilage condensation @@ -216100,6 +217431,7 @@ name: orbitosphenoid endochondral element def: "An orbitosphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "orbitosphenoid skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0002478 ! orbitosphenoid union_of: UBERON:0005687 ! orbitosphenoid cartilage element @@ -216113,6 +217445,7 @@ name: sphenoid endochondral element def: "A sphenoid bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "sphenoid element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element union_of: UBERON:0001677 ! sphenoid bone union_of: UBERON:0009191 ! sphenoid bone pre-cartilage condensation @@ -216125,6 +217458,7 @@ name: limb endochondral element def: "A limb bone or its cartilage or pre-cartilage precursor." [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone endochondral element" EXACT [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] synonym: "limb bone skeletal element" BROAD [https://github.com/obophenotype/uberon/wiki/Modeling-endochondral-elements-Design-Pattern] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010363 ! endochondral element intersection_of: UBERON:0010363 ! endochondral element intersection_of: part_of UBERON:0002101 ! limb @@ -216629,13 +217963,9 @@ xref: FMA:61975 xref: http://www.snomedbrowser.com/Codes/Details/361483008 xref: Lamina:terminalis xref: VHOG:0001547 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0014532 {source="FMA"} ! white matter lamina of cerebral hemisphere -relationship: develops_from UBERON:0002346 ! neurectoderm relationship: develops_from UBERON:0005078 ! lamina terminalis of neural tube relationship: develops_from UBERON:0006222 ! future diencephalon -relationship: develops_from UBERON:0006238 ! future brain -relationship: develops_from UBERON:0006240 ! future forebrain relationship: immediate_transformation_of UBERON:0005078 ! lamina terminalis of neural tube relationship: part_of UBERON:0002437 {source="FMA"} ! cerebral hemisphere white matter @@ -216752,6 +218082,7 @@ synonym: "pericardial adipose tissue" EXACT [] xref: FMA:9871 xref: http://www.snomedbrowser.com/Codes/Details/42267001 is_a: UBERON:0003837 ! thoracic segment connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0035814 ! pericardial fat intersection_of: UBERON:0001013 ! adipose tissue intersection_of: adjacent_to UBERON:0002348 ! epicardium @@ -216769,6 +218100,7 @@ name: connective tissue of prostate gland def: "A portion of connective tissue that is part of a prostate gland." [OBOL:automatic] synonym: "connective tissue of prostate" EXACT [FMA:74165] xref: FMA:74165 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0011822 {source="FMA"} ! dense irregular connective tissue intersection_of: UBERON:0002384 ! connective tissue @@ -216834,6 +218166,7 @@ synonym: "gallbladder infundibulum" EXACT [FMA:76652] synonym: "infundibulum vesicae biliaris" EXACT LATIN [MP:0009465] xref: FMA:76652 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: contributes_to_morphology_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder @@ -216843,6 +218176,7 @@ name: falciform fat def: "A large fat pad that is located at the base of the abdominal wall, in the falciform ligament of the liver." [MURDOCH:768] synonym: "falciform fat depot" RELATED [] synonym: "falciform ligament fat pad" RELATED [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003427 ! abdominal fat pad is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0015143 ! mesenteric fat pad @@ -216856,6 +218190,7 @@ name: mesenteric fat pad def: "Encapsulated adipose tissue associated with the mesentery." [MP:0008903] synonym: "mesenteric fat depot" EXACT [MP:0008903] is_a: UBERON:0003916 ! fat pad +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0002095 ! mesentery relationship: part_of UBERON:0002095 ! mesentery @@ -216950,6 +218285,7 @@ synonym: "duct of Harder's gland" EXACT [] synonym: "duct of Harderian gland" EXACT [] synonym: "Harderian duct" RELATED [] is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0004187 ! Harderian gland relationship: part_of UBERON:0004187 ! Harderian gland @@ -216995,6 +218331,7 @@ synonym: "subbrillar space" NARROW [http://www.ncbi.nlm.nih.gov/pubmed/7559104, synonym: "subconjunctival space" EXACT [] xref: FMA:59083 xref: http://www.snomedbrowser.com/Codes/Details/280957009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001811 ! conjunctiva @@ -217009,6 +218346,7 @@ def: "The two terminal branches of the ophthalmic artery in humans are the dorsa xref: FMA:51956 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery @@ -217023,6 +218361,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/146753008 xref: Zygomatico-orbital:artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery relationship: part_of UBERON:0001614 ! superficial temporal artery @@ -217033,6 +218372,7 @@ comment: The blood supply to the (Harderian) gland has been reported in greatest synonym: "ophthalmotemporal artery" RELATED [] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery relationship: supplies UBERON:0004187 {source="http://www.ncbi.nlm.nih.gov/pubmed/7559104"} ! Harderian gland @@ -217050,6 +218390,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/369330002 xref: Supraorbital:artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001619 ! ophthalmic artery relationship: part_of UBERON:0001619 ! ophthalmic artery relationship: supplies UBERON:0001604 ! levator palpebrae superioris @@ -217074,6 +218415,7 @@ xref: http://en.wikipedia.org/wiki/Inferior_branch_of_oculomotor_nerve xref: http://www.snomedbrowser.com/Codes/Details/280206003 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region intersection_of: UBERON:0001021 ! nerve intersection_of: branching_part_of UBERON:0001643 ! oculomotor nerve @@ -217101,6 +218443,7 @@ xref: http://en.wikipedia.org/wiki/Superior_branch_of_oculomotor_nerve xref: http://www.snomedbrowser.com/Codes/Details/280205004 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011779 ! nerve of head region intersection_of: UBERON:0001021 ! nerve intersection_of: branching_part_of UBERON:0001643 ! oculomotor nerve @@ -217246,6 +218589,7 @@ synonym: "somite boundary" RELATED [ZFA:0001462] xref: TAO:0001462 xref: XAO:0004074 xref: ZFA:0001462 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: adjacent_to UBERON:0003059 ! presomitic mesoderm @@ -217260,6 +218604,7 @@ def: "Epithelium located in the intersomitic region." [XAO:0004077, XAO:EJS] synonym: "intersomitic epithelium" EXACT [XAO:0004077] synonym: "intersomitic membrane" EXACT [XAO:0004077] xref: XAO:0004077 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0015178 ! somite border @@ -217276,6 +218621,7 @@ synonym: "talus neck" EXACT [FMA:33636] xref: FMA:33636 xref: http://en.wikipedia.org/wiki/Neck_of_talus xref: http://www.snomedbrowser.com/Codes/Details/182104001 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0002395 ! talus @@ -217296,6 +218642,7 @@ xref: FMA:55627 xref: http://www.snomedbrowser.com/Codes/Details/28638008 xref: NCIT:C32346 is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001091 ! calcareous tooth @@ -217368,6 +218715,7 @@ name: arcuate ligament def: "A ligament that is part of a diaphragm." [OBOL:automatic] xref: EMAPA:19236 xref: FMA:58280 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005181 ! thoracic segment organ intersection_of: UBERON:0000211 ! ligament @@ -217388,6 +218736,7 @@ name: nasal meatus xref: EMAPA:18593 xref: FMA:53146 xref: http://www.snomedbrowser.com/Codes/Details/310212002 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000004 {source="EMAPA"} ! nose @@ -217438,6 +218787,8 @@ name: interventricular foramen intermedium def: "An anatomical conduit that is part of a ventricular septum intermedium." [OBOL:automatic] synonym: "interventricular ostium intermedium" EXACT LATIN [] is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004153 ! ventricular septum intermedium relationship: part_of UBERON:0004153 ! ventricular septum intermedium @@ -217449,6 +218800,7 @@ def: "An anatomical conduit that is part of a atrial septum intermedium." [OBOL: synonym: "interatrial ostium intermedium" EXACT LATIN [] synonym: "ostium intermedium" RELATED [] is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0004159 ! atrial septum intermedium relationship: part_of UBERON:0004159 ! atrial septum intermedium @@ -217504,6 +218856,7 @@ synonym: "adult heart" NARROW SENSU [FBbt:00003154, NCBITaxon:50557] synonym: "embryonic/larval heart" NARROW SENSU [FBbt:00001675, NCBITaxon:50557] synonym: "heart" RELATED SENSU [NCBITaxon:50557] xref: FBbt:00003154 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007100 ! primary circulatory organ relationship: part_of UBERON:0015231 {source="FBbt"} ! circulatory system dorsal vessel @@ -217556,6 +218909,7 @@ name: pineal complex def: "A cluster in the epithalamus that consists of the pineal body and any associated structures, such as the parapineal gland or the parietal organ. The complex is poorly developed in mammals." [http://orcid.org/0000-0002-6601-2165] xref: TAO:0001359 xref: ZFA:0001359 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: dubious_for_taxon NCBITaxon:40674 ! Mammalia relationship: part_of UBERON:0001899 {source="ZFA"} ! epithalamus @@ -217567,6 +218921,7 @@ synonym: "parapineal gland" RELATED [] xref: TAO:0001360 xref: ZFA:0001360 is_a: UBERON:0003103 {source="ZFA"} ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: in_lateral_side_of UBERON:0015238 {gci_relation="part_of", gci_filler="NCBITaxon:117569"} ! pineal complex relationship: in_left_side_of UBERON:0015238 {gci_relation="part_of", gci_filler="NCBITaxon:7954"} ! pineal complex relationship: part_of UBERON:0015238 {source="ZFA"} ! pineal complex @@ -217586,6 +218941,7 @@ xref: EMAPA:18999 xref: FMA:27975 xref: http://www.snomedbrowser.com/Codes/Details/362252008 xref: MA:0003243 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013515 {source="cjm"} ! subdivision of oviduct relationship: part_of UBERON:0000996 {source="EMAPA"} ! vagina @@ -217609,6 +218965,7 @@ name: septal olfactory organ def: "A spatially segregated cluster of sensory cells in the nasal cavity." [http://www.ncbi.nlm.nih.gov/books/NBK55971/] xref: EMAPA:35764 xref: MA:0001327 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010001 ! cell cluster organ relationship: adjacent_to UBERON:0001706 {modified_from="MA"} ! nasal septum relationship: located_in UBERON:0001997 ! olfactory epithelium @@ -217622,6 +218979,7 @@ def: "A small island of olfactory neuroepithelium lying bilaterally at the ventr synonym: "SO of Masera" RELATED [NCBIBook:NBK55971] xref: EMAPA:35766 xref: MA:0002890 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015245 {source="MA"} ! septal olfactory organ relationship: has_part CL:0000848 ! microvillous olfactory receptor neuron relationship: has_part UBERON:0002232 ! olfactory gland @@ -217639,6 +218997,7 @@ xref: FMA:7464 xref: http://www.snomedbrowser.com/Codes/Details/361954003 xref: MA:0003114 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004119 ! endoderm-derived structure relationship: connects UBERON:0002182 ! main bronchus relationship: connects UBERON:0003126 ! trachea relationship: part_of UBERON:0003126 {source="MA"} ! trachea @@ -217746,6 +219105,7 @@ def: "A mesenchyme that is part of a urethra." [OBOL:automatic] xref: EMAPA:37786 {source="MA:th"} xref: MA:0002648 is_a: UBERON:0003104 ! mesenchyme +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 ! urethra @@ -217759,6 +219119,7 @@ synonym: "valve or ureter" EXACT [] xref: EMAPA:37781 {source="MA:th"} xref: MA:0002658 is_a: UBERON:0003978 ! valve +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0003978 ! valve intersection_of: part_of UBERON:0000056 ! ureter relationship: capable_of GO:0035809 ! regulation of urine volume @@ -217835,6 +219196,7 @@ name: subcutaneous lymph node def: "A lymph node that is part of a hypodermis." [OBOL:automatic] xref: MA:0003028 is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0002072 ! hypodermis relationship: part_of UBERON:0002072 ! hypodermis @@ -217902,6 +219264,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/245341003 xref: MA:0003068 xref: NCIT:C77651 is_a: UBERON:0000029 {source="MA"} ! lymph node +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005178 ! thoracic cavity element is_a: UBERON:0007644 ! thoracic lymph node relationship: located_in UBERON:0003728 ! mediastinum @@ -217959,6 +219322,7 @@ xref: FMA:20432 xref: http://www.snomedbrowser.com/Codes/Details/361710000 xref: MA:0003093 is_a: UBERON:0000014 ! zone of skin +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001300 ! scrotum @@ -218119,6 +219483,7 @@ xref: NCIT:C32675 xref: NeuroNamesCNID:176 xref: NLX:144462 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: in_anterior_side_of UBERON:0002336 ! corpus callosum relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002336 ! corpus callosum @@ -218220,6 +219585,7 @@ def: "A smooth muscle tissue that is part of a inferior eyelid tarsus." [OBOL:au xref: FMA:49059 xref: http://www.snomedbrowser.com/Codes/Details/368783000 is_a: UBERON:0003386 ! smooth muscle of eye +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0004774 ! inferior eyelid tarsus relationship: part_of UBERON:0004774 ! inferior eyelid tarsus @@ -218290,6 +219656,8 @@ name: duct of olfactory gland def: "A duct that is part of a olfactory gland." [OBOL:automatic] synonym: "olfactory gland duct" EXACT [] is_a: UBERON:0000058 ! duct +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002232 ! olfactory gland relationship: located_in UBERON:0005386 ! olfactory segment of nasal mucosa @@ -218301,6 +219669,8 @@ name: acinus of olfactory gland def: "An acinus that is part of a olfactory gland." [OBOL:automatic] synonym: "acinar part of olfactory gland" EXACT [] synonym: "olfactory gland acinus" EXACT [] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011858 ! acinus of exocrine gland intersection_of: UBERON:0009842 ! glandular acinus intersection_of: part_of UBERON:0002232 ! olfactory gland @@ -218328,6 +219698,7 @@ def: "Any anatomical conduit which is part of the upper respiratory tract." [htt synonym: "respiratory conduit" RELATED [FMA:265132] xref: FMA:265132 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0001557 ! upper respiratory tract relationship: part_of UBERON:0001557 ! upper respiratory tract @@ -218337,6 +219708,7 @@ id: UBERON:0015788 name: olfactory apparatus chamber def: "An anatomical chamber that is part of the olfactory apparatus, consisting of cavity walls (nasal epithelium and mucosal layers) and the space bounded anteriorly by the nares and posteriorly by the choanae, when these structures are present." [http://orcid.org/0000-0002-6601-2165] xref: FMA:265136 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0015787 ! upper respiratory conduit relationship: part_of UBERON:0000004 ! nose @@ -218442,6 +219814,7 @@ def: "A blood vessel that is part of a liver." [OBOL:automatic] synonym: "hepatic blood vessel" RELATED [EMAPA:35498] xref: EMAPA:35498 xref: MA:0003137 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003497 ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002107 ! liver @@ -218778,6 +220151,7 @@ name: interpedicular line def: "An anatomical line that connects two successive vertebral pedicles. The length of this line is known as the interpedicular distance." [http://orcid.org/0000-0002-6601-2165] synonym: "inter-vertebral-pedicle line" EXACT [] synonym: "interpedicular distance" RELATED [HP:0008450] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line intersection_of: UBERON:0006800 ! anatomical line intersection_of: connects UBERON:0001078 {minCardinality="2", maxCardinality="2"} ! pedicle of vertebra @@ -218790,6 +220164,7 @@ name: ventral ectodermal ridge def: "A thickening of the surface ectoderm on the ventral side of the embryonic tail which resembles the apical ectodermal ridge of the limb bud." [http://www.ncbi.nlm.nih.gov/pubmed/7486014] synonym: "VER" RELATED ABBREVIATION [http://www.ncbi.nlm.nih.gov/pubmed/7486014] xref: EMAPA:36491 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000076 ! external ectoderm relationship: part_of UBERON:0002533 ! post-anal tail bud @@ -219059,6 +220434,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0229317 xref: http://www.snomedbrowser.com/Codes/Details/362545007 xref: NCIT:C32420 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006203 {source="FMA"} ! conchal part of pinna [Term] @@ -219071,6 +220447,7 @@ xref: FMA:60128 xref: http://www.snomedbrowser.com/Codes/Details/300732009 xref: NCIT:C33495 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001705 {source="FMA"} ! nail [Term] @@ -219413,6 +220790,7 @@ xref: FMA:19627 xref: http://en.wikipedia.org/wiki/Corona_of_glans_penis xref: http://www.snomedbrowser.com/Codes/Details/362274002 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis @@ -219423,6 +220801,7 @@ subset: pheno_slim synonym: "glans penile base" EXACT [FMA:19649] xref: FMA:19649 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0001299 {source="FMA"} ! glans penis @@ -219595,7 +220974,9 @@ synonym: "glabellar surface of frontal bone" EXACT [FMA:57136] xref: FMA:52851 xref: FMA:57136 xref: http://www.snomedbrowser.com/Codes/Details/137561005 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005913 ! zone of bone organ intersection_of: connects UBERON:0011576 {minCardinality="2", maxCardinality="2"} ! supraorbital ridge relationship: connects UBERON:0011576 ! supraorbital ridge @@ -219717,6 +221098,7 @@ synonym: "esophageal hiatus of diaphragm" EXACT [FMA:58289] synonym: "oesophageal aperture" EXACT [FMA:58289] synonym: "oesophageal hiatus" EXACT [FMA:58289] xref: FMA:58289 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 ! orifice intersection_of: UBERON:0000161 ! orifice intersection_of: conduit_for UBERON:0001043 ! esophagus @@ -219760,6 +221142,7 @@ synonym: "nasal ridge" RELATED [HP:0011119] xref: FMA:59517 xref: http://www.snomedbrowser.com/Codes/Details/368114008 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0007827 {source="FMA"} ! external nose [Term] @@ -219848,6 +221231,7 @@ synonym: "hepatic stroma" EXACT [FMA:17553] synonym: "stroma of liver" EXACT [FMA:17553] xref: FMA:17553 is_a: UBERON:0003891 ! stroma +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003891 ! stroma intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver @@ -219868,6 +221252,7 @@ xref: FMA:15813 xref: http://en.wikipedia.org/wiki/Fibrous_capsule_of_Glisson xref: http://www.snomedbrowser.com/Codes/Details/362185005 is_a: UBERON:0003893 ! capsule +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0003893 ! capsule intersection_of: bounding_layer_of UBERON:0002107 ! liver relationship: bounding_layer_of UBERON:0002107 ! liver @@ -219890,6 +221275,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C1305372 xref: MA:0003078 xref: NCIT:C32232 is_a: UBERON:0000029 ! lymph node +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus @@ -219903,6 +221289,7 @@ synonym: "plaque" RELATED [http://orcid.org/0000-0002-6601-2165] xref: BTO:0000338 xref: Dental:plaque xref: MESH:A12.300.300 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000463 ! organism substance relationship: adjacent_to UBERON:0001091 {source="BTO"} ! calcareous tooth relationship: part_of UBERON:0000165 ! mouth @@ -219969,6 +221356,7 @@ def: "Skeletal element that functionally replaces the notochord[VSAP,modified]." synonym: "centrum" BROAD [VSAO:0000183] synonym: "centrum of vertebra" EXACT [] xref: VSAO:0000183 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 {source="VSAO"} ! skeletal element property_value: dc-contributor https://github.com/cmungall relationship: part_of UBERON:0010913 {source="VSAO"} ! vertebral element @@ -219982,6 +221370,7 @@ synonym: "foramen spinosum" EXACT LATIN [http://en.wikipedia.org/wiki/Foramen_sp xref: FMA:53156 xref: Foramen:spinosum xref: http://www.snomedbrowser.com/Codes/Details/369440000 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0036143 ! meningeal branch of mandibular nerve @@ -220031,6 +221420,7 @@ def: "An epicondyle that is part of a humerus." [OBOL:automatic] xref: FMA:321693 xref: http://www.snomedbrowser.com/Codes/Details/272693008 xref: NCIT:C114187 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009978 ! epicondyle intersection_of: UBERON:0009978 ! epicondyle @@ -220098,6 +221488,7 @@ synonym: "lumen of fundus of stomach" EXACT [FMA:17077] synonym: "lumen of stomach fundus" EXACT [] xref: EMAPA:18382 xref: FMA:17077 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001160 ! fundus of stomach @@ -220112,6 +221503,7 @@ xref: EMAPA:31868 xref: FMA:19930 xref: http://www.snomedbrowser.com/Codes/Details/368065003 xref: Umbilical:ring +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000161 {source="FMA"} ! orifice relationship: part_of UBERON:0000478 {source="EMAPA"} ! extraembryonic structure relationship: surrounds UBERON:0007118 ! umbilicus @@ -220126,6 +221518,7 @@ synonym: "Müllerian tubercle" EXACT [http://orcid.org/0000-0002-6601-2165] xref: EMAPA:18328 xref: FMA:72175 xref: MA:0003239 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: connects UBERON:0003890 ! Mullerian duct relationship: part_of UBERON:0000164 ! primitive urogenital sinus @@ -220188,6 +221581,7 @@ synonym: "doudenal lumen" EXACT [FMA:FMA] synonym: "duodenal lumen" EXACT [FMA:FMA] xref: EMAPA:19080 xref: FMA:14589 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0002114 ! duodenum @@ -220230,6 +221624,7 @@ synonym: "muscle layer of prostatic urethra" EXACT [FMA:FMA] synonym: "muscular coat of prostatic urethra" EXACT [FMA:FMA] xref: EMAPA:30956 xref: FMA:19699 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat intersection_of: part_of UBERON:0001335 ! prostatic urethra @@ -220256,6 +221651,7 @@ synonym: "jejunal lumen" EXACT [FMA:FMA] synonym: "jejunum lumen" EXACT [FMA:FMA] xref: EMAPA:18729 xref: FMA:14590 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: part_of UBERON:0002115 ! jejunum @@ -220311,6 +221707,7 @@ synonym: "muscular layer of spongy urethra" EXACT [FMA:FMA] synonym: "tunica muscularis urethrae spongiosa" EXACT LATIN [FMA:19701, FMA:TA] xref: EMAPA:30950 xref: FMA:19701 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0006660 ! muscular coat intersection_of: UBERON:0006660 ! muscular coat @@ -220375,6 +221772,8 @@ xref: FMA:61823 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1210 xref: http://www.snomedbrowser.com/Codes/Details/272632001 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: fma_set_term FMA:77800 relationship: part_of UBERON:0001869 ! cerebral hemisphere @@ -220668,6 +222067,7 @@ id: UBERON:0016565 name: cerebral blood vessel def: "A blood vessel that is part of a cerebellum." [OBOL:automatic] is_a: UBERON:0003499 ! brain blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002037 ! cerebellum @@ -220689,6 +222089,7 @@ comment: See https://sourceforge.net/p/obo/zebrafish-anatomy-zfa-term-requests/1 synonym: "otoconial-statoconial membrane" EXACT [ISBN:1565939948] synonym: "otolith membrane" NARROW [] xref: FMA:75570 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="FMA"} ! acellular membrane relationship: bounding_layer_of UBERON:0002518 {source="Wikipedia"} ! otolith organ relationship: part_of UBERON:0001862 {source="MA-abduced"} ! vestibular labyrinth @@ -220699,6 +222100,7 @@ id: UBERON:0016568 name: gelatinous layer of statoconial membrane xref: FMA:75588 is_a: UBERON:0000476 {source="FMA"} ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0016567 {source="FMA"} ! statoconial membrane [Term] @@ -220706,6 +222108,7 @@ id: UBERON:0016569 name: subcupular meshwork of statoconial membrane def: "An acellular membrane in the inner ear that is part of the statoconial membrane and consists of long branching filaments cross-bridged to one another. The filaments are continuous with those of the otolithic membrane on one side and with the surface of the epithelium on the other." [ISBN:1565939948] is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: adjacent_to UBERON:0000483 ! epithelium intersection_of: adjacent_to UBERON:0002519 ! otolithic part of statoconial membrane @@ -220936,6 +222339,7 @@ relationship: part_of UBERON:0016618 ! baleen feeding system id: UBERON:0016621 name: lunge feeding organ def: "A fibrous capsule located between the jaws of rorqual whales that contains a gelatinous substance and papillae bearing mechanorecaptors." [http://www.ncbi.nlm.nih.gov/pubmed/22622577] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000020 ! sense organ is_a: UBERON:0013765 ! digestive system element relationship: has_part UBERON:0016630 ! neurovascular bundle @@ -220946,6 +222350,7 @@ relationship: part_of UBERON:0016618 ! baleen feeding system [Term] id: UBERON:0016622 name: lunge feeding organ papilla +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:2001995 ! papilla intersection_of: UBERON:2001995 ! papilla intersection_of: part_of UBERON:0016621 ! lunge feeding organ @@ -220963,6 +222368,7 @@ relationship: part_of UBERON:0016618 ! baleen feeding system id: UBERON:0016628 name: stem of Y-shaped fibrocartilage skeleton of ventral pouch synonym: "YSF stem" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch @@ -220970,6 +222376,7 @@ relationship: part_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventr id: UBERON:0016629 name: branch of Y-shaped fibrocartilage skeleton of ventral pouch synonym: "YSF branch" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010912 ! subdivision of skeleton is_a: UBERON:0015212 ! lateral structure relationship: in_lateral_side_of UBERON:0016619 ! Y-shaped fibrocartilage skeleton of ventral pouch @@ -220982,6 +222389,7 @@ def: "A body structure consisting of nerves traveling together with arteries, ve xref: FMA:32419 xref: http://linkedlifedata.com/resource/umls/id/C0824497 xref: NCIT:C74603 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034921 ! multi organ part structure relationship: has_part UBERON:0001021 ! nerve relationship: has_part UBERON:0002049 ! vasculature @@ -221010,6 +222418,7 @@ synonym: "isthmus of uterine tube" RELATED [FMA:18306] synonym: "isthmus tubae uterinae" EXACT LATIN [FMA:18306, FMA:TA] synonym: "uterine tube isthmus" RELATED [FMA:18306] xref: FMA:18306 +is_a: UBERON:0003889 ! fallopian tube is_a: UBERON:0013515 {source="FMA"} ! subdivision of oviduct relationship: part_of UBERON:0003889 {source="FMA"} ! fallopian tube @@ -221059,6 +222468,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/90928005 xref: MBA:993 xref: Premotor:cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 ! cerebral cortex [Term] @@ -221084,6 +222494,7 @@ xref: FMA:224858 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3176 xref: http://en.wikipedia.org/wiki/Supplementary_motor_area is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000956 ! cerebral cortex @@ -221291,6 +222702,7 @@ def: "The dorsal region of the optic cup that gives rise to the dorsal part of t synonym: "dorsal optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "dorsal region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: in_dorsal_side_of UBERON:0003072 ! optic cup relationship: in_dorsal_side_of UBERON:0003072 ! optic cup @@ -221304,6 +222716,7 @@ comment: optic fissure, hyaloid artery, pecten synonym: "ventral optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] synonym: "ventral region of optic cup" EXACT [http://orcid.org/0000-0002-6601-2165] is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: in_ventral_side_of UBERON:0003072 ! optic cup relationship: in_ventral_side_of UBERON:0003072 ! optic cup @@ -221473,6 +222886,7 @@ xref: EMAPA:19194 xref: http://linkedlifedata.com/resource/umls/id/C0229549 xref: http://www.snomedbrowser.com/Codes/Details/264453001 xref: NCIT:C12357 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: continuous_with UBERON:0003689 ! sella turcica relationship: part_of UBERON:0001677 ! sphenoid bone @@ -221544,6 +222958,7 @@ synonym: "extraembryonic component" EXACT [AEO:0000195] xref: AEO:0000195 xref: EHDAA2:0000003 xref: EMAPA:16042 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 {source="AEO"} ! multi-tissue structure relationship: adjacent_to UBERON:0002050 ! embryonic structure relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage @@ -221694,6 +223109,8 @@ synonym: "descending aortic arch" EXACT [HP:0012305] synonym: "descending limb of arch of aorta" EXACT [FMA:13082] synonym: "descending trunk of aortic arch" EXACT [FMA:13082] xref: FMA:13082 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001508 {source="FMA"} ! arch of aorta @@ -221704,6 +223121,8 @@ def: "Area of aorta proximal to the ductus arteriosus." [http://orcid.org/0000-0 synonym: "preligamental region of aortic arch" EXACT [FMA:3774] xref: FMA:3774 xref: http://www.snomedbrowser.com/Codes/Details/197773005 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta @@ -221714,6 +223133,8 @@ def: "Area of aorta distal to the ductus arteriosus." [http://orcid.org/0000-000 synonym: "postligamental region of aortic arch" EXACT [FMA:3776] xref: FMA:3776 xref: http://www.snomedbrowser.com/Codes/Details/197852003 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta @@ -221728,6 +223149,8 @@ xref: FMA:3771 xref: FMA:3778 xref: http://www.snomedbrowser.com/Codes/Details/197677000 xref: http://www.snomedbrowser.com/Codes/Details/197932000 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0016920 {source="FMA"} ! descending trunk of arch of aorta @@ -221757,6 +223180,7 @@ synonym: "fibula metaphysis" EXACT [FMA:33745] synonym: "fibular metaphysis" EXACT [] xref: FMA:33745 is_a: UBERON:0001438 ! metaphysis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001438 ! metaphysis intersection_of: part_of UBERON:0001446 ! fibula relationship: part_of UBERON:0001446 ! fibula @@ -221780,6 +223204,7 @@ def: "A linear flat evelation on a tooth." [http://en.wikipedia.org/wiki/Dental_ synonym: "crista of tooth" EXACT [] synonym: "tooth ridge" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/245699009 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001091 ! calcareous tooth @@ -221852,6 +223277,7 @@ name: rostral margin of orbit alt_id: BSPOTEMP:58938a8e-359c-49d8-b3f7-5e1fd7e1a109 alt_id: http://purl.bioontology.org/ontology/provisional/58938a8e-359c-49d8-b3f7-5e1fd7e1a109 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001697 ! orbit of skull [Term] @@ -221919,6 +223345,7 @@ name: exoccipital-atlas joint alt_id: UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4 def: "A synovial joint that connects a vertebral bone 1 and connects a exoccipital bone." [OBOL:automatic] synonym: "atlanto-exoccipital joint" EXACT [UBERONTEMP:372c02ad-f2bd-4cf8-b55c-9b686c3d62f4] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0002217 ! synovial joint intersection_of: connects UBERON:0001092 ! vertebral bone 1 @@ -222024,6 +223451,7 @@ def: "A small protuberence on the lingual surface of the premaxilla, immediately synonym: "incisive bone" RELATED [] synonym: "incisive process" RELATED [] xref: UBERONTEMP:b0379d68-e54b-4dac-851c-0336cfb85a8f +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -222035,7 +223463,7 @@ alt_id: http://purl.bioontology.org/ontology/provisional/c4f989c4-2805-49a3-8241 def: "An anatomical group consisting of a placental caruncle and a placental cotyldeon, a placental unit in some mammals such as ruminants." [http://www.vivo.colostate.edu/hbooks/pathphys/reprod/placenta/ruminants.html] synonym: "placentome" EXACT [PHENOSCAPE:ad] synonym: "placentomes" RELATED PLURAL [] -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034921 ! multi organ part structure relationship: has_part UBERON:0010008 ! placental cotyledon @@ -222057,6 +223485,7 @@ name: intertarsal sesamoid alt_id: http://purl.bioontology.org/ontology/provisional/c97fd8d8-cf3e-4326-938d-bea58477423d def: "A sesamoid element that is part of a tarsal skeleton." [OBOL:automatic] synonym: "tarsal sesamoid" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0011141 ! appendicular ossicle is_a: UBERON:0013631 ! sesamoid element intersection_of: UBERON:0013631 ! sesamoid element @@ -222195,6 +223624,7 @@ name: cingulum of upper canine tooth synonym: "cingulum of maxillary canine tooth" EXACT [FMA:56752] synonym: "upper canine tooth cingulum" EXACT [FMA:56752] xref: FMA:56752 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013613 ! upper jaw cingulum is_a: UBERON:0017297 ! cingulum of canine tooth intersection_of: UBERON:0017295 ! cingulum of tooth @@ -222207,6 +223637,7 @@ name: cingulum of lower canine tooth synonym: "cingulum of mandibular canine tooth" EXACT [FMA:56753] synonym: "lower canine tooth cingulum" EXACT [FMA:56753] xref: FMA:56753 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013612 ! lower jaw cingulum is_a: UBERON:0017297 ! cingulum of canine tooth intersection_of: UBERON:0017295 ! cingulum of tooth @@ -222362,6 +223793,7 @@ synonym: "transverse folds of rectum" EXACT [FMA:75657] synonym: "transverse folds of rectum" RELATED [http://en.wikipedia.org/wiki/Houston_valve] xref: FMA:75657 xref: Houston:valve +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001052 ! rectum @@ -222369,6 +223801,7 @@ relationship: part_of UBERON:0001052 ! rectum id: UBERON:0017627 name: rectal valve def: "A thin diaphragm located in the posterior fifth of the intestine of some Centrolophidae, e.g. Seriolella punctata, Schedophilus huttoni and Psenes pellucidus, or in others a sphincter-like constriction, e.g. Seriolella brama. A deep purple fluid was confined to the valve in S. punctata, but was found throughout the intestine in the other two species referred to. The fluid might be used to void a coloured cloud to distract or deter a predator." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003978 ! valve relationship: part_of UBERON:0001052 ! rectum @@ -222380,6 +223813,7 @@ synonym: "fascis mirabilis" RELATED [http://www.briancoad.com/dictionary/complet synonym: "gas gland" EXACT [] synonym: "red gland" RELATED [http://www.briancoad.com/dictionary/complete%20dictionary.htm] synonym: "red gland of gas bladder" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002530 ! gland is_a: UBERON:0005177 ! trunk region element intersection_of: UBERON:0002530 ! gland @@ -222402,6 +223836,7 @@ id: UBERON:0017631 name: calcified structure of brain xref: Corpora:arenacea is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000476 ! acellular anatomical structure intersection_of: composed_primarily_of CHEBI:35156 ! calcium salt intersection_of: part_of UBERON:0000955 ! brain @@ -222482,6 +223917,7 @@ synonym: "marginal sinus (v. Szily)" EXACT [] synonym: "marginal sinus of von Szily" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/361511003 is_a: UBERON:0002050 ! embryonic structure +is_a: UBERON:0010312 ! immature eye relationship: part_of UBERON:0003072 ! optic cup [Term] @@ -222627,6 +224063,7 @@ name: ventral surface of penis subset: pheno_slim synonym: "urethral surface of penis" EXACT [FMA:19624] xref: FMA:19624 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: in_ventral_side_of UBERON:0000989 ! penis @@ -222680,7 +224117,9 @@ subset: pheno_slim synonym: "facies interna (os frontale)" EXACT [FMA:52856] synonym: "facies interna ossis frontalis" EXACT LATIN [FMA:52856, FMA:TA] xref: FMA:52856 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] @@ -222838,6 +224277,7 @@ synonym: "velopharyngeal sphincter" EXACT [http://medical-dictionary.thefreedict xref: FMA:46684 xref: http://www.snomedbrowser.com/Codes/Details/244801005 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010234 {source="FMA"} ! palatopharyngeus muscle [Term] @@ -222848,6 +224288,7 @@ synonym: "parafoveal belt" RELATED [] synonym: "parafoveal retina" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/264120002 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea relationship: surrounds UBERON:0001786 ! fovea centralis @@ -222859,6 +224300,7 @@ synonym: "perifoveal belt" RELATED [] synonym: "perifoveal retina" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/280617008 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000053 ! macula lutea relationship: surrounds UBERON:0001786 ! fovea centralis @@ -222870,6 +224312,7 @@ synonym: "foveola" RELATED [] xref: http://en.wikipedia.org/wiki/Foveola xref: http://www.snomedbrowser.com/Codes/Details/399857002 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001786 ! fovea centralis [Term] @@ -222966,6 +224409,7 @@ synonym: "renal pelvis of left kidney" EXACT [FMA:15579] xref: FMA:15579 xref: http://www.snomedbrowser.com/Codes/Details/243436005 is_a: UBERON:0001224 ! renal pelvis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0001223 ! left ureter relationship: part_of UBERON:0001223 ! left ureter @@ -222979,6 +224423,7 @@ synonym: "pelvis of right ureter" EXACT [FMA:15578] xref: FMA:15578 xref: http://www.snomedbrowser.com/Codes/Details/243419002 is_a: UBERON:0001224 ! renal pelvis +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0001224 ! renal pelvis intersection_of: part_of UBERON:0001222 ! right ureter relationship: part_of UBERON:0001222 ! right ureter @@ -223090,6 +224535,7 @@ relationship: has_quality PATO:0002462 ! collagenous id: UBERON:0018136 name: maxillary fenestra def: "A fenestra or hole which pierces the maxilla anterior to the antorbital fenestra." [http://palaeos.com/vertebrates/glossary/glossaryM.html] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0002397 ! maxilla @@ -223099,6 +224545,7 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:0018137 name: premaxillary fenestra def: "A fenestra that is part of a premaxilla." [OBOL:automatic] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:0002244 ! premaxilla @@ -223116,6 +224563,7 @@ synonym: "lobus glandulae mammariae" RELATED LATIN [BTO:0004718] xref: BTO:0004718 xref: http://linkedlifedata.com/resource/umls/id/C0222616 xref: NCIT:C93232 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009912 ! anatomical lobe relationship: has_part UBERON:0001912 ! lobule of mammary gland relationship: part_of UBERON:0000310 {gci_relation="part_of", gci_filler="NCBITaxon:9606"} ! breast @@ -223148,6 +224596,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0162436 xref: http://www.snomedbrowser.com/Codes/Details/369108006 xref: UMLS:C0162436 {source="BIRNLEX:1096"} is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -223236,6 +224685,7 @@ synonym: "mouth angle" EXACT [FMA:77269] xref: FMA:77269 xref: http://www.snomedbrowser.com/Codes/Details/263940002 xref: MFMO:0000145 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: part_of UBERON:0000166 {source="MFMO-modified"} ! oral opening @@ -223247,6 +224697,7 @@ synonym: "lower lip skin" EXACT [FMA:24767] xref: FMA:24767 xref: http://www.snomedbrowser.com/Codes/Details/281630002 is_a: UBERON:0001458 ! skin of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001835 ! lower lip relationship: part_of UBERON:0001835 ! lower lip @@ -223259,6 +224710,7 @@ synonym: "upper lip skin" EXACT [FMA:24765] xref: FMA:24765 xref: http://www.snomedbrowser.com/Codes/Details/281629007 is_a: UBERON:0001458 ! skin of lip +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:1000021 ! skin of face intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001834 ! upper lip @@ -223276,6 +224728,7 @@ synonym: "Shrapnell's membrane" EXACT [FMA:56721] xref: FMA:56721 xref: http://en.wikipedia.org/wiki/Pars_flaccida_of_tympanic_membrane xref: http://www.snomedbrowser.com/Codes/Details/279594005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane @@ -223286,6 +224739,7 @@ synonym: "pars tensa (membrana tympanica)" EXACT [FMA:56722] synonym: "pars tensa membranae tympanicae" EXACT LATIN [FMA:56722, FMA:TA] xref: FMA:56722 xref: http://www.snomedbrowser.com/Codes/Details/362555006 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002364 {source="FMA"} ! tympanic membrane @@ -223354,6 +224808,7 @@ synonym: "rau's process" EXACT [FMA:52771] xref: FMA:52771 xref: http://www.snomedbrowser.com/Codes/Details/368922002 is_a: UBERON:0004529 {source="FMA"} ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001689 {source="FMA"} ! malleus bone @@ -223386,7 +224841,7 @@ subset: pheno_slim synonym: "pulmonary lymphatic chain" EXACT [FMA:67999] synonym: "pulmonary lymphatic vasculature" RELATED [] xref: FMA:67999 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision intersection_of: UBERON:0011216 ! organ system subdivision intersection_of: part_of UBERON:0002048 ! lung @@ -223403,6 +224858,7 @@ synonym: "lymphatic vessel of lung" EXACT [] xref: FMA:234006 xref: http://www.snomedbrowser.com/Codes/Details/321862009 is_a: UBERON:0003456 ! respiratory system lymphatic vessel +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung @@ -223457,6 +224913,7 @@ xref: Labyrinthine:artery xref: NCIT:C32834 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: branching_part_of UBERON:0001633 {gci_relation="part_of", gci_filler="NCBITaxon:9606", cases="15%", source="WP"} ! basilar artery relationship: branching_part_of UBERON:0009689 {gci_relation="part_of", gci_filler="NCBITaxon:9606", cases="85-100%", source="WP"} ! anterior inferior cerebellar artery relationship: connected_to UBERON:0009689 {subset="human_reference_atlas"} ! anterior inferior cerebellar artery @@ -223560,6 +225017,7 @@ id: UBERON:0018239 name: rhombomere boundary def: "A boundary delimiting a rhombomere." [GO:0021654] synonym: "rhombomere junction" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0001892 ! rhombomere @@ -223611,6 +225069,7 @@ xref: FMA:52901 xref: http://en.wikipedia.org/wiki/Horizontal_plate_of_palatine_bone xref: http://www.snomedbrowser.com/Codes/Details/368686004 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -223766,6 +225225,7 @@ relationship: part_of RO:0002577 ! system id: UBERON:0018257 name: submucosa of digestive tract def: "Any portion of submucosa that lines the digestive tract." [http://orcid.org/0000-0002-6601-2165] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001555 ! digestive tract @@ -223808,6 +225268,8 @@ synonym: "entorhinal area, medial part, dorsal zone, layers 1-6" RELATED [NeuroN xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3141 xref: MBA:926 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] @@ -223820,12 +225282,14 @@ synonym: "ventral zone of the medial part of the entorhinal area" RELATED [Neuro xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=3142 xref: MBA:934 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0007224 ! medial entorhinal cortex [Term] id: UBERON:0018264 name: dorsal lateral ganglionic eminence def: "The dorsal region of the lateral ganglionic eminence. The cells in this area give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb." [GO:0021851] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004025 ! lateral ganglionic eminence @@ -223835,6 +225299,7 @@ name: anterior root of zygomatic arch def: "The anterior or rostral end of the zygomatic arch, which includes the temporal process of the zygomatic bone, but also including some of the body of the zygomatic bone. It may also include the zygomatico-temporal suture and the most rostral portion of the zygomatic process of the temporal bone." [MFMO:0000109] xref: MFMO:0000109 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002500 {source="MFMO"} ! zygomatic arch [Term] @@ -223849,6 +225314,7 @@ id: UBERON:0018267 name: atlantal spinal nerve foramen def: "Foramen housing the root of the spinal nerve seen in the neural arch of the first vertebrae (atlas). (see Edwards 1976)." [PHENOSCAPE:nizar] xref: UBERONTEMP:4fd613b3-3fd4-422e-a2f7-d7a2cde79d60 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen is_a: UBERON:4200105 ! nerve foramen relationship: part_of UBERON:0005814 ! arch of atlas @@ -223946,6 +225412,7 @@ relationship: capable_of_part_of GO:0035188 ! hatching id: UBERON:0018278 name: epidermal egg tooth def: "Epidermal outgrowth that facilitates breaking of the eggshell in archosaurs and monotremes." [PHENOSCAPE:alex] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0018276 ! egg tooth intersection_of: UBERON:0018276 ! egg tooth intersection_of: part_of UBERON:0001003 ! skin epidermis @@ -224129,6 +225596,7 @@ id: UBERON:0018297 name: resorption pit def: "A pit formed in an existing functional tooth, causing resorption of the surrounding dentine and periodontal tissues. (modified from LeBlanc and Reisz 2013, see figures 8, 10 for more details)." [PHENOSCAPE:curators] xref: UBERONTEMP:4fffbeb1-0774-4eb2-860e-5b50dece221c +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001708 ! jaw skeleton @@ -224148,6 +225616,7 @@ synonym: "lower jaw symphyseal tooth" EXACT [] synonym: "symphyseal tooth" BROAD [] xref: UBERONTEMP:2f99ad4b-d842-4ae9-8886-87ee98811fe5 is_a: UBERON:0003268 ! tooth of lower jaw +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0018542 ! mandibular symphyseal region relationship: adjacent_to UBERON:0006606 ! mandibular symphysis @@ -224194,6 +225663,8 @@ synonym: "adrenal gland tissue" EXACT [ncithesaurus:Adrenal_Gland_Tissue] xref: NCIT:C32051 xref: UBERONTEMP:a7bf197b-0db2-467e-824e-be45b39e2672 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000479 ! tissue intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: part_of UBERON:0002369 ! adrenal gland @@ -224212,6 +225683,7 @@ id: UBERON:0018305 name: bicipital surface def: "Region of the humerus associated with the biceps attachment areas." [PHENOSCAPE:Nizar] xref: UBERONTEMP:1aa93660-3c3d-4aff-94fa-93ea38c82df8 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0000976 ! humerus @@ -224247,7 +225719,7 @@ name: central figure of scute def: "Anatomical structure consisting of a pattern of ridges on an osteoderm." [PHENOSCAPE:curators] synonym: "central figure" EXACT [] xref: UBERONTEMP:56dad3b4-46b2-4823-a7b2-88a10ef98ae3 -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0008201 ! scute [Term] @@ -224295,6 +225767,7 @@ name: choanal groove def: "Grooves on the palatine bone which denote the passage of the choana or internal naris." [PHENOSCAPE:Alex] xref: UBERONTEMP:40f3ccb2-6447-4d14-b3db-b1c4bb41464b is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -224310,6 +225783,7 @@ id: UBERON:0018316 name: cuboid facet of calcaneum def: "Facet on the anterior surface of the calcaneus (as called calcaneum) for the articulation of the cuboid bone." [PHENOSCAPE:Alex] xref: UBERONTEMP:a3287636-2522-466e-9310-942cc1f3cd35 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001450 ! calcaneus @@ -224329,6 +225803,7 @@ id: UBERON:0018318 name: entocarotid fossa def: "A depression on the lateral surface of the braincase posterior to the Vidian canal (Conrad 2008)." [PHENOSCAPE:Alex] xref: UBERONTEMP:0ac04df7-2f9b-4c8a-bb52-f46b396e82b9 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0004746 ! prootic bone @@ -224372,6 +225847,7 @@ id: UBERON:0018323 name: hyoid articular area def: "Area on the otic capsule for the articulation of the hyoid." [PHENOSCAPE:alex] xref: UBERONTEMP:e1c1764a-61b5-4dce-8a59-7ca5a9de0a0b +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004905 ! articulation relationship: part_of UBERON:0004637 ! otic capsule @@ -224398,6 +225874,7 @@ id: UBERON:0018326 name: ilioischiadic foramen def: "Situated just caudal to the acetabulum, the foramen is bound dorsally by the illium and ventrally by the ischium. The foramen transmitts the ischiadic nerves and vessels (Baumel et al. 1993)." [PHENOSCAPE:alex] xref: UBERONTEMP:63e09c69-ac98-49ba-b232-2da5c7b19019 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen intersection_of: UBERON:0005744 ! bone foramen intersection_of: conduit_for UBERON:0001322 ! sciatic nerve @@ -224442,6 +225919,7 @@ name: intraramal joint def: "A joint in the lower jaw that enhances kinesis and for swallowing prey. Allows enhanced mobility and intraramal bending to increase gape." [PHENOSCAPE:alex] xref: UBERONTEMP:0f283c26-49e5-42e7-8ae1-e391eda7e4ce is_a: UBERON:0002217 ! synovial joint +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] @@ -224462,6 +225940,7 @@ name: labial cartilage def: "Distinct cartilage around the jaws of elasmobranchs." [PHENOSCAPE:Nizar] xref: UBERONTEMP:dab1de8a-9ec0-4e71-b7ec-8507bcbaccad is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: only_in_taxon NCBITaxon:7778 ! Elasmobranchii relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -224472,6 +225951,7 @@ name: lateral condyle of quadrate def: "Condyle on the lateral side of the quadrate." [PHENOSCAPE:Nizar] xref: UBERONTEMP:65292031-1a72-4f0a-a385-a479e6a8625f is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010313 ! neural crest-derived structure disjoint_from: UBERON:0018337 {source="lexical"} ! medial condyle of quadrate relationship: part_of UBERON:0006597 ! quadrate bone @@ -224490,6 +225970,7 @@ name: maxillary shank def: "The triangular shaped posterior fold at the angle of the mouth. From Chakrabarty 2006." [PHENOSCAPE:alex] xref: UBERONTEMP:d176af29-e3f6-4cfa-a8ee-d26740652bfd is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -224498,6 +225979,7 @@ name: medial condyle of quadrate def: "The medialmost condyle on the distal region of the quadrate, in contact with the pterygoid." [PHENOSCAPE:alex] xref: UBERONTEMP:0261cdfc-5e94-4560-8b5c-488f9f2194ca is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006597 ! quadrate bone [Term] @@ -224505,6 +225987,7 @@ id: UBERON:0018338 name: medial cotyla def: "The medialmost of the cotyla of the lower jaw, for articulation with the cranium." [PHENOSCAPE:alex] xref: UBERONTEMP:2d15fa5d-566b-4428-83e4-753ae839a965 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200050 ! cotyla relationship: part_of UBERON:0003278 ! skeleton of lower jaw @@ -224513,6 +225996,7 @@ id: UBERON:0018339 name: metotic fissure def: "An embryonic fissure between the otic capsule and the arches which develop into the occipital bones. The fissure may persist into adulthood. It is also referred to as the 'lateral otic fissure' The metotic fissure opens into the vestibular fontanelle, if the fontanelle is present. (Johanson et al. (2003)). Otherwise it opens to the metotic foramen." [http://palaeos.com/vertebrates/glossary/glossaryM.html, PHENOSCAPE:alex] xref: UBERONTEMP:41980771-8a82-40d2-877e-3156cc80857b +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0004637 ! otic capsule @@ -224529,6 +226013,7 @@ id: UBERON:0018341 name: nasal process of premaxilla def: "A bony projection of the premaxilla that extends cadually and separates the nasal bones." [PHENOSCAPE:alex] xref: UBERONTEMP:18a5dd1b-1213-471f-9a0b-06190b1ecf2c +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -224564,6 +226049,7 @@ relationship: part_of UBERON:0018345 ! stylar shelf id: UBERON:0018345 name: stylar shelf def: "The stylar shelf is an an expansion of the cingulum; it often bears small cusps (each with its own name...)." [http://animaldiversity.ummz.umich.edu/collections/mammal_anatomy/cheek_teeth_structure, PHENOSCAPE:curators] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0013164 ! molariform tooth @@ -224619,6 +226105,7 @@ name: quadrate condyle def: "The convex articular surface on the qudrate, part of the craniomandibular joint." [PHENOSCAPE:Alex] xref: UBERONTEMP:24ee2473-1c50-4d40-a2e9-5ddd3b2970ec is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0006597 ! quadrate bone intersection_of: part_of UBERON:0011171 ! joint connecting upper and lower jaws @@ -224671,7 +226158,9 @@ id: UBERON:0018359 name: subolfactory process def: "The ventral portion of the frontals which forms part of the lateral wall of the braincase. Modified from Lee and Caldwell 1998." [PHENOSCAPE:Alex] xref: UBERONTEMP:41e8ff4d-2e04-4d81-8db9-a8038e63f76b +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton @@ -224690,6 +226179,7 @@ name: suborbital shelf def: "On the neurocranium, a horizontal plate arising on the ventral junction of the orbital wall and basal plate on each side which extends from the nasal capsule to the otic capsule; it forms the floor of the orbit." [PHENOSCAPE:Wasila] comment: Definition from: LJV Compagno. 2002. Sharks of the World Volume 2; FAO Species Catalogue for Fishery Purposes No. 1 xref: UBERONTEMP:2b933bd2-0562-4624-8d49-ec5325a2da54 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: only_in_taxon NCBITaxon:119203 ! Selachii relationship: part_of UBERON:0001703 ! neurocranium @@ -224700,6 +226190,7 @@ name: supracondylar tubercle def: "Anatomical projection on the distal region of the femur or humerus and close to the condyles." [PHENOSCAPE:Nizar] comment: found on femur or humerus xref: UBERONTEMP:f721b85c-54d3-4e89-a61e-bfddacf0fe93 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0017163 ! skin bony tubercle relationship: part_of UBERON:0011583 ! stylopodial skeleton @@ -224724,6 +226215,7 @@ id: UBERON:0018365 name: supratemporal process def: "Process of the parietal." [PHENOSCAPE:Nizar] xref: UBERONTEMP:4d719e1e-df5d-4735-9490-45e6e22b549a +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000210 ! tetrapod parietal bone @@ -224791,6 +226283,7 @@ synonym: "pterygoid canal" EXACT [FMA:54756] xref: FMA:54756 xref: Pterygoid:canal xref: UBERONTEMP:1ab99cc2-1435-4a9f-ade0-4e3b8efc8774 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0018412 ! vidian nerve @@ -224803,6 +226296,7 @@ name: sallet def: "A unit of the tectoral membrane that is shaped like string of flat, pearls. Modified from Manley, Fey and Popper 2008 ." [ISBN:9780387714691, PHENOSCAPE:Alex] xref: UBERONTEMP:caa10252-5f7e-4a55-a72c-cf7986a89363 is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:8504 {source="ISBN:9780387714691"} ! Lepidosauria relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea relationship: present_in_taxon NCBITaxon:35033 {source="ISBN:9780387714691"} @@ -224970,6 +226464,7 @@ synonym: "superior posterior alveolar artery" EXACT [FMA:49757] xref: FMA:49757 xref: http://en.wikipedia.org/wiki/Posterior_superior_alveolar_artery is_a: UBERON:0001637 ! artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery relationship: part_of UBERON:0001616 ! maxillary artery @@ -225035,6 +226530,7 @@ synonym: "infraorbital foramen" EXACT [MFMO:0000054] xref: FMA:57718 xref: Infraorbital:foramen xref: MFMO:0000054 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: conduit_for UBERON:0004646 ! infraorbital artery @@ -225080,6 +226576,7 @@ synonym: "infraorbital groove" EXACT [http://en.wikipedia.org/wiki/Infraorbital_ synonym: "sulcus infraorbitalis" RELATED [http://en.wikipedia.org/wiki/Infraorbital_groove] xref: FMA:57746 xref: Infraorbital:groove +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone intersection_of: UBERON:4200230 ! surface of bone intersection_of: conduit_for UBERON:0004646 ! infraorbital artery @@ -225163,6 +226660,7 @@ synonym: "ethmoidal foramen" EXACT [] synonym: "ethmoidal foramina" RELATED PLURAL [] synonym: "foramina ethmoidalia" EXACT LATIN [] xref: Ethmoidal:foramina +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: part_of UBERON:0001679 ! ethmoid bone @@ -225189,6 +226687,7 @@ synonym: "nasal foramen" EXACT [] synonym: "nasal foramina" RELATED PLURAL [FMA:57653] xref: FMA:57653 xref: Nasal:foramina +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull intersection_of: UBERON:0013685 ! foramen of skull intersection_of: part_of UBERON:0001681 ! nasal bone @@ -225343,6 +226842,7 @@ def: "The region of the mandible on or near the midline (near the mandiblular sy synonym: "symphyseal region" BROAD [MFMO:0000147] xref: MFMO:0000147 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004742 ! dentary [Term] @@ -225356,6 +226856,7 @@ xref: FMA:14586 xref: TADS:0000495 xref: WBbt:0005791 xref: ZFA:0005807 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0000160 ! intestine @@ -225404,6 +226905,7 @@ xref: EFO:0003699 xref: TAO:0005028 xref: ZFA:0005028 is_a: UBERON:0000479 {source="ZFA"} ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002390 {source="ZFA"} ! hematopoietic system relationship: part_of UBERON:0005805 {source="ZFA"} ! dorsal aorta @@ -226234,6 +227736,7 @@ name: recessus basilaris def: "An opening of the otic duct within the inner ear. The recessus basilaris can open to the saccule (in frogs) or the lagena (in salamanders and caecilians). The sensory epithelium of the recessus basilaris is the basilar papilla (or papilla basilaris). Reference: Lewis, E.R. and R.E. Lombard. 1988. The amphibian inner ear. Pp. 93-123 in Fritszch, B., et al. (eds.), The Evolution of the Amphibian Auditory System. Wiley & Sons. [curated by D. Blackburn]." [PHENOSCAPE:wd] synonym: "basilar papillar recess" EXACT [] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -226274,6 +227777,7 @@ synonym: "fibula neck" EXACT [FMA:35508] synonym: "fibular neck" EXACT [] xref: EMAPA:37891 {source="MA:th"} xref: FMA:35508 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -226287,6 +227791,7 @@ def: "An interconnected tubular multi-tissue structure that contains fluid that synonym: "cardiac vasculature" EXACT [FMA:73747] xref: FMA:73747 xref: ZFA:0005811 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -226390,6 +227895,7 @@ def: "The meshwork of astrocytic foot processes (glial end feet) covered by a ba synonym: "glia limitans" EXACT LATIN [http://en.wikipedia.org/wiki/Glia_limitans] xref: Glia:limitans xref: NIF_Subcellular:nlx_subcell_100209 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure relationship: has_part GO:0097450 ! astrocyte end-foot relationship: immediately_deep_to UBERON:0002361 ! pia mater @@ -226502,6 +228008,7 @@ xref: BTO:0004638 xref: FMA:13119 xref: http://www.snomedbrowser.com/Codes/Details/88410004 is_a: UBERON:0000414 ! mucous gland +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0000414 ! mucous gland @@ -226697,6 +228204,7 @@ synonym: "lens zone" EXACT [FMA:58067] synonym: "zone of lens" RELATED [FMA:58067] xref: FMA:58067 xref: http://www.snomedbrowser.com/Codes/Details/280630009 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0000965 ! lens of camera-type eye @@ -226705,6 +228213,7 @@ id: UBERON:0019211 name: supcapsular region of anterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001804 ! capsule of lens relationship: part_of UBERON:0019208 ! anterior pole of lens @@ -226713,6 +228222,7 @@ id: UBERON:0019212 name: supcapsular region of posterior region of lens comment: See https://github.com/obophenotype/uberon/issues/599 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: adjacent_to UBERON:0001804 ! capsule of lens relationship: part_of UBERON:0016459 ! posterior pole of lens @@ -226799,6 +228309,7 @@ id: UBERON:0019243 name: skin crease synonym: "skin groove" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/280385004 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove is_a: UBERON:3000961 ! external integument structure relationship: has_quality PATO:0002255 ! grooved @@ -227028,6 +228539,7 @@ xref: HBA:9284 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1444 xref: NLX:98733 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003044 ! uncinate fasciculus relationship: part_of UBERON:0011299 {source="HBA"} ! white matter of telencephalon @@ -227038,6 +228550,7 @@ xref: BIRNLEX:1447 xref: DHBA:12130 xref: HBA:4900 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus [Term] @@ -227048,6 +228561,7 @@ xref: BIRNLEX:1311 xref: DHBA:12129 xref: HBA:4897 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0019280 {source="DHBA"} ! rostral gyrus [Term] @@ -227200,6 +228714,7 @@ id: UBERON:0019306 name: nose epithelium xref: EMAPA:35958 xref: MA:0003171 +is_a: UBERON:0010371 ! ecto-epithelium is_a: UBERON:0019304 ! sensory organ epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000004 ! nose @@ -227279,6 +228794,7 @@ id: UBERON:0019315 name: meibum def: "An oily substance that prevents evaporation of the eye's tear film." [http://www.ncbi.nlm.nih.gov/pubmed/20664693] synonym: "tarsal gland secretion" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001866 ! sebum intersection_of: UBERON:0001866 ! sebum intersection_of: produced_by UBERON:0001818 ! tarsal gland @@ -227419,6 +228935,7 @@ xref: MA:0000920 xref: MBA:822 is_a: UBERON:0000481 {source="ABA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 {source="ABA"} ! hippocampal formation [Term] @@ -227426,6 +228943,7 @@ id: UBERON:0022232 name: secondary visual cortex xref: EMAPA:35758 xref: MA:0000915 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035014 {source="cjm"} ! functional part of brain relationship: part_of UBERON:0000411 {source="cjm"} ! visual cortex relationship: part_of UBERON:0002021 {source="MA"} ! occipital lobe @@ -227751,6 +229269,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2333 xref: Planum:temporale is_a: UBERON:0000481 {source="HBA"} ! multi-tissue structure is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001871 {source="HBA"} ! temporal lobe relationship: source_atlas Harvard-Oxford:Atlas @@ -227811,6 +229330,7 @@ xref: FMA:59402 xref: http://www.snomedbrowser.com/Codes/Details/368792002 xref: Lacrimal:lake is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001811 ! conjunctiva [Term] @@ -227822,6 +229342,7 @@ xref: FMA:59407 xref: http://www.snomedbrowser.com/Codes/Details/362533003 xref: Lacrimal:papilla is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001850 ! lacrimal drainage system [Term] @@ -227831,6 +229352,7 @@ def: "A sharp bend between consecutive segments of the colon." [http://orcid.org synonym: "flexura coli" EXACT [FMA:14555] xref: FMA:14555 xref: http://www.snomedbrowser.com/Codes/Details/245426004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001155 ! colon @@ -227848,7 +229370,6 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227387 xref: http://www.snomedbrowser.com/Codes/Details/245428003 xref: NCIT:C12267 xref: Splenic:flexure -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0022275 ! colic flexure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -227866,7 +229387,6 @@ xref: Hepatic:flexure xref: http://linkedlifedata.com/resource/umls/id/C0227385 xref: http://www.snomedbrowser.com/Codes/Details/245427008 xref: NCIT:C12266 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0022275 ! colic flexure relationship: develops_from UBERON:0001045 {source="Wikipedia"} ! midgut @@ -227953,6 +229473,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=456 xref: http://www.snomedbrowser.com/Codes/Details/280070003 xref: http://www.snomedbrowser.com/Codes/Details/369281005 xref: Pineal:recess +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002286 ! third ventricle @@ -227991,6 +229512,7 @@ id: UBERON:0022287 name: tear film def: "An aqueous substance that covers the anterior surface of the eyeball, keeping the cornea wet." [http://orcid.org/0000-0002-6601-2165] synonym: "precorneal film" EXACT [MGI:anna] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000456 ! secretion of exocrine gland is_a: UBERON:0006314 ! bodily fluid relationship: composed_primarily_of UBERON:0001827 {notes="primarily aqueous layer"} ! secretion of lacrimal gland @@ -228004,6 +229526,7 @@ id: UBERON:0022288 name: surface of eyeball synonym: "surface of region of wall of eyeball" RELATED [FMA:58315] xref: FMA:58315 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0010230 ! eyeball of camera-type eye @@ -228171,6 +229694,7 @@ subset: cumbo synonym: "lamina" BROAD [CUMBO:CUMBO] synonym: "layer" BROAD [CUMBO:CUMBO] xref: NLX:149357 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005162 ! multi cell part structure intersection_of: UBERON:0005162 ! multi cell part structure intersection_of: has_quality PATO:0002124 ! laminar @@ -228379,7 +229903,6 @@ synonym: "layer 2 of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "layer II of entorhinal cortex" RELATED [NLXANAT:090821] synonym: "outermost cell layer of entorhinal cortex" RELATED [https://doi.org/10.1155/2008/381243] xref: NLXANAT:090821 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011215 ! central nervous system cell part cluster is_a: UBERON:0022303 ! nervous system cell part layer intersection_of: UBERON:0022303 ! nervous system cell part layer @@ -228499,6 +230022,7 @@ synonym: "medial orbitofrontal cortex" EXACT [http://orcid.org/0000-0002-6601-21 xref: BIRNLEX:1249 xref: FMA:273320 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022716 {source="lexical"} ! lateral orbital frontal cortex relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex @@ -228515,6 +230039,7 @@ xref: EFO:0002471 xref: FMA:271593 xref: Posterior:cingulate is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0003027 {source="NIFSTD"} ! cingulate cortex @@ -228583,7 +230108,7 @@ name: lung field def: "A specific region of the foregut into the area in which the lung will develop." [GOC:dph, GOC:mtg_lung] synonym: "lung field" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/34922002 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0007688 ! anlage intersection_of: UBERON:0007688 ! anlage intersection_of: has_potential_to_develop_into UBERON:0002048 ! lung @@ -228600,6 +230125,7 @@ xref: DHBA:12152 xref: FMA:71033 xref: http://neuro.imm.dtu.dk/wiki/Occipital_fusiform_gyrus is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -228610,6 +230136,7 @@ synonym: "lateral occipital cortex, inferior division" EXACT [https://github.com synonym: "lateral occipital cortex, inferior division (OLI)" EXACT [FMA:71034] xref: FMA:71034 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006114 ! lateral occipital cortex relationship: source_atlas Harvard-Oxford:Atlas @@ -228619,6 +230146,7 @@ name: superior lateral occipital cortex synonym: "lateral occipital cortex, superior division" EXACT [https://github.com/obophenotype/uberon/issues/630] xref: FMA:71035 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0006114 ! lateral occipital cortex relationship: source_atlas Harvard-Oxford:Atlas @@ -228631,6 +230159,7 @@ synonym: "parahippocampal gyrus, anterior division" EXACT [http://orcid.org/0000 xref: DHBA:12163 xref: FMA:71039 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002973 ! parahippocampal gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -228653,6 +230182,7 @@ synonym: "FuGt" RELATED ABBREVIATION [DHBA:12143] synonym: "occipitotemporal (fusiform) gyrus, temporal part" EXACT [DHBA:12143] xref: DHBA:12143 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -228661,6 +230191,7 @@ id: UBERON:0022396 name: anterior temporal fusiform gyrus synonym: "occipitotemporal (fusiform) gyrus, anterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022397 {source="lexical"} ! posterior temporal fusiform gyrus relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -228670,6 +230201,7 @@ id: UBERON:0022397 name: posterior temporal fusiform gyrus synonym: "occipitotemporal (fusiform) gyrus, posterior division" EXACT [http://orcid.org/0000-0001-6755-0259] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002766 ! fusiform gyrus relationship: source_atlas Harvard-Oxford:Atlas @@ -228681,6 +230213,7 @@ synonym: "paracingulate gyrus (PAC)" EXACT [FMA:71037] xref: DHBA:146034872 xref: FMA:71037 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000956 {source="FMA"} ! cerebral cortex relationship: part_of UBERON:0016525 {source="DHBA"} ! frontal lobe @@ -228748,6 +230281,7 @@ synonym: "anterior portion of corona radiata" EXACT [DHBA:15541] synonym: "cor-a" RELATED ABBREVIATION [DHBA:15541] xref: DHBA:15541 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0022427 {source="lexical"} ! posterior corona radiata relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html @@ -228759,6 +230293,7 @@ synonym: "cor-s" RELATED ABBREVIATION [DHBA:15542] synonym: "superior portion of corona radiata" EXACT [DHBA:15542] xref: DHBA:15542 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html @@ -228769,6 +230304,7 @@ synonym: "cor-p" RELATED ABBREVIATION [DHBA:15543] synonym: "posterior portion of corona radiata" EXACT [DHBA:15543] xref: DHBA:15543 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004682 {source="DHBA"} ! corona radiata of neuraxis relationship: source_atlas http://neuro.debian.net/pkgs/fsl-jhu-dti-whitematter-atlas.html @@ -228859,6 +230395,7 @@ synonym: "rostral anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:975] xref: BIRNLEX:975 xref: FMA:271599 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0009835 {source="NIFSTD"} ! anterior cingulate cortex [Term] @@ -228869,6 +230406,7 @@ synonym: "EOl" RELATED ABBREVIATION [BIRNLEX:2705] xref: BIRNLEX:2705 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2274 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002728 {source="NIFSTD"} ! entorhinal cortex relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex @@ -228879,6 +230417,7 @@ def: "A group of structures defined by connectivity, namely, structures that rec synonym: "primary olfactory areas" RELATED [BIRNLEX:2706] xref: BIRNLEX:2706 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002894 {source="NIFSTD"} ! olfactory cortex [Term] @@ -228903,6 +230442,7 @@ synonym: "pericalcarine cortex" EXACT [BIRNLEX:1059] synonym: "pericalcarine cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1059] xref: BIRNLEX:1059 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 {source="NIFSTD"} ! parietal lobe [Term] @@ -229010,6 +230550,7 @@ synonym: "orgital_gyri" RELATED [BIRNLEX:1223] xref: BIRNLEX:1223 xref: http://linkedlifedata.com/resource/umls/id/C0152301 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] @@ -229028,6 +230569,7 @@ synonym: "lateral orbital frontal cortex" EXACT HUMAN_PREFERRED [BIRNLEX:1244] synonym: "lateral orbital frontal cortex" EXACT [BIRNLEX:1244] xref: BIRNLEX:1244 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004167 {source="NIFSTD"} ! orbitofrontal cortex [Term] @@ -229038,6 +230580,7 @@ synonym: "transverse frontopolar gyri complex" EXACT HUMAN_PREFERRED [BIRNLEX:12 synonym: "transverse frontopolar gyri complex" EXACT [BIRNLEX:1258] xref: BIRNLEX:1258 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 {source="NIFSTD"} ! frontal lobe [Term] @@ -229086,6 +230629,7 @@ name: composite part spanning multiple base regional parts of brain synonym: "composite part spanning multiple base regional parts of brain" EXACT HUMAN_PREFERRED [BIRNLEX:1304] synonym: "composite part spanning multiple base regional parts of brain" EXACT [BIRNLEX:1304] xref: BIRNLEX:1304 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034925 ! anatomical collection relationship: part_of UBERON:0000955 ! brain @@ -229457,6 +231001,7 @@ synonym: "superficial feature part of occipital lobe" EXACT [BIRNLEX:4024] synonym: "superficial feature part of occipital lobe" EXACT HUMAN_PREFERRED [BIRNLEX:4024] xref: BIRNLEX:4024 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -229663,6 +231208,7 @@ xref: BIRNLEX:944 xref: FMA:275157 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2027 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002421 {source="NIFSTD"} ! hippocampal formation @@ -229721,6 +231267,7 @@ synonym: "gross anatomical parts of the cerebellum" EXACT HUMAN_PREFERRED [BIRNL synonym: "gross anatomical parts of the cerebellum" EXACT [BIRNLEX:996] xref: BIRNLEX:996 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -229730,6 +231277,7 @@ def: "An area of the brain that locates at the interception of temporal and pari synonym: "temporoparietal junction" EXACT [NLX:144255] xref: NLX:144255 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000956 {source="NIFSTD"} ! cerebral cortex @@ -229760,6 +231308,7 @@ xref: HBA:4177 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2020 xref: NLX:144291 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002769 {source="NIFSTD"} ! superior temporal gyrus @@ -229789,6 +231338,7 @@ synonym: "islands of calleja of olfactory tubercle" EXACT [NLX:50741] synonym: "islets of calleja" RELATED [NLX:50741] xref: NLX:50741 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja relationship: part_of UBERON:0001883 {source="NIFSTD"} ! olfactory tubercle @@ -229806,6 +231356,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2273 xref: MBA:489 xref: NLX:55138 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0001881 {source="NIFSTD"} ! island of Calleja @@ -229825,6 +231376,7 @@ name: neural system def: "A set of neural structures that subserve a specific function, e.g., visual system." [NLXANAT:090802] synonym: "neural system" EXACT [NLXANAT:090802] xref: NLXANAT:090802 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0011216 ! organ system subdivision relationship: part_of UBERON:0001016 ! nervous system @@ -229881,6 +231433,7 @@ synonym: "postrhinal cortex of rodent of burwell et al 1995" EXACT [NLXANAT:1005 synonym: "rodent postrhinal cortex" RELATED [NLXANAT:1005005] xref: NLXANAT:1005005 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -229891,6 +231444,7 @@ synonym: "sommer's sector" EXACT [NLXANAT:1005009] synonym: "sommers sector" RELATED [NLXANAT:1005009] xref: NLXANAT:1005009 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002421 ! hippocampal formation [Term] @@ -229968,6 +231522,7 @@ def: "Part of bed nucleus of stria terminalis, comprising a distinct, large, egg synonym: "bed nuclei of the stria terminalis oval nucleus" EXACT [NLXANAT:1005035] xref: NLXANAT:1005035 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001880 {source="NIFSTD"} ! bed nucleus of stria terminalis [Term] @@ -230086,6 +231641,7 @@ synonym: "rostral portion of the medial accessory olive" EXACT [NLXANAT:20081247 synonym: "rostral portion of the medial accessory olive" EXACT HUMAN_PREFERRED [NLXANAT:20081247] xref: NLXANAT:20081247 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0002127 {source="NIFSTD"} ! inferior olivary complex @@ -230108,6 +231664,7 @@ synonym: "superficial feature part of the cerebellum" EXACT HUMAN_PREFERRED [NLX synonym: "superficial feature part of the cerebellum" EXACT [NLXANAT:20081250] xref: NLXANAT:20081250 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -230175,6 +231732,7 @@ synonym: "basis pontis" EXACT HUMAN_PREFERRED [NLXANAT:20090704] xref: http://en.wikipedia.org/wiki/Basilar_part_of_pons xref: NLXANAT:20090704 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0000988 {source="NIFSTD"} ! pons @@ -230236,6 +231794,7 @@ xref: BIRNLEX:1064 xref: FMA:274414 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=842 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex @@ -230247,6 +231806,7 @@ synonym: "medial transverse frontopolar gyrus" EXACT HUMAN_PREFERRED [BIRNLEX:10 xref: BIRNLEX:1074 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=823 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex @@ -230259,6 +231819,7 @@ xref: BIRNLEX:1082 xref: FMA:274408 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0022730 {source="NIFSTD"} ! transverse frontopolar gyri complex @@ -230599,6 +232160,7 @@ synonym: "circuit part of central nervous system" EXACT [BIRNLEX:2513] synonym: "circuit part of central nervous system" EXACT HUMAN_PREFERRED [BIRNLEX:2513] xref: BIRNLEX:2513 is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001017 ! central nervous system [Term] @@ -231003,6 +232565,7 @@ id: UBERON:0025736 name: chemoarchitectural part of striatum synonym: "chemoarchitectural part of neostriatum" EXACT [NLXANAT:20090502] xref: NLXANAT:20090502 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0024090 ! chemoarchitectural part of brain intersection_of: UBERON:0024090 ! chemoarchitectural part of brain intersection_of: part_of UBERON:0002435 ! striatum @@ -231657,6 +233220,7 @@ synonym: "Hadjikhani visuotopic parcellation scheme" RELATED [BIRNLEX:4052] synonym: "Hadjikhani visuotopic partition scheme" RELATED [BIRNLEX:4052] xref: BIRNLEX:4052 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -231667,6 +233231,7 @@ synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT [BIRNLEX:4062] synonym: "tootell and Hadjikhani (2001) loc/lop complex" EXACT HUMAN_PREFERRED [BIRNLEX:4062] xref: BIRNLEX:4062 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -231676,6 +233241,7 @@ synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" synonym: "press, brewer, dougherty, wade and wandell (2001) visuotopic area v7" EXACT [BIRNLEX:4063] xref: BIRNLEX:4063 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002021 ! occipital lobe [Term] @@ -231688,6 +233254,7 @@ synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme re synonym: "ongur, price, and ferry (2003) prefrontal cortical partition scheme region" EXACT [BIRNLEX:4064] xref: BIRNLEX:4064 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 ! frontal lobe [Term] @@ -231760,6 +233327,7 @@ synonym: "isthmus of cingulate cortex" EXACT [BIRNLEX:943] synonym: "isthmus of cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:943] xref: BIRNLEX:943 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003027 ! cingulate cortex [Term] @@ -231804,6 +233372,7 @@ xref: BIRNLEX:994 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=400 xref: http://linkedlifedata.com/resource/umls/id/C0262266 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0000007 {source="NIFSTD"} ! pituitary gland [Term] @@ -232015,6 +233584,7 @@ name: posterior superior frontal sulcus synonym: "posterior superior frontal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:1130] synonym: "posterior superior frontal sulcus" EXACT [BIRNLEX:1130] xref: BIRNLEX:1130 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space disjoint_from: UBERON:0027716 {source="lexical"} ! anterior superior frontal sulcus relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus @@ -232108,6 +233678,7 @@ synonym: "polar notch" RELATED [NeuroNames:838] synonym: "sulcus frontalis superior anterior" RELATED LATIN [NeuroNames:838] xref: BIRNLEX:1338 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=838 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002562 {source="NIFSTD"} ! superior frontal sulcus @@ -232240,6 +233811,7 @@ xref: FMA:77833 xref: http://www.snomedbrowser.com/Codes/Details/279843007 xref: MA:0003003 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001855 {source="MA"} ! cochlear duct of membranous labyrinth [Term] @@ -232295,6 +233867,7 @@ name: calcarine sulcus (dorsal) synonym: "calcarine sulcus (dorsal)" EXACT HUMAN_PREFERRED [BIRNLEX:4050] synonym: "calcarine sulcus (dorsal)" EXACT [BIRNLEX:4050] xref: BIRNLEX:4050 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002586 ! calcarine sulcus @@ -232304,6 +233877,7 @@ name: calcarine sulcus (ventral) synonym: "calcarine sulcus (ventral)" EXACT [BIRNLEX:4051] synonym: "calcarine sulcus (ventral)" EXACT HUMAN_PREFERRED [BIRNLEX:4051] xref: BIRNLEX:4051 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002586 ! calcarine sulcus @@ -232628,6 +234202,7 @@ def: "Component of the temporal lobe, lateral aspect. The rostral boundary is th synonym: "banks of superior temporal sulcus" EXACT HUMAN_PREFERRED [BIRNLEX:862] synonym: "banks of superior temporal sulcus" EXACT [BIRNLEX:862] xref: BIRNLEX:862 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002734 ! superior temporal sulcus @@ -232639,6 +234214,7 @@ synonym: "caudal anterior cingulate cortex" EXACT HUMAN_PREFERRED [BIRNLEX:967] synonym: "caudal anterior cingulate cortex" EXACT [BIRNLEX:967] xref: BIRNLEX:967 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0009835 ! anterior cingulate cortex [Term] @@ -232967,6 +234543,7 @@ synonym: "cytoarchitecture of entorhinal cortex" EXACT HUMAN_PREFERRED [NLXANAT: synonym: "cytoarchitecture of entorhinal cortex" EXACT [NLXANAT:20090703] xref: NLXANAT:20090703 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002728 ! entorhinal cortex [Term] @@ -233073,6 +234650,7 @@ id: UBERON:0034670 name: palatal taste bud def: "A taste bud that is located on the soft palate, in the roof of the mouth." [http://orcid.org/0000-0002-6601-2165, https://doi.org/10.1523/JNEUROSCI.5142-05.2006] synonym: "taste bud of palate" EXACT [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element is_a: UBERON:0034722 ! mouth roof taste bud intersection_of: UBERON:0001727 ! taste bud @@ -233104,6 +234682,8 @@ synonym: "vestibular area" BROAD [FMA:78478] xref: FMA:78478 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=623 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002422 ! fourth ventricle [Term] @@ -233210,6 +234790,8 @@ synonym: "Adams apple" EXACT [] xref: BTO:0003656 xref: FMA:55304 xref: http://www.snomedbrowser.com/Codes/Details/362648003 +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 {source="FMA"} ! zone of organ relationship: part_of UBERON:0001738 ! thyroid cartilage @@ -233247,6 +234829,7 @@ synonym: "infundibuliform fascia" RELATED [http://en.wikipedia.org/wiki/Internal xref: FMA:77299 xref: http://en.wikipedia.org/wiki/Internal_spermatic_fascia xref: http://www.snomedbrowser.com/Codes/Details/279586003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034688 ! spermatic fascia relationship: part_of UBERON:0001300 ! scrotum @@ -233270,6 +234853,7 @@ name: gubernacular bulb, intra-abdominal part def: "The portion of the gubernacular bulb that is located within the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] synonym: "gubernacular cone" RELATED [ISBN:0123971756] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0012326 ! gubernacular bulb @@ -233278,6 +234862,7 @@ id: UBERON:0034695 name: gubernacular bulb, extra-abdominal part def: "The portion of the gubernacular bulb that is located external to the abdomen." [http://orcid.org/0000-0002-6601-2165, ISBN:0123971756] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0012326 ! gubernacular bulb @@ -233300,6 +234885,7 @@ synonym: "heart inflow tract" EXACT [] synonym: "venous pole" RELATED [http://www.ncbi.nlm.nih.gov/pubmed/20735616] xref: FMA:14057 is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: channel_for UBERON:0000178 ! blood relationship: channels_from UBERON:0001637 ! artery relationship: channels_into UBERON:0000948 ! heart @@ -233356,6 +234942,7 @@ xref: AEO:0001008 xref: BTO:0000314 xref: EHDAA2_RETIRED:0004654 xref: FMA:64807 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0001016 ! nervous system @@ -233517,6 +235104,7 @@ relationship: present_in_taxon NCBITaxon:32443 ! Teleostei id: UBERON:0034720 name: head taste bud def: "A taste bud that is located on the skin of the head." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud intersection_of: part_of UBERON:0001084 ! skin of head @@ -233586,6 +235174,7 @@ relationship: part_of UBERON:0000377 ! maxillary nerve id: UBERON:0034726 name: trunk taste bud def: "A taste bud that is located on the skin of the trunk." [http://orcid.org/0000-0002-6601-2165] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005177 ! trunk region element is_a: UBERON:0034717 ! integumental taste bud intersection_of: UBERON:0001727 ! taste bud @@ -233771,6 +235360,7 @@ xref: FMA:61957 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=203 xref: http://www.snomedbrowser.com/Codes/Details/362363008 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0014527 {source="DHBA", source="FMA"} ! posterior limb of internal capsule [Term] @@ -233780,6 +235370,7 @@ def: "Part of cortex considered to function in higher level visual functions." [ synonym: "visual association area" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] synonym: "visual association cortex" RELATED [http://en.wikipedia.org/wiki/Visual_cortex] xref: NLX:143553 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035015 ! association cortex intersection_of: UBERON:0035015 ! association cortex intersection_of: part_of UBERON:0000411 ! visual cortex @@ -233800,6 +235391,7 @@ xref: FMA:272953 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1354 xref: http://en.wikipedia.org/wiki/Primary_auditory_cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex [Term] @@ -233818,6 +235410,7 @@ xref: DHBA:10239 xref: FMA:272944 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1557 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest disjoint_from: UBERON:0035927 ! sulcus of parietal lobe relationship: part_of UBERON:0001393 {source="cjm"} ! auditory cortex @@ -233899,8 +235492,8 @@ name: glabella region def: "A region of the forehead corresponding to the space between the eyebrows and above the nose." [http://en.wikipedia.org/wiki/Glabella, http://orcid.org/0000-0002-6601-2165] synonym: "glabella" NARROW [] xref: http://en.wikipedia.org/wiki/Glabella -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0001444 ! subdivision of head +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: has_part UBERON:0016440 ! glabella region of bone relationship: has_part UBERON:0034765 ! glabella skin relationship: part_of UBERON:0008200 ! forehead @@ -233911,6 +235504,7 @@ name: buccal vestibule def: "The buccal vestibule is the space external to teeth and gums and internal to lips and cheeks. The proportion of its walls formed by the lips varies according to species depending upon their feeding action. The horse like most herbivores has a relatively small opening. The buccal vestibule opens to the outside rostrally via a U shaped slit the oral fissure. When the mouth is closed the buccal vestibule and the mouth cavity proper connect via spaces between and behind the teeth. These allow free communication between the two sides of the vestibule. Several salivary ducts open into the dorso caudal part of the vestibule: Parotid gland - opens into the cheek on the small parotid papilla, opposite to the caudal part of upper 4 th premolar teeth. Zygomatic gland - the main duct opens in the caudal part of the upper 1 st molar tooth on a small papilla near the vestibular fornix. Submucous glands - minimal in number, confined to the lower lip and adjacent part of the cheek. Secretion occurs through about 10 openings located near the fornix of the vestibule." [MURDOCH:240] xref: FMA:289320 xref: MURDOCH:240 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0001833 ! lip relationship: adjacent_to UBERON:0006956 ! buccal mucosa @@ -233966,6 +235560,7 @@ synonym: "free margin of eyelid" EXACT [] xref: EMAPA:37905 {source="MA:th"} xref: FMA:59356 xref: http://www.snomedbrowser.com/Codes/Details/362527007 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034921 ! multi organ part structure relationship: part_of UBERON:0001711 ! eyelid @@ -233983,6 +235578,7 @@ xref: http://en.wikipedia.org/wiki/Uncus xref: http://www.snomedbrowser.com/Codes/Details/279213004 xref: NCIT:C33831 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002973 {source="DHBA"} ! parahippocampal gyrus [Term] @@ -233991,6 +235587,7 @@ name: uncal CA1 synonym: "CA1U" RELATED ABBREVIATION [DHBA:266441267] xref: DHBA:266441267 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] @@ -233999,6 +235596,7 @@ name: uncal CA2 synonym: "CA2U" RELATED ABBREVIATION [DHBA:266441311] xref: DHBA:266441311 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] @@ -234007,6 +235605,7 @@ name: uncal CA3 synonym: "CA3U" RELATED ABBREVIATION [DHBA:266441355] xref: DHBA:266441355 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] @@ -234015,6 +235614,7 @@ name: rostral CA1 synonym: "CA1R" RELATED ABBREVIATION [DHBA:11275] xref: DHBA:11275 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] @@ -234023,6 +235623,7 @@ name: rostral CA2 synonym: "CA2R" RELATED ABBREVIATION [DHBA:11285] xref: DHBA:11285 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] @@ -234031,6 +235632,7 @@ name: rostral CA3 synonym: "CA3R" RELATED ABBREVIATION [DHBA:11295] xref: DHBA:11295 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] @@ -234039,6 +235641,7 @@ name: caudal CA1 synonym: "CA1C" RELATED ABBREVIATION [DHBA:11280] xref: DHBA:11280 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003881 {source="DHBA"} ! CA1 field of hippocampus [Term] @@ -234047,6 +235650,7 @@ name: caudal CA2 synonym: "CA2C" RELATED ABBREVIATION [DHBA:11290] xref: DHBA:11290 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003882 {source="DHBA"} ! CA2 field of hippocampus [Term] @@ -234055,6 +235659,7 @@ name: caudal CA3 synonym: "CA3C" RELATED ABBREVIATION [DHBA:11301] xref: DHBA:11301 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003883 {source="DHBA"} ! CA3 field of hippocampus [Term] @@ -234639,6 +236244,7 @@ synonym: "PoPC" RELATED ABBREVIATION [DHBA:10214] xref: DHBA:10214 xref: http://en.wikipedia.org/wiki/Posterior_parietal_cortex is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016530 {source="DHBA"} ! parietal cortex [Term] @@ -234677,6 +236283,7 @@ xref: BTO:0004341 xref: DHBA:10290 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1192 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034891 ! insular cortex [Term] @@ -234695,6 +236302,7 @@ xref: DHBA:10289 xref: DHBA:10328 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1780 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034891 ! insular cortex [Term] @@ -234756,6 +236364,7 @@ name: palatine process of premaxilla def: "Lingual ledge on the inner surface of the premaxilla." [AAO:0000414, AAO:LAP] synonym: "pars palatina of premaxilla" EXACT [AAO:0000414] xref: AAO:0000414 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla relationship: part_of UBERON:0012074 {gci_relation="part_of", gci_filler="NCBITaxon:40674"} ! bony part of hard palate @@ -234974,6 +236583,7 @@ name: dorsal surface of penis synonym: "dorsum of penis" EXACT [FMA:19623] synonym: "dorsum penis" EXACT [FMA:TA] xref: FMA:19623 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: in_dorsal_side_of UBERON:0000989 ! penis @@ -235071,6 +236681,7 @@ synonym: "corona ciliaris" EXACT [FMA:58431] xref: FMA:58431 xref: http://www.snomedbrowser.com/Codes/Details/280859006 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] @@ -235083,6 +236694,7 @@ xref: FMA:58480 xref: http://www.snomedbrowser.com/Codes/Details/368830002 xref: NCIT:C33219 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001775 {source="FMA"} ! ciliary body [Term] @@ -235090,6 +236702,7 @@ id: UBERON:0034937 name: pharyngeal bar synonym: "branchial bar" RELATED [] synonym: "gill bar" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 ! skeletal element is_a: UBERON:0013765 ! digestive system element relationship: only_in_taxon NCBITaxon:33511 ! Deuterostomia @@ -235155,7 +236768,6 @@ id: UBERON:0034942 name: vibrissal follicle-sinus complex def: "A sensory receptor of the mammalian integument system that consist of a blood sinus plus follicle, and sometimes concentric rings of epidermal tissue." [http://www.ncbi.nlm.nih.gov/pubmed/16342212] synonym: "F-SC" RELATED ABBREVIATION [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012451 ! sensory receptor relationship: has_part UBERON:0010419 ! vibrissa follicle relationship: has_part UBERON:0034941 ! blood sinus of vibrissa @@ -235381,6 +236993,7 @@ synonym: "Zuckerkandl's body" RELATED [http://en.wikipedia.org/wiki/Aortic_body] xref: Aortic:body xref: http://www.snomedbrowser.com/Codes/Details/75061007 xref: NCIT:C97112 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: composed_primarily_of CL:0000197 ! sensory receptor cell @@ -235399,6 +237012,7 @@ xref: FMA:50848 xref: http://www.snomedbrowser.com/Codes/Details/181381004 xref: http://www.snomedbrowser.com/Codes/Details/80595007 xref: MESH:A08.800.550.700.120.600.350 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034979 ! nonchromaffin paraganglion relationship: part_of UBERON:0034980 {source="cjm"} ! jugular bulb @@ -235427,6 +237041,7 @@ relationship: capable_of GO:0009593 ! detection of chemical stimulus id: UBERON:0034980 name: jugular bulb synonym: "bulb of jugular vein" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001586 {source="FMA"} ! internal jugular vein @@ -235530,6 +237145,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1971 xref: MA:0002918 xref: PBA:10140 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001876 {source="MA"} ! amygdala [Term] @@ -235574,6 +237190,7 @@ name: jaw mesenchyme def: "Mesenchyme that is part of a developing jaw [Automatically generated definition]." [OBOL:automatic] xref: EMAPA:32907 xref: EMAPA:35454 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005253 ! head mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0011595 ! jaw region @@ -235637,6 +237254,7 @@ relationship: part_of UBERON:0002891 {source="EMAPA"} ! cortical amygdaloid nucl id: UBERON:0035004 name: preputial swelling xref: EMAPA:35702 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005876 {source="EMAPA"} ! undifferentiated genital tubercle @@ -235707,6 +237325,7 @@ xref: EMAPA:35852 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1821 xref: MA:0000943 xref: MBA:541 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035015 ! association cortex intersection_of: UBERON:0035015 ! association cortex intersection_of: part_of UBERON:0016538 ! temporal cortex @@ -235835,6 +237454,7 @@ name: amygdalohippocampal transition area synonym: "AHTA" RELATED ABBREVIATION [DHBA:10380] xref: DHBA:10380 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] @@ -235844,6 +237464,7 @@ synonym: "AHiAm" RELATED ABBREVIATION [HBA:265504452] xref: HBA:265504452 xref: PBA:10136 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] @@ -235853,6 +237474,7 @@ synonym: "AHiAp" RELATED ABBREVIATION [HBA:265504456] xref: HBA:265504456 xref: PBA:10137 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034673 ! amygdalohippocampal area [Term] @@ -235905,6 +237527,7 @@ synonym: "carpal canal" EXACT [FMA:42352] synonym: "carpel tunnel" RELATED [http://en.wikipedia.org/wiki/Carpal_tunnel] xref: Carpal:tunnel xref: FMA:42352 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0001148 ! median nerve @@ -235953,6 +237576,7 @@ xref: FMA:49742 xref: http://en.wikipedia.org/wiki/Deep_temporal_arteries xref: http://www.snomedbrowser.com/Codes/Details/147965009 is_a: UBERON:0001632 ! temporal artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001632 ! temporal artery intersection_of: part_of UBERON:0035551 ! deep vasculature relationship: branching_part_of UBERON:0001616 {source="FMA"} ! maxillary artery @@ -235969,6 +237593,7 @@ xref: http://en.wikipedia.org/wiki/Middle_temporal_artery xref: http://www.snomedbrowser.com/Codes/Details/146854006 is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: branching_part_of UBERON:0001614 {source="FMA"} ! superficial temporal artery relationship: connected_to UBERON:0001627 {subset="human_reference_atlas"} ! middle cerebral artery relationship: part_of UBERON:0001614 ! superficial temporal artery @@ -235981,6 +237606,7 @@ synonym: "temporal artery" BROAD [AAO:0010495] xref: AAO:0010495 is_a: UBERON:0001632 ! temporal artery is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0014770 ! palpebral artery relationship: branching_part_of UBERON:3010494 ! lateral pretrosal artery relationship: part_of UBERON:3010494 ! lateral pretrosal artery @@ -236069,6 +237695,7 @@ name: duct of eccrine sweat gland synonym: "ductal part of eccrine sweat gland" EXACT [FMA:70617] xref: FMA:70617 is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000423 ! eccrine sweat gland relationship: part_of UBERON:0000423 ! eccrine sweat gland @@ -236079,6 +237706,7 @@ name: duct of apocrine sweat gland synonym: "ductal part of apocrine sweat gland" EXACT [FMA:70643] xref: FMA:70643 is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0000382 ! apocrine sweat gland relationship: part_of UBERON:0000382 ! apocrine sweat gland @@ -236089,6 +237717,7 @@ name: thymus subunit synonym: "lobe or lobule of thymus" RELATED [] xref: FMA:71193 is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000063 ! organ subunit intersection_of: part_of UBERON:0002046 ! thyroid gland relationship: part_of UBERON:0002046 ! thyroid gland @@ -236216,6 +237845,7 @@ id: UBERON:0035088 name: vertebral fracture plane def: "A plane of autotomy that divides an appendage through a vertebral bone." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] synonym: "plane of autotomy bisecting vertebral bone" EXACT [http://orcid.org/0000-0002-6601-2165] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0035087 ! fracture plane [Term] @@ -236228,6 +237858,7 @@ is_a: UBERON:0035086 ! plane of autotomy id: UBERON:0035090 name: plane of autotomy bisecting intervertebral joint def: "A plane of autotomy that divides an appendage in the space between vertebrae." [http://en.wikipedia.org/wiki/Autotomy, http://orcid.org/0000-0002-6601-2165] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0035089 ! plane of autotomy bisecting joint [Term] @@ -236371,6 +238002,7 @@ name: raphe of penis synonym: "penile raphe" EXACT [FMA:19646] synonym: "raphe penis" EXACT LATIN [FMA:19646, FMA:TA] xref: FMA:19646 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034929 ! external soft tissue zone intersection_of: UBERON:0034929 ! external soft tissue zone @@ -236390,6 +238022,7 @@ synonym: "scrotal sac" EXACT [FMA:18251] synonym: "testis comartment" EXACT [] xref: FMA:18251 is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure relationship: has_component UBERON:0000473 {minCardinality="1", maxCardinality="1"} ! testis relationship: part_of UBERON:0001300 ! scrotum @@ -236574,6 +238207,7 @@ def: "Lateral walls of the oropharynx that are located medial to the palatogloss xref: FMA:55019 xref: http://www.snomedbrowser.com/Codes/Details/361362001 is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001729 ! oropharynx [Term] @@ -236584,6 +238218,7 @@ synonym: "incisive suture" RELATED [FMA:75777] synonym: "midline of hard palate" RELATED [] xref: FMA:75777 xref: http://www.snomedbrowser.com/Codes/Details/245781007 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4200215 ! suture relationship: intersects_midsagittal_plane_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -236595,6 +238230,7 @@ def: "Line of union, in the floor of the orbit, between the orbital process of t synonym: "palatomaxillary suture of skull" EXACT [FMA:52964] xref: FMA:52964 xref: Palatomaxillary:suture +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4200215 ! suture intersection_of: UBERON:4200215 ! suture intersection_of: connects UBERON:0001682 ! palatine bone @@ -236625,6 +238261,7 @@ name: transverse palatine suture def: "The line of junction between the processes of the maxilla and the horizontal parts of the palatine bones that form the hard palate." [http://medical-dictionary.thefreedictionary.com/transverse+palatine+suture] synonym: "transverse palatine suture of skull" EXACT [FMA:52971] xref: FMA:52971 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4200215 ! suture intersection_of: UBERON:4200215 ! suture intersection_of: connects UBERON:0002397 ! maxilla @@ -236639,6 +238276,7 @@ name: suture of hard palate def: "Any of the sutures of the hard palate." [http://www.merriam-webster.com/medical/palatine%20suture] synonym: "palatine suture" EXACT [http://www.merriam-webster.com/medical/palatine%20suture] is_a: UBERON:0003685 ! cranial suture +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0003685 ! cranial suture intersection_of: part_of UBERON:0003216 ! hard palate relationship: part_of UBERON:0003216 ! hard palate @@ -236648,7 +238286,6 @@ id: UBERON:0035128 name: manus cartilage element synonym: "hand cartilage condensation" EXACT [EMAPA:32631] xref: EMAPA:32631 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010883 ! forelimb cartilage element is_a: UBERON:0015064 ! autopod cartilage intersection_of: UBERON:0015063 ! autopod endochondral element @@ -236663,7 +238300,6 @@ id: UBERON:0035129 name: pes cartilage element synonym: "foot cartilage condensation" EXACT [EMAPA:32657] xref: EMAPA:32657 -is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010885 ! hindlimb cartilage element is_a: UBERON:0015064 ! autopod cartilage intersection_of: UBERON:0015063 ! autopod endochondral element @@ -236738,6 +238374,7 @@ synonym: "anterior nasal spine" RELATED [] synonym: "spina nasalis anterior corporis maxillae" EXACT LATIN [FMA:75770, FMA:TA] xref: FMA:75770 xref: http://en.wikipedia.org/wiki/Anterior_nasal_spine +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -236766,6 +238403,7 @@ name: preputial space def: "Space between the prepuce and glans penis or clitoris." [http://orcid.org/0000-0002-6601-2165] synonym: "preputial cavity" EXACT [FMA:28606] xref: FMA:28606 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0011374 ! prepuce @@ -236821,6 +238459,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:0035149 name: gingival epithelial attachment xref: http://www.snomedbrowser.com/Codes/Details/85036004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007651 ! anatomical junction relationship: located_in UBERON:0008805 ! gingival groove relationship: part_of UBERON:0001949 ! gingival epithelium @@ -237039,6 +238678,7 @@ xref: FMA:9397 xref: http://linkedlifedata.com/resource/umls/id/C0227190 xref: http://www.snomedbrowser.com/Codes/Details/245407007 xref: NCIT:C12252 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus @@ -237078,6 +238718,7 @@ xref: FMA:75348 xref: http://linkedlifedata.com/resource/umls/id/C1519951 xref: http://www.snomedbrowser.com/Codes/Details/188958004 xref: NCIT:C34326 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space relationship: part_of UBERON:0004754 ! foramen ovale of heart @@ -237184,6 +238825,7 @@ xref: http://en.wikipedia.org/wiki/Base_of_the_heart xref: http://linkedlifedata.com/resource/umls/id/C0225810 xref: http://www.snomedbrowser.com/Codes/Details/277701000 xref: NCIT:C48589 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0000948 ! heart @@ -237199,6 +238841,7 @@ xref: FMA:9396 xref: http://linkedlifedata.com/resource/umls/id/C0227188 xref: http://www.snomedbrowser.com/Codes/Details/245406003 xref: NCIT:C12251 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus @@ -237251,6 +238894,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0229881 xref: http://www.snomedbrowser.com/Codes/Details/362596009 xref: NCIT:C12235 xref: Tonsillar:fossa +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002372 ! tonsil @@ -237293,6 +238937,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/360629008 xref: NCIT:C32837 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0005396 ! carotid artery segment +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0005396 ! carotid artery segment intersection_of: branching_part_of UBERON:0001532 ! internal carotid artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery @@ -237306,6 +238951,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227155 xref: http://www.snomedbrowser.com/Codes/Details/276960004 xref: NCIT:C12240 is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_posterior_side_of UBERON:0001729 ! oropharynx intersection_of: part_of UBERON:0001729 ! oropharynx @@ -237322,6 +238968,7 @@ xref: FMA:15717 xref: http://linkedlifedata.com/resource/umls/id/C0227427 xref: http://www.snomedbrowser.com/Codes/Details/245447000 xref: NCIT:C32070 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000159 ! anal canal @@ -237405,6 +239052,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227546 xref: http://www.snomedbrowser.com/Codes/Details/245394007 xref: NCIT:C32649 is_a: UBERON:0001560 ! neck of organ +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0001560 ! neck of organ intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 ! gall bladder @@ -237423,6 +239071,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225492 xref: http://www.snomedbrowser.com/Codes/Details/179268001 xref: NCIT:C12242 is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0001728 ! nasopharynx [Term] @@ -237476,6 +239125,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227156 xref: http://www.snomedbrowser.com/Codes/Details/362125007 xref: NCIT:C12239 is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_lateral_side_of UBERON:0001729 ! oropharynx @@ -237538,6 +239188,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0230049 xref: http://www.snomedbrowser.com/Codes/Details/139784008 xref: NCIT:C45911 xref: Tuberculum:sellae +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0003689 {source="FMA"} ! sella turcica @@ -237580,6 +239231,7 @@ xref: FMA:19596 xref: http://linkedlifedata.com/resource/umls/id/C0227962 xref: http://www.snomedbrowser.com/Codes/Details/279698000 xref: NCIT:C13090 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region relationship: part_of UBERON:0002367 ! prostate gland @@ -237608,6 +239260,7 @@ xref: FMA:19583 xref: http://linkedlifedata.com/resource/umls/id/C0227963 xref: http://www.snomedbrowser.com/Codes/Details/279682007 xref: NCIT:C13086 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003893 ! capsule is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0003893 ! capsule @@ -237668,6 +239321,7 @@ xref: FMA:19595 xref: http://linkedlifedata.com/resource/umls/id/C0227958 xref: http://www.snomedbrowser.com/Codes/Details/279702001 xref: NCIT:C13088 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland @@ -237715,6 +239369,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/314302003 xref: NCIT:C33114 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001627 ! middle cerebral artery relationship: branching_part_of UBERON:0001627 ! middle cerebral artery @@ -237761,6 +239416,7 @@ xref: FMA:15589 xref: http://linkedlifedata.com/resource/umls/id/C0227609 xref: http://www.snomedbrowser.com/Codes/Details/279375001 xref: NCIT:C32107 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region disjoint_from: UBERON:0035471 {source="lexical"} ! posterior surface of kidney relationship: part_of UBERON:0002113 {source="ncithesaurus"} ! kidney @@ -237805,6 +239461,7 @@ xref: Houston:valve xref: http://linkedlifedata.com/resource/umls/id/C0227403 xref: http://www.snomedbrowser.com/Codes/Details/259687002 xref: NCIT:C33807 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001052 {source="ncithesaurus"} ! rectum @@ -237819,6 +239476,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/314304002 xref: NCIT:C32082 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001624 ! anterior cerebral artery disjoint_from: UBERON:0035508 {source="lexical"} ! branch of posterior cerebral artery @@ -237834,6 +239492,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225486 xref: http://www.snomedbrowser.com/Codes/Details/361937006 xref: NCIT:C12244 is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0015212 ! lateral structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_lateral_side_of UBERON:0001728 ! nasopharynx @@ -237893,6 +239552,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0447038 xref: http://www.snomedbrowser.com/Codes/Details/244216003 xref: NCIT:C32552 is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0001637 ! artery intersection_of: branching_part_of UBERON:0001070 ! external carotid artery relationship: branching_part_of UBERON:0001070 ! external carotid artery @@ -237907,6 +239567,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225484 xref: http://www.snomedbrowser.com/Codes/Details/361936002 xref: NCIT:C12243 is_a: UBERON:0000328 ! gut wall +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: in_posterior_side_of UBERON:0001728 ! nasopharynx intersection_of: part_of UBERON:0001728 ! nasopharynx @@ -237935,6 +239596,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/303427008 xref: NCIT:C33678 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035403 ! hypophysial artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -237965,6 +239627,8 @@ xref: FMA:78540 xref: http://linkedlifedata.com/resource/umls/id/C0228123 xref: http://www.snomedbrowser.com/Codes/Details/32967008 xref: NCIT:C32459 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater @@ -238005,6 +239669,8 @@ xref: http://linkedlifedata.com/resource/umls/id/C0228122 xref: http://www.snomedbrowser.com/Codes/Details/280380009 xref: NCIT:C32584 is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002363 ! dura mater relationship: part_of UBERON:0010506 {source="ncithesaurus"} ! meningeal dura mater @@ -238029,6 +239695,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0225789 xref: http://www.snomedbrowser.com/Codes/Details/362002008 xref: Mediastinal:pleura xref: NCIT:C94820 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: has_part UBERON:0003728 {source="FMA"} ! mediastinum relationship: part_of UBERON:0002400 {source="FMA"} ! parietal pleura @@ -238071,6 +239738,7 @@ xref: FMA:19594 xref: http://linkedlifedata.com/resource/umls/id/C0227959 xref: http://www.snomedbrowser.com/Codes/Details/279703006 xref: NCIT:C13087 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point relationship: part_of UBERON:0002367 {source="ncithesaurus"} ! prostate gland @@ -238081,6 +239749,7 @@ synonym: "triangular ligament" BROAD [FMA:15821] xref: FMA:15821 xref: http://www.snomedbrowser.com/Codes/Details/279968005 is_a: UBERON:0000211 ! ligament +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0002107 ! liver @@ -238110,6 +239779,7 @@ xref: FMA:9395 xref: http://linkedlifedata.com/resource/umls/id/C0227186 xref: http://www.snomedbrowser.com/Codes/Details/245405004 xref: NCIT:C12250 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013522 ! subdivision of tube relationship: part_of UBERON:0001043 {source="FMA"} ! esophagus @@ -238122,6 +239792,7 @@ xref: FMA:64171 xref: http://linkedlifedata.com/resource/umls/id/C0225566 xref: http://www.snomedbrowser.com/Codes/Details/361949007 xref: NCIT:C32935 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001737 {source="ncithesaurus"} ! larynx @@ -238149,6 +239820,7 @@ xref: http://linkedlifedata.com/resource/umls/id/C0227844 xref: http://www.snomedbrowser.com/Codes/Details/362257002 xref: NCIT:C32514 xref: Uterine:cavity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: adjacent_to UBERON:0001295 ! endometrium @@ -238168,6 +239840,7 @@ xref: FMA:11355 xref: http://linkedlifedata.com/resource/umls/id/C0230151 xref: http://www.snomedbrowser.com/Codes/Details/46297007 xref: NCIT:C32393 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0001103 {source="ncithesaurus"} ! diaphragm @@ -238180,6 +239853,7 @@ xref: FMA:15590 xref: http://linkedlifedata.com/resource/umls/id/C0227610 xref: http://www.snomedbrowser.com/Codes/Details/279376000 xref: NCIT:C32895 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0002113 ! kidney @@ -238232,6 +239906,7 @@ xref: FMA:19590 xref: http://linkedlifedata.com/resource/umls/id/C0426735 xref: http://www.snomedbrowser.com/Codes/Details/279694003 xref: NCIT:C13091 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036215 ! anatomical surface region intersection_of: UBERON:0036215 ! anatomical surface region intersection_of: bounding_layer_of UBERON:0002367 ! prostate gland @@ -238281,6 +239956,7 @@ xref: http://www.snomedbrowser.com/Codes/Details/303428003 xref: NCIT:C32777 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0035403 ! hypophysial artery relationship: branching_part_of UBERON:0001532 ! internal carotid artery relationship: part_of UBERON:0001532 ! internal carotid artery @@ -238296,6 +239972,7 @@ xref: FMA:62842 xref: http://linkedlifedata.com/resource/umls/id/C0229703 xref: http://www.snomedbrowser.com/Codes/Details/327052008 xref: NCIT:C33031 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004885 ! hilum intersection_of: UBERON:0004885 ! hilum intersection_of: part_of UBERON:0000029 ! lymph node @@ -238309,6 +239986,7 @@ xref: FMA:16518 xref: http://linkedlifedata.com/resource/umls/id/C0230231 xref: http://www.snomedbrowser.com/Codes/Details/260725009 xref: NCIT:C32670 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element is_a: UBERON:0008845 ! nonskeletal ligament intersection_of: UBERON:0008845 ! nonskeletal ligament @@ -238478,6 +240156,7 @@ xref: http://en.wikipedia.org/wiki/Body_of_gallbladder xref: http://linkedlifedata.com/resource/umls/id/C0227545 xref: http://www.snomedbrowser.com/Codes/Details/245392006 xref: NCIT:C32647 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder @@ -239026,10 +240705,9 @@ synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "ophthalmic part of trigeminal ganglion" RELATED [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0000033 ! head relationship: develops_from UBERON:0000153 ! anterior region of body -relationship: develops_from UBERON:0003070 ! trigeminal placode complex relationship: develops_from UBERON:0007811 ! craniocervical region relationship: develops_from UBERON:0013701 ! main body axis relationship: develops_from UBERON:0013702 ! body proper @@ -239045,10 +240723,9 @@ synonym: "maxillomandibular part of trigeminal ganglion" RELATED [] synonym: "ophthalmic ganglion" NARROW SENSU [] synonym: "profundal ganglion" NARROW SENSU [] is_a: UBERON:0001714 ! cranial ganglion -is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: develops_from UBERON:0000033 ! head relationship: develops_from UBERON:0000153 ! anterior region of body -relationship: develops_from UBERON:0003070 ! trigeminal placode complex relationship: develops_from UBERON:0007811 ! craniocervical region relationship: develops_from UBERON:0013701 ! main body axis relationship: develops_from UBERON:0013702 ! body proper @@ -239093,6 +240770,7 @@ synonym: "cartilage of auditory canal" EXACT [FMA:61298] synonym: "cartilago meatus acustici" EXACT [FMA:TA] synonym: "external acoustic meatus cartilage" EXACT [FMA:61298] xref: FMA:61298 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0034944 ! zone of organ intersection_of: UBERON:0034944 ! zone of organ intersection_of: part_of UBERON:0001352 ! external acoustic meatus @@ -239119,6 +240797,7 @@ comment: Louveau et al (DOI:10.1038/nature14432) claim the discovery of lymphati synonym: "dural lymph vasculature" RELATED [] synonym: "dural lymph vessel" EXACT [] is_a: UBERON:0001473 ! lymphatic vessel +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: located_in UBERON:0002363 ! dura mater relationship: located_in UBERON:0002363 ! dura mater @@ -239129,6 +240808,8 @@ id: UBERON:0035609 name: outer root sheath companion layer def: "The innermost layer of the outer root sheath." [http://www.keratin.com/aa/aa022.shtml#03] xref: BTO:0003970 +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013754 ! integumentary system layer relationship: part_of UBERON:0005942 {source="BTO"} ! hair outer root sheath @@ -239137,6 +240818,7 @@ id: UBERON:0035610 name: hair canal def: "Tubular connection between the epidermal surface and the most distal part of the inner root sheath. Contains the hair shaft." [https://doi.org/10.1016/j.cub.2008.12.005] is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0004111 ! anatomical conduit intersection_of: conduit_for UBERON:0002074 ! hair shaft intersection_of: connects UBERON:0001003 ! skin epidermis @@ -239167,6 +240849,7 @@ synonym: "nasal turbinal element" EXACT [] synonym: "nasal turbinate" EXACT [] synonym: "turbinal" EXACT [http://palaeos.com/vertebrates/bones/braincase/ethmoid.html] synonym: "turbinate" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element relationship: located_in UBERON:0001707 ! nasal cavity relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda @@ -239372,8 +241055,8 @@ relationship: innervates UBERON:0002411 ! clitoris id: UBERON:0035651 name: glans xref: http://en.wikipedia.org/wiki/Glans -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure union_of: UBERON:0001299 ! glans penis union_of: UBERON:0006653 ! glans clitoris @@ -239480,7 +241163,6 @@ synonym: "primary yolk sac space" EXACT [FMA:305888] xref: EHDAA2:0001503 xref: EMAPA:36039 xref: FMA:305888 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005251 ! yolk sac cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0008853 ! parietal yolk sac @@ -239575,6 +241257,7 @@ synonym: "heart cavity" EXACT [FMA:9464] synonym: "heart lumen" EXACT [EHDAA2:0004181] xref: EHDAA2:0004181 xref: FMA:9464 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0004151 ! cardiac chamber @@ -239868,6 +241551,7 @@ id: UBERON:0035806 name: Hensen stripe def: "The dark, nonstriated, V-shaped band (ridge) found on the underside of the tectorial membrane in the basal region of the cochlea, from which fine gelatinous trabeculae extend to fix the TM to the border cells, i.e. cells directly adjacent to the inner phalangeal cells." [MGI:anna] synonym: "Hensen's stripe" EXACT [MGI:anna] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="cjm"} ! acellular membrane relationship: adjacent_to UBERON:0002233 ! tectorial membrane of cochlea relationship: part_of UBERON:0001855 {source="cjm"} ! cochlear duct of membranous labyrinth @@ -239944,6 +241628,7 @@ def: "The part of the ventral body cavity that is within the abdominal segment o synonym: "cavitas abdominis et pelvis" EXACT LATIN [FMA:TA] xref: Abdominopelvic:cavity xref: FMA:12267 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0002417 ! abdominal segment of trunk @@ -240068,6 +241753,7 @@ synonym: "costal part of diaphragm" EXACT [FMA:58277] synonym: "pars costalis diaphragmatis" EXACT LATIN [FMA:TA] xref: FMA:58277 xref: http://www.snomedbrowser.com/Codes/Details/368048007 +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0000003 is_a: UBERON:0000063 ! organ subunit is_a: UBERON:0015212 ! lateral structure @@ -240141,6 +241827,7 @@ synonym: "apex of heart ventricle" RELATED [MA:0003017] synonym: "apical region of cardiac ventricle" EXACT [] xref: EMAPA:37425 {source="MA:th"} xref: MA:0003017 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002082 ! cardiac ventricle @@ -240259,6 +241946,7 @@ xref: FMA:53177 xref: http://www.snomedbrowser.com/Codes/Details/362642002 xref: Infraorbital:margin is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0035849 ! orbital margin [Term] @@ -240271,6 +241959,7 @@ synonym: "orbital rim" EXACT [http://www.medilexicon.com/medicaldictionary.php?t xref: FMA:53176 xref: http://www.snomedbrowser.com/Codes/Details/362641009 is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001697 ! orbit of skull relationship: surrounds UBERON:0004867 ! orbital cavity @@ -240449,6 +242138,7 @@ name: dorsal auditory area synonym: "AUDd" RELATED ABBREVIATION [MBA:1011] xref: MBA:1011 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001393 {source="MBA"} ! auditory cortex [Term] @@ -240457,6 +242147,7 @@ name: posterior parietal association areas synonym: "PTLp" RELATED ABBREVIATION [MBA:22] xref: MBA:22 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001950 {source="MBA"} ! neocortex [Term] @@ -240465,6 +242156,7 @@ name: postrhinal area synonym: "VISpor" RELATED ABBREVIATION [MBA:312782628] xref: MBA:312782628 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -240473,6 +242165,7 @@ name: primary visual area, layer 6a synonym: "VISp6a" RELATED ABBREVIATION [MBA:33] xref: MBA:33 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -240481,6 +242174,7 @@ name: anteromedial visual area synonym: "VISam" RELATED ABBREVIATION [MBA:394] xref: MBA:394 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -240489,6 +242183,7 @@ name: anterolateral visual area synonym: "VISal" RELATED ABBREVIATION [MBA:402] xref: MBA:402 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -240497,6 +242192,7 @@ name: lateral visual area synonym: "VISl" RELATED ABBREVIATION [MBA:409] xref: MBA:409 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -240505,6 +242201,7 @@ name: posterolateral visual area synonym: "VISpl" RELATED ABBREVIATION [MBA:425] xref: MBA:425 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -240513,6 +242210,7 @@ name: posteromedial visual area synonym: "VISpm" RELATED ABBREVIATION [MBA:533] xref: MBA:533 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000411 {source="MBA"} ! visual cortex [Term] @@ -240521,6 +242219,7 @@ name: primary visual area, layer 4 synonym: "VISp4" RELATED ABBREVIATION [MBA:721] xref: MBA:721 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -240529,6 +242228,7 @@ name: primary visual area, layer 5 synonym: "VISp5" RELATED ABBREVIATION [MBA:778] xref: MBA:778 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -240537,6 +242237,7 @@ name: primary visual area, layer 2/3 synonym: "VISp2/3" RELATED ABBREVIATION [MBA:821] xref: MBA:821 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002436 {source="MBA"} ! primary visual cortex [Term] @@ -240545,6 +242246,7 @@ name: anterolateral visual area, layer 5 synonym: "VISal5" RELATED ABBREVIATION [MBA:233] xref: MBA:233 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035894 {source="MBA"} ! anterolateral visual area [Term] @@ -240553,6 +242255,7 @@ name: posteromedial visual area, layer 6a synonym: "VISpm6a" RELATED ABBREVIATION [MBA:257] xref: MBA:257 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] @@ -240561,6 +242264,7 @@ name: postrhinal area, layer 4 synonym: "VISpor4" RELATED ABBREVIATION [MBA:312782640] xref: MBA:312782640 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035890 {source="MBA"} ! postrhinal area [Term] @@ -240569,6 +242273,7 @@ name: rostrolateral visual area synonym: "VISrl" RELATED ABBREVIATION [MBA:417] xref: MBA:417 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035886 {source="MBA"} ! posterior parietal association areas [Term] @@ -240577,6 +242282,7 @@ name: anteromedial visual area, layer 5 synonym: "VISam5" RELATED ABBREVIATION [MBA:433] xref: MBA:433 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035893 {source="MBA"} ! anteromedial visual area [Term] @@ -240585,6 +242291,7 @@ name: posteromedial visual area, layer 4 synonym: "VISpm4" RELATED ABBREVIATION [MBA:501] xref: MBA:501 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035900 {source="MBA"} ! posteromedial visual area [Term] @@ -240593,6 +242300,7 @@ name: lateral visual area, layer 4 synonym: "VISl4" RELATED ABBREVIATION [MBA:573] xref: MBA:573 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] @@ -240601,6 +242309,7 @@ name: lateral visual area, layer 5 synonym: "VISl5" RELATED ABBREVIATION [MBA:613] xref: MBA:613 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] @@ -240609,6 +242318,7 @@ name: dorsal auditory area, layer 4 synonym: "AUDd4" RELATED ABBREVIATION [MBA:678] xref: MBA:678 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035885 {source="MBA"} ! dorsal auditory area [Term] @@ -240617,6 +242327,7 @@ name: lateral visual area, layer 6a synonym: "VISl6a" RELATED ABBREVIATION [MBA:74] xref: MBA:74 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035895 {source="MBA"} ! lateral visual area [Term] @@ -240625,6 +242336,7 @@ name: posterolateral visual area, layer 4 synonym: "VISpl4" RELATED ABBREVIATION [MBA:869] xref: MBA:869 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035897 {source="MBA"} ! posterolateral visual area [Term] @@ -240633,6 +242345,7 @@ name: rostrolateral area, layer 5 synonym: "VISrl5" RELATED ABBREVIATION [MBA:312782616] xref: MBA:312782616 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0035912 {source="MBA"} ! rostrolateral visual area [Term] @@ -240780,6 +242493,7 @@ synonym: "PCLa" RELATED ABBREVIATION [HBA:4071] xref: FMA:273508 xref: HBA:4071 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0016525 {source="HBA"} ! frontal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule @@ -240807,6 +242521,7 @@ synonym: "posterior part of paracentral lobule" EXACT [FMA:273511] xref: FMA:273511 xref: HBA:4125 is_a: UBERON:0002616 {source="HBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001872 {source="HBA"} ! parietal lobe relationship: part_of UBERON:0035933 {source="FMA"} ! paracentral lobule @@ -240893,6 +242608,7 @@ relationship: part_of UBERON:0002559 {source="HBA"} ! medullary reticular format id: UBERON:0035941 name: Kimura membrane def: "The thickening of the lower surface of the tectorial membrane into which the hair bundles of the outer hair cells are embedded." [http://www.ncbi.nlm.nih.gov/pubmed/18797289, https://github.com/obophenotype/mammalian-phenotype-ontology/issues/2141, https://github.com/obophenotype/uberon/issues/1200, MGI:smith] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 {source="cjm"} ! acellular membrane relationship: part_of UBERON:0002233 ! tectorial membrane of cochlea @@ -240901,6 +242617,7 @@ id: UBERON:0035942 name: space between upper and lower jaws def: "The space between the upper jaw skeleton and lower jaw skeleton (including teeth) that is formed when when biting." [UBERON:cjm] synonym: "bite" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0003277 ! skeleton of upper jaw relationship: adjacent_to UBERON:0003278 ! skeleton of lower jaw @@ -240969,6 +242686,7 @@ synonym: "epididymis lumen" EXACT [FMA:18274] synonym: "lumen of epididymis" EXACT [FMA:18274] xref: FMA:18274 xref: http://www.snomedbrowser.com/Codes/Details/367722009 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: luminal_space_of UBERON:0001301 ! epididymis @@ -240980,6 +242698,8 @@ relationship: part_of UBERON:0001301 ! epididymis id: UBERON:0035957 name: antotic pillar def: "The posteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen @@ -240987,6 +242707,8 @@ relationship: part_of UBERON:0005745 ! optic foramen id: UBERON:0035958 name: preoptic pillar def: "The anteriormost orbital pillar, in front of the otic capsule." [ISBN:978-0226870137] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0035959 ! orbital pillar relationship: part_of UBERON:0005745 ! optic foramen @@ -241022,6 +242744,7 @@ def: "Supravaginal portion of cervix: the part of the cervix uteri that does not synonym: "portio supravaginalis cervicis" EXACT LATIN [FMA:TA] xref: BTO:0001851 xref: FMA:77055 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000002 {source="FMA"} ! uterine cervix @@ -241033,6 +242756,7 @@ def: "Epithelial lining fluid forms a thin fluid layer that covers the mucosa of synonym: "ELF" RELATED [BTO:0005566] xref: BTO:0005566 xref: FMA:276456 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006314 ! bodily fluid relationship: part_of UBERON:0002299 ! alveolus of lung relationship: produced_by UBERON:0035967 ! alveolar mucosa @@ -241077,6 +242801,7 @@ xref: BTO:0004277 xref: FMA:58371 xref: http://www.snomedbrowser.com/Codes/Details/281086001 is_a: UBERON:0004923 {source="FMA"} ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001773 {source="BTO"} ! sclera [Term] @@ -241136,6 +242861,7 @@ xref: FMA:83707 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=210 xref: http://www.snomedbrowser.com/Codes/Details/369271006 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002285 ! telencephalic ventricle relationship: part_of UBERON:0002421 {source="BTO"} ! hippocampal formation @@ -241149,6 +242875,7 @@ xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=1105 xref: MBA:1037 xref: NLX:144245 is_a: UBERON:0002616 {source="MBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0022230 {source="MBA"} ! retrohippocampal region [Term] @@ -241599,7 +243326,7 @@ id: UBERON:0036073 name: respiratory primordium mesenchyme synonym: "respiratory primordium associated mesenchyme" EXACT [EHDAA2:0004071] xref: EHDAA2:0004071 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0008947 ! respiratory primordium @@ -241614,6 +243341,7 @@ synonym: "vena aqueductus vestibuli" EXACT LATIN [FMA:TA] synonym: "vestibular aqueduct vein" EXACT [FMA:52367] xref: FMA:52367 is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0009141 ! craniocervical region vein relationship: part_of UBERON:0001641 ! transverse sinus relationship: part_of UBERON:0007160 ! inferior petrosal sinus @@ -241643,6 +243371,7 @@ def: "An infrequent rudimentary duct, or protrusion of the mucous membrane into comment: Taxon notes notes: In domestic mammals the Ductus incisivus is considerably better developed than in man. It is not accommodated in a Canalis incisivus, as in man, but in the Fissura palatina[NOMINA ANATOMICA VETERINARIA (2005)] synonym: "ductus incisivus" EXACT LATIN [FMA:TA] xref: FMA:77282 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013686 {source="FMA"} ! anatomical conduit space relationship: part_of UBERON:0006672 ! incisive canal @@ -241651,6 +243380,7 @@ id: UBERON:0036145 name: glymphatic system def: "Macroscopic waste clearance system that utilizes a unique system of perivascular tunnels, formed by astroglial cells, to promote efficient elimination of soluble proteins and metabolites from the central nervous system." [https://doi.org/10.1007/s11064-015-1581-6, https://github.com/obophenotype/uberon/issues/1260, MGI:sbello] xref: EMAPA:37872 {source="MA:th"} +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0001016 ! nervous system @@ -241701,8 +243431,8 @@ def: "An organ subunit in the skin that gives rise to cutaneous appendage." [htt synonym: "cutaneous appendage follicle" EXACT [] synonym: "follicle" BROAD [] synonym: "skin follicle" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_potential_to_develop_into UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0000014 ! zone of skin @@ -241768,6 +243498,7 @@ synonym: "limen insula" RELATED [NeuroNames:2072] xref: DHBA:12166 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=2072 is_a: UBERON:0002616 {source="DHBA"} ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0034773 {source="DHBA"} ! uncus of parahippocampal gyrus [Term] @@ -241777,6 +243508,7 @@ def: "Sattler's layer is layer of medium diameter blood vessels of the choroid." comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. xref: Sattler%27s:layer is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] @@ -241784,6 +243516,7 @@ id: UBERON:0036168 name: Haller's layer comment: Some authors consider the vascular region of the choroid as being two separate layers, namely the Sattler's and Haller's layers, and some consider the lamina fusca as being either of scleral or choroidal origin. is_a: UBERON:0004923 ! organ component layer +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0013399 ! blood vessel layer of choroid [Term] @@ -241889,6 +243622,7 @@ synonym: "sulcus auriculae anterior" RELATED [http://en.wikipedia.org/wiki/Incis xref: FMA:61175 xref: http://en.wikipedia.org/wiki/Incisura_anterior_auris xref: http://www.snomedbrowser.com/Codes/Details/362542005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006846 ! surface groove intersection_of: UBERON:0006846 ! surface groove intersection_of: adjacent_to UBERON:0010887 ! tragus @@ -242039,6 +243773,7 @@ synonym: "lactiferous gland parenchyma" EXACT [] synonym: "mammary gland parenchyma" EXACT [] synonym: "parenchyma of lactiferous gland" EXACT [] is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001911 ! mammary gland relationship: part_of UBERON:0001911 ! mammary gland @@ -242106,6 +243841,7 @@ id: UBERON:0036250 name: zone of basilar membrane of cochlea synonym: "zone of organ of corti" RELATED [] xref: http://www.snomedbrowser.com/Codes/Details/361065006 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005764 ! acellular membrane intersection_of: UBERON:0005764 ! acellular membrane intersection_of: part_of UBERON:0002226 ! basilar membrane of cochlea @@ -242140,6 +243876,7 @@ synonym: "piriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasa synonym: "pyriform aperture" RELATED [http://en.wikipedia.org/wiki/Anterior_nasal_aperture] xref: FMA:53137 xref: http://en.wikipedia.org/wiki/Anterior_nasal_aperture +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0036253 ! orifice of skull relationship: part_of UBERON:0006813 ! nasal skeleton @@ -242188,6 +243925,7 @@ name: uterine ligament def: "Any of the eight ligaments pertaining to the uterus including the anterior, posterior, lateral, sacro-uterine and round ligaments." [NCIT:C61360] xref: http://www.snomedbrowser.com/Codes/Details/272668006 xref: NCIT:C61360 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000211 ! ligament is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000211 ! ligament @@ -242227,6 +243965,7 @@ id: UBERON:0036265 name: conjunctival papilla synonym: "conjunctival papillae" EXACT PLURAL [] xref: http://www.snomedbrowser.com/Codes/Details/280681004 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:2001995 ! papilla intersection_of: UBERON:2001995 ! papilla intersection_of: part_of UBERON:0001811 ! conjunctiva @@ -242239,6 +243978,7 @@ def: "The part of vertebra located between the inferior and superior articular p synonym: "pars interarticularis" EXACT [] xref: http://www.snomedbrowser.com/Codes/Details/705098005 xref: Pars:interarticularis +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004765 ! skeletal element relationship: part_of UBERON:0002412 ! vertebra @@ -242288,6 +244028,7 @@ relationship: part_of RO:0002577 ! system id: UBERON:0036271 name: omphalopleure def: "A fetal membrane, part of the yolk sac, that appears during some placentation processes." [BGEE:ANiknejad, http://www.ncbi.nlm.nih.gov/pubmed/10761048, http://www.ncbi.nlm.nih.gov/pubmed/29416852, https://github.com/obophenotype/uberon/issues/1426] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000158 ! membranous layer relationship: only_in_taxon NCBITaxon:9347 ! Eutheria relationship: part_of UBERON:0001040 ! yolk sac @@ -242386,6 +244127,7 @@ synonym: "uterine adnexa" EXACT [FMA:265256] xref: FMA:265256 xref: http://en.wikipedia.org/wiki/Adnexa_of_uterus xref: http://www.snomedbrowser.com/Codes/Details/361373008 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000995 ! uterus @@ -242433,6 +244175,7 @@ xref: FMA:51892 xref: http://www.snomedbrowser.com/Codes/Details/731368004 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0009141 ! craniocervical region vein +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0001638 ! vein intersection_of: tributary_of UBERON:0001673 ! central retinal vein relationship: part_of UBERON:0001673 ! central retinal vein @@ -242443,6 +244186,7 @@ id: UBERON:0036301 name: vasculature of spleen xref: FMA:225251 xref: http://www.snomedbrowser.com/Codes/Details/297287005 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002201 ! vasculature of trunk is_a: UBERON:0006876 {source="FMA"} ! vasculature of organ intersection_of: UBERON:0002049 ! vasculature @@ -242460,6 +244204,7 @@ union_of: UBERON:0036303 ! vasculature of central nervous system id: UBERON:0036303 name: vasculature of central nervous system xref: FMA:259905 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0036302 ! vasculature of central nervous system plus retina intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0001017 ! central nervous system @@ -242502,6 +244247,7 @@ synonym: "gallbladder wall" EXACT [FMA:14657] xref: FMA:14657 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall is_a: UBERON:0003697 ! abdominal wall +is_a: UBERON:0004119 ! endoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002110 ! gall bladder relationship: part_of UBERON:0002110 {source="FMA"} ! gall bladder @@ -242533,6 +244279,7 @@ synonym: "anal canal wall" EXACT [FMA:15704] xref: FMA:15704 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall is_a: UBERON:0001169 ! wall of large intestine +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000159 ! anal canal intersection_of: part_of UBERON:0001007 ! digestive system @@ -242565,6 +244312,7 @@ name: wall of pulmonary artery synonym: "pulmonary arterial wall" EXACT [FMA:18211] xref: FMA:18211 is_a: UBERON:0000415 {source="FMA"} ! artery wall +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002012 ! pulmonary artery relationship: part_of UBERON:0002012 {source="FMA"} ! pulmonary artery @@ -242577,6 +244325,7 @@ synonym: "wall of fallopian tube" EXACT [FMA:18303] synonym: "wall of oviduct" EXACT [FMA:18303] xref: FMA:18303 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0003889 ! fallopian tube @@ -242588,6 +244337,7 @@ name: wall of urethra synonym: "urethral wall" EXACT [FMA:19779] xref: FMA:19779 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0000057 {source="FMA"} ! urethra @@ -242598,6 +244348,7 @@ name: wall of vagina synonym: "vaginal wall" EXACT [FMA:19971] xref: FMA:19971 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000996 ! vagina @@ -242649,6 +244400,7 @@ id: UBERON:0036657 name: wall of fourth ventricle xref: FMA:242778 is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0036661 ! wall of ventricular system of brain intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002422 ! fourth ventricle @@ -242660,6 +244412,7 @@ name: wall of central canal of spinal cord synonym: "wall of central canal" EXACT [FMA:242780] xref: FMA:242780 is_a: UBERON:0000060 ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005358 {source="FMA"} ! ventricle of nervous system intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002291 ! central canal of spinal cord @@ -242704,6 +244457,7 @@ synonym: "orbit wall" EXACT [FMA:63144] xref: FMA:63144 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0000075 {source="FMA"} ! subdivision of skeletal system +is_a: UBERON:0010313 ! neural crest-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001697 ! orbit of skull relationship: part_of UBERON:0001697 {source="FMA"} ! orbit of skull @@ -242714,6 +244468,7 @@ name: wall of common carotid artery synonym: "common carotid arterial wall" EXACT [FMA:66284] xref: FMA:66284 is_a: UBERON:0000415 {source="FMA"} ! artery wall +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001530 ! common carotid artery plus branches relationship: part_of UBERON:0001530 {source="FMA"} ! common carotid artery plus branches @@ -242740,6 +244495,7 @@ name: wall of membranous labyrinth synonym: "membranous labyrinth wall" EXACT [FMA:79837] xref: FMA:79837 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001849 ! membranous labyrinth relationship: part_of UBERON:0001849 {source="FMA"} ! membranous labyrinth @@ -242750,6 +244506,7 @@ name: wall of lacrimal duct synonym: "lacrimal ductal wall" EXACT [FMA:85375] xref: FMA:85375 is_a: UBERON:0000060 {source="FMA"} ! anatomical wall +is_a: UBERON:0004121 ! ectoderm-derived structure intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001850 ! lacrimal drainage system relationship: part_of UBERON:0001850 {source="FMA"} ! lacrimal drainage system @@ -244586,8 +246343,8 @@ xref: Melanocytic:nevus xref: MPATH:361 xref: TAO:0005043 xref: ZFA:0005043 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: has_part CL:0000148 ! melanocyte relationship: part_of UBERON:0002067 {source="ZFA"} ! dermis @@ -244609,6 +246366,7 @@ id: UBERON:1000012 name: nose anterior margin def: "Subdivision of the head consisting of the area along the front edge of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger @@ -244619,6 +246377,7 @@ id: UBERON:1000013 name: nose vertex def: "The extreme point of curvature of the external nose." [https://github.com/obophenotype/uberon/issues/34, UBERON:EJS] subset: phenotype_rcn +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0034929 ! external soft tissue zone property_value: dc-contributor https://github.com/cmungall property_value: dc-contributor https://github.com/seger @@ -244763,6 +246522,7 @@ xref: MA:0002487 xref: NCIT:C33603 xref: UMLS:C0229691 {source="ncithesaurus:Splenic_Pulp"} is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:1000024 {source="FMA"} ! parenchyma of spleen [Term] @@ -244772,6 +246532,7 @@ def: "A parenchyma that is part of a spleen." [OBOL:automatic] synonym: "splenic parenchyma" EXACT [FMA:16029] xref: FMA:16029 is_a: UBERON:0000353 ! parenchyma +is_a: UBERON:0004120 ! mesoderm-derived structure intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen @@ -244808,6 +246569,7 @@ relationship: part_of UBERON:0002540 ! lateral line system id: UBERON:1500005 name: ischial cartilage def: "Paired cartilaginous element forming the posterior portion of the pelvic girdle [D.F. Markle, BULLETIN OF MARINE SCIENCE. 30(1): 45-53. 1980]." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: develops_from UBERON:0006254 ! ischial cartilage element @@ -244867,6 +246629,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-9114-8737 id: UBERON:1600006 name: paired fin radial element def: "Radial element that is part of a paired fin." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:2100271 ! radial element intersection_of: UBERON:2100271 ! radial element intersection_of: part_of UBERON:0002534 ! paired fin @@ -244932,6 +246695,7 @@ id: UBERON:2000004 name: anterior axial hypoblast synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] xref: ZFA:0000004 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast @@ -245027,6 +246791,7 @@ name: neural plate proneural cluster synonym: "neural plate proneural clusters" EXACT PLURAL [TAO:0000068] synonym: "proneural cluster" RELATED [TAO:0000068] xref: ZFA:0000068 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate @@ -245252,6 +247017,7 @@ name: immature otolith def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)." [ZFIN:curator] synonym: "immature otoliths" EXACT PLURAL [TAO:0000139] is_a: UBERON:0003103 ! compound organ +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0003051 ! ear vesicle [Term] @@ -245300,7 +247066,6 @@ name: anterior macula def: "Macula that is located in the developing anterior inner ear, and gives rise to the macula utricle. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)." [ZFIN:curator] synonym: "am" EXACT [TAO:0000168] xref: ZFA:0000168 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2001096 ! immature anterior macula relationship: part_of UBERON:0002518 ! otolith organ @@ -245312,7 +247077,6 @@ def: "Replacement bone that is bilaterally paired and articulates dorsally with comment: It articulates ventrally with the posterior end of the posterior ceratohyal. synonym: "stylohyal bone" EXACT [TAO:0000171] is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001892 ! interhyal element relationship: develops_from UBERON:2001511 ! interhyal cartilage @@ -245384,6 +247148,7 @@ relationship: part_of UBERON:0000935 ! anterior commissure id: UBERON:2000187 name: lateral granular eminence is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000307 ! vestibulolateralis lobe [Term] @@ -245393,6 +247158,7 @@ synonym: "cerebellar corpus" EXACT [TAO:0000188] synonym: "corpus cerebellum" EXACT [TAO:0000188] xref: ZFA:0000188 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -245499,6 +247265,7 @@ id: UBERON:2000210 name: gigantocellular part of magnocellular preoptic nucleus xref: ZFA:0000210 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001928 ! preoptic area [Term] @@ -245507,6 +247274,8 @@ name: gill lamella synonym: "gill lamellae" EXACT PLURAL [TAO:0000211] xref: ZFA:0000211 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill [Term] @@ -245514,6 +247283,7 @@ id: UBERON:2000212 name: granular eminence xref: ZFA:0000212 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -245562,6 +247332,7 @@ id: UBERON:2000224 name: quadrate ventral process def: "Process that is the ventral, posteriorly-oriented bony extension of the quadrate." [TAO:wd] xref: ZFA:0001593 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone @@ -245628,7 +247399,6 @@ id: UBERON:2000234 name: macula neglecta def: "Macula positioned on the floor of the utricle adjacent to the utriculosaccular foramen at the base of the common crus." [ZFA:0000234] xref: ZFA:0000234 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2000558 ! posterior macula relationship: part_of UBERON:0002518 ! otolith organ @@ -245680,6 +247450,7 @@ relationship: part_of UBERON:0011085 ! palatoquadrate arch id: UBERON:2000241 name: midline column xref: ZFA:0000241 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -245721,7 +247492,6 @@ relationship: part_of UBERON:2001875 ! opercular series id: UBERON:2000251 name: adipose fin def: "A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin." [TAO:wd] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000162 ! median fin intersection_of: UBERON:0008897 ! fin intersection_of: has_skeleton UBERON:4500004 ! adipose fin skeleton @@ -245782,6 +247552,8 @@ id: UBERON:2000267 name: primary olfactory fiber layer xref: ZFA:0000267 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 ! olfactory bulb [Term] @@ -245846,6 +247618,7 @@ id: UBERON:2000280 name: medial division xref: ZFA:0000280 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -245985,6 +247758,7 @@ consider: ZFA:0000302 id: UBERON:2000305 name: ventral sulcus xref: ZFA:0000305 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove relationship: part_of UBERON:0001898 ! hypothalamus @@ -245993,6 +247767,7 @@ id: UBERON:2000307 name: vestibulolateralis lobe xref: ZFA:0000307 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -246001,6 +247776,7 @@ name: external yolk syncytial layer def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "E-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000309 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer @@ -246046,6 +247822,8 @@ id: UBERON:2000319 name: branchiostegal membrane xref: ZFA:0000319 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill [Term] @@ -246167,6 +247945,8 @@ id: UBERON:2000352 name: external cellular layer xref: ZFA:0000352 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 ! olfactory bulb [Term] @@ -246187,6 +247967,8 @@ id: UBERON:2000358 name: granular layer corpus cerebelli xref: ZFA:0000358 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli [Term] @@ -246202,7 +247984,6 @@ name: hypobranchial bone def: "Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] xref: ZFA:0000363 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001893 ! hypobranchial element relationship: develops_from UBERON:2001522 ! hypobranchial cartilage @@ -246307,6 +248088,7 @@ id: UBERON:2000388 name: medial caudal lobe xref: ZFA:0000388 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000307 ! vestibulolateralis lobe [Term] @@ -246342,6 +248124,8 @@ id: UBERON:2000394 name: molecular layer corpus cerebelli xref: ZFA:0000394 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli [Term] @@ -246430,6 +248214,7 @@ relationship: part_of UBERON:0001840 ! semicircular canal id: UBERON:2000414 name: presumptive cephalic mesoderm xref: ZFA:0000414 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000926 ! mesoderm @@ -246644,6 +248429,7 @@ name: Weberian ossicle def: "Bone that is an element associated with a Weberian vertebra." [ZFIN:curator] synonym: "Weberian ossicles" EXACT PLURAL [TAO:0000461] xref: ZFA:0000461 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000491 ! solid compound organ is_a: UBERON:0004765 ! skeletal element intersection_of: UBERON:0004765 ! skeletal element @@ -246734,6 +248520,7 @@ id: UBERON:2000479 name: caudal mesencephalo-cerebellar tract xref: ZFA:0000479 is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:2000318 ! brainstem and spinal white matter [Term] @@ -246785,7 +248572,6 @@ def: "Endochondral bone that is bilaterally paired and forms part of the ventral synonym: "ceratobranchials" EXACT PLURAL [TAO:0000488] xref: ZFA:0000488 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001898 ! ceratobranchial element relationship: develops_from UBERON:2001516 ! ceratobranchial cartilage @@ -246930,6 +248716,7 @@ id: UBERON:2000517 name: glossopharyngeal lobe xref: ZFA:0000517 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001896 ! medulla oblongata [Term] @@ -246984,7 +248771,6 @@ synonym: "infrapharyngobranchial bone" EXACT [] synonym: "pharyngobranchials" EXACT PLURAL [TAO:0000527] xref: ZFA:0000527 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001909 ! pharyngobranchial element relationship: develops_from UBERON:2001533 ! pharyngobranchial cartilage @@ -247009,6 +248795,7 @@ id: UBERON:2000532 name: lateral division xref: ZFA:0000532 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -247044,6 +248831,7 @@ replaced_by: ZFA:0000541 id: UBERON:2000542 name: medial column xref: ZFA:0000542 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002559 ! medullary reticular formation @@ -247052,6 +248840,7 @@ id: UBERON:2000544 name: pectoral fin actinotrichium def: "Actinotrichium that is part of the pectoral fin." [TAO:wd] xref: ZFA:0005545 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:2000089 ! actinotrichium intersection_of: UBERON:2000089 ! actinotrichium intersection_of: part_of UBERON:0000151 ! pectoral fin @@ -247113,7 +248902,6 @@ def: "Macula that is located in the developing posterior inner ear, and gives ri synonym: "pm" EXACT [TAO:0000558] synonym: "posteromedial macula" EXACT [TAO:0000558] xref: ZFA:0000558 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000054 ! macula relationship: develops_from UBERON:2001097 ! immature posterior macula @@ -247136,6 +248924,8 @@ id: UBERON:2000573 name: internal cellular layer xref: ZFA:0000573 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002264 ! olfactory bulb [Term] @@ -247179,6 +248969,7 @@ id: UBERON:2000582 name: saccus dorsalis xref: ZFA:0000582 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001899 ! epithalamus [Term] @@ -247219,7 +249010,9 @@ relationship: part_of UBERON:0003110 ! otic region id: UBERON:2000589 name: sulcus ypsiloniformis xref: ZFA:0000589 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0006846 ! surface groove +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0000203 ! pallium [Term] @@ -247256,6 +249049,7 @@ id: UBERON:2000596 name: pelvic fin actinotrichium def: "Actinotrichium that is part of the pelvic fin." [TAO:wd] xref: ZFA:0005546 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:2000089 ! actinotrichium intersection_of: UBERON:2000089 ! actinotrichium intersection_of: part_of UBERON:0000152 ! pelvic fin @@ -247303,6 +249097,7 @@ synonym: "valvula cerebellum" EXACT PLURAL [ZFA:0000603] xref: TAO:0000603 xref: ZFA:0000603 is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: only_in_taxon NCBITaxon:32443 {contributor="michaelerice", source="http://www.ncbi.nlm.nih.gov/pubmed/2040726"} ! Teleostei relationship: part_of UBERON:0002037 {source="ZFA"} ! cerebellum @@ -247345,6 +249140,7 @@ is_a: UBERON:2001089 ! myoseptum id: UBERON:2000611 name: visceromotor column xref: ZFA:0000611 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001896 ! medulla oblongata @@ -247509,6 +249305,8 @@ id: UBERON:2000636 name: cerebellar crest xref: ZFA:0000636 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000291 ! medial octavolateralis nucleus [Term] @@ -247643,7 +249441,6 @@ def: "Dorsal branchial arch bone that is bilaterally paired and articulates late synonym: "epibranchial bones" EXACT PLURAL [TAO:0000658] xref: ZFA:0000658 is_a: UBERON:0002513 ! endochondral bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001904 ! epibranchial element relationship: develops_from UBERON:2001527 ! epibranchial cartilage @@ -247850,6 +249647,7 @@ def: "Process that is the dorsally directed, vertical process of the entopterygo comment: Fink and Fink 1981, present in gymnotoids. synonym: "endopterygoid vertical strut" EXACT [TAO:0000699] synonym: "mesopterygoid vertical strut" EXACT [TAO:0000699] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000657 ! entopterygoid @@ -247903,6 +249701,7 @@ def: "A multilayer of deep cells of fairly uniform thickness that forms during e synonym: "DEL" EXACT ABBREVIATION [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT PLURAL [TAO:0000711] xref: ZFA:0000711 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004750 ! blastoderm @@ -247912,6 +249711,7 @@ name: internal yolk syncytial layer def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "I-YSL" EXACT [ZFIN:ZDB-PUB-961014-576] xref: ZFA:0000712 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer @@ -248263,6 +250063,8 @@ id: UBERON:2000766 name: granular layer valvula cerebelli xref: ZFA:0000766 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -248587,6 +250389,7 @@ id: UBERON:2000820 name: presumptive neuron neural tube synonym: "presumptive neurons neural tube" EXACT PLURAL [TAO:0000820] xref: ZFA:0000820 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001049 ! neural tube @@ -249117,6 +250920,7 @@ name: transverse process of neural arch 3 def: "Endochondral bone that is the anterodorsally oriented process of the third neural arch." [TAO:wd] synonym: "anterodorsal process of neural arch 3" EXACT [TAO:0000911] synonym: "transverse process of the third vertebra" EXACT [TAO:0000911] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001394 ! neural arch 3 @@ -249133,6 +250937,8 @@ id: UBERON:2000913 name: molecular layer valvula cerebelli xref: ZFA:0000913 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -249662,6 +251468,7 @@ relationship: part_of UBERON:2001013 ! myotome somite 10 id: UBERON:2000993 name: lateral wall neural rod xref: ZFA:0000993 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0005068 ! neural rod @@ -249884,6 +251691,7 @@ synonym: "hypurapophyses" EXACT PLURAL [TAO:0001028] synonym: "parhypurapophyses" EXACT [TAO:0001028] synonym: "parhypurapophyses processes" EXACT [TAO:0001028] xref: ZFA:0001028 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000438 ! parhypural @@ -250018,6 +251826,7 @@ synonym: "CaDI" EXACT [TAO:0001051] xref: ZFA:0001051 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001532 ! internal carotid artery [Term] @@ -250057,6 +251866,7 @@ is_a: UBERON:0001637 ! artery id: UBERON:2001055 name: pronephric duct opening xref: ZFA:0001055 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0003060 ! pronephric duct @@ -250080,6 +251890,7 @@ synonym: "rostral division of the internal carotid artery" EXACT [TAO:0001059] xref: ZFA:0001059 is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001532 ! internal carotid artery [Term] @@ -250144,6 +251955,7 @@ name: intestinal bulb def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] synonym: "anterior intestine" EXACT [TAO:0001076] xref: ZFA:0001076 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0000160 ! intestine @@ -250160,6 +251972,7 @@ is_obsolete: true id: UBERON:2001089 name: myoseptum xref: ZFA:0001089 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0003082 ! myotome @@ -250177,6 +251990,7 @@ synonym: "immature maculae" EXACT PLURAL [TAO:0001095] synonym: "immature sensory patch" EXACT [TAO:0001095] synonym: "immature sensory patches" EXACT [TAO:0001095] xref: ZFA:0001095 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003051 ! ear vesicle @@ -250259,6 +252073,7 @@ name: organizer inducing center def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] synonym: "Nieuwkoop center" EXACT [TAO:0001125] xref: ZFA:0001125 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2000088 ! yolk syncytial layer @@ -250544,6 +252359,7 @@ id: UBERON:2001181 name: epidermal intermediate stratum xref: ZFA:0001181 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001003 ! skin epidermis [Term] @@ -250552,6 +252368,7 @@ name: dermal superficial region synonym: "stratum laxum" EXACT [TAO:0001183] xref: ZFA:0001183 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] @@ -250561,6 +252378,7 @@ def: "A layer of collagen fibrils present in the imature integument in an acellu synonym: "primary dermal stroma" EXACT [TAO:0001186] xref: ZFA:0001186 is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] @@ -250569,6 +252387,7 @@ name: Weberian apparatus def: "Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear." [ZFIN:curator] comment: Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. xref: ZFA:0001188 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001130 ! vertebral column @@ -250633,6 +252452,7 @@ def: "Islands of eosinic cells found on the lateroventral surface of the kidney. xref: ZFA:0001200 is_a: UBERON:0000479 ! tissue is_a: UBERON:0002368 ! endocrine gland +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005172 ! abdomen element relationship: capable_of_part_of GO:0055074 ! calcium ion homeostasis relationship: only_in_taxon NCBITaxon:7898 {xref="http://jeb.biologists.org/content/177/1/243.short"} ! Actinopterygii @@ -250689,7 +252509,6 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001223 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001915 ! basibranchial 1 element intersection_of: UBERON:2001915 ! basibranchial 1 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -250703,7 +252522,6 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001224 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001916 ! basibranchial 2 element intersection_of: UBERON:2001916 ! basibranchial 2 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -250717,7 +252535,6 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001225 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001917 ! basibranchial 3 element intersection_of: UBERON:2001917 ! basibranchial 3 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -250731,7 +252548,6 @@ def: "Basibranchial bone that is ventral, median, and associated with branchial xref: ZFA:0001226 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001918 ! basibranchial 4 element intersection_of: UBERON:2001918 ! basibranchial 4 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -250990,6 +252806,8 @@ relationship: composed_primarily_of UBERON:2001547 ! abdominal scute id: UBERON:2001256 name: lateral floor plate xref: ZFA:0001256 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003079 ! floor plate @@ -250998,6 +252816,8 @@ id: UBERON:2001257 name: medial floor plate def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] xref: ZFA:0001257 +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003079 ! floor plate @@ -251071,6 +252891,7 @@ id: UBERON:2001277 name: anterior chamber swim bladder def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001277 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder @@ -251079,6 +252900,7 @@ id: UBERON:2001278 name: posterior chamber swim bladder def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001278 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0006860 ! swim bladder @@ -251303,6 +253125,7 @@ relationship: part_of UBERON:0003052 ! midbrain-hindbrain boundary id: UBERON:2001342 name: presumptive intervening zone xref: ZFA:0001342 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:2007023 ! posterior neural keel @@ -251310,6 +253133,7 @@ relationship: part_of UBERON:2007023 ! posterior neural keel id: UBERON:2001343 name: telencephalon diencephalon boundary xref: ZFA:0001343 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: part_of UBERON:0001890 ! forebrain @@ -251318,6 +253142,7 @@ id: UBERON:2001347 name: stratum fibrosum et griseum superficiale xref: ZFA:0001347 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -251325,6 +253150,7 @@ id: UBERON:2001348 name: stratum marginale xref: ZFA:0001348 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -251332,6 +253158,7 @@ id: UBERON:2001349 name: stratum opticum xref: ZFA:0001349 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -251339,6 +253166,7 @@ id: UBERON:2001352 name: stratum periventriculare xref: ZFA:0001352 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001945 ! superior colliculus [Term] @@ -251351,6 +253179,7 @@ id: UBERON:2001357 name: alar plate midbrain xref: ZFA:0001357 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001891 ! midbrain [Term] @@ -251382,6 +253211,7 @@ def: "Anatomical cluster that consists of supraneural 2 bone and supraneural 3 b synonym: "neural complex" BROAD [] synonym: "Weberian supraneural" EXACT [TAO:0001363] xref: ZFA:0001363 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:2001188 ! Weberian apparatus @@ -251438,6 +253268,7 @@ id: UBERON:2001382 name: epibranchial bone uncinate process def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] xref: ZFA:0001382 +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000658 ! epibranchial bone @@ -251447,6 +253278,7 @@ name: epithelial mesenchymal boundary of regenerating fin/limb def: "An epithelial-mesenchymal boundary that is part of a regenerating fin/limb." [OBOL:automatic] xref: TAO:0001388 xref: ZFA:0001388 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0012437 ! epithelial-mesenchymal boundary intersection_of: UBERON:0012437 ! epithelial-mesenchymal boundary intersection_of: part_of UBERON:2001269 ! regenerating fin/limb @@ -251466,6 +253298,7 @@ synonym: "wound epithelium of fin" EXACT [] xref: EFO:0003682 xref: TAO:0001389 xref: ZFA:0001389 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:2001269 ! regenerating fin/limb @@ -251607,6 +253440,7 @@ synonym: "epioccipital" EXACT [TAO:0001412] synonym: "epioccipitals" EXACT PLURAL [TAO:0001412] xref: ZFA:0001412 is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011164 ! neurocranium bone relationship: develops_from UBERON:0005410 ! cartilaginous otic capsule relationship: part_of UBERON:0002241 ! chondrocranium @@ -251719,6 +253553,7 @@ id: UBERON:2001430 name: pneumatic duct def: "A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001430 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003928 ! digestive system duct relationship: part_of UBERON:0001043 ! esophagus @@ -251726,8 +253561,8 @@ relationship: part_of UBERON:0001043 ! esophagus id: UBERON:2001431 name: primitive olfactory epithelium xref: ZFA:0001431 -is_a: UBERON:0000483 ! epithelium is_a: UBERON:0005291 ! embryonic tissue +is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:0003050 ! olfactory placode [Term] @@ -251749,6 +253584,7 @@ id: UBERON:2001437 name: ductus communicans def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006." [ZFIN:curator] xref: ZFA:0001437 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0006860 ! swim bladder @@ -251757,7 +253593,6 @@ id: UBERON:2001450 name: apical ectodermal ridge pelvic fin def: "Apical ectodermal ridge that is part of the pelvic fin." [ZFIN:curator] xref: ZFA:0001450 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004356 ! apical ectodermal ridge relationship: develops_from UBERON:0005422 ! pelvic appendage apical ectodermal ridge relationship: part_of UBERON:0000152 ! pelvic fin @@ -252220,6 +254055,7 @@ relationship: part_of UBERON:2001254 ! abdominal scute series id: UBERON:2001548 name: intercalarium ascending process xref: ZFA:0001602 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000525 ! intercalarium @@ -252355,6 +254191,7 @@ id: UBERON:2001577 name: premaxilla ascending process def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] xref: ZFA:0001577 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -252364,6 +254201,7 @@ name: anterior dorsomedial process of autopalatine def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [ZFIN:curator] xref: ZFA:0001578 is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:2000620 ! autopalatine [Term] @@ -252515,6 +254353,7 @@ def: "Process that is the upper portion of the maxilla that rests on the posteri comment: Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 synonym: "maxilla ascending arm" EXACT [TAO:0001603] synonym: "maxilla upper arm" EXACT [TAO:0001603] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -252544,7 +254383,9 @@ id: UBERON:2001607 name: basipterygoid process of parasphenoid def: "Process that is the paired process of the parasphenoid that articulates with the suspensorium." [TAO:wd] synonym: "basipterygoid process" EXACT [TAO:0001607] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004745 ! parasphenoid [Term] @@ -252563,6 +254404,7 @@ relationship: connects UBERON:2000620 ! autopalatine id: UBERON:2001609 name: pharyngobranchial 2 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 2 bone." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001250 ! pharyngobranchial 2 bone @@ -252572,6 +254414,7 @@ name: quadrate dorsal process def: "An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. synonym: "quadrate superior arm" EXACT [TAO:0001610] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone @@ -252580,6 +254423,7 @@ id: UBERON:2001611 name: quadrate posterodorsal process def: "Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006597 ! quadrate bone @@ -252626,6 +254470,7 @@ id: UBERON:2001615 name: sphenotic spine def: "Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired." [TAO:GA_TG] synonym: "sphenotic process" EXACT [TAO:0001615] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000587 ! sphenotic @@ -252635,6 +254480,7 @@ name: lateral ethmoid wing def: "Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin." [TAO:wd] comment: Synonym of lateral ethmoid wing: lateral ethmoid ventral wing (characiforms). synonym: "lateral ethmoid ventral wing" EXACT [TAO:0001616] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000226 ! lateral ethmoid bone @@ -252679,6 +254525,8 @@ id: UBERON:2001623 name: type 1 odontode def: "Odontode that is attached to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001622 ! odontode relationship: part_of UBERON:0008907 ! dermal bone @@ -252797,6 +254645,7 @@ id: UBERON:2001649 name: basihyal tooth def: "Tooth that is attached to the basihyal tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001648 ! basihyal tooth plate relationship: part_of UBERON:2001648 ! basihyal tooth plate @@ -252814,6 +254663,7 @@ id: UBERON:2001651 name: pharyngobranchial 2 tooth def: "Tooth that is attached to the pharyngobranchial 2 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate relationship: part_of UBERON:2001650 ! pharyngobranchial 2 tooth plate @@ -252831,6 +254681,7 @@ id: UBERON:2001653 name: pharyngobranchial 3 tooth def: "Tooth that is part of the pharyngobranchial 3 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate relationship: part_of UBERON:2001652 ! pharyngobranchial 3 tooth plate @@ -252848,6 +254699,7 @@ id: UBERON:2001655 name: upper pharyngeal 4 tooth def: "Tooth that is attached to the upper pharyngeal 4 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate relationship: part_of UBERON:2001654 ! upper pharyngeal 4 tooth plate @@ -252864,6 +254716,7 @@ id: UBERON:2001657 name: upper pharyngeal 5 tooth def: "Tooth that is attached to the upper pharyngeal 5 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate relationship: part_of UBERON:2001656 ! upper pharyngeal 5 tooth plate @@ -252883,6 +254736,7 @@ id: UBERON:2001659 name: upper pharyngeal tooth def: "Tooth that is attached to the upper pharyngeal tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001658 ! upper pharyngeal tooth plate relationship: part_of UBERON:2001658 ! upper pharyngeal tooth plate @@ -252892,6 +254746,7 @@ id: UBERON:2001660 name: basibranchial tooth def: "Tooth that is part of the basibranchial tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001661 ! basibranchial tooth plate relationship: part_of UBERON:2001661 ! basibranchial tooth plate @@ -252918,6 +254773,7 @@ id: UBERON:2001663 name: basibranchial 4 tooth def: "Tooth that is attached to the basibranchial 4 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001662 ! basibranchial 4 tooth plate relationship: part_of UBERON:2001662 ! basibranchial 4 tooth plate @@ -252935,6 +254791,7 @@ id: UBERON:2001665 name: basibranchial 2 tooth def: "Tooth that is attached to the basibranchial 2 tooth plate." [TAO:wd] is_a: UBERON:0001091 ! calcareous tooth +is_a: UBERON:0004756 ! dermal skeletal element intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:2001664 ! basibranchial 2 tooth plate relationship: part_of UBERON:2001664 ! basibranchial 2 tooth plate @@ -252986,6 +254843,7 @@ def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid co synonym: "cornu" EXACT [TAO:0001675] synonym: "cornua" EXACT PLURAL [TAO:0001675] synonym: "cornuae" EXACT PLURAL [TAO:0001675] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone @@ -253051,6 +254909,7 @@ relationship: connects UBERON:0011238 ! mesethmoid bone id: UBERON:2001681 name: cornu mesial process def: "Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu." [TAO:pem] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001675 ! mesethmoid cornu @@ -253100,6 +254959,7 @@ is_a: UBERON:0008846 ! skeletal ligament id: UBERON:2001688 name: palatine cartilage def: "Cartilage that is separate from and anterior to the pterygoquadrate cartilage." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage @@ -253107,6 +254967,7 @@ relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage id: UBERON:2001689 name: pterygoquadrate cartilage def: "Pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:0004752 ! palatoquadrate cartilage relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton @@ -253115,6 +254976,7 @@ relationship: part_of UBERON:0011152 ! dorsal hyoid arch skeleton id: UBERON:2001690 name: anterior cartilage of palatine def: "Anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage @@ -253122,6 +254984,7 @@ relationship: develops_from UBERON:2001688 ! palatine cartilage id: UBERON:2001691 name: posterior cartilage of palatine def: "Posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage @@ -253207,7 +255070,6 @@ name: basibranchial 5 bone def: "Basibranchial bone that is ventral, median, and associated with branchial arch 5 (pharyngeal arch 7). Develops in posterior copula cartilage or basibranchial 5 cartilage." [TAO:wd] is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004740 ! basibranchial bone -is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2001919 ! basibranchial 5 element intersection_of: UBERON:2001919 ! basibranchial 5 element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue @@ -253464,6 +255326,7 @@ id: UBERON:2001733 name: mesethmoid ventral diverging lamella def: "Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones." [TAO:wd] comment: Reference: Weitzman 1962. +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone @@ -253474,6 +255337,7 @@ def: "Process that is the posteriorly oriented, paired projection of the basipte synonym: "ischiac process" EXACT [TAO:0001734] synonym: "ischiatic process" EXACT [TAO:0001734] synonym: "posterior pelvic process" EXACT [http://hdl.handle.net/10088/11710] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -253490,6 +255354,7 @@ id: UBERON:2001737 name: coracoid foramen def: "Foramen that is located in the coracoid." [TAO:wd] xref: ZFA:0005426 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0004743 ! coracoid bone @@ -253556,6 +255421,7 @@ def: "Bony projection located on the anteroventral region of the mesethmoid whic comment: Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). synonym: "mesethmoid lateral wing" EXACT [TAO:0001747] synonym: "premaxillary articular process" EXACT [TAO:0001747] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011238 ! mesethmoid bone @@ -253600,6 +255466,7 @@ name: pre-narial cartilage def: "The pre-narial cartilage is a cartilage that is located anterior to the anterior naris." [TAO:wd] comment: Chen 1994. is_a: UBERON:0003932 ! cartilage element of chondrocranium +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011156 ! facial skeleton [Term] @@ -253832,6 +255699,7 @@ def: "Process that is part of the supraoccipital. It is a posteriorly directed a comment: The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. synonym: "supraoccipital process" EXACT [TAO:0001783] synonym: "supraoccipital spine" EXACT [TAO:0001783] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone @@ -253895,6 +255763,7 @@ is_a: UBERON:2002261 ! dorsal fin spine id: UBERON:2001792 name: pharyngobranchial 3 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 3." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001252 ! pharyngobranchial 3 bone @@ -253903,6 +255772,7 @@ id: UBERON:2001793 name: pharyngobranchial 4 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 4." [TAO:wd] synonym: "infrapharyngobranchial 4 bone uncinate process" EXACT [TAO:0001793] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001636 ! pharyngobranchial 4 bone @@ -254009,6 +255879,7 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw id: UBERON:2001806 name: intracranial diverticulum of swimbladder def: "An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit relationship: part_of UBERON:0006860 ! swim bladder @@ -254105,6 +255976,7 @@ name: middle nuchal plate def: "Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates." [TAO:wd] synonym: "median nuchal plate" EXACT [TAO:0001817] synonym: "second nuchal plate" EXACT [TAO:0001817] +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001815 ! nuchal plate @@ -254139,6 +256011,7 @@ id: UBERON:2001820 name: posterior nuchal plate def: "Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate." [TAO:wd] synonym: "third nuchal plate" EXACT [TAO:0001820] +is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0004247 ! bone of dorsum is_a: UBERON:0004376 ! fin bone is_a: UBERON:2001815 ! nuchal plate @@ -254150,6 +256023,8 @@ name: notochord posterior region def: "Portion of tissue that is part of the caudal fin." [TAO:wd] xref: ZFA:0001670 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002328 ! notochord relationship: part_of UBERON:4000167 ! caudal fin skeleton @@ -254184,6 +256059,8 @@ synonym: "branche ventrale de l'urohyal" EXACT [PSPUB:0000164] synonym: "processus hyo-pelvien" EXACT [PSPUB:0000139] synonym: "urohyal lateral lamella" EXACT [TAO:0001825] synonym: "urohyal ventral wing" EXACT [TAO:0001825] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000452 ! urohyal @@ -254191,6 +256068,8 @@ relationship: part_of UBERON:2000452 ! urohyal id: UBERON:2001826 name: urohyal median process def: "Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal." [TAO:wd] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000452 ! urohyal @@ -254406,6 +256285,7 @@ name: hyomandibular condyle for the opercle def: "Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle." [TAO:wd] synonym: "opercular process of hyomandibular" EXACT [TAO:0001855] is_a: UBERON:0009979 ! condyle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011607 ! hyomandibular cartilage relationship: part_of UBERON:0011608 ! hyomandibular element @@ -254421,7 +256301,9 @@ relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton id: UBERON:2001857 name: hyoidean artery def: "An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch." [TAO:wd] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004467 ! musculature of pharynx relationship: part_of UBERON:0011150 ! pharyngeal arch derived gill @@ -254542,6 +256424,7 @@ relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue id: UBERON:2001871 name: Weberian ossicle set def: "Anatomical cluster that consists of the Weberian ossicles." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:2001188 ! Weberian apparatus @@ -254686,6 +256569,7 @@ name: interhyal element def: "Skeletal element that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] synonym: "stylohyal" RELATED [] synonym: "stylohyal element" EXACT [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton @@ -254693,6 +256577,7 @@ relationship: part_of UBERON:0011153 ! ventral hyoid arch skeleton id: UBERON:2001893 name: hypobranchial element def: "Skeletal element that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial element." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -254728,6 +256613,7 @@ relationship: part_of UBERON:2001230 ! pharyngeal arch 6 skeleton id: UBERON:2001898 name: ceratobranchial element def: "Skeletal element that is bilaterally paired and forms part of the ventral branchial arches." [TAO:wd] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002103 ! ceratobranchial series @@ -254766,6 +256652,7 @@ id: UBERON:2001904 name: epibranchial element def: "Skeletal element that is bilaterally paired and articulates laterally with ceratobranchial element." [TAO:wd] synonym: "epibranchial elements" EXACT PLURAL [TAO:0001904] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:2002102 ! epibranchial series @@ -254798,6 +256685,7 @@ id: UBERON:2001909 name: pharyngobranchial element def: "Skeletal element of the branchial arches located medial to the epibranchials." [TAO:wd] synonym: "infrapharyngobranchial element" EXACT [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -254936,6 +256824,7 @@ is_a: UBERON:0004704 ! bone fossa id: UBERON:2001929 name: epioccipital posterior process def: "Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus." [TAO:wd] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:2001412 ! epiotic @@ -255406,6 +257295,7 @@ name: epibranchial arborescent organ def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. synonym: "suprabranchial organ" EXACT [TAO:0001990] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! chordate pharynx @@ -255491,6 +257381,8 @@ name: posterior cleithral process def: "Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired." [TAO:wd] synonym: "humeral process" EXACT [TAO:0001999] synonym: "postcleithral process" EXACT [TAO:0001999] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004741 ! cleithrum @@ -255503,6 +257395,9 @@ synonym: "posterior denticle of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior serration of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior thorn of pectoral fin spine" EXACT [TAO:0002000] synonym: "posterior tooth of pectoral fin spine" EXACT [TAO:0002000] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine @@ -255515,6 +257410,9 @@ synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002001] synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002001] synonym: "pectoral fin spine anterior dentation" RELATED [TAO:0002001] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine @@ -255527,6 +257425,9 @@ synonym: "anterior serration of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior thorn of pectoral fin spine" RELATED [TAO:0002002] synonym: "anterior tooth of pectoral fin spine" RELATED [TAO:0002002] synonym: "pectoral fin spine anterior distal serration" RELATED [TAO:0002002] +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001787 ! pectoral fin spine @@ -255539,6 +257440,8 @@ synonym: "posterior denticle of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior serration of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior thorn of dorsal fin spine 2" EXACT [TAO:0002003] synonym: "posterior tooth of dorsal fin spine 2" EXACT [TAO:0002003] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001790 ! dorsal fin spine 2 @@ -255584,6 +257487,7 @@ relationship: develops_from UBERON:4300263 ! supraneural 4 cartilage id: UBERON:2002008 name: neural lamina def: "Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001190 ! Weberian vertebra @@ -255591,6 +257495,7 @@ relationship: part_of UBERON:2001190 ! Weberian vertebra id: UBERON:2002009 name: medial cartilage of palatine def: "Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint." [TAO:wd] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage relationship: develops_from UBERON:2001688 ! palatine cartilage @@ -255614,6 +257519,7 @@ id: UBERON:2002012 name: dentary foramen def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:wd] xref: ZFA:0005427 +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0004742 ! dentary @@ -255623,6 +257529,7 @@ name: ascending limb of ceratobranchial 5 bone def: "Process that is the dorsally directed portion of ceratobranchial 5 bone." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:2002014 ! ascending limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone @@ -255631,6 +257538,7 @@ id: UBERON:2002014 name: ascending limb of ceratobranchial 5 cartilage def: "Process that is the dorsally directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage @@ -255655,6 +257563,7 @@ name: anterior limb of ceratobranchial 5 bone def: "Process that is the anterior and medially directed portion of ceratobranchial 5 bone part of ceratobranchial 5 bone." [TAO:wd] comment: This term applies to cypriniform fishes. is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: develops_from UBERON:2002018 ! anterior limb of ceratobranchial 5 cartilage relationship: part_of UBERON:2001239 ! ceratobranchial 5 bone @@ -255663,6 +257572,7 @@ id: UBERON:2002018 name: anterior limb of ceratobranchial 5 cartilage def: "Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: This term applies to cypriniform fishes. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001521 ! ceratobranchial 5 cartilage @@ -255693,7 +257603,9 @@ id: UBERON:2002021 name: ascending process of the parasphenoid def: "Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic." [TAO:wd] synonym: "ascending ramus of the parasphenoid" EXACT [TAO:0002021] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004745 ! parasphenoid [Term] @@ -255772,6 +257684,7 @@ relationship: develops_from UBERON:2202029 ! pectoral fin proximal radial cartil id: UBERON:2002030 name: ventral keel of coracoid def: "Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004743 ! coracoid bone @@ -255865,6 +257778,7 @@ name: posterior limb of parapophysis 4 def: "Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] synonym: "posterior branch of parapophysis 4" EXACT [TAO:0002043] synonym: "posterior wing of parapophysis 4" EXACT [TAO:0002043] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001971 ! parapophysis 4 @@ -255900,6 +257814,7 @@ def: "Fine ridge on surface of scale, often parallel to the circumference of sca synonym: "circuli" EXACT PLURAL [TAO:0002051] synonym: "crétule" EXACT [PSPUB:0000149] xref: ZFA:0005499 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006800 ! anatomical line relationship: part_of UBERON:0007380 ! dermal scale @@ -255962,6 +257877,7 @@ synonym: "branchial opening" EXACT [TAO:0002057] synonym: "gill aperture" EXACT [TAO:0002057] synonym: "opercular opening" EXACT [TAO:0002057] xref: ZFA:0005389 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001042 ! chordate pharynx @@ -256050,6 +257966,7 @@ relationship: part_of UBERON:4000167 ! caudal fin skeleton id: UBERON:2002069 name: distal cartilage of posterior process of basipterygium def: "Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001539 ! basipterygium cartilage relationship: part_of UBERON:2001734 ! posterior process of basipterygium @@ -256062,6 +257979,7 @@ synonym: "internal anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "internal arm of the basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior arm of basipterygium" EXACT [TAO:0002070] synonym: "mesial anterior process of basipterygium" EXACT [TAO:0002070] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -256069,6 +257987,7 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:2002071 name: distal cartilage of internal anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -256078,6 +257997,7 @@ id: UBERON:2002072 name: middle anterior process of basipterygium def: "Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially." [TAO:wd] synonym: "middle anterior arm of basipterygium" EXACT [TAO:0002072] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -256085,6 +258005,7 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:2002073 name: distal cartilage of middle anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -256097,6 +258018,7 @@ synonym: "external anterior arm of basipterygium" EXACT [TAO:0002074] synonym: "external arm of basipterygium" EXACT [TAO:0002074] synonym: "lateral anterior process of basipterygium" EXACT [TAO:0002074] synonym: "lateral pelvic process" EXACT [http://hdl.handle.net/10088/11710] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -256104,6 +258026,7 @@ relationship: part_of UBERON:2000623 ! basipterygium bone id: UBERON:2002075 name: distal cartilage of external anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium." [TAO:wd] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone relationship: part_of UBERON:2001539 ! basipterygium cartilage @@ -256113,6 +258036,7 @@ id: UBERON:2002076 name: lateral process of basipterygium def: "Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally." [TAO:wd] synonym: "posterolateral process of basipterygium" EXACT [TAO:0002076] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2000623 ! basipterygium bone @@ -256145,6 +258069,7 @@ is_a: UBERON:0002548 ! larva id: UBERON:2002080 name: spina occipitalis def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004747 ! supraoccipital bone @@ -256315,6 +258240,7 @@ name: epibranchial series def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] synonym: "epibranchials" EXACT PLURAL [TAO:0002102] is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001904 ! epibranchial element @@ -256326,6 +258252,7 @@ id: UBERON:2002103 name: ceratobranchial series def: "Anatomical cluster that consists of the ceratobranchial elements within an individual." [TAO:wd] is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001898 ! ceratobranchial element @@ -256348,6 +258275,7 @@ def: "Anatomical structure that is a subdivision of the cerebellum; it is the lo comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] synonym: "EG" EXACT [TAO:0002106] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002037 ! cerebellum [Term] @@ -256359,12 +258287,14 @@ synonym: "MCN" EXACT [TAO:0002107] synonym: "medullary pacemaker nucleus" EXACT [TAO:0002107] synonym: "pacemaker nucleus" EXACT [TAO:0002107] is_a: UBERON:0002616 ! regional part of brain +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:2002108 name: buccal papilla def: "Papilla that is part of the mouth." [TAO:wd] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:2001995 ! papilla relationship: part_of UBERON:0000165 ! mouth @@ -256409,6 +258339,7 @@ is_a: UBERON:2000602 ! uroneural [Term] id: UBERON:2002116 name: epibranchial organ +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0003103 ! compound organ is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001042 ! chordate pharynx @@ -256426,6 +258357,7 @@ id: UBERON:2002118 name: scale radius def: "Erosion channel that radiates out from the growth center (focus) of the scale across and through the circuli." [ISBN-10:0226870138] synonym: "radii" EXACT PLURAL [TAO:0002118] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0007380 ! dermal scale @@ -256433,13 +258365,16 @@ relationship: part_of UBERON:0007380 ! dermal scale id: UBERON:2002119 name: dermal scale focus comment: A demarcation on the scale signfiyning the initial growth point. Requires further classification see Lagler 1947. -is_a: UBERON:0000061 ! anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0007380 ! dermal scale [Term] id: UBERON:2002120 name: orbitosphenoid septum is_a: UBERON:0003037 ! septum +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002478 ! orbitosphenoid [Term] @@ -256504,6 +258439,7 @@ name: caudal rod def: "Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage." [TAO:wd] comment: Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC\nRELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES\n(OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal\nof Vertebrate Paleontology 27(1):17-25 synonym: "hypural-opisthural rod" EXACT [TAO:0002129] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -256513,6 +258449,7 @@ name: caudal appendage def: "Multi-tissue structure that is region of the body posterior to the last anal-fin ray." [TAO:wd] comment: Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones.\nDefinition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. synonym: "caudal filament" EXACT [TAO:0002130] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -256671,6 +258608,7 @@ id: UBERON:2002166 name: pseudourostyle def: "An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired." [TAO:GA_TG] comment: The pseudourostyle occurs only in certain teleost subgroups. It may be well developed in certain characiforms. +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2002084 ! pleurostyle @@ -256739,6 +258677,8 @@ name: climbing fiber def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] xref: ZFA:0001711 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli @@ -256757,6 +258697,7 @@ def: "Portion of tissue that grows in from the dorsolateral wall of the otic ves synonym: "dorsal bar" RELATED [TAO:0002193] xref: ZFA:0001672 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001841 ! anterior semicircular canal relationship: part_of UBERON:0001842 ! posterior semicircular canal @@ -256766,6 +258707,7 @@ name: epidermal placode def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] xref: ZFA:0001703 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002025 ! stratum basale of epidermis [Term] @@ -256840,6 +258782,8 @@ id: UBERON:2002210 name: mossy fiber xref: ZFA:0001710 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli relationship: part_of UBERON:2000603 ! valvula cerebelli @@ -256865,6 +258809,7 @@ relationship: part_of UBERON:2001171 ! os suspensorium id: UBERON:2002215 name: otic vesicle protrusion xref: ZFA:0001715 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003051 ! ear vesicle @@ -256890,6 +258835,8 @@ name: parallel fiber synonym: "parallel fibers" EXACT PLURAL [TAO:0002218] xref: ZFA:0001713 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000394 ! molecular layer corpus cerebelli relationship: part_of UBERON:2000913 ! molecular layer valvula cerebelli @@ -256918,12 +258865,14 @@ id: UBERON:2002223 name: pillar of the semicircular canal xref: ZFA:0001717 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:2002224 name: pleuroperitoneal cavity xref: ZFA:0001656 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002323 ! coelemic cavity lumen @@ -256932,6 +258881,7 @@ id: UBERON:2002225 name: posterior pronephric duct synonym: "posterior pronephric ducts" EXACT PLURAL [TAO:0002225] xref: ZFA:0001623 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0003060 ! pronephric duct @@ -256948,6 +258898,7 @@ id: UBERON:2002229 name: presumptive atrium primitive heart tube xref: ZFA:0001721 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] @@ -256955,6 +258906,7 @@ id: UBERON:2002232 name: presumptive cardiac ventricle primitive heart tube xref: ZFA:0001720 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005498 ! primitive heart tube [Term] @@ -256975,6 +258927,8 @@ id: UBERON:2002240 name: Purkinje cell layer corpus cerebelli xref: ZFA:0001706 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000188 ! corpus cerebelli [Term] @@ -256982,6 +258936,8 @@ id: UBERON:2002241 name: Purkinje cell layer valvula cerebelli xref: ZFA:0001709 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000603 ! valvula cerebelli [Term] @@ -256990,6 +258946,7 @@ name: scale primordium xref: ZFA:0001704 is_a: UBERON:0000479 ! tissue is_a: UBERON:0001048 ! primordium +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002067 ! dermis [Term] @@ -257011,6 +258968,8 @@ is_a: UBERON:1500003 ! lateral line canal lumen id: UBERON:2002249 name: ctenius synonym: "ctenii" EXACT PLURAL [TAO:0002249] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0013703 ! integumentary projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2002273 ! ctenoid scale @@ -257054,6 +259013,7 @@ is_a: UBERON:0000475 ! organism subdivision id: UBERON:2002257 name: premaxilla dentigerous process synonym: "premaxilla alveolar process" EXACT [TAO:0002257] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -257368,8 +259328,10 @@ name: afferent lamellar arteriole synonym: "afferent lamellar arterioles" EXACT PLURAL [TAO:0005015] synonym: "AFL" EXACT [TAO:0005015] xref: ZFA:0005015 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005012 ! afferent filamental artery @@ -257400,9 +259362,11 @@ name: efferent lamellar arteriole synonym: "efferent lamellar arterioles" EXACT PLURAL [TAO:0005019] synonym: "ELA" EXACT [TAO:0005019] xref: ZFA:0005019 +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003469 ! respiratory system artery is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0003920 ! venous blood vessel +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:2000211 ! gill lamella relationship: part_of UBERON:2005018 ! efferent filamental artery @@ -257542,6 +259506,7 @@ relationship: part_of UBERON:0002201 ! vasculature of trunk id: UBERON:2005039 name: anterior lateral mesoderm xref: ZFA:0005039 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003081 ! lateral plate mesoderm @@ -257649,6 +259614,7 @@ name: bulbus arteriosus outer layer def: "Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus externa" EXACT [TAO:0005066] xref: ZFA:0005066 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0004706 ! bulbus cordis @@ -257659,6 +259625,7 @@ def: "Composed of 7-10 layers of helically arranged smooth muscle cells surround synonym: "bulbus arteriosus media" EXACT [TAO:0005067] xref: ZFA:0005067 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004706 ! bulbus cordis [Term] @@ -257668,6 +259635,7 @@ def: "Composed of subendothelium with longitudinally oriented collagen, reticula synonym: "bulbus arteriosus intima" EXACT [TAO:0005068] xref: ZFA:0005068 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0004706 ! bulbus cordis [Term] @@ -257675,6 +259643,7 @@ id: UBERON:2005072 name: endocardial ring xref: ZFA:0005072 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002165 ! endocardium [Term] @@ -257933,6 +259902,7 @@ relationship: part_of UBERON:2005114 ! middle lateral line system id: UBERON:2005122 name: dorsal axial hypoblast xref: ZFA:0005122 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2001378 ! axial hypoblast @@ -257974,6 +259944,7 @@ name: distal epidermal cap of regenerating fin/limb def: "Part of regeneration epithelium at the tip of the fin/limb [ZFA,modified]." [ZFIN:curator] xref: TAO:0005149 xref: ZFA:0005149 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb @@ -257984,6 +259955,7 @@ def: "Layer of the wound epidermis that surrounds the blastema in the fin or lim synonym: "basal wound epidermis" EXACT [TAO:0005150] xref: TAO:0005150 xref: ZFA:0005150 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0007567 ! regenerating anatomical structure relationship: part_of UBERON:2001389 ! regeneration epithelium of fin/limb @@ -258017,6 +259989,7 @@ synonym: "3rd lobe" EXACT [TAO:0005174] synonym: "third lobe" EXACT [TAO:0005174] xref: ZFA:0005174 is_a: UBERON:0000481 ! multi-tissue structure +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0002107 ! liver [Term] @@ -258569,6 +260542,7 @@ id: UBERON:2005256 name: intervillus pockets def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] xref: ZFA:0005256 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0001277 ! intestinal epithelium @@ -258705,6 +260679,7 @@ name: hyomandibular foramen def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII)." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005629 is_a: UBERON:0005744 ! bone foramen +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-9114-8737 relationship: part_of UBERON:0011608 ! hyomandibular element creation_date: 2012-04-09T07:39:00Z @@ -258859,6 +260834,7 @@ name: posterior recess def: "Posterior protrusion of the third ventricle." [ZFIN:curator] synonym: "posterior recess of diencephalic ventricle" EXACT [TAO:0005338] xref: ZFA:0005338 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002286 ! third ventricle @@ -258902,6 +260878,7 @@ name: extrapancreatic duct def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] xref: ZFA:0005346 is_a: UBERON:0003928 ! digestive system duct +is_a: UBERON:0004119 ! endoderm-derived structure relationship: part_of UBERON:0007329 ! pancreatic duct [Term] @@ -259119,6 +261096,7 @@ id: UBERON:2005409 name: pars superior ear def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] xref: ZFA:0005409 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear @@ -259127,6 +261105,7 @@ id: UBERON:2005410 name: pars inferior ear def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] xref: ZFA:0005410 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001846 ! internal ear @@ -259135,6 +261114,7 @@ id: UBERON:2005411 name: common crus xref: ZFA:0005411 is_a: UBERON:0000058 ! duct +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:2005409 ! pars superior ear [Term] @@ -259150,6 +261130,7 @@ id: UBERON:2005415 name: inner ear foramen def: "Foramen in the inner ear." [ZFIN:curator] xref: ZFA:0005415 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0001846 ! internal ear @@ -259167,6 +261148,8 @@ synonym: "dorsorostral cluster" EXACT [TAO:0007001] synonym: "drc" EXACT [TAO:0007001] xref: ZFA:0007001 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001893 ! telencephalon [Term] @@ -259195,6 +261178,7 @@ def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer synonym: "ec" EXACT [TAO:0007004] xref: ZFA:0007004 is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001905 ! pineal body [Term] @@ -259251,6 +261235,7 @@ is_a: UBERON:0005497 ! non-neural ectoderm id: UBERON:2007014 name: anterior presumptive neural plate xref: ZFA:0007014 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0007284 ! presumptive neural plate @@ -259258,6 +261243,7 @@ relationship: part_of UBERON:0007284 ! presumptive neural plate id: UBERON:2007015 name: posterior presumptive neural plate xref: ZFA:0007015 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0007284 ! presumptive neural plate @@ -259265,7 +261251,7 @@ relationship: part_of UBERON:0007284 ! presumptive neural plate id: UBERON:2007023 name: posterior neural keel xref: ZFA:0007023 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:0003057 ! chordal neural plate relationship: part_of UBERON:0007135 ! neural keel @@ -259301,7 +261287,7 @@ relationship: part_of UBERON:2007024 ! anterior neural keel id: UBERON:2007027 name: forebrain midbrain boundary neural keel xref: ZFA:0007027 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:0009612 ! forebrain midbrain boundary neural plate relationship: part_of UBERON:2007024 ! anterior neural keel @@ -259310,6 +261296,7 @@ relationship: part_of UBERON:2007024 ! anterior neural keel id: UBERON:2007028 name: spinal cord neural keel xref: ZFA:0007028 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2007023 ! posterior neural keel @@ -259327,7 +261314,7 @@ relationship: part_of UBERON:2007023 ! posterior neural keel id: UBERON:2007030 name: posterior neural rod xref: ZFA:0007030 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: develops_from UBERON:2007023 ! posterior neural keel relationship: part_of UBERON:0005068 ! neural rod @@ -259354,7 +261341,7 @@ relationship: part_of UBERON:2007031 ! anterior neural rod id: UBERON:2007033 name: forebrain midbrain boundary neural rod xref: ZFA:0007033 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007027 ! forebrain midbrain boundary neural keel relationship: part_of UBERON:2007031 ! anterior neural rod @@ -259372,6 +261359,7 @@ relationship: part_of UBERON:2007031 ! anterior neural rod id: UBERON:2007035 name: spinal cord neural rod xref: ZFA:0007035 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:2007030 ! posterior neural rod @@ -259389,7 +261377,7 @@ relationship: part_of UBERON:2007030 ! posterior neural rod id: UBERON:2007040 name: forebrain midbrain boundary neural tube xref: ZFA:0007040 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007651 ! anatomical junction relationship: develops_from UBERON:2007033 ! forebrain midbrain boundary neural rod relationship: part_of UBERON:0003080 ! anterior neural tube @@ -259407,6 +261395,7 @@ relationship: part_of UBERON:0003080 ! anterior neural tube id: UBERON:2007042 name: spinal cord neural tube xref: ZFA:0007042 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005291 ! embryonic tissue relationship: part_of UBERON:0003076 ! posterior neural tube @@ -259491,7 +261480,6 @@ synonym: "anterior pillar" EXACT [TAO:0007054] synonym: "anterior pillar of the semicircular canal" EXACT [TAO:0007054] synonym: "horizontal hub" RELATED [TAO:0007054] xref: ZFA:0007054 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: develops_from UBERON:2000232 ! lateral semicircular canal primordium relationship: develops_from UBERON:2000469 ! anterior semicircular canal primordium @@ -259505,7 +261493,6 @@ synonym: "ventral bar" EXACT [TAO:0007055] synonym: "ventral pillar" EXACT [TAO:0007055] synonym: "ventral piller of the semicircular canal" EXACT [TAO:0007055] xref: ZFA:0007055 -is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:2002223 ! pillar of the semicircular canal relationship: develops_from UBERON:2001716 ! caudal principal ray 4 @@ -259589,6 +261576,7 @@ synonym: "os pelvien" RELATED [PSPUB:0000164] synonym: "pelvic bone" RELATED [TAO:0000623] synonym: "pelvic plate" RELATED [] synonym: "pubic plate" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -259649,7 +261637,6 @@ name: pectoral fin radial element def: "Pectoral fin radial elements are the internal skeletal supports of the pectoral fin which develop from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:GA_TG] comment: There are two paired series of pectoral radial elements, the proximal and the distal ones that may have variable shapes and sizes. synonym: "pectoral actinost" RELATED [TAO:0001586] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1600006 ! paired fin radial element intersection_of: UBERON:2100271 ! radial element intersection_of: part_of UBERON:0000151 ! pectoral fin @@ -260351,6 +262338,7 @@ synonym: "processus alaris" RELATED [UBERON:3000002] synonym: "second upper labial" RELATED [UBERON:3000002] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260367,6 +262355,7 @@ synonym: "processus ascendens of premaxilla" RELATED [UBERON:3000003] synonym: "processus frontalis of premaxilla" RELATED [UBERON:3000003] synonym: "processus nasalis of premaxilla" RELATED [UBERON:3000003] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002244 ! premaxilla [Term] @@ -260381,6 +262370,7 @@ id: UBERON:3000012 name: angulosplenial coronoid process def: "Point of insertion of the adductor mandibulae musculature." [AAO:LAP] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000966 ! angulosplenial [Term] @@ -260388,6 +262378,7 @@ id: UBERON:3000015 name: anterior maxillary process def: "Process that extends anteriorly from the planum triangulare and invests the medial face of the pars facialis of the maxilla." [AAO:LAP] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260396,6 +262387,7 @@ name: anterior nasal wall def: "Paired, vertical, and relatively straight plates that form the anterior limit of the nasal capsule." [AAO:LAP] synonym: "prenasal wall" RELATED [UBERON:3000016] synonym: "solum anterius" RELATED [UBERON:3000016] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton @@ -260403,6 +262395,7 @@ relationship: part_of UBERON:0006813 ! nasal skeleton id: UBERON:3000017 name: anterior process of pars palatina of maxilla is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004527 ! alveolar process of maxilla [Term] @@ -260411,18 +262404,22 @@ name: anterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends anteriorly towards the maxilla." [AAO:LAP] synonym: "ramus maxillaris of pterygoid" RELATED [UBERON:3000018] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:3000020 name: anterolateral process of frontoparietal +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011639 ! frontoparietal bone [Term] id: UBERON:3000022 name: antorbital process is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000400 ! pars facialis of maxilla [Term] @@ -260436,6 +262433,7 @@ synonym: "pediculus" RELATED [UBERON:3000031] synonym: "processus ascendens of palatoquadrate" RELATED [UBERON:3000031] synonym: "schlafenflugelknorpel" RELATED [UBERON:3000031] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004752 ! palatoquadrate cartilage [Term] @@ -260449,6 +262447,7 @@ name: basal process of palatoquadrate def: "Process that extends medially from the ventromedial corner of the palatoquadrate cartilage and articulates or fuses to the anterior wall of the otic capsule via the basitrabecular process." [AAO:LAP] synonym: "processus basalis" RELATED [UBERON:3000036] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: has_part UBERON:3000292 ! medial ramus of pterygoid relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -260462,6 +262461,7 @@ is_a: UBERON:3000051 ! braincase and otic capsule opening id: UBERON:3000038 name: basimandibulare is_a: UBERON:0000479 ! tissue +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] @@ -260509,6 +262509,7 @@ id: UBERON:3000059 name: capsular process def: "Narrow process of the skeletal support that projects forward." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000565 ! skeletal support for eminentia olfactoria [Term] @@ -260528,6 +262529,7 @@ name: cartilago ectochoanalis def: "Lateral cartilaginous border of the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260535,6 +262537,7 @@ id: UBERON:3000069 name: cartilago infranarina is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260556,6 +262559,7 @@ id: UBERON:3000079 name: cartilago retronarina is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260599,18 +262603,21 @@ def: "Anterior-lateral projections from the corpus of the hyoid apparatus." [PHE comment: Found in Anura (frogs) only. synonym: "anterior cornua" EXACT [] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] id: UBERON:3000110 name: crista contacta def: "Thin, horizontal ridge that extends medially from the corpus of the septomaxilla; it lays on the lamina inferior." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus [Term] id: UBERON:3000111 name: crista dentalis of maxilla +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004527 ! alveolar process of maxilla @@ -260618,6 +262625,7 @@ relationship: part_of UBERON:0004527 ! alveolar process of maxilla id: UBERON:3000112 name: crista dentalis of premaxilla synonym: "dental ridge of premaxilla" RELATED [UBERON:3000112] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0034898 ! alveolar ridge of premaxilla @@ -260626,11 +262634,13 @@ id: UBERON:3000113 name: crista intermedia def: "Paired, oblique plates of cartilage located ventral to the alary cartilages. The dorsomedial margin of each crista intermedia is fused to the transitional zone between the septum nasi and the tectum nasi, whereas the ventrolateral margin bears two laminae, the lamina superior and the lamina inferior." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000115 name: crista lateralis of premaxilla +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002244 ! premaxilla @@ -260640,6 +262650,7 @@ name: crista subnasalis def: "Ventral crest of the paries nasi." [AAO:LAP] synonym: "subnasal crest" RELATED [UBERON:3000117] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260647,6 +262658,7 @@ id: UBERON:3000118 name: crista supraorbitalis def: "Short and blunt process that extends posteriorly from the posteromedial margin of the postnasal wall, on the anterodorsal corner of the orbit above the medial orbitonasal foramen." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260662,6 +262674,7 @@ name: dilatatio alaris def: "Flange that extends ventrally from about the middle portion of the margo mandibularis." [AAO:LAP] synonym: "ventral flange of anterior ramus of pterygoid" RELATED [UBERON:3000131] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000280 ! margo mandibularis of pterygoid [Term] @@ -260674,6 +262687,7 @@ is_obsolete: true id: UBERON:3000141 name: endolymphatic system is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -260682,6 +262696,7 @@ name: extremitas anterior def: "Large anterior outgrowth of the septomaxilla that is directed into the space between the alary cartilage and the lamina inferior." [AAO:LAP] synonym: "anterior ramus" RELATED [UBERON:3000155] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011167 ! septomaxilla bone [Term] @@ -260744,6 +262759,7 @@ is_a: UBERON:3000316 ! nasal opening [Term] id: UBERON:3000177 name: flange of quadratojugal +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011267 ! quadratojugal bone @@ -260757,6 +262773,8 @@ synonym: "otostapes" RELATED [UBERON:3000178] synonym: "pars otica columellae" RELATED [UBERON:3000178] synonym: "pseudooperculum" RELATED [UBERON:3000178] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000408 ! pars media plectri [Term] @@ -260847,6 +262865,7 @@ is_a: UBERON:0002376 ! cranial muscle id: UBERON:3000226 name: hyolaryngeal complex def: "Complex formed by two units, the hyoid and laryngeal apparatuses, which are both derived from the larval hyobranchial skeleton." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0008895 ! splanchnocranium @@ -260859,6 +262878,7 @@ synonym: "processus prenasalis inferior" RELATED [UBERON:3000234] synonym: "processus prenasalis inferior lateralis" RELATED [UBERON:3000234] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260868,6 +262888,7 @@ def: "Larval lower jaw lies anterior to Meckels cartilage." [AAO:EJS] synonym: "infralabial cartilage" RELATED [UBERON:3000237] synonym: "mentomeckelian cartilage" RELATED [UBERON:3000237] is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton @@ -260877,12 +262898,14 @@ name: lamella alaris def: "Dorsal plate of the squamosal." [AAO:LAP] synonym: "horizontal arm of squamosal" RELATED [UBERON:3000254] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001695 ! squamous part of temporal bone [Term] id: UBERON:3000255 name: lamina anterior of pars facialis is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000400 ! pars facialis of maxilla [Term] @@ -260890,6 +262913,7 @@ id: UBERON:3000259 name: lamina inferior def: "Lateral expansion of the crista intermedia that serves as the floor of the cavum medium." [AAO:LAP] synonym: "lamina inferior cristae intermediae" RELATED [UBERON:3000259] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule @@ -260897,6 +262921,7 @@ relationship: part_of UBERON:0006332 ! nasal capsule id: UBERON:3000260 name: lamina nariochoanalis def: "Free, dorsal margin of the lamina inferior." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006332 ! nasal capsule @@ -260905,6 +262930,7 @@ id: UBERON:3000263 name: lamina precerebralis def: "Posterior face of septum nasi." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260913,6 +262939,7 @@ name: lamina superior def: "Lateral expansion of the crista intermedia that serves as the roof of the cavum medium." [AAO:LAP] synonym: "lamina superior cristae intermediae" RELATED [UBERON:3000264] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260927,6 +262954,7 @@ id: UBERON:3000280 name: margo mandibularis of pterygoid def: "Ventrally directed margin that connects the anterior and posterior rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] @@ -260934,6 +262962,7 @@ id: UBERON:3000281 name: margo orbitalis of maxilla def: "Dorsal margin of the maxilla between the frontal and zygomatico-maxillary processes." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -260941,6 +262970,7 @@ id: UBERON:3000282 name: margo orbitalis of pterygoid def: "Margin that connects the anterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] @@ -260948,6 +262978,7 @@ id: UBERON:3000283 name: margo orbitalis of squamosal def: "Anterior margin of the squamosal that takes part in the formation of the orbit." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000254 ! lamella alaris [Term] @@ -260955,6 +262986,7 @@ id: UBERON:3000284 name: margo tympanicus of pterygoid def: "Margin that connects the posterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] @@ -260973,6 +263005,7 @@ id: UBERON:3000290 name: medial inferior prenasal cartilage is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -260986,6 +263019,7 @@ id: UBERON:3000292 name: medial ramus of pterygoid def: "In a triradiate pterygoid, the process that extends medially towards the otic capsule." [AAO:LAP] synonym: "ramus interior of pterygoid" RELATED [UBERON:3000292] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010389 ! pterygoid bone @@ -260995,11 +263029,13 @@ name: median prenasal process def: "Anterior projection of the septum nasi that protrudes through the anterior nasal wall." [AAO:LAP] synonym: "processus prenasalis medius" RELATED [UBERON:3000294] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:3000295 name: median symphysis +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region @@ -261032,6 +263068,7 @@ synonym: "dorsal process" RELATED [UBERON:3000329] synonym: "lamina obliqua" RELATED [UBERON:3000329] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261079,6 +263116,7 @@ is_obsolete: true id: UBERON:3000363 name: otic ligament is_a: UBERON:0008846 ! skeletal ligament +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -261087,11 +263125,13 @@ id: UBERON:3000364 name: otic plate of pterygoid def: "Osseous expansion of the posterior and medial rami of the pterygoid." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:3000365 name: otic process +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -261101,6 +263141,7 @@ name: otic ramus of squamosal def: "Ramus (process) that extends medially toward the otic capsule." [AAO:LAP] synonym: "posterior ramus" RELATED [UBERON:3000367] synonym: "ramus paroticus" RELATED [UBERON:3000367] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -261128,6 +263169,7 @@ is_obsolete: true [Term] id: UBERON:3000375 name: palatine process of the pars facialis of the maxilla +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -261141,6 +263183,7 @@ replaced_by: UBERON:0012073 [Term] id: UBERON:3000380 name: palatoquadrate articular process +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -261153,12 +263196,15 @@ synonym: "connection between lamina nariochoanalis and postnasal wall" RELATED [ synonym: "processus lingularis" RELATED [UBERON:3000381] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000384 name: parasagittal crest is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011639 ! frontoparietal bone [Term] @@ -261167,6 +263213,8 @@ name: cultriform process def: "Process that extends anteriorly from the orbitotemporal region." [AAO:LAP] synonym: "pars medialis" RELATED [UBERON:3000386] synonym: "rostrum" RELATED [UBERON:3000386] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid @@ -261175,6 +263223,8 @@ id: UBERON:3000387 name: subotic alae def: "Paired processes extending lateraly from the posterior body of the parasphenoid that, when present, support the otic capsules ventrally." [AAO:LAP] synonym: "processus lateralis" RELATED [UBERON:3000387] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid @@ -261191,12 +263241,14 @@ name: paries nasi def: "Paired, elongate, ventrolaterally-orieted cartilaginous structures that extend to the premaxilla-maxilla articulation." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000393 name: pars amphibiorum is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] @@ -261204,12 +263256,14 @@ id: UBERON:3000394 name: pars articularis of mandibular arch def: "Posterior end of Meckel's cartilage that forms the articular head of the mandibular arch." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003107 ! Meckel's cartilage [Term] id: UBERON:3000395 name: pars basilaris is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] @@ -261238,24 +263292,29 @@ synonym: "hyostapes" RELATED [UBERON:3000399] synonym: "medio-stapedial" RELATED [UBERON:3000399] synonym: "pars quadrata columellae" RELATED [UBERON:3000399] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000443 ! plectral apparatus [Term] id: UBERON:3000400 name: pars facialis of maxilla is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:3000401 name: pars facialis of maxillopalatine is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000288 ! maxillopalatine [Term] id: UBERON:3000405 name: pars inferior of labyrinth is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -261265,12 +263324,16 @@ def: "Plate-like structure that lies in the fenestra ovalis. It arises within th synonym: "operculum auris" RELATED [UBERON:3000406] synonym: "operculum fenestrae ovalis" RELATED [UBERON:3000406] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000443 ! plectral apparatus [Term] id: UBERON:3000408 name: pars media plectri is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000443 ! plectral apparatus [Term] @@ -261293,6 +263356,7 @@ id: UBERON:3000428 name: perilymphatic system def: "Consists of enlarged cistern against which the operculum and footplate of the columella rest in the oval window. Together with the endolymphatic systems comprises the membranous labryinth of the inner ear. Duellman and Trueb 1994." [PHENOSCAPE] is_a: UBERON:0001032 ! sensory system +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -261314,7 +263378,9 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton [Term] id: UBERON:3000433 name: pineal foramen +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005744 ! bone foramen +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0011639 ! frontoparietal bone [Term] @@ -261322,6 +263388,7 @@ id: UBERON:3000434 name: planum antorbitale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261329,6 +263396,7 @@ id: UBERON:3000437 name: planum conchale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261336,6 +263404,7 @@ id: UBERON:3000438 name: planum internasale is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261345,6 +263414,7 @@ def: "Vertical plate of cartilage that is fused posterodorsally to the oblique c synonym: "pars terminalis" RELATED [UBERON:3000440] synonym: "terminal plate" RELATED [UBERON:3000440] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261352,6 +263422,7 @@ id: UBERON:3000441 name: planum triangulare def: "Cartilaginous, distal expansion of the lamina orbitonasalis that invests the pars facialis of the maxilla medially." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261365,6 +263436,7 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton id: UBERON:3000446 name: posterior condyle is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000515 ! pseudoangular [Term] @@ -261372,18 +263444,21 @@ id: UBERON:3000448 name: posterior maxillary process def: "Process that extends posteriorly from the planum triangulare and invests the maxilla laterally and the anterior ramus of the pterygoid medially." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000449 name: posterior maxillary process dorsal process is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000448 ! posterior maxillary process [Term] id: UBERON:3000450 name: posterior mental process is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] @@ -261391,11 +263466,13 @@ id: UBERON:3000451 name: posterior ramus of pterygoid def: "In a triradiate pterygoid, the process that extends posterolaterally towards the jaw articulation." [AAO:LAP] is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0010389 ! pterygoid bone [Term] id: UBERON:3000453 name: posterolateral vomerine process +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -261404,6 +263481,7 @@ id: UBERON:3000454 name: postnasal wall def: "Paired, anteriorly concave structures that form the posterior limit of nasal capsule. It consists of two parts: a ventral piece, the lamina orbitonasalis, and a dorsal plate that is part of the tectum nasi." [AAO:LAP] synonym: "posterior wall of nasal capsule" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton @@ -261411,6 +263489,7 @@ relationship: part_of UBERON:0006813 ! nasal skeleton id: UBERON:3000459 name: prearticular coronoid process def: "Point of insertion of the masticatory musculature." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011637 ! prearticular bone @@ -261424,6 +263503,7 @@ replaced_by: UBERON:2001626 [Term] id: UBERON:3000467 name: preorbital process of the pars facialis of the maxilla +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000400 ! pars facialis of maxilla @@ -261446,6 +263526,8 @@ synonym: "processus ascendens columellae" RELATED [UBERON:3000486] synonym: "processus dorsalis columellae" RELATED [UBERON:3000486] synonym: "processus superior columellae" RELATED [UBERON:3000486] synonym: "suprastapediale" RELATED [UBERON:3000486] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000399 ! pars externa plectri @@ -261454,6 +263536,7 @@ id: UBERON:3000492 name: processus infrafenestralis def: "Posterior part of the corpus of the septomaxilla; the posterior surface of the processus infrafenestralis is in contact with the oblique cartilage." [AAO:LAP] synonym: "dorsal crest" RELATED [UBERON:3000492] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus @@ -261461,6 +263544,7 @@ relationship: part_of UBERON:3000645 ! corpus id: UBERON:3000493 name: processus internus of pseudoangular synonym: "processus internus" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000515 ! pseudoangular @@ -261468,6 +263552,7 @@ relationship: part_of UBERON:3000515 ! pseudoangular id: UBERON:3000494 name: processus lingualis of pterygoid def: "Dorsolateral process of the of the medial ramus of the pterygoid." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000292 ! medial ramus of pterygoid @@ -261475,6 +263560,7 @@ relationship: part_of UBERON:3000292 ! medial ramus of pterygoid id: UBERON:3000500 name: processus posterior of maxilla def: "Posterior, toothless portion of the maxilla by which it usually comes in contact with the quadratojugal." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -261488,6 +263574,7 @@ is_a: UBERON:0004530 ! bony projection [Term] id: UBERON:3000509 name: processus suprafenestralis +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000645 ! corpus @@ -261495,6 +263582,7 @@ relationship: part_of UBERON:3000645 ! corpus id: UBERON:3000512 name: processus zygomatico-maxillaris def: "Posterodorsal extension of the maxilla by which it establishes contact with the squamosal." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -261510,6 +263598,7 @@ relationship: part_of UBERON:0003278 ! skeleton of lower jaw [Term] id: UBERON:3000516 name: pseudobasal process +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -261546,6 +263635,7 @@ replaced_by: UBERON:0010389 id: UBERON:3000523 name: pterygoid process of palatoquadrate def: "Process that extends anteriorly from the anterolateral margin of the palatoquadrate and articulates or synchondrotically fuses to the posterior end of the posterior maxillary process." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -261553,11 +263643,13 @@ relationship: part_of UBERON:0004752 ! palatoquadrate cartilage id: UBERON:3000524 name: pterygoquadrate is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003108 ! suspensorium [Term] id: UBERON:3000527 name: quadrate process of palatoquadrate +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -261565,12 +263657,14 @@ relationship: part_of UBERON:0004752 ! palatoquadrate cartilage id: UBERON:3000538 name: recessus fenestrae ovalis is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:3000428 ! perilymphatic system [Term] id: UBERON:3000539 name: recessus marsupiatus of premaxilla def: "Is a recess on the surface of the premaxilla near to the base of the pars facialis." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla @@ -261578,6 +263672,7 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:3000540 name: recessus vaginiformis def: "Is a space on the interior surface of the pars facialis of the maxilla." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla @@ -261586,12 +263681,14 @@ id: UBERON:3000543 name: retroarticular process def: "Bony process that is part of the articular and is the point of insertion of the m. interhuoideus posterior." [AAO:LAP] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000515 ! pseudoangular [Term] id: UBERON:3000547 name: rostral process def: "Is a process of the nasal bone directed anteriorly towards the rostrum." [PHENOSCAPE] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001681 ! nasal bone relationship: part_of UBERON:0001703 ! neurocranium @@ -261602,6 +263699,7 @@ id: UBERON:3000560 name: septum semicircularium anterior def: "The anterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -261609,6 +263707,7 @@ id: UBERON:3000561 name: septum semicircularium laterale def: "The lateral connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -261616,11 +263715,13 @@ id: UBERON:3000562 name: septum semircularium posterior def: "The posterior connective tissue partition between walls of otic capsule around which the membranous semicircular canals pass." [PHENOSCAPE] is_a: UBERON:0003037 ! septum +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:3000563 name: seydels palatal process +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000068 ! cartilago ectochoanalis @@ -261629,6 +263730,7 @@ id: UBERON:3000565 name: skeletal support for eminentia olfactoria def: "Elevation of the dorsal surface of the solum nasi medial to the fenestra endochoanalis that provides support for the eminentia olfactoria." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261639,12 +263741,14 @@ synonym: "nasal floor" RELATED [UBERON:3000569] synonym: "planum basale" RELATED [UBERON:3000569] synonym: "solum nasale" RELATED [UBERON:3000569] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] id: UBERON:3000570 name: spatium sacculare is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:3000428 ! perilymphatic system [Term] @@ -261677,12 +263781,15 @@ synonym: "stapes" RELATED [UBERON:3000580] synonym: "stelidium" RELATED [UBERON:3000580] synonym: "stilus columellare" RELATED [UBERON:3000580] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000408 ! pars media plectri [Term] id: UBERON:3000581 name: sulcus dentalis of maxilla def: "Groove located between the pars dentalis and the bases of the maxillary teeth." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002397 ! maxilla @@ -261690,6 +263797,7 @@ relationship: part_of UBERON:0002397 ! maxilla id: UBERON:3000582 name: sulcus dentalis of premaxilla def: "Groove located between the pars dentalis and the bases of the premaxillary teeth." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002244 ! premaxilla @@ -261697,6 +263805,7 @@ relationship: part_of UBERON:0002244 ! premaxilla id: UBERON:3000583 name: sulcus for Meckels cartilage def: "A groove on the palatoquadrate that is occupied by the Meckel's cartilage." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:3000012 ! angulosplenial coronoid process @@ -261706,6 +263815,7 @@ name: superior prenasal cartilage def: "Paired, elongate cartilages that extend anteroventrally to abut the dorsomedial margin of the posterior face of the alary process of the premaxilla. The function of these cartilages is to transmit the movement of the premaxilla to the alary cartilages during the closure of the apertura nasalis externa." [AAO:LAP] is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261726,6 +263836,8 @@ replaced_by: UBERON:0004747 [Term] id: UBERON:3000590 name: supraorbital flange +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0011639 ! frontoparietal bone @@ -261739,6 +263851,7 @@ relationship: part_of UBERON:3000052 ! braincase and otic capsule skeleton [Term] id: UBERON:3000597 name: symphysis maxillaris +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001709 ! upper jaw region @@ -261755,6 +263868,7 @@ id: UBERON:3000601 name: tectum nasi def: "Roof of the nasal capsule, confluent with lamina orbitonasalis posteriorly and united to septum nasi." [AAO:LAP] synonym: "tectum nasale" RELATED [UBERON:3000601] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0010363 ! endochondral element relationship: part_of UBERON:0006813 ! nasal skeleton @@ -261774,6 +263888,7 @@ id: UBERON:3000619 name: tympanosquamosal def: "Central, funnel-shaped, ossified portion of the tympanic annulus fused to the squamosal bone." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0003108 ! suspensorium [Term] @@ -261782,18 +263897,21 @@ name: ventral ramus of squamosal def: "Longest of the three squamosal rami; it invests the dorsolateral margin of the palatoquadrate. The distal end of the ventral ramus invests the quadrate and articulates with the quadratojugal." [AAO:LAP] synonym: "processus posterolateralis" RELATED [UBERON:3000628] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001695 ! squamous part of temporal bone [Term] id: UBERON:3000634 name: vomerine canal is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer [Term] id: UBERON:3000639 name: zygomatic ramus of squamosal def: "Ramus (process) that projects anteriorly from the dorsal body of the squamosal and forms part of the posterior margin of the orbit." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -261820,6 +263938,7 @@ def: "Rod-shaped process that extends caudally from the inferior edge of the pla synonym: "lingular process" RELATED [UBERON:3000644] synonym: "processus lingularis" BROAD [] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -261840,12 +263959,14 @@ id: UBERON:3000646 name: margo libera def: "Anterior, rounded portion of the corpus of the septomaxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000645 ! corpus [Term] id: UBERON:3000647 name: crista interna def: "Sharp ridge that extends medially from the basal part of the processus infrafenestralis; it separates the diverticulum proncipale from the diverticulum medium." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000492 ! processus infrafenestralis @@ -261853,6 +263974,8 @@ relationship: part_of UBERON:3000492 ! processus infrafenestralis id: UBERON:3000648 name: crista praeopercularis def: "Synchondrotic or synostotic connection between the footplate of the pars media plectri and the ventral margin of the fenestra ovalis." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000408 ! pars media plectri @@ -261861,6 +263984,7 @@ id: UBERON:3000649 name: anterior process of vomer def: "Process that extends anterolaterally toward the maxilla-premaxilla articulation." [AAO:LAP] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer [Term] @@ -261869,6 +263993,7 @@ name: processus frontalis of maxilla def: "Anterio portion of the maxilla that may contact the nasal and take part in the formation of a groove for the nasolacrimal duct." [AAO:LAP] synonym: "processus frontalis" BROAD [] synonym: "processus praeorbitalis of the pars facialis" RELATED [UBERON:3000650] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002397 ! maxilla @@ -261877,6 +264002,7 @@ id: UBERON:3000651 name: lamina anterior of maxilla def: "Most anterior part of the maxilla, which is in contact with the premaxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002397 ! maxilla [Term] @@ -261885,6 +264011,7 @@ name: fossa maxillaris def: "Depression lacated on the inner surface of the maxilla between the palatine process and the pars palatina." [AAO:LAP] comment: Alternative more fish orientated definition: A fossa that is a depression in the proximal end of the maxilla involved in articulation with the palatine [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]. [PHENOSCAPE] synonym: "maxillary saddle" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0002397 ! maxilla @@ -261893,6 +264020,7 @@ id: UBERON:3000653 name: pars glenoidalis of quadratojugal def: "Portion of the quadratojugal that makes contact dorsally with the distal portion of the squamosal." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011267 ! quadratojugal bone [Term] @@ -261900,6 +264028,7 @@ id: UBERON:3000654 name: pars jugalis def: "Anterior part of the quadratojugal that is in contact with the processus posterior of the maxilla." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0011267 ! quadratojugal bone [Term] @@ -261907,6 +264036,7 @@ id: UBERON:3000655 name: processus dorsalis of lamella alaris def: "Dorsal process of the lamella alaris located at the anterior end of the margo orbitalis; a narrow ligament that runs from the frontoparietal is attached to it." [AAO:LAP] synonym: "processus dorsailis" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -261915,6 +264045,7 @@ id: UBERON:3000656 name: processus posterodorsalis of lamella alaris def: "Posterior process of the lamella alaris." [AAO:LAP] synonym: "processus posterodorsalis" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000254 ! lamella alaris @@ -261923,6 +264054,7 @@ id: UBERON:3000657 name: dentigerous process def: "Tooth-bearing process of the vomer." [AAO:LAP] synonym: "torus dentigerous" RELATED [UBERON:3000657] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -261931,6 +264063,7 @@ id: UBERON:3000658 name: prechoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the postchoanal process occurs at the level of the dentigerous process." [AAO:LAP] synonym: "processus choanalis anterior" RELATED [UBERON:3000658] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -261939,6 +264072,7 @@ id: UBERON:3000659 name: postchoanal process def: "Process that extends laterally from the anterior process; its bifurcation from the prechoanal process occurs at the level of the dentigerous process." [AAO:LAP] synonym: "processus choanalis posterior" RELATED [UBERON:3000659] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -261947,12 +264081,14 @@ id: UBERON:3000660 name: margo choanalis def: "Margin between the prechoanal and postchoanal process. It bounds the fenestra endochoanalis." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0002396 ! vomer [Term] id: UBERON:3000661 name: crista vomeri def: "Ridge on the dorsal surface of the vomer that runs from the anterior to the postchoanal processes of the vomer; it takes part in the fixation of the bone to the lateral margin of the solum nasi." [AAO:LAP] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002396 ! vomer @@ -261961,6 +264097,8 @@ id: UBERON:3000662 name: processus posterior of parasphenoid def: "Posterior projection of the median part of the parsphenoid, which may extend over the posterior margins of the subotic alae." [AAO:LAP] synonym: "processus posterior" BROAD [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004745 ! parasphenoid @@ -261968,6 +264106,7 @@ relationship: part_of UBERON:0004745 ! parasphenoid id: UBERON:3000663 name: parahyoid is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -261975,6 +264114,7 @@ id: UBERON:3000664 name: hyoid plate def: "Azygous or paired bone that occurs on the ventral surface of the hyoid plate." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -261982,6 +264122,7 @@ id: UBERON:3000667 name: pars reuniens def: "Area of fusion of the ceratohyals." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005884 ! hyoid arch skeleton [Term] @@ -261989,6 +264130,7 @@ id: UBERON:3000668 name: hyoglossal sinus def: "Is the space along the anterior edge of the hyoid plate between the hyale and through which passes the hyoglossus muscle as it passes dorsally into the tongue." [PHENOSCAPE] comment: A anuran (frog) term +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0010272 ! hyoid apparatus relationship: part_of UBERON:3000664 ! hyoid plate @@ -261996,6 +264138,7 @@ relationship: part_of UBERON:3000664 ! hyoid plate [Term] id: UBERON:3000670 name: anterior process of hyoid apparatus +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010272 ! hyoid apparatus @@ -262006,6 +264149,7 @@ def: "Processes that flank the hyales laterally and extend anterolaterally from synonym: "processus alaris" RELATED [UBERON:3000671] synonym: "processus anterolateralis" RELATED [UBERON:3000671] synonym: "processus lateralis anterior" RELATED [UBERON:3000671] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3000664 ! hyoid plate @@ -262014,6 +264158,7 @@ id: UBERON:3000672 name: posterolateral process def: "Paired processes that extend posterolaterally from the posterolateral margin of the hyoid plate. These processes are formed as a result of new cartilaginous growth lateral to the basibranchial and hypobranchial plate." [AAO:LAP] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000664 ! hyoid plate [Term] @@ -262023,6 +264168,7 @@ def: "Cartilaginous, paired processes that extend posterolaterally from the post synonym: "cornua posteriores" RELATED [UBERON:3000673] synonym: "hyoid" RELATED [UBERON:3000673] is_a: UBERON:0004529 ! anatomical projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000664 ! hyoid plate [Term] @@ -262030,6 +264176,8 @@ id: UBERON:3000676 name: bronchial process def: "Paired processes that extend posteroventrally from the anterolateral margins of the cricoid ring." [AAO:LAP] synonym: "processus trachealis" RELATED [UBERON:3000676] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage @@ -262037,6 +264185,8 @@ relationship: part_of UBERON:0002375 ! cricoid cartilage id: UBERON:3000677 name: lateral process of cricoid cartilage synonym: "lateral process" BROAD [] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage @@ -262045,6 +264195,8 @@ id: UBERON:3000678 name: esophageal process def: "Median process located on the posterior end of the cricoid cartilage." [AAO:LAP] synonym: "spina oesophagea" RELATED [UBERON:3000678] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002375 ! cricoid cartilage @@ -262054,6 +264206,7 @@ name: manubrium of hyale def: "Proximal section of the hyale." [AAO:LAP] synonym: "processus anteriores" RELATED [UBERON:3000680] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000101 ! hyale [Term] @@ -262080,6 +264233,7 @@ name: processus confluens def: "Strip of cartilage that forms the lateral margin of the foramen nervi hypoglossi." [AAO:LAP] synonym: "processus alaris" RELATED [UBERON:3000687] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3000101 ! hyale [Term] @@ -262087,6 +264241,8 @@ id: UBERON:3000688 name: prominentia apicalis dorsalis def: "Anterior end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis anterior" RELATED [UBERON:3000688] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011769 ! cartilaginous projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001740 ! arytenoid cartilage @@ -262096,6 +264252,8 @@ id: UBERON:3000689 name: prominentia apicalis ventralis def: "Posterior (cardiac) end of the arytenoid cartilage." [AAO:LAP] synonym: "prominentia apicalis posterior" RELATED [UBERON:3000689] +is_a: UBERON:0004119 ! endoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0011769 ! cartilaginous projection is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001740 ! arytenoid cartilage @@ -262104,6 +264262,7 @@ relationship: part_of UBERON:0001740 ! arytenoid cartilage id: UBERON:3000692 name: pedicel def: "Paired stalks located dorsolateral to the vertebral centrum that provide support to the lateral margins of the neural arch laminae." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra @@ -262112,6 +264271,7 @@ id: UBERON:3000694 name: atlantal cotyle def: "Anterior, single or paired concave facets for articulation with the condyle(s) of the urostyle." [AAO:Francis_1934] synonym: "cavitas glenoidalis" RELATED [UBERON:3000694] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -262140,6 +264300,7 @@ relationship: part_of UBERON:0002412 ! vertebra id: UBERON:3000707 name: pleurapophysis def: "Paired processes that represent the rib attachments to the vertebra plus the ribs." [AAO:Duellman_and_Trueb_1994] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra @@ -262209,6 +264370,7 @@ is_a: UBERON:0001075 ! bony vertebral centrum id: UBERON:3000727 name: haemal arch lamina def: "Paired plates that form the haemal arch. The lateral margin of each lamina is firmly attached to the ventral surface of the caudal vertebral centrum and the medial end fuses to the medial end of the opposite lamina." [AAO:Pugener_2002] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006065 ! hemal arch @@ -262216,6 +264378,7 @@ relationship: part_of UBERON:0006065 ! hemal arch id: UBERON:3000728 name: nucal keel def: "Longitudinal process found in all cervical vertebrae, except the atlas, for the attachment of dorsal head musculature." [AAO:Duellman_and_Trueb_1994] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001092 ! vertebral bone 1 @@ -262229,6 +264392,7 @@ is_a: UBERON:0010276 ! space in vertebral column id: UBERON:3000735 name: mid-dorsal keel def: "Ridge-shaped structure present on the dorsomedial surface of the neural arch lamina; this structure is produced at the point of junction of the contralateral sides of each neural arch." [AAO:Pugener_2002] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003861 ! neural arch @@ -262246,6 +264410,7 @@ replaced_by: UBERON:0002498 id: UBERON:3000743 name: sacral condyle def: "Anterior, paired convex facets for articulation with the cotyle(s) of the urostyle." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003690 ! fused sacrum @@ -262254,6 +264419,7 @@ id: UBERON:3000744 name: urostyle cotyle def: "Anterior, single or paired concave facets for articulation with the sacral condyle(s)." [AAO:LAP] synonym: "fossa condyloidea ossis coccygei" RELATED [UBERON:3000744] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle @@ -262261,6 +264427,7 @@ relationship: part_of UBERON:0003106 ! urostyle id: UBERON:3000745 name: webbing of bone in vertebral column def: "In anurans, pair of bony plates that connect the posteromedial margins of the sacral diapophyses with the lateral margins of the anterior portion of the urostyle." [AAO:Pugener_and_Maglia_2008] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001130 ! vertebral column @@ -262269,6 +264436,7 @@ id: UBERON:3000746 name: urostyle ridge def: "Longitudinal crest on the dorsal side of the urostyle formed by the caudal neural arches." [AAO:Maglia_et_al_2007] synonym: "crista ossi coccygei" RELATED [UBERON:3000746] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0003106 ! urostyle @@ -262287,6 +264455,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000752 name: pars acromialis def: "Prominent structure (anteromedial head) that forms the anterior section of the ventral margin of the scapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula @@ -262295,6 +264464,7 @@ id: UBERON:3000753 name: pars glenoidalis of scapula def: "Concave structure (posteromedial head) that forms the posterior head of the ventral margin of the scapula. The pars glenoidalis articulates with the humerus, and comprises the dorsal portion of the glenoid fossa." [AAO:LAP] synonym: "glenoid head of scapula" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0006849 ! scapula @@ -262309,6 +264479,7 @@ id: UBERON:3000756 name: crista dorsalis humeri def: "Small hooked process on the dorsal aspect of the humeral shaft; it does not extend on to the glenoid head. The m subscapularis is inserted on it." [AAO:LAP] synonym: "crista dorsalis" RELATED [UBERON:3000756] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -262328,6 +264499,7 @@ synonym: "interclavicle" RELATED [UBERON:3000759] synonym: "prezonal element" RELATED [UBERON:3000759] synonym: "prezonal sternum" RELATED [UBERON:3000759] synonym: "sternum superior" RELATED [UBERON:3000759] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005181 ! thoracic segment organ is_a: UBERON:0010363 ! endochondral element is_a: UBERON:3000936 ! zonal element @@ -262352,6 +264524,7 @@ id: UBERON:3000763 name: epicoracoid bridge def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project anteriorly. They articulate anteriorly with the omosternum." [AAO:LAP] synonym: "procoracoid bridge" RELATED [UBERON:3000763] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid @@ -262371,6 +264544,7 @@ id: UBERON:3000773 name: ilial ridge def: "Longitudinal crest on the dorsal side of the shaft of the ilium." [AAO:LAP] synonym: "ala ossis ilei" RELATED [UBERON:3000773] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000774 ! ilial shaft @@ -262379,6 +264553,7 @@ id: UBERON:3000774 name: ilial shaft def: "Anterior rod that articulates with the sacrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001273 ! ilium [Term] @@ -262398,6 +264573,7 @@ is_a: UBERON:3000755 ! pectoral girdle opening id: UBERON:3000777 name: epicoracoid horn def: "A pair of cartilaginous expansions (one from each epicoracoid cartilage) that project posteriorly. They articulate with the sternum by means of grooves, pouches or fossae in the dorsal surface of the sternum and provide a site for the insertion of a pair of muscles derived from the m. rectus abdominis." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000762 ! epicoracoid @@ -262419,6 +264595,7 @@ is_a: UBERON:3000755 ! pectoral girdle opening id: UBERON:3000780 name: incisura coracoidea def: "Notch that separates the cartilaginous regions of the procoracoid and coracoid." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula @@ -262427,6 +264604,7 @@ id: UBERON:3000783 name: fovea capitis of humerus def: "Ovoid roughened pit, which is situated a little below and behind the center of the head, and serves as a site of attachment for ligaments." [AAO:LAP] comment: Not to be confused with the fovea capitis of the femur +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0006801 ! proximal head of humerus @@ -262436,6 +264614,7 @@ name: ulnar condyle def: "Semi-elliptical ball located at the lower end of the humerus, adjacent to the humeral ball." [AAO:LAP] synonym: "medial condyle" RELATED [UBERON:3000784] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000976 ! humerus [Term] @@ -262444,12 +264623,14 @@ name: trochlear groove of humerus def: "Furrow between the humeral head and the ulnar condyle." [AAO:LAP] synonym: "trochlear sulcus of humerus" EXACT [] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:3000786 name: fossa cubitalis ventralis def: "Depresion on the distal end of the humerus, just anterior to the humeral head, in which the end of the radius fits when the forelimb is flexed." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus @@ -262458,6 +264639,7 @@ id: UBERON:3000787 name: collum antibrachii def: "In a fused radio-ulna, the proximal portion of the compound bone (where the sulcus longitudinalis is barely evident or absent) is a cylindrical pillar." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006715 ! radio-ulna relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton @@ -262465,7 +264647,9 @@ relationship: part_of UBERON:0010703 ! forelimb zeugopod skeleton id: UBERON:3000792 name: anterior ramus of cleithrum def: "Subdivision of the cleithrum that extends along the anterior edge of the suprascapula." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -262496,6 +264680,7 @@ is_a: UBERON:0003861 ! neural arch id: UBERON:3000798 name: presacral shield def: "Dorsal, dermal plate of bone that overlies the presacral vertebrae. Such shield usually has irregular, sculptured surfaces, frequently is broadly expanded, and may be composed of several separate plates." [AAO:Trueb_1973] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0009568 ! trunk region of vertebral column @@ -262503,6 +264688,7 @@ relationship: part_of UBERON:0009568 ! trunk region of vertebral column id: UBERON:3000799 name: cartilago paraglenoidalis def: "Strip of cartilage that separates the coracoid from the scapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262518,6 +264704,7 @@ relationship: part_of UBERON:0001092 ! vertebral bone 1 id: UBERON:3000801 name: caput glenoidale def: "Convex articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum @@ -262525,6 +264712,7 @@ relationship: part_of UBERON:0001075 ! bony vertebral centrum id: UBERON:3000802 name: fossa glenoidalis def: "Concave articular facet of the vertebral centrum for the articulation with the adjacent centrum." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001075 ! bony vertebral centrum @@ -262532,6 +264720,7 @@ relationship: part_of UBERON:0001075 ! bony vertebral centrum id: UBERON:3000803 name: sulcus articularis lateralis def: "In a zygapophysis that has ridges and sulci, the lateral canal between the carina distalis and the carina medialis." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -262539,6 +264728,7 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000804 name: sulcus articularis medialis def: "In a zygapophysis that has ridges and sulci, the medial canal between the carina medialis and the carina proximalis." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -262546,6 +264736,7 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000805 name: carina proximalis def: "In a zygapophysis that has ridges and sulci, the proximal ridge." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -262553,6 +264744,7 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000806 name: carina medialis def: "In a zygapophysis that has ridges and sulci, the medial ridge." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -262560,6 +264752,7 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000807 name: carina distalis def: "In a zygapophysis that has ridges and sulci, the distal ridge." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006062 ! zygapophysis @@ -262567,6 +264760,7 @@ relationship: part_of UBERON:0006062 ! zygapophysis id: UBERON:3000808 name: parasagittal processes def: "Paired, posteriorly directed process at the posterior margin of each neural arch lamina." [AAO:Cannatella_1985] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003861 ! neural arch @@ -262574,6 +264768,7 @@ relationship: part_of UBERON:0003861 ! neural arch id: UBERON:3000809 name: accessory articulation def: "Paired, additional vertebral articulations located medial to the intervertebral space, adjacent to the vertebral centrum." [AAO:Cannatella_1985] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002412 ! vertebra @@ -262581,6 +264776,7 @@ relationship: part_of UBERON:0002412 ! vertebra id: UBERON:3000810 name: fissura sagittalis def: "Medial groove in the longitudinal ridge of the urostyle formed by the incomplete dorsal fusion of the caudal neural arches." [AAO:Maglia_et_al_2007] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:3000746 ! urostyle ridge @@ -262590,12 +264786,14 @@ name: glenoid end of clavicle def: "Lateral end of the clavicle, which usually lies in close proximity to the pars acromialis of the scapula, and occassionally may fuse to it." [AAO:LAP] synonym: "extremitas glenoidalis" RELATED [UBERON:3000811] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:3000813 name: sulcus pro cartilagine praecoracoidealis def: "Canal on the posterior aspect of the clavicle that accomodates the anterior margin of the procoracoid cartilage." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001105 ! clavicle bone @@ -262619,6 +264817,7 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:3000816 name: margo fenestralis def: "Anterior margin of the coracoid, which forms the posterior edge of the pectoral fenestra." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004743 ! coracoid bone @@ -262626,6 +264825,7 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:3000817 name: margo posterior def: "Posterior margin of the coracoid." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004743 ! coracoid bone @@ -262633,6 +264833,7 @@ relationship: part_of UBERON:0004743 ! coracoid bone id: UBERON:3000818 name: margo anterior of scapula def: "Anterior margin of the scapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262640,6 +264841,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000819 name: margo clavicularis def: "Inferior margin of the pars acromialis of the scapula, which articulates with the clavicule." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262647,6 +264849,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000820 name: margo posterior of scapula def: "Posterior margin of the scapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262654,6 +264857,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000821 name: margo suprascapularis def: "Superior margin of the scapula, which articulates with the suprascapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262661,6 +264865,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000822 name: pars suprascapularis def: "Superior portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262668,6 +264873,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000823 name: sinus interglenoidalis def: "Notch or indentation between the pars glenoidalis and pars acromialis of the scapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0006849 ! scapula @@ -262675,6 +264881,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000824 name: tenuitas cristaeformis def: "Leading (anterior) portion of the scapula, which is thinner than the rest of the shaft." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0006849 ! scapula @@ -262682,6 +264889,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:3000825 name: crista longitudinalis scapula def: "Longitudinal ridge on the medial (inner) face of the scapula." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0006849 ! scapula @@ -262690,6 +264898,8 @@ id: UBERON:3000827 name: margo anterior of cleithrum def: "Anterior margin of the anterior ramus of the cleithrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -262697,6 +264907,8 @@ id: UBERON:3000828 name: margo posterior of cleithrum def: "Posterior margin of the posterior ramus of the cleithrum." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -262704,6 +264916,8 @@ id: UBERON:3000829 name: margo scapularis def: "Lateral margin of the suprascapula, which articulates with the scapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -262711,12 +264925,16 @@ id: UBERON:3000830 name: margo vertebralis def: "Medial margin of the suprascapula, which lies dorsal to the vertebral column." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:3000831 name: spina acromioidea def: "Small process of the lamina recurvata that extends laterally toward the scapular-suprascapular articulation." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004741 ! cleithrum @@ -262725,12 +264943,15 @@ id: UBERON:3000832 name: anterior lamina recurvata def: "Portion of the anterior ramus of the cleithrum that invest the anterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:3000833 name: sinus dorsalis def: "Notch or indentation between the anterior and posterior rami of the cleithrum." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004741 ! cleithrum @@ -262738,13 +264959,16 @@ relationship: part_of UBERON:0004741 ! cleithrum id: UBERON:3000834 name: posterior lamina recurvata def: "Portion of the posterior ramus of the cleithrum that invests the posterior margin of the suprascapula, extending onto its dorsal surface." [AAO:LAP] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] id: UBERON:3000836 name: crista lateralis humeri def: "Ridge on the lateral aspect of the humeral shaft located just anterior to the radial (lateral) epicondyle." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -262752,6 +264976,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:3000837 name: crista medialis humeri def: "Ridge on the medial aspect of the humeral shaft that extends from the level of the middle portion of the shaft to ulnar (medial) epicondyle." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -262759,6 +264984,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:3000839 name: crista radii def: "Small ridge on the lateral aspect of the radial shaft, located at the level of the collum antibrachii." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone @@ -262766,6 +264992,7 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:3000840 name: capitulum of radius def: "Lateral portion of the proximal (upper) articular surface of the radius that consists of an eminence with a rounded apex." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001423 ! radius bone @@ -262780,6 +265007,7 @@ replaced_by: UBERON:3000840 id: UBERON:3000842 name: capitulum ulnae def: "Small eminence on the distal articular head of the ulna." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0001424 ! ulna @@ -262788,6 +265016,7 @@ id: UBERON:3000844 name: sulcus longitudinalis def: "In a fused radio-ulna, longitudinal furrow that demarcates the area of fusion of both elements. This sulcus is deep in the distal portion of the compound bone, but barely evident or absent at the proximal end." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006715 ! radio-ulna [Term] @@ -262795,6 +265024,7 @@ id: UBERON:3000846 name: element Y of fore mesopodium def: "Oval carpal element that is located on the anteromedial side of the radiale and the anterolateral side of the ulnare. Anteriorly, it articulates with carpals 1 through 4 (or 2 through 5 according to some authors). It is also recognized as centrale by some authors. This element originates from one, two, or three condensation centers. Occasionally it may fuse to carpal 2(1), carpal 3(2), the ulnare, or other elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009880 ! carpal skeleton [Term] @@ -262808,6 +265038,7 @@ relationship: part_of UBERON:0002389 ! manual digit id: UBERON:3000859 name: foramen perforans carpi def: "Opening for the passage of the perforans carpi artery from the ventral to the dorsal side. It perforates the compound ulnare + intermedium." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:3000856 ! intercalary element of fore digit @@ -262815,6 +265046,7 @@ relationship: part_of UBERON:3000856 ! intercalary element of fore digit id: UBERON:3000862 name: pubo-ischium def: "Composite element formed by the fusion of the ischium and pubis." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0010363 ! endochondral element relationship: has_fused_element UBERON:0001274 ! ischium @@ -262826,12 +265058,14 @@ id: UBERON:3000865 name: epileon def: "Dorsal extremity of the ilial shaft, which remains cartilaginous." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft [Term] id: UBERON:3000866 name: agger limitans anterior of ilium def: "Shelf-like expansion of the ilial corpus that forms the anterior border of the acetabulum." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006802 ! acetabular rim @@ -262840,6 +265074,7 @@ id: UBERON:3000867 name: agger limitans anterior of ischium def: "Shelf-like expansion of the ischium that forms the posterior border of the acetabulum." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium [Term] @@ -262857,6 +265092,7 @@ name: ilial protuberance def: "Small, dorsolaterally projecting knob located just anterior to the supra-acetabular expansion and about the level of the anterior border of the acetabulum." [AAO:LAP] synonym: "dorsal protuberance" RELATED [UBERON:3000869] synonym: "tuber superior" RELATED [UBERON:3000869] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:3000774 ! ilial shaft @@ -262866,6 +265102,7 @@ name: preacetabular expansion def: "Ventral portion of the ilial corpus, located anteroventral to the acetabulum." [AAO:LAP] synonym: "pars descendens ilei" RELATED [UBERON:3000870] synonym: "ventral acetabular expansion" RELATED [UBERON:3000870] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0010747 ! body of ilium @@ -262874,6 +265111,7 @@ id: UBERON:3000871 name: fossula tuberis superioris def: "Small depression dorsal to the proximal portion of the collum ilei and ventral to the ilial protuberance." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0010747 ! body of ilium [Term] @@ -262881,6 +265119,7 @@ id: UBERON:3000872 name: collum ilei def: "Cyllindrical pillar that originates anterior to the acetabulum and extends to the ilial shaft." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0010747 ! body of ilium [Term] @@ -262888,12 +265127,14 @@ id: UBERON:3000873 name: pars cylindriformis ilei def: "Elongate, cylindrical structure on the ventral side of the shaft of the ilium that extends through its entire length." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft [Term] id: UBERON:3000874 name: crista ischii def: "Crest on the posterior side of the ischium, which may also extend to the posteroventral aspect of pubis." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -262901,6 +265142,7 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:3000875 name: spina pelvis posterior def: "Small, rounded process on the anterodorsal margin of the ischium, just posterior to the area of articulation with the ilium." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -262908,6 +265150,7 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:3000876 name: spina pelvis anterior def: "Small, rounded process on the anteroventral margin of the preacetabular expansion of the ilial corpus." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0010747 ! body of ilium @@ -262916,12 +265159,14 @@ id: UBERON:3000877 name: intumescentia bilateralis inferior def: "Small protuberance on the ischium, located close to its posteroventral margin." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:3000878 name: intumescentia bilateralis superior def: "Small protuberance on the ischium, located at the level of the superior margin of the acetabulum and close to its posterior margin." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -262930,12 +265175,14 @@ id: UBERON:3000879 name: incisura terminalis def: "Small indentation on the posterior margin of the ischium, ventral to the intumescentia bilateralis superior." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001274 ! ischium [Term] id: UBERON:3000880 name: crista hypertrophica ischium def: "Large protuberance on the dorsal aspect of the ischium that extends from the ischio-ilium articulation to the spina pelvis posterior." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001274 ! ischium @@ -262943,6 +265190,7 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:3000882 name: interilial region def: "Area of convergence of the ilial shafts. When the preacetabular ilium is narrow, the interilial configuration is V-shaped or narrowly rounded, whereas when the interilial region is broadly expanded the interilial configuration is U-shaped." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001273 ! ilium @@ -262951,6 +265199,7 @@ id: UBERON:3000883 name: recessus coccygealis def: "Area dorsal to the pelvic girdle symphysis, between the dorsal portions of the ilial corpora, where lies the posterior terminus of the urostyle." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:3000774 ! ilial shaft [Term] @@ -262958,6 +265207,7 @@ id: UBERON:3000884 name: epipubis def: "Small prepubic element formed by a plate of cartilage (which may calcify in the adult) that is synchondrotically united with the pubis." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -262977,6 +265227,7 @@ synonym: "cartilago epipubes" RELATED [UBERON:3000886] synonym: "cartilago marsupial" RELATED [UBERON:3000886] synonym: "cartilago ypsiloidea" RELATED [UBERON:3000886] synonym: "cartilago ypsiloides" RELATED [UBERON:3000886] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -262986,6 +265237,7 @@ id: UBERON:3000894 name: femoral ridge def: "Low crest that arises just behind the acetabular head and extends distally for about one-third the length of the femoral shaft." [AAO:LAP] synonym: "crista femoris" RELATED [UBERON:3000894] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -262999,6 +265251,7 @@ is_obsolete: true id: UBERON:3000896 name: foveal depression def: "Ovoid roughened pit situated on the dorsal and anteroventral surface of the acetabular head wherein the ligaments attaching the bone to the acetabulum are inserted." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0006767 ! head of femur @@ -263006,6 +265259,7 @@ relationship: part_of UBERON:0006767 ! head of femur id: UBERON:3000898 name: trochanteric crest def: "Paired ridges on the ventral surface of the femoral shaft that run toward the femoral trochanter; the posterior crest is less developed." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -263013,6 +265267,7 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:3000903 name: tibial crest def: "Ridge that arises from the dorso-masial side of the extensor surface of the tibia. It receives the insertion of the tendon of the extensor ilio-tibialis muscle." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000979 ! tibia @@ -263021,6 +265276,7 @@ id: UBERON:3000904 name: apophysis distalis of tibiofibula def: "Swelling on the extensor surface of the distal head of the tibiofibula." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -263028,6 +265284,7 @@ id: UBERON:3000905 name: caput ossis cruris def: "Proximal head of the tibiofibula that articulates with the distal head of the femur." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -263035,6 +265292,7 @@ id: UBERON:3000906 name: sulcus pro musculo extensori cruris brevis def: "Small canal on the proximal head of to the tibiofibula, lateral to the apophysis distalis, for the insertion of the cruris brevis muscle." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -263042,6 +265300,7 @@ id: UBERON:3000907 name: eminentia arcuata def: "Small crest on the extensor surface of the proximal head of the tibiofibula (tibial side)." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -263049,6 +265308,7 @@ id: UBERON:3000908 name: sulcus distalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the distal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -263056,6 +265316,7 @@ id: UBERON:3000909 name: sulcus proximalis ossis cruris def: "In a fused tibiofibula, longitudinal furrow in the proximal portion of the compound bone that demarcates the area of fusion of both elements." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0006714 ! tibiofibula [Term] @@ -263067,6 +265328,7 @@ is_obsolete: true id: UBERON:3000911 name: foramen nutritium exterius def: "Foramen for the tibial artery and vein and the deep peroneal nerve; it pierces through the midpoint of the shaft of the tibiofibula." [AAO:LAP] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0006714 ! tibiofibula @@ -263074,6 +265336,7 @@ relationship: part_of UBERON:0006714 ! tibiofibula id: UBERON:3000915 name: spatium intertarsale def: "Separation of the tibiale and fibulare along their longitudinal axia." [AAO:LAP] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0004454 ! tarsal region @@ -263082,6 +265345,7 @@ id: UBERON:3000916 name: apophysis proximalis def: "Swelling on the extensor surface of the proximal compound head of the tibiale and fibulare." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -263089,6 +265353,7 @@ id: UBERON:3000917 name: apophysis distalis of tibiale fibulare def: "Swelling on the extensor surface of the distal compound head of the tibiale and fibulare." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -263103,6 +265368,7 @@ id: UBERON:3000922 name: prehallux skeleton def: "One to three or four elements located ventral and medial to the metatarsal of digit I. When more than one elements are present, they are smaller than the proximal prehallux." [AAO:LAP] synonym: "prehallux" BROAD [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision relationship: part_of UBERON:0009879 ! tarsal skeleton relationship: part_of UBERON:0012136 ! prehallux @@ -263120,6 +265386,7 @@ id: UBERON:3000934 name: foramen perforans tarsi def: "Small opening between the centrale and fibulare that allows the perforans tarsi artery to pass from the ventral to the dorsal side of the ankle." [AAO:LAP] is_a: UBERON:0004111 ! anatomical conduit +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -263193,7 +265460,9 @@ id: UBERON:3000948 name: articular process def: "Paired processes located on the anterior end of the cricoid cartilage." [AAO:LAP] synonym: "processus articularis anterior" RELATED [UBERON:3000948] +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0002375 ! cricoid cartilage [Term] @@ -263201,6 +265470,8 @@ id: UBERON:3000949 name: posterior ramus of cleithrum def: "Laminar subdivision of the cleithrum that extends along the ventral (lateral) midbody of the suprascapula." [AAO:LAP] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -263213,6 +265484,7 @@ synonym: "os triquetum" RELATED [UBERON:3000950] synonym: "sternum" RELATED [UBERON:3000950] synonym: "urohyal" RELATED [UBERON:3000950] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263220,6 +265492,7 @@ id: UBERON:3000951 name: anterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. These elements contitute the hypohyals." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263227,6 +265500,7 @@ id: UBERON:3000952 name: posterior radial def: "Paired, horn-like processes of basibranchial I that protrude in an antero-dorso-lateral direction, being more or less embedded in the tongue musculature. They arise secondarily during metamorphosis, and are therefore not strictly part of the visceral skeleton." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263242,6 +265516,7 @@ id: UBERON:3000954 name: hypobranchial I def: "Paired bar that articulates with basibranchial I. It forms the anterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263250,6 +265525,7 @@ name: ceratobranchial I def: "Paired bar that articulates with, or is fused to, hypobranchial I. It forms the posterior portion of the posterior cornu of the hyoid." [AAO:Francis_1934] synonym: "epibranchial" RELATED [UBERON:3000955] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263257,6 +265533,7 @@ id: UBERON:3000956 name: hypobranchial II def: "Paired bar that articulates anteriorly with basibranchial I and posteriorly with ceratobranchials II--IV." [AAO:Duellman_and_Trueb_1994] is_a: UBERON:0002513 ! endochondral bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0010272 ! hyoid apparatus [Term] @@ -263320,6 +265597,7 @@ relationship: part_of UBERON:0002100 ! trunk id: UBERON:3000981 name: limb external integument structure def: "Dermal, epidermal, glandular and pigment structures of the limb integument." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: part_of UBERON:0002101 ! limb @@ -263329,6 +265607,7 @@ relationship: part_of UBERON:0002101 ! limb id: UBERON:3000982 name: tail external integument structure def: "Dermal, epidermal, glandular and pigment structures of the tail integument." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:3000961 ! external integument structure intersection_of: UBERON:3000961 ! external integument structure intersection_of: part_of UBERON:0007812 ! post-anal tail @@ -263372,6 +265651,7 @@ id: UBERON:3000998 name: suprarostral cartilage def: "Larval upper jaws articulate with trabecular horns." [AAO:EJS] is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0001708 ! jaw skeleton @@ -263400,6 +265680,7 @@ is_a: UBERON:0010721 ! distal tarsal bone [Term] id: UBERON:3001003 name: cloacal fold +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:3000977 ! body external integument structure relationship: part_of UBERON:0000162 ! cloaca @@ -263569,6 +265850,7 @@ relationship: part_of UBERON:0009880 ! carpal skeleton id: UBERON:3010061 name: anterior quadratocranial commissure def: "Cartilage that bridges palatoquadrate to ethmoid region." [AAO:EJS] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -263596,6 +265878,7 @@ id: UBERON:3010069 name: intermedium (fore) def: "Quadrangular cartilage or bone lying between the preaxial radiale and the postaxial ulnare in the proximal level of the mesopodium." [AAO:EJS] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009880 ! carpal skeleton [Term] @@ -263649,6 +265932,7 @@ is_a: UBERON:0010890 ! pelvic complex muscle [Term] id: UBERON:3010079 name: upper eyelid protuberances +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001712 ! upper eyelid @@ -263700,6 +265984,7 @@ is_a: UBERON:0010890 ! pelvic complex muscle [Term] id: UBERON:3010091 name: upper lip protuberances +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:3000972 ! head external integument structure relationship: part_of UBERON:0001834 ! upper lip @@ -263708,6 +265993,7 @@ id: UBERON:3010092 name: basitrabecular process def: "A process of the otic capsule that will bridge to the palatoquadrate basal process." [AAO:EJS] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4200139 ! palatoquadrate element [Term] @@ -263721,6 +266007,7 @@ relationship: part_of UBERON:3000977 ! body external integument structure id: UBERON:3010094 name: quadratoethmoid process def: "Process that projects from anterior margin of commissure as site of attachment for quadratoethmoid ligament." [AAO:EJS] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:3010061 ! anterior quadratocranial commissure @@ -263817,6 +266104,7 @@ id: UBERON:3010118 name: quadrato-orbital commissure def: "Cartilage that bridges palatoquadrate muscular process to dorsal orbitonasal plate." [AAO:EJS] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4200139 ! palatoquadrate element [Term] @@ -263894,6 +266182,7 @@ id: UBERON:3010138 name: trabecular horn def: "Anterior extensions." [AAO:curator] synonym: "trabecular horns" RELATED [UBERON:3010138] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0011241 ! ethmoid region @@ -263908,6 +266197,7 @@ relationship: part_of UBERON:3000993 ! otic and occipital id: UBERON:3010144 name: odontoids def: "Toothlike processes found on the mandible of some anurans; can be formed by dentary or dentary + mentomeckelian bones; odontoids lack enamel and dentine present in true teeth." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001710 ! lower jaw region @@ -264090,6 +266380,7 @@ id: UBERON:3010194 name: mediale def: "A recurrent variant of salamanders; a rhomboidal cartilage lying immediately postaxial from the centrale or centrale 1." [AAO:EJS] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0009879 ! tarsal skeleton [Term] @@ -264103,6 +266394,7 @@ relationship: located_in UBERON:0001707 ! nasal cavity id: UBERON:3010197 name: lateral recess def: "A part of the inferior cavity of the olfactory organ, found in anurans." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001707 ! nasal cavity @@ -264142,6 +266434,7 @@ id: UBERON:3010205 name: postminimus def: "A rounded cartilage lying in the postaxial margin of the mesopodium, adjacent to the distal end of the fibulare." [AAO:EJS] comment: Often consider atavistic when present in extant salamnders (Caudata) +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0007844 ! cartilage element relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -264218,6 +266511,7 @@ name: Nobelian rod def: "Either of a pair of cartilaginous rods that support the intromittent organ of male Ascaphus, and are attached to the posteroventral part of the pelvic girdle." [AAO:EJS, http://orcid.org/0000-0002-6601-2165, http://purl.obolibrary.org/obo/uberon/tracker/200] synonym: "Nobelian bone" RELATED [] synonym: "Nobelian element" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element @@ -264238,6 +266532,7 @@ is_a: UBERON:3000972 ! head external integument structure [Term] id: UBERON:3010243 name: ventricular musculature +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002082 ! cardiac ventricle @@ -264263,6 +266558,7 @@ is_a: UBERON:0008811 ! intromittent organ [Term] id: UBERON:3010262 name: capitulum of radio-ulna +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0006715 ! radio-ulna @@ -264675,6 +266971,7 @@ relationship: part_of UBERON:0008897 ! fin [Term] id: UBERON:3010392 name: mesonephric early proximal tubule +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule @@ -264684,6 +266981,7 @@ name: mesonephric late distal segment def: "The site of bicarbonate resorption in the adult kidney. It is equivalent to the convoluted distal segment of metanephric nephrons." [Xenbase] synonym: "DT1" EXACT [UBERON:3010393] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0000083 ! mesonephric tubule [Term] @@ -264694,6 +266992,7 @@ synonym: "opisthonephros" RELATED [UBERON:3010394] synonym: "proximal straight segment" RELATED [UBERON:3010394] synonym: "proximal tubule 3" EXACT [UBERON:3010394] synonym: "PT3" EXACT [UBERON:3010394] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0006553 ! renal duct relationship: part_of UBERON:0000083 ! mesonephric tubule @@ -264741,6 +267040,7 @@ is_obsolete: true [Term] id: UBERON:3010431 name: archenteron floor +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron @@ -264748,6 +267048,7 @@ relationship: part_of UBERON:0004735 ! archenteron id: UBERON:3010432 name: archenteron roof synonym: "gastrocoel roof" EXACT [UBERON:3010432] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0004735 ! archenteron @@ -264808,6 +267109,7 @@ is_a: UBERON:0004879 ! marginal zone of embryo [Term] id: UBERON:3010455 name: blastopore lip +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000100 ! blastopore @@ -264830,24 +267132,28 @@ name: suprarostral ala synonym: "ala" BROAD [] synonym: "alae" RELATED PLURAL [] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:3000998 ! suprarostral cartilage [Term] id: UBERON:3010463 name: animal cap synonym: "animal ectoderm" RELATED [UBERON:3010463] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:3010464 name: animal cap inner layer +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap [Term] id: UBERON:3010465 name: animal cap outer layer +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:3010463 ! animal cap @@ -264856,6 +267162,7 @@ id: UBERON:3010489 name: muscular artery def: "Part of the external carotid which delivers blood to the mm rectus cervicis and interhyoideus posterior." [AAO:BJB] is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001070 ! external carotid artery relationship: supplies UBERON:3010654 ! rectus cervicis @@ -264865,6 +267172,7 @@ name: lateral pretrosal artery def: "Part of the internal carotid which supplies blood to the ear and branches to two additional arteries." [AAO:BJB] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0020550 ! auricular blood vessel relationship: part_of UBERON:0001532 ! internal carotid artery relationship: supplies UBERON:0001690 ! ear @@ -264875,6 +267183,7 @@ name: mandibular artery def: "Part of lateral pretrosal artery which supplies blood to the roof of the mouth." [AAO:BJB] is_a: UBERON:0003496 ! head blood vessel is_a: UBERON:0004573 ! systemic artery +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:3010494 ! lateral pretrosal artery relationship: supplies UBERON:0007375 ! roof of mouth @@ -264987,6 +267296,7 @@ is_a: UBERON:3000051 ! braincase and otic capsule opening id: UBERON:3010528 name: articular process of palatoquadrate is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004752 ! palatoquadrate cartilage [Term] @@ -264994,6 +267304,7 @@ id: UBERON:3010529 name: ovisac alt_id: UBERON:3010782 def: "Part of the ovary consisting of a thin sheath of connective tissue enclosing the ovarian follicles." [AAO:BJB] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0005156 ! reproductive structure relationship: part_of UBERON:0000992 ! ovary @@ -265018,6 +267329,7 @@ id: UBERON:3010541 name: median pars intermedia def: "Region of the adenohypophysis which secretes melanophore-stimulating hormone, affecting the integumentary chromatophores." [AAO:BJB] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002196 ! adenohypophysis [Term] @@ -265068,6 +267380,7 @@ replaced_by: CL:0000222 [Term] id: UBERON:3010557 name: triangular process +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:3010138 ! trabecular horn @@ -265079,6 +267392,7 @@ is_a: UBERON:0011648 ! jaw muscle [Term] id: UBERON:3010559 name: retroarticular process of the palatoquadrate +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:4200139 ! palatoquadrate element @@ -265086,6 +267400,7 @@ relationship: part_of UBERON:4200139 ! palatoquadrate element id: UBERON:3010560 name: anterior process of the palatoquadrate is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4200139 ! palatoquadrate element [Term] @@ -265134,6 +267449,7 @@ is_a: UBERON:0004740 ! basibranchial bone id: UBERON:3010584 name: mandibular arch neural crest def: "Anterior most migratory stream of cranial neural crest." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0003099 ! cranial neural crest @@ -265162,6 +267478,7 @@ relationship: part_of UBERON:0003099 ! cranial neural crest id: UBERON:3010589 name: cloacal papilla def: "A small, ridge-like projection from the antero-ventral wall of the cloacal chamber." [AAO:BMZ] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000162 ! cloaca @@ -265216,6 +267533,7 @@ replaced_by: UBERON:0012451 id: UBERON:3010613 name: laryngo-tracheal chamber def: "Muscular vestibule between the pharynx and lungs, lying between the posterior cornua of the hyoid." [AAO:BMZ] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001737 ! larynx @@ -265373,6 +267691,7 @@ relationship: part_of UBERON:0000348 ! ophthalmic nerve id: UBERON:3010653 name: ramus nasalis medialis def: "Ramule of ophthalmic nerve (see also ramus nasalis lateralis). First branch gives rise to two ramules that border the naris and innervate the surrounding tissue." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000348 ! ophthalmic nerve @@ -265440,6 +267759,7 @@ relationship: part_of UBERON:0001645 ! trigeminal nerve id: UBERON:3010671 name: ramule palatonasalis def: "Descends and branches to the buccal roof where it anastomoses with the palatine ramus of the facial nerve." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000377 ! maxillary nerve @@ -265506,6 +267826,7 @@ is_a: UBERON:0010891 ! pectoral complex muscle id: UBERON:3010693 name: ramus posterior profundus of V3 def: "In the adult anuran, this innervates the muscles levator mandibulare internus and longus." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0000375 ! mandibular nerve @@ -265626,6 +267947,7 @@ is_obsolete: true [Term] id: UBERON:3010719 name: dilated medial process of metacarpal IV +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 @@ -265633,6 +267955,7 @@ relationship: part_of UBERON:0003648 ! metacarpal bone of digit 4 id: UBERON:3010720 name: ramus hyomandibularis def: "The posttrematic branch of the facial nerve, both motor and sensory in function." [AAO:CAM] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001647 ! facial nerve @@ -265665,6 +267988,7 @@ is_a: UBERON:0010891 ! pectoral complex muscle id: UBERON:3010726 name: ramus muscularis of glossopharyngeus nerve def: "Branchiomotor branch of the glossopharyngeus nerve innervating the m. subarcuales rectus I." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0000479 ! tissue relationship: innervates UBERON:3010659 ! subarcualis rectus I @@ -265707,6 +268031,7 @@ is_a: UBERON:0010891 ! pectoral complex muscle id: UBERON:3010735 name: ramus anterior of CN VIII def: "Formed by fibers from the anterior semicircular canal and sacculus." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001648 ! vestibulocochlear nerve @@ -265714,6 +268039,7 @@ relationship: part_of UBERON:0001648 ! vestibulocochlear nerve id: UBERON:3010736 name: ramus posterior of CN VIII def: "Composed of two rami: a short ventral ramus innervating the cochlea (lagena and papille basilar), and a long dorsal ramus innervating the posterior semicircular canal." [AAO:EJS] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001648 ! vestibulocochlear nerve @@ -265798,6 +268124,7 @@ is_a: UBERON:0010890 ! pelvic complex muscle id: UBERON:3010750 name: descending branch of the vagus nerve def: "Major branch of the vagus supplying parasympathetic innervation to viscera." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000479 ! tissue relationship: part_of UBERON:0000011 ! parasympathetic nervous system relationship: part_of UBERON:0001759 ! vagus nerve @@ -265806,6 +268133,7 @@ relationship: part_of UBERON:0001759 ! vagus nerve id: UBERON:3010751 name: ramus muscularis of vagus nerve def: "Motor nervous branch of the vagus innervating m. subarcualis rectus I." [AAO:CAM] +is_a: CARO:0000000 ! anatomical entity is_a: CARO:0001001 is_a: UBERON:0000479 ! tissue relationship: innervates UBERON:3010659 ! subarcualis rectus I @@ -265820,6 +268148,7 @@ is_obsolete: true id: UBERON:3010754 name: ramus recurrens def: "Branch of the vagus nerve that separates from the vagus well postcranially, then continues anteriorly to innervate the larynx." [AAO:EJS] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0001759 ! vagus nerve @@ -265927,6 +268256,7 @@ id: UBERON:3010790 name: muscle rectus abdominis superficialis def: "A component of the rectus abdominal muscle that is some taxa." [PHENOSCAPE] is_a: UBERON:0002461 ! anterior abdominal wall muscle +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002382 ! rectus abdominis muscle [Term] @@ -265935,6 +268265,7 @@ name: musculus rectus abdominis profundus def: "A component of the rectus abdominal muscle that is some taxa (see comment) forms a disctinct and separate muscle." [PHENOSCAPE] comment: In salamanders (Caudata) the m. rectus abdominis profundus is sometimes continuous with the m. rectus cervicis profundus. In extreme cases (family Plethodontidae) represents an undivided muscle that arises from the psoterior border of the ischium that proceds uninterrupted to the tongue pad. is_a: UBERON:0002461 ! anterior abdominal wall muscle +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0002382 ! rectus abdominis muscle [Term] @@ -265988,6 +268319,7 @@ is_a: UBERON:3010115 ! posterior lateral line nerve (PLLN) [Term] id: UBERON:3010802 name: courtship gland +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:3010604 ! cranial glands relationship: part_of UBERON:0001003 ! skin epidermis @@ -266030,6 +268362,7 @@ is_a: UBERON:0002358 ! peritoneum id: UBERON:3010820 name: suboccular arch is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0004752 ! palatoquadrate cartilage [Term] @@ -266042,6 +268375,7 @@ is_a: UBERON:0004752 ! palatoquadrate cartilage id: UBERON:3010824 name: processus triangularis of palatoquadrate cartilage synonym: "processus triangularis" BROAD [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0004752 ! palatoquadrate cartilage @@ -266050,6 +268384,7 @@ id: UBERON:3010827 name: anterior prenasal cartilage is_a: UBERON:0001823 ! nasal cartilage is_a: UBERON:0003933 ! cranial cartilage +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0006813 ! nasal skeleton [Term] @@ -266068,6 +268403,7 @@ is_a: UBERON:0006846 ! surface groove id: UBERON:3010830 name: spicule is_a: UBERON:0000064 ! organ part +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0005884 ! hyoid arch skeleton [Term] @@ -266147,6 +268483,7 @@ replaced_by: UBERON:0002364 id: UBERON:3011120 name: early proximal tubule synonym: "PT2" EXACT [UBERON:3011120] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0005309 ! pronephric nephron creation_date: 2011-04-20T05:19:55Z @@ -266155,6 +268492,7 @@ creation_date: 2011-04-20T05:19:55Z id: UBERON:3011121 name: late distal segment is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0005309 ! pronephric nephron creation_date: 2011-04-20T05:21:45Z @@ -266367,6 +268705,8 @@ name: vacuolated notochordal tissue def: "Connective tissue that is matrix-poor with large number of vacuolated cells." [PSPUB:0000170] synonym: "notochord proper" EXACT [VSAO:curator] is_a: UBERON:0002384 ! connective tissue +is_a: UBERON:0004120 ! mesoderm-derived structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:0002328 ! notochord [Term] @@ -266491,6 +268831,8 @@ name: limiting layer of elasmoid scale def: "Hypermineralized tissue lacking collagen (except Sharpey's fibres), developing in close proximity to the basal cells of the overlying epithelium." [PSPUB:0000170] comment: Not clear if this layer is acellular, making a tissue type for now. is_a: UBERON:0000479 ! tissue +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:4000070 ! elasmoid scale [Term] @@ -266568,6 +268910,7 @@ id: UBERON:4000119 name: non-mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is not mineralized." [PSPUB:0000170] synonym: "non-mineralized cartilage" EXACT [VSAO:curator] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue @@ -266575,6 +268918,7 @@ relationship: part_of UBERON:0011589 ! non-mineralized cartilage tissue id: UBERON:4000120 name: mineralized avascular GAG-rich matrix def: "Avascular GAG-rich matrix that is mineralized." [PSPUB:0000170] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000020 ! mineralized extracellular matrix is_a: UBERON:4000059 ! avascular GAG-rich matrix relationship: part_of UBERON:4000088 ! mineralized cartilage tissue @@ -266895,6 +269239,7 @@ relationship: part_of UBERON:0004765 ! skeletal element id: UBERON:4100004 name: ischial peduncle def: "Bony projection (peduncle) that is located on the posterior portion of the ilium, posterior to the acetabulum." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001274 ! ischium @@ -266955,6 +269300,7 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4100011 name: postacetabular buttress def: "A bony process at the distal margin of the acetabulum formed by the ischium and/or the ischial peduncle of the ilium." [PHENOSCAPE:AD] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001269 ! acetabular part of hip bone @@ -266963,6 +269309,7 @@ relationship: part_of UBERON:0001269 ! acetabular part of hip bone id: UBERON:4100012 name: postacetabular zone def: "Region of the ilium posterior and dorsal to the acetabulum." [PHENOSCAPE:AD] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001273 ! ilium @@ -266993,6 +269340,7 @@ id: UBERON:4100016 name: posterior process of ilium def: "A posteriorly directed bony projection from the ilium that is the attachment site of the iliofibularis muscle (see Sumida, 1997)." [PHENOSCAPE:AD] synonym: "posterior iliac process" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0001273 ! ilium @@ -267002,6 +269350,8 @@ id: UBERON:4100100 name: parasphenoid flange def: "Lateral expansion of the parasphenoid." [PHENOSCAPE:BC] synonym: "parasphenoid wing" BROAD [] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: part_of UBERON:0004745 ! parasphenoid @@ -267039,6 +269389,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 id: UBERON:4100114 name: anterior distal condyle of femur def: "Anatomical projection in the distal region of the femur." [PHENOSCAPE:NI] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -267056,6 +269407,7 @@ relationship: part_of UBERON:0004704 ! bone fossa id: UBERON:4100116 name: posterior distal condyle of femur def: "Anatomical projection in the posterior/distal region of the femur." [PHENOSCAPE:NI] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 @@ -267097,6 +269449,7 @@ name: thagomizer def: "The distinctive arrangement of four to ten spikes on the tails of stegosaurid dinosaurs. These spikes are believed to have been a defensive measure against predators." [https://en.wikipedia.org/wiki/Thagomizer] comment: The arrangement of spikes originally had no distinct name; the term Thagomizer was coined in 1982 by cartoonist Gary Larson in his comic 'The Far Side', and thereafter became gradually adopted as an informal term within scientific circles, research, and education. {xref="https://en.wikipedia.org/wiki/Thagomizer"} synonym: "tail spikes" BROAD [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034768 ! morphological feature relationship: only_in_taxon NCBITaxon:436486 ! Dinosauria relationship: part_of UBERON:0007812 ! post-anal tail @@ -267105,6 +269458,7 @@ relationship: part_of UBERON:0007812 ! post-anal tail id: UBERON:4200000 name: medial blade of ilium def: "The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues." [PHENOSCAPE:ad] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0010746 ! iliac blade @@ -267114,6 +269468,7 @@ id: UBERON:4200001 name: postpubis def: "The region of the pubis posterior to the acetabulum." [PHENOSCAPE] comment: In some non-avian reptile this terminology refers to a distinct rear facing process of the pubis. In avians and some closely related theropod taxa this term is used to denote the pubis itself which has been rotated to face backwards. +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -267138,6 +269493,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200004 name: intertrochanteric fossa def: "Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -267164,6 +269520,7 @@ id: UBERON:4200007 name: transverse pelvic ridge def: "The transverse pelvic ridge is a short crest directly anterior to, and not extending posterior to, the prominent supra-acetabular buttress from Pawley and Warren 2006." [PHENOSCAPE] is_a: UBERON:0000064 ! organ part +is_a: UBERON:0004120 ! mesoderm-derived structure relationship: part_of UBERON:0001273 ! ilium [Term] @@ -267173,6 +269530,7 @@ def: "Joint that articulates left and right clavicles." [PHENOSCAPE] synonym: "interclavicle joint" EXACT [] xref: PHENOSCAPE:wd is_a: UBERON:0008114 ! joint of girdle +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone @@ -267190,6 +269548,7 @@ name: ventral humeral ridge def: "A distinct bony ridge on ventralsurface of the humeral shaft that corresponds to the attachment site of the pectoralis muscle." [PHENOSCAPE] synonym: "pectoral process" RELATED [] xref: PHENOSCAPE:ad +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -267209,6 +269568,7 @@ id: UBERON:4200012 name: ectepicondylar flange def: "Flange present of the distal region of the humerus, associated with extensor musculature of forelimb." [PHENOSCAPE] xref: PHENOSCAPE:ni +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -267227,6 +269587,7 @@ relationship: part_of UBERON:0002495 ! long bone id: UBERON:4200014 name: lateral tuber of ulna def: "Projection on the lateral side of proximal part of the ulna." [PHENOSCAPE:NI] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001424 ! ulna @@ -267245,8 +269606,10 @@ relationship: part_of UBERON:0012142 ! pedal digitopodium region id: UBERON:4200016 name: postbranchial lamina def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004741 ! cleithrum @@ -267262,6 +269625,7 @@ id: UBERON:4200018 name: calcaneal tuber def: "An enlargement of the distal region of the calcaneum that corresponds to the attachment site for the foot extensor muscles." [PHENOSCAPE] xref: PHENOSCAPE:ad +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -267272,6 +269636,7 @@ id: UBERON:4200019 name: preacetabular process def: "Process on ilium located anteriorly to acetabulum." [PHENOSCAPE] xref: PHENOSCAPE:ad +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267281,6 +269646,7 @@ id: UBERON:4200020 name: suprascapular fossa def: "Fossa on the medial surface on the scapula above the glenoid." [PHENOSCAPE] xref: PHENOSCAPE:ad +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -267290,8 +269656,8 @@ id: UBERON:4200021 name: astragalus-calcaneum unit def: "Osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE] xref: PHENOSCAPE:NI -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000075 ! subdivision of skeletal system +is_a: UBERON:0004120 ! mesoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0001-5839-6798 relationship: has_component UBERON:0001450 ! calcaneus relationship: has_component UBERON:0002395 ! talus @@ -267325,6 +269691,7 @@ id: UBERON:4200025 name: ascending process of the astragalus def: "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly." [PHENOSCAPE:NI] xref: PHENOSCAPE:NI +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002395 ! talus @@ -267350,6 +269717,7 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200028 name: adductor blade def: "A prominent ridge in basal tetrapods on the ventral side of the femur that includes the fourth trochater, internal trochanter and the adductor crest (based on Coates, 1996)." [PHENOSCAPE:AD] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -267358,6 +269726,7 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200029 name: adductor crest def: "A bony crest on venteral side of femur that is the attachment site for the adductor muscles." [PHENOSCAPE:AD] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -267367,6 +269736,7 @@ relationship: part_of UBERON:4200028 ! adductor blade id: UBERON:4200030 name: antitrochanter def: "Raised surface at the posterior portion of the acetabulum (see Nesbitt, 2011)." [PHENOSCAPE:NI] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001269 ! acetabular part of hip bone @@ -267385,6 +269755,7 @@ id: UBERON:4200032 name: clavicle blade def: "Expanded and flattened ventral region of clavicle bone." [PHENOSCAPE] is_a: UBERON:0005055 ! zone of long bone +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001105 ! clavicle bone @@ -267392,7 +269763,9 @@ relationship: part_of UBERON:0001105 ! clavicle bone id: UBERON:4200033 name: cleithrum head def: "Expanded dorsal region of the cleithrum." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004741 ! cleithrum @@ -267400,6 +269773,7 @@ relationship: part_of UBERON:0004741 ! cleithrum id: UBERON:4200034 name: cnemial crest def: "Longitudnal bony ridge on tibia, attachment site of the major extensor muscle of the hind limb." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000979 ! tibia @@ -267408,6 +269782,7 @@ relationship: part_of UBERON:0000979 ! tibia id: UBERON:4200036 name: internal trochanter def: "A boney projection on the internal diaphysis of the femur anterior or medial to the intertrochanteric fossa, below the femoral head. Muscle attachment site for ventral muscle mass notably the puboischiofemoralis externus. Modified from Romer 1956." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -267416,6 +269791,7 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200037 name: supinator process def: "A bony process that corresponds to the attachment site for the forelimb supinator muscles in tetrapods, distal to the deltopectoral crest and anterior to the radial condyle." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -267424,6 +269800,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200038 name: subscapular fossa def: "A marked depression on the medial side of the scapula blade, often opposite the glenoid region." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -267433,6 +269810,7 @@ id: UBERON:4200039 name: supraacetabular buttress def: "A bony protuberance dorsal to the acetabulum on the ilium, confluent with the supraacetabular crest (when present). Acts as a bone brace to prevent excessive femoral abduction and the origin site for part of the M. iliofemoralis." [PHENOSCAPE] synonym: "acetabular buttress" BROAD [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267441,6 +269819,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200040 name: acrocoracoid process def: "Anatomical process located in the proximal region of the coracoid in avian theropods, that is hook-shaped." [PHENOSCAPE:NI] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0004743 ! coracoid bone @@ -267457,6 +269836,7 @@ relationship: part_of UBERON:0002398 ! manus id: UBERON:4200042 name: brevis shelf def: "Anatomical projection on the ilium, anchoring caudal muscles." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267465,6 +269845,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200043 name: brevis fossa def: "Fossa located on the brevis shelf." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267474,6 +269855,7 @@ relationship: part_of UBERON:4200042 ! brevis shelf id: UBERON:4200044 name: articular surface for the calcaneum on the astragalus def: "Contact surface between the calcaneum and the astragalus located on the astragalus." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -267483,6 +269865,7 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200045 name: articular surface for the astragalus on the calcaneum def: "Contact surface between the calcaneum and the astragalus located on the calcaneum." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -267492,6 +269875,7 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200046 name: astragalo-calcaneal canal def: "The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011)." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004705 ! fenestra intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:4200021 ! astragalus-calcaneum unit @@ -267513,6 +269897,7 @@ def: "Anatomical projection that is an expansion on the proximal region of the h comment: Origin of the aponeursis of humeral head of the M. biceps brachii. From Bamuel et al. 1993 synonym: "crista bicipitalis" EXACT [] synonym: "crista tuberculi majoris" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection relationship: part_of UBERON:0000976 ! humerus @@ -267535,6 +269920,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200051 name: cotyloid notch def: "A notch or opening in the ventral part of the acetabular rim." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006802 ! acetabular rim @@ -267543,6 +269929,7 @@ relationship: part_of UBERON:0006802 ! acetabular rim id: UBERON:4200052 name: crista tibiofibularis def: "Tuberosity on the posterior surface of the lateral femoral condyle." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -267583,6 +269970,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200060 name: ectepicondylar foramen def: "Formen present on the ectepicondyle of the humerus." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus @@ -267606,6 +269994,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200063 name: ectocondylar tubercle def: "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -267676,6 +270065,7 @@ id: UBERON:4200079 name: dorsal iliac process def: "Posteriordorsal process of the ilium." [PHENOSCAPE] comment: It spresences gives the ilium a 'double headed' appearence. +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267684,6 +270074,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200080 name: fibular crest def: "A bony projection on the lateral side of the tibia, allowing contact between the later and the fibula." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001446 ! fibula @@ -267692,7 +270083,9 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:4200081 name: hypocleideum def: "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007841 ! furcula @@ -267724,6 +270117,7 @@ id: UBERON:4200086 name: iliac neck def: "A constricted region of the ilium which is dorsal to the acetabulular region. Prior to the expansion of the iliac blade." [PHENOSCAPE] synonym: "neck of ilium" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267732,6 +270126,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200087 name: iliac peduncle def: "Bony projection that is part of the dorsal surface of the ischim, where it articulates with the ilium." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium @@ -267740,6 +270135,7 @@ relationship: part_of UBERON:0001274 ! ischium id: UBERON:4200088 name: iliac peduncle of the pubis def: "Bony projection that is part of the dorsal surface of the pubis where it meets the ilium." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -267748,6 +270144,7 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200089 name: fibular facet of the calcaneum def: "Articular surface on calcaneum for the fibula." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -267757,6 +270154,7 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:4200090 name: fibular facet of the astragalus def: "Articular surface on the astragalus for the fibula." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -267777,6 +270175,7 @@ relationship: part_of UBERON:0001679 ! ethmoid bone id: UBERON:4200092 name: flexor tubercle of ungual def: "Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013703 ! integumentary projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:3010209 ! keratinous claw @@ -267800,6 +270199,7 @@ relationship: part_of UBERON:0012140 ! digitopodium region id: UBERON:4200095 name: infraspinous process def: "Process on infraspinous (region below the spine) of scapula." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -267832,6 +270232,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200098 name: ischial foot def: "Expansion of the distal region of the ischium." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium @@ -267847,6 +270248,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200100 name: latissimus dorsi process def: "A bony process on the dorsal side of the proximal region of the humerus which corresponds to the insertion site of the Latissimus dorsi muscle." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -267879,6 +270281,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200104 name: metacarpal extensor pit def: "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0002374 ! metacarpal bone @@ -267904,6 +270307,7 @@ id: UBERON:4200107 name: obturator process of ischium def: "Process located on the ventral shaft of the ischium that denotes the attachment site of the pubio-ischio-femoralis externus." [PHENOSCAPE] comment: In birds the pubio-ischio-femoralis externus is sometimes called the M.oburatorius lateralis and medialis. +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001274 ! ischium @@ -267944,6 +270348,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200112 name: prepectoral space def: "A triangular, anteroventrally facing area developed between the preaxial margin of the humerus and the proximal limb of the ventral humeral ridge. Based on Callier et al. 2009 ." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -267958,6 +270363,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200114 name: prepubic process def: "Elongate process forming the anteriormost part of the pubis." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -267982,6 +270388,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200117 name: pubic boot def: "Anteroposterior expansion of the distal region of the pubis." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001275 ! pubis @@ -267990,6 +270397,7 @@ relationship: part_of UBERON:0001275 ! pubis id: UBERON:4200118 name: pubic peduncle def: "Bony projection on the anterior portion of the ilium, anterior to the acetabulum that articulates with the pubis." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004530 ! bony projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -267998,6 +270406,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200119 name: pubis-ischium contact def: "Contact zone between the pubis and the ischium." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone @@ -268006,6 +270415,7 @@ relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone id: UBERON:4200120 name: puboischiadic plate def: "A broad expnase of bone incorperating both the pubis and the ischium. Origin site for ventral limb muscle including the pubioishciofemoralis externus. Modified from Romer 1956 ." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone @@ -268038,6 +270448,7 @@ relationship: part_of RO:0002577 ! system id: UBERON:4200123 name: scapular process def: "The dorsal extension of the scapulocoracoid above the level of the glenoid region in basal gnathostomes. Modified from Brazeau 2009." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -268046,6 +270457,7 @@ relationship: part_of UBERON:0006849 ! scapula id: UBERON:4200124 name: sternal trabecula def: "Anatomical projections that are elongate processes in the mid and posterior regions of the sternum." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000975 ! sternum @@ -268054,6 +270466,7 @@ relationship: part_of UBERON:0000975 ! sternum id: UBERON:4200125 name: supraacetabular crest def: "Anatomical projection (crest) located dorsaly to the acetabulum." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -268062,6 +270475,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200126 name: supraacetabular rim def: "Bony rim that is part of the supraacetabular region." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -268070,6 +270484,7 @@ relationship: part_of UBERON:0001273 ! ilium id: UBERON:4200127 name: suprascapula foramen def: "The route through which structures pass between the base of the neck and the posterior scapular region. It is formed by the suprascapular notch of the scapula and the superior transverse scapular ligament. From http://medical-dictionary.thefreedictionary.com/suprascapular+foramen." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005744 ! bone foramen property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0006849 ! scapula @@ -268099,6 +270514,7 @@ relationship: part_of UBERON:0000974 ! neck id: UBERON:4200130 name: tibial facet of astragalus def: "Facet for the articulation of the tibia on the astragalus (talus)." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -268109,6 +270525,7 @@ id: UBERON:4200131 name: trochanteric shelf def: "Anatomical projection on the anterolateral region of the proximal end of the femur." [PHENOSCAPE] comment: In Archosaurs was originally a possible insertion site for the m. iliofemoralis externus (Hutchinson 2001). In more derived dinosaurs this becomes a distinct process possibly providing the attachment surface for mm. iliotrochanteri in addition to m. iliofemoralis externus (Carrano and Hutchinson 2002) +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000981 ! femur @@ -268140,6 +270557,7 @@ id: UBERON:4200135 name: puboischiadic bar def: "A transverse flattened or cylindrical plate in the posterior body wall opposite the anterior ends of the pelvic fins, in front of the vent and at the posterior end of the body cavity, that supports a few anterior pelvic radials and a basal cartilage, the basipterygium. from Leonard J. V. Compagno. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2." [PHENOSCAPE] comment: Potentially homologous to the pelvic girdle. +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 @@ -268158,6 +270576,7 @@ id: UBERON:4200139 name: palatoquadrate element def: "Endochondral element that is part of the suspensorium sometimes ossifying distally as the quadrate bone and linking the basal section of the braincase to the lower jaw." [PHENOSCAPE] comment: The palatoquadrate cartilage is the primary element of the suspensorium in larval amphibians and can ossify distally in some taxa, becoming the quadrate bone. In mammals the quadrate bone becomes the incus. +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0002-1810-9886 relationship: part_of UBERON:0003108 ! suspensorium @@ -268181,6 +270600,7 @@ relationship: part_of UBERON:3000922 ! prehallux skeleton id: UBERON:4200150 name: accessory foramen def: "Foramen found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen 'c' and 'd' after Jarvik 1996." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -268258,6 +270678,7 @@ relationship: part_of UBERON:0000983 ! metatarsus region id: UBERON:4200159 name: ventral ridge system def: "A collection of attached ridges on the ventrl surface of the femur consisting of the internal and fourth trochanters plus the adductor blade and crest. Most notible in early amniotes (based on Romer 1956)." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone relationship: part_of UBERON:0000981 ! femur @@ -268289,6 +270710,7 @@ relationship: part_of UBERON:0002534 ! paired fin id: UBERON:4200166 name: hindlimb interepipodial space def: "The space between the bones of the tibia and the fibula." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space relationship: adjacent_to UBERON:0000979 ! tibia relationship: adjacent_to UBERON:0001446 ! fibula @@ -268297,6 +270719,7 @@ relationship: part_of UBERON:0010720 ! hindlimb zeugopod skeleton [Term] id: UBERON:4200167 name: mesial pelvic ridge +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0004529 ! anatomical projection relationship: part_of UBERON:0002355 ! pelvic region of trunk relationship: part_of UBERON:0007832 ! pelvic girdle skeleton @@ -268311,6 +270734,7 @@ id: UBERON:4200169 name: process 2 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and associated with subscapularis muscle (based on Coates 1996)." [PHENOSCAPE] synonym: "process 2" BROAD [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268318,6 +270742,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200170 name: process 3 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 4 of entepicondyle (see Coates 1996)." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268325,6 +270750,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200171 name: process 4 of entepicondyle def: "Process on the humerus of basal tetrapods, anterior to the entepicondyle and adjacent to process 3 of entepicondyle (see Coates 1996)." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268337,6 +270763,7 @@ synonym: "collum anatomicum humeri" EXACT LATIN [FMA:23356, FMA:TA] synonym: "humeral neck" EXACT [] xref: FMA:23356 xref: NCIT:C33164 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0018664 ! neck of bone element intersection_of: UBERON:0001560 ! neck of organ @@ -268347,6 +270774,7 @@ relationship: part_of UBERON:0004411 ! proximal epiphysis of humerus [Term] id: UBERON:4200173 name: dorsal ridge +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268369,11 +270797,13 @@ id: UBERON:4200176 name: ascending process of clavicle def: "A bony dorsal extension of the clavicle." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0001105 ! clavicle bone [Term] id: UBERON:4200177 name: supracondyle tubercle +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268401,12 +270831,14 @@ id: UBERON:4200181 name: astragalus head def: "The region of the astragalus/ talus that carries the articular surface for the navicular." [PHENOSCAPE] synonym: "talus head" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0002395 ! talus [Term] id: UBERON:4200182 name: lateral tubercle of astragalus +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002395 ! talus @@ -268415,6 +270847,7 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:4200183 name: bicipital tuberosity def: "The rough eminence which is on the anterior inner aspect of the neck of the radius and into which the tendon of the biceps is inserted. From http://www.merriam-webster.com/medical." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001423 ! radius bone @@ -268423,6 +270856,7 @@ relationship: part_of UBERON:0001423 ! radius bone id: UBERON:4200184 name: ulnar tuberosity def: "His roughened area of bone sits distomedially at the base of the coronoid process. It is the attachment site for the brachialis muscle. From http://www.anatomyexpert.com/." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001424 ! ulna @@ -268431,6 +270865,7 @@ relationship: part_of UBERON:0001424 ! ulna id: UBERON:4200185 name: entepicondyle fossa def: "A fossa on the distal humerus proximal to the entepicondyle." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: adjacent_to UBERON:0006806 ! entepicondyle of humerus relationship: part_of UBERON:0000976 ! humerus @@ -268438,6 +270873,7 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200186 name: distal keel of metacarpal III +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0003647 ! metacarpal bone of digit 3 @@ -268491,6 +270927,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200193 name: posterodorsal process of ilium def: "Anatomical project part of the blade of the ilium that projects posteriorly." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001273 ! ilium @@ -268520,6 +270957,7 @@ property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 id: UBERON:4200197 name: anterior humeral ridge def: "Ridge or keel at the proximal end of the humerus. (see Laurin 1998)." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0000976 ! humerus @@ -268528,6 +270966,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200198 name: incisor process def: "Process that is part of the mandible that is in close proximity to the incisor teeth." [PHENOSCAPE] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0001-7972-3866 relationship: part_of UBERON:0001684 ! mandible @@ -268545,6 +270984,7 @@ relationship: part_of UBERON:0002105 ! vestibulo-auditory system id: UBERON:4200203 name: humeral facet on the ulna def: "Facet on the ulna for articulation with the ulnar condyle of the humerus." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001424 ! ulna @@ -268554,6 +270994,7 @@ id: UBERON:4200204 name: humeral facet on radius def: "Facet on the radius for articulation with the radial condyle of the humerus." [PHENOSCAPE] synonym: "proximal articular surface of radius" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0001423 ! radius bone @@ -268585,6 +271026,7 @@ is_a: UBERON:2101586 ! pectoral fin radial element id: UBERON:4200209 name: postaxial process of the ulnare def: "A projection on the postaxial region of the ulnare." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0002445 ! ulnare @@ -268592,6 +271034,7 @@ relationship: part_of UBERON:0002445 ! ulnare id: UBERON:4200210 name: postaxial process of the femur def: "A projection on the postaxial region of the femur." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000981 ! femur @@ -268599,6 +271042,7 @@ relationship: part_of UBERON:0000981 ! femur id: UBERON:4200211 name: postaxial process of the fibula def: "A projection on the postaxial region of the fibula." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001446 ! fibula @@ -268606,6 +271050,7 @@ relationship: part_of UBERON:0001446 ! fibula id: UBERON:4200212 name: pectoral process of humerus synonym: "pectoral process" RELATED [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268613,6 +271058,7 @@ relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200213 name: deltoid process +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0000976 ! humerus @@ -268621,6 +271067,7 @@ relationship: part_of UBERON:0000976 ! humerus id: UBERON:4200214 name: epipodial facet def: "Facets for the articulation of the epipodial (zeugopodial) elements." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4300038 ! facet relationship: part_of UBERON:0011583 ! stylopodial skeleton @@ -268675,6 +271122,7 @@ is_a: UBERON:0006800 ! anatomical line id: UBERON:4200222 name: distal groove of humerus def: "Groove along the distal margin of the humerus, ventral to the radial and ulnar condyle." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0000976 ! humerus @@ -268689,6 +271137,7 @@ relationship: part_of UBERON:0004753 ! scapulocoracoid id: UBERON:4200224 name: columnar area def: "Modified from Garvey et al. 2005. ' Between the dorsal ridge and the caput humeri is a futher recessed area......that clearly separates the two structures and is slightly separted from the dorsal surface of the entepicondyle, and more specifically from the unfinished bone of the entepicondyle, by a narrow ridge.'." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:0000976 ! humerus @@ -268704,7 +271153,9 @@ relationship: has_muscle_origin UBERON:0004753 ! scapulocoracoid id: UBERON:4200226 name: anteroventral process of cleithrum def: "A ramus of the celithrum that descend along the girdle. Its rounded outer surface forms the articulation surface for the clavicle while its anterior surface overlaps with the anterior process of the scapulocoracoid." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -268715,12 +271166,14 @@ is_obsolete: true [Term] id: UBERON:4200228 name: excurrent foramen of ectepicondylar foramen +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen [Term] id: UBERON:4200229 name: incurrent foramen of ectepicondylar foramen +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005744 ! bone foramen relationship: part_of UBERON:4200060 ! ectepicondylar foramen @@ -268751,6 +271204,7 @@ id: UBERON:4200233 name: dorsal clavicular process def: "A process, extending dorsally from the clavicular plate, that attaches to the cleithrum. Modified from Clack 2012 and Coates 1996." [PHENOSCAPE] synonym: "ascending dorsal clavicular process" EXACT [] +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:0001105 ! clavicle bone @@ -268844,6 +271298,7 @@ relationship: develops_from UBERON:0003107 ! Meckel's cartilage [Term] id: UBERON:4200251 name: meckelian foramen +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:4200250 ! meckelian bone @@ -268859,6 +271314,7 @@ id: UBERON:4300002 name: palatine prong def: "A process on the palatine that projects outward and upward and articulates with a depression (maxillary saddle) in the proximal end of the maxilla [Gosline WA et al, 1966; Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001682 ! palatine bone @@ -268901,6 +271357,7 @@ relationship: has_part UBERON:0002542 ! scale id: UBERON:4300007 name: medial pelvic process def: "Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf]." [http://hdl.handle.net/10088/11710] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2000623 ! basipterygium bone @@ -268930,6 +271387,7 @@ is_a: UBERON:0000026 ! appendage id: UBERON:4300013 name: paired fin radial skeleton synonym: "paired fin radial series" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4440008 ! fin radial skeleton intersection_of: UBERON:4440008 ! fin radial skeleton intersection_of: part_of UBERON:0002534 ! paired fin @@ -269134,6 +271592,7 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300035 name: supraneural element def: "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0002090 ! postcranial axial skeleton @@ -269300,7 +271759,9 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300106 name: ventral limb of posttemporal def: "Zone of bone organ that is the ventral extension of the posttemporal." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2000549 ! posttemporal @@ -269309,7 +271770,9 @@ id: UBERON:4300108 name: lepidotrichial segment def: "Zone of bone organ that is part of a lepidotrich and connected to other segments by collagen fibers. These segments lend flexibility to the lepidtrich." [https://doi.org/10.1002/jmor.20161] synonym: "segment of fin ray" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000172 ! lepidotrichium @@ -269432,6 +271895,7 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300125 name: dorsal iliac ridge def: "Ridge that is part of the ilium." [PHENOSCAPE:AD, WD] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001273 ! ilium @@ -269441,6 +271905,7 @@ id: UBERON:4300126 name: tectorial restraint system def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates) [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]." [PHENOSCAPE] is_a: UBERON:0000467 ! anatomical system +is_a: UBERON:0004121 ! ectoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001846 ! internal ear @@ -269515,6 +271980,7 @@ relationship: part_of RO:0002577 ! system id: UBERON:4300137 name: lingual region def: "The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue." [PHENOSCAPE:WD] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -269523,6 +271989,7 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300138 name: labial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -269531,6 +271998,7 @@ relationship: part_of UBERON:0000165 ! mouth id: UBERON:4300139 name: posterolingual region def: "The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips." [PHENOSCAPE:WD] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0000165 ! mouth @@ -269587,6 +272055,7 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300151 name: pelvic intercleithral cartilage def: "Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983)." [http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005179 ! pelvic region element is_a: UBERON:0007844 ! cartilage element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 @@ -269610,7 +272079,9 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300154 name: procurrent spur def: "A ventrally projecting spur on the posteriormost ventral procurrent caudal ray overlapping ventrally the preceding ray in various percomorphs (Johnson, 1975)." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001830 ! caudal fin ventral procurrent ray @@ -269642,6 +272113,7 @@ relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:4300158 name: ectepicondylar depression +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004704 ! bone fossa property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0006807 ! ectepicondyle of humerus @@ -269830,6 +272302,7 @@ id: UBERON:4300196 name: processus descendens of sphenoid synonym: "otico-sphenoid bridge" EXACT [] is_a: UBERON:0004530 ! bony projection +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:0001677 ! sphenoid bone [Term] @@ -269838,6 +272311,7 @@ name: Westoll line def: "More or less concentric lines of discontinuity in the cosmine of Dipnoi, probably due to cyclic resorption and redeposition during growth occurring on the bases of individual scales and also as large structures between headshield plates.[Fishbase]." [https://www.fishbase.de/glossary/Glossary.php?q=Westoll+lines] synonym: "Westoll lines" EXACT PLURAL [] is_a: UBERON:0003102 ! surface structure +is_a: UBERON:0010313 ! neural crest-derived structure relationship: part_of UBERON:4000087 ! cosmine [Term] @@ -269866,6 +272340,7 @@ relationship: part_of UBERON:0010323 ! cranial skeletal system id: UBERON:4300201 name: subepiotic fossa def: "Fossa for epaxial musculature inserting on the braincase. Forey et al. 1996." [ISBN:978-0-12-670950-6] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0008789 ! cranial fossa relationship: part_of UBERON:0001703 ! neurocranium @@ -269874,6 +272349,7 @@ id: UBERON:4300202 name: endoskeletal cranial joint def: "The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997)." [ISBN:978-0-412-78480-4] synonym: "endoskeletal intracranial joint" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000982 ! skeletal joint property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium @@ -269882,6 +272358,7 @@ relationship: part_of UBERON:0001703 ! neurocranium id: UBERON:4300203 name: tectum orbitale def: "The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993)." [ISBN:9780226315706] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0001703 ! neurocranium @@ -270235,6 +272712,7 @@ id: UBERON:4300249 name: lateral occipital foramen def: "Foramen that has the exoccipital as the anterior and dorsal rim. The occipital forms the anterior rim during early development. [database_cross_reference: GOC:cvs][database_cross_reference: https://orcid.org/0000-0002-2244-7917][database_cross_reference: ZFIN:ZDB-PUB-961014-192]." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005892 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0013685 ! foramen of skull relationship: part_of UBERON:0001693 ! exoccipital bone @@ -270252,6 +272730,7 @@ is_a: UBERON:2001830 ! caudal fin ventral procurrent ray id: UBERON:4300252 name: ethmo-palatine cartilage def: "The ethmo-palatine cartilage (EPC) is a distinct body situated between the posterior surface of the upper arm of the premaxilla and the anterior margin of the palatine. There is usually only a single cartilage mass lying between these bones, although that cartilage is apparently subdivided into two units in some taxa (e.g., the Old World characiform family Citharinidae, Vari, 1979:294). Vari 1989a." [https://doi.org/10.5479/si.00810282.471] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0011004 ! pharyngeal arch cartilage is_a: UBERON:0013765 ! digestive system element relationship: part_of UBERON:0011085 ! palatoquadrate arch @@ -270260,6 +272739,7 @@ relationship: part_of UBERON:0011085 ! palatoquadrate arch id: UBERON:4300261 name: pectoral fin hook def: "Process that is part of the pectoral fin lepidotrichium." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4300284 ! fin hook property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium @@ -270268,6 +272748,7 @@ relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium id: UBERON:4300262 name: pelvic fin hook def: "Process that is part of the pelvic fin lepidotrichium." [PHENOSCAPE] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:4300284 ! fin hook property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium @@ -270331,6 +272812,7 @@ id: UBERON:4300269 name: epioccipital bridge def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001] synonym: "epiotic bridge" EXACT [] +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:2001412 ! epiotic @@ -270373,6 +272855,7 @@ relationship: part_of UBERON:4500004 ! adipose fin skeleton id: UBERON:4300275 name: suborbital stay def: "A backwards extension of the third circumorbital bone (part of the lateral head/cheek skeleton, below the eye socket) across the cheek to the preoperculum, to which it is connected in most species [wikipedia]." [https://en.wikipedia.org/wiki/Scorpaeniformes] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection relationship: part_of UBERON:2001408 ! infraorbital 3 @@ -270416,6 +272899,8 @@ is_a: UBERON:2002127 ! myorhabdoid bone id: UBERON:4300284 name: fin hook def: "Anatomical projection that is part of a fin." [PHENOSCAPE] +is_a: UBERON:0004121 ! ectoderm-derived structure +is_a: UBERON:0010314 ! structure with developmental contribution from neural crest is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:4000172 ! lepidotrichium @@ -270432,6 +272917,7 @@ property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 id: UBERON:4300286 name: second preethmoid element def: "Endochondral skeletal element found between the preethmoid and maxilla." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010363 ! endochondral element property_value: dc-contributor https://orcid.org/0000-0003-3162-7490 relationship: part_of UBERON:0003112 ! olfactory region @@ -270554,6 +273040,7 @@ property_value: dc-contributor https://orcid.org/0000-0002-5378-0931 id: UBERON:4500004 name: adipose fin skeleton def: "Median fin skeleton supporting the adipose fin." [PHENOSCAPE] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4000170 ! median fin skeleton intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:2000251 ! adipose fin @@ -270627,6 +273114,7 @@ id: UBERON:4500012 name: hypobranchial series def: "Anatomical cluster that consists of the hypobranchial elements within an individual." [PHENOSCAPE] is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001893 ! hypobranchial element @@ -270639,6 +273127,7 @@ id: UBERON:4500013 name: pharyngobranchial series def: "Anatomical cluster that consists of the pharyngobranchial elements within an individual." [PHENOSCAPE] is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001909 ! pharyngobranchial element @@ -270651,6 +273140,7 @@ id: UBERON:4500014 name: basibranchial series def: "Anatomical cluster that consists of the basibranchial elements within an individual." [PHENOSCAPE] is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:0013746 ! basibranchial element @@ -270664,6 +273154,7 @@ name: premaxilla articular process def: "Pharyngeal arch bone immediately posterior to the ascending process, the medial surface of which articulates with the anterior end of the maxillary." [PHENOSCAPE] comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes) synonym: "articular process of the premaxilla" EXACT [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0002244 ! premaxilla @@ -270683,6 +273174,7 @@ id: UBERON:4500018 name: premaxilla maxillary process def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." [PHENOSCAPE] synonym: "postmaxillary process" EXACT [] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:4100000 ! skeletal element projection property_value: dc-contributor https://orcid.org/0000-0002-5378-0931 relationship: part_of UBERON:0002244 ! premaxilla @@ -271175,6 +273667,7 @@ def: "A subdivision of the skeleton of the autopod consisting of the phalanges o synonym: "digit" RELATED COMPARATIVE_PREFERRED [http://orcid.org/0000-0002-6601-2165] synonym: "digit skeleton" RELATED [http://orcid.org/0000-0002-6601-2165] is_a: CARO:0000003 +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0010712 ! limb skeleton subdivision intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:5002544 ! digit plus metapodial segment @@ -271712,6 +274205,7 @@ relationship: part_of UBERON:0000922 ! embryo id: UBERON:6000097 name: insect cephalic furrow xref: FBbt:00000097 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:6007424 ! insect epithelial furrow relationship: part_of UBERON:0004734 ! gastrula @@ -271744,6 +274238,7 @@ id: UBERON:6000119 name: insect anterior ectoderm def: "The region of the ectoderm anterior to the cephalic furrow." [FBC:DOS] xref: FBbt:00000119 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0010000 ! multicellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -271764,6 +274259,7 @@ relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/u id: UBERON:6000130 name: insect visceral mesoderm xref: FBbt:00000130 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda relationship: part_of UBERON:6000128 ! insect trunk mesoderm @@ -272007,6 +274503,7 @@ relationship: part_of UBERON:6001055 ! insect presumptive embryonic/larval nervo [Term] id: UBERON:6001057 name: insect neurogenic region +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -272208,7 +274705,6 @@ id: UBERON:6001729 name: insect larval segment def: "Any segment that is part of some larva." [FBC:auto_generated_definition] xref: FBbt:00001729 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000914 ! organismal segment intersection_of: UBERON:0000914 ! organismal segment intersection_of: only_in_taxon NCBITaxon:50557 ! Insecta @@ -272423,6 +274919,7 @@ name: insect embryonic/larval imaginal precursor def: "Imaginal precursor that is part of the embryo/larva." [FBC:SPR] synonym: "larval imaginal precursor" EXACT [] xref: FBbt:00001760 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6005023 ! insect imaginal precursor relationship: part_of UBERON:0002548 ! larva relationship: part_of UBERON:0003142 ! prepupa @@ -272464,6 +274961,7 @@ name: insect antennal disc def: "Posterior portion of the eye-antennal disc. It gives rise to the adult antennal segments and the maxillary palp, as well as contributing to the head capsule." [FlyBase:FBrf0064789] xref: FBbt:00001767 is_a: UBERON:0000939 ! imaginal disc +is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:6001735 ! insect larval antennal segment relationship: part_of UBERON:6001766 ! insect eye-antennal disc @@ -272554,7 +275052,6 @@ id: UBERON:6001789 name: insect histoblast def: "A progenitor of the adult external abdomen." [FBC:DOS, FBC:gg] xref: FBbt:00001789 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:6001760 ! insect embryonic/larval imaginal precursor relationship: develops_from UBERON:6016022 ! insect abdominal histoblast primordium @@ -272680,6 +275177,7 @@ name: insect embryonic/larval ocular segment sensillum def: "Any embryonic/larval sense organ (UBERON:6002639) that is part of some larval ocular segment (UBERON:6001731)." [FBC:auto_generated_definition] synonym: "larval ocular segment sensillum" EXACT [] xref: FBbt:00002642 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6007280 ! insect embryonic/larval head sense organ intersection_of: UBERON:6002639 ! insect larval sense organ intersection_of: part_of UBERON:6001731 ! insect larval ocular segment @@ -272896,7 +275394,6 @@ def: "The pre-oral neuropils of the brain located above and some of it below the synonym: "SPG" RELATED [] xref: FBbt:00003626 is_a: UBERON:0003339 ! ganglion of central nervous system -is_a: UBERON:0004121 ! ectoderm-derived structure relationship: develops_from UBERON:6001920 ! insect embryonic/larval brain relationship: part_of UBERON:0000955 ! brain @@ -272906,6 +275403,7 @@ name: insect protocerebrum def: "The most anterior of the segmental subdivisions of the insect CNS; thought to represent the first pre-oral segment of the brain. The protocerebrum comprises many discrete neuropil regions including the central body complex and mushroom bodies." [http://flybrain.neurobio.arizona.edu/Flybrain/html/terms/terms.html] synonym: "protocerebral neuromere" EXACT [FlyBase:FBrf0092819] xref: FBbt:00003627 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0004732 ! segmental subdivision of nervous system relationship: part_of UBERON:6000008 ! labral segment relationship: part_of UBERON:6003626 ! insect supraesophageal ganglion @@ -272919,7 +275417,6 @@ synonym: "central body" RELATED [] synonym: "central body complex" RELATED [] synonym: "CX" EXACT BRAIN_NAME_ABV [FlyBase:FBrf0224194] xref: FBbt:00003632 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6041000 ! insect synaptic neuropil block relationship: develops_from UBERON:6007070 ! insect centro-posterior medial synaptic neuropil domain relationship: part_of UBERON:6007145 ! insect adult protocerebrum @@ -273000,7 +275497,7 @@ name: insect arista def: "Highly specialised, slender sixth segment of the antenna covered in bristle-like outgrowths known as laterals. It extends laterally from the dorsal region of the third segment of the antenna." [FlyBase:FBrf0007734, FlyBase:FBrf0031004, FlyBase:FBrf0137012] synonym: "segment 6" EXACT [] xref: FBbt:00004519 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6007149 ! segment of antenna relationship: develops_from UBERON:6110811 ! insect presumptive arista relationship: part_of UBERON:0000972 ! antenna @@ -273080,7 +275577,7 @@ synonym: "alinotum" EXACT [FlyBase:FBrf0111704] synonym: "mesonotum" EXACT [FlyBase:FBrf0166419] synonym: "notum" BROAD [] xref: FBbt:00004580 -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004552 ! insect tergum relationship: develops_from UBERON:6006032 ! insect mesothoracic tergum primordium relationship: part_of UBERON:6004579 ! insect dorsal mesothorax @@ -273125,6 +275622,7 @@ id: UBERON:6004668 name: insect prothoracic tarsal segment def: "Tarsal segment of the adult prothoracic leg." [FBC:MMC] xref: FBbt:00004668 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:6004646 ! insect tarsal segment intersection_of: UBERON:6004646 ! insect tarsal segment intersection_of: part_of UBERON:6004663 ! insect prothoracic leg @@ -273139,7 +275637,6 @@ synonym: "prothoracic tarsal segment 1" EXACT [] synonym: "T1 tarsal segment 1" EXACT [] synonym: "T1 Ts1" EXACT [FlyBase:FBrf0219028] xref: FBbt:00004670 -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6004648 ! insect metatarsus is_a: UBERON:6004668 ! insect prothoracic tarsal segment intersection_of: UBERON:6004648 ! insect metatarsus @@ -273265,6 +275762,7 @@ def: "A group of small, interconnected ganglia situated posterior to and between synonym: "stomodaeal nervous system" RELATED [FlyBase:FBrf0111704] synonym: "stomodeal nervous system" RELATED [FlyBase:FBrf0111704] xref: FBbt:00005096 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0011216 ! organ system subdivision relationship: only_in_taxon NCBITaxon:6656 ! Arthropoda relationship: part_of UBERON:0001017 ! central nervous system @@ -273292,6 +275790,7 @@ name: insect wing margin def: "The border or edge of the wing. It separates the dorsal and ventral compartments." [FBC:gg] synonym: "margin" BROAD [] xref: FBbt:00005378 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:6007284 ! insect region of integument relationship: part_of UBERON:0000984 ! imaginal disc-derived wing @@ -273350,6 +275849,7 @@ name: insect visual anlage synonym: "A VisSys" RELATED [FBC:DOS] synonym: "AVis" RELATED [] xref: FBbt:00005434 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage @@ -273372,6 +275872,7 @@ name: insect clypeo-labral anlage synonym: "A Cly" RELATED [FBC:DOS] synonym: "clypeo-labral specific anlage" RELATED [] xref: FBbt:00005439 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0005291 ! embryonic tissue is_a: UBERON:0007688 ! anlage @@ -273463,6 +275964,7 @@ name: insect ventral ectoderm synonym: "P2 VenEc" RELATED [FBC:DOS] synonym: "venEc" RELATED [] xref: FBbt:00005558 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:6007045 ! insect trunk ectoderm @@ -273536,6 +276038,7 @@ name: insect mesothoracic tergum primordium def: "Region of the dorsal mesothoracic disc that will develop into the mesothoracic tergum." [FBC:DOS, FlyBase:FBrf0027793] xref: FBbt:00006032 is_a: UBERON:0000485 ! simple columnar epithelium +is_a: UBERON:0010371 ! ecto-epithelium relationship: part_of UBERON:6001778 ! insect wing disc [Term] @@ -273551,6 +276054,7 @@ id: UBERON:6007045 name: insect trunk ectoderm def: "The region of the ectoderm posterior to the cephalic furrow." [FBC:DOS] xref: FBbt:00007045 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002050 ! embryonic structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000924 ! ectoderm @@ -273670,6 +276174,7 @@ id: UBERON:6007245 name: insect cuticular specialization xref: FBbt:00007245 is_a: UBERON:0000476 ! acellular anatomical structure +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0001001 ! chitin-based cuticle @@ -273678,6 +276183,7 @@ id: UBERON:6007248 name: insect chorionic specialization def: "Specialized structure of the chorion of the egg." [FBC:MMC] xref: FBbt:00007248 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000476 ! acellular anatomical structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000920 ! egg chorion @@ -273819,6 +276325,7 @@ name: insect synaptic neuropil def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194] xref: FBbt:00040005 is_a: UBERON:0000480 ! anatomical group +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: only_in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0002606 ! neuropil @@ -273839,6 +276346,7 @@ def: "A closely associated group of synaptic neuropil domains." [FBC:DOS, FBC:KI synonym: "level 1 neuropil" EXACT [FlyBase:FBrf0224194] xref: FBbt:00041000 is_a: UBERON:0000480 ! anatomical group +is_a: UBERON:0004121 ! ectoderm-derived structure relationship: part_of UBERON:6040005 ! insect synaptic neuropil [Term] @@ -273854,6 +276362,7 @@ id: UBERON:6100153 name: insect sensilla row def: "A row of sensilla." [FBC:DOS] xref: FBbt:00100153 +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034926 ! anatomical row relationship: composed_primarily_of UBERON:0002536 ! arthropod sensillum relationship: only_in_taxon NCBITaxon:50557 ! Insecta @@ -273877,6 +276386,7 @@ id: UBERON:6110746 name: insect presumptive prothoracic metatarsus def: "Region of the prothoracic leg disc that will develop into the prothoracic metatarsus." [FlyBase:FBrf0219028] xref: FBbt:00110746 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001781 ! insect prothoracic leg disc @@ -273885,6 +276395,7 @@ id: UBERON:6110811 name: insect presumptive arista def: "Region of the antennal disc that will develop into the arista." [FlyBase:FBrf0031004] xref: FBbt:00110811 +is_a: UBERON:0004121 ! ectoderm-derived structure is_a: UBERON:0007688 ! anlage relationship: part_of UBERON:6001767 ! insect antennal disc @@ -273892,6 +276403,7 @@ relationship: part_of UBERON:6001767 ! insect antennal disc id: UBERON:7500033 name: distal-most point of medial condyle of femur def: "The distal-most point of the medial condyle of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: distalmost_part_of UBERON:0009984 ! medial condyle of femur @@ -273903,6 +276415,7 @@ relationship: part_of UBERON:0009984 ! medial condyle of femur id: UBERON:7500034 name: distal-most point of trochlea of humerus def: "The distal-most point of the trochlea of a humerus." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: distalmost_part_of UBERON:0000144 ! trochlea of humerus @@ -273949,6 +276462,7 @@ consider: FOVT:0000003 id: UBERON:7500039 name: posterior of pes def: "The posterior-most point of a foot." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: in_posterior_side_of UBERON:0002387 ! pes @@ -274011,6 +276525,7 @@ consider: FOVT:0000006 id: UBERON:7500046 name: proximal-most point of head of femur def: "The proximal-most point of the head of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006767 ! head of femur @@ -274022,6 +276537,7 @@ relationship: proximalmost_part_of UBERON:0006767 ! head of femur id: UBERON:7500047 name: proximal-most point of head of humerus def: "The proximal-most point of the head of a humerus." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006801 ! proximal head of humerus @@ -274033,6 +276549,7 @@ relationship: proximalmost_part_of UBERON:0006801 ! proximal head of humerus id: UBERON:7500048 name: proximal-most point of ventral tubercle of humerus def: "The proximal-most point of the ventral tubercle of a humerus." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus @@ -274044,6 +276561,7 @@ relationship: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus id: UBERON:7500049 name: proximal-most point of greater trochanter of femur def: "The proximal-most point of the greater trochanter of a femur." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0006983 ! anatomical point intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0002503 ! greater trochanter @@ -274158,6 +276676,7 @@ consider: FOVT:0000009 id: UBERON:7500061 name: trochlear ridge of humerus def: "The ridge of the trochlea on a humerus lies in the middle of the distal end of a humerus on the lateral side of the trochlea and the medial side of the capitulum (capitellum)." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0000144 ! trochlea of humerus @@ -274167,6 +276686,7 @@ id: UBERON:7500062 name: tibial tuberosity def: "The tibial tuberosity is on the anterior side of a tibia and is where a patella ligament attaches." [https://en.wikipedia.org/wiki/Tuberosity_of_the_tibia] synonym: "fossa digitalis" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection intersection_of: UBERON:0005813 ! tubercle @@ -274189,6 +276709,7 @@ id: UBERON:7500064 name: trochlear groove of talus def: "The furrow between the lateral and medial condyles of the trochlea of talus." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "trochlear groove of astragalus" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus @@ -274198,6 +276719,7 @@ id: UBERON:7500065 name: condyle of talus def: "An articular prominence of a talus that engages with the tibia." [http://orcid.org/0000-0003-2699-3066] synonym: "condyle of astragalus" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0002395 ! talus @@ -274227,6 +276749,7 @@ id: UBERON:7500068 name: ridge of medial condyle of talus def: "The crest of the medial condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of medial condyle of astragalus" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500066 ! medial condyle of talus @@ -274236,6 +276759,7 @@ id: UBERON:7500069 name: ridge of lateral condyle of talus def: "The crest of the lateral condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of lateral condyle of astragalus" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:7500067 ! lateral condyle of talus @@ -274245,6 +276769,7 @@ id: UBERON:7500070 name: sulcus tali def: "A depression that runs between the two facets of a talus that interact with a calcaneum." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "sulcus for flexor hallucis longus tendon" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000093 ! sulcus property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0002395 ! talus @@ -274306,6 +276831,7 @@ id: UBERON:7500077 name: trochlea of femur def: "A trochlea on the distal end of a femur that interacts with the patella." [https://www.imaios.com/en/e-Anatomy/Anatomical-Parts/patellar-surface] synonym: "patellar surface of femur" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone relationship: part_of UBERON:0004406 ! distal epiphysis of femur @@ -274315,6 +276841,7 @@ name: styloid process of radius def: "A condyle on the distal end and lateral side of a radius." [https://en.wikipedia.org/wiki/Radial_styloid_process] synonym: "radial condyle" EXACT [] synonym: "radial styloid process" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005055 ! zone of long bone is_a: UBERON:0009979 ! condyle intersection_of: UBERON:0009979 ! condyle @@ -274338,6 +276865,7 @@ id: UBERON:7500080 name: articular surface for carpals def: "The articular surface on the distal end of a radius that interacts with carpals." [https://orcid.org/0000-0003-2699-3066] synonym: "distal articular surface of radius" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -274347,6 +276875,7 @@ relationship: part_of UBERON:0004407 ! distal epiphysis of radius id: UBERON:7500081 name: articular surface for the tibia on the talus def: "Contact surface between the tibia and the talus located on the talus." [https://en.wikipedia.org/wiki/Talus_bone] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4100003 ! articular surface is_a: UBERON:4200230 ! surface of bone property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -274356,6 +276885,7 @@ relationship: part_of UBERON:0002395 ! talus id: UBERON:7500083 name: greater palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate, for the transmission of the descending palatine vessels and greater palatine nerve." [FMA:53173, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Greater_palatine_foramen&oldid=971687677] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone @@ -274364,6 +276894,7 @@ relationship: part_of UBERON:0001682 ! palatine bone id: UBERON:7500084 name: lesser palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate behind the greater palatine foramen. One or more lesser palatine foramina perforate the pyramidal process of the palatine bone and carry the lesser palatine nerve." [FMA:53167, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Lesser_palatine_foramina&oldid=870872639] +is_a: UBERON:0010313 ! neural crest-derived structure is_a: UBERON:0013685 ! foramen of skull property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001682 ! palatine bone @@ -274392,6 +276923,7 @@ id: UBERON:7500089 name: posterior articular facet for talus of calcaneus def: "Posterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "proximal facet of calcaneum" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -274401,6 +276933,7 @@ relationship: part_of UBERON:0001450 ! calcaneus id: UBERON:7500091 name: middle articular facet for talus of calcaneus def: "Middle facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -274411,6 +276944,7 @@ id: UBERON:7500092 name: anterior articular facet for talus of calcaneus def: "Anterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "distal facet of calcaneum" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:4200230 ! surface of bone is_a: UBERON:4300038 ! facet property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 @@ -274421,6 +276955,7 @@ id: UBERON:7500093 name: calcaneal body def: "The calcaneus body is the part of the bone not used for articulation with other bones." [https://orcid.org/0000-0003-2699-3066] synonym: "corpus calcanei" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005913 ! zone of bone organ property_value: dc-contributor https://orcid.org/0000-0003-2699-3066 relationship: part_of UBERON:0001450 ! calcaneus @@ -274431,6 +276966,7 @@ name: tubercle of calcaneus def: "A raised projection on the calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "calcaneal tubercle" EXACT [] synonym: "trochlear process of calcaneus" EXACT [] +is_a: UBERON:0004120 ! mesoderm-derived structure is_a: UBERON:0005813 ! tubercle is_a: UBERON:4100000 ! skeletal element projection intersection_of: UBERON:0005813 ! tubercle @@ -274497,6 +277033,7 @@ id: UBERON:8000004 name: central retina def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] is_a: UBERON:0000073 ! regional part of nervous system +is_a: UBERON:0004121 ! ectoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0000966 ! retina @@ -274537,6 +277074,7 @@ relationship: in_right_side_of UBERON:0000468 ! multicellular organism id: UBERON:8000008 name: cementocyte lacuna def: "The small cavity within the cellular cementum that is occupied by a cementocyte cell body." [http://www.ncbi.nlm.nih.gov/pubmed/27029548, MP:0030555] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002553 ! anatomical cavity property_value: dc-contributor https://orcid.org/0000-0001-5208-3432 relationship: part_of UBERON:0001753 ! cementum @@ -274723,6 +277261,7 @@ name: metabolic zone of liver def: "Any of the metabolic zones found in the liver. Liver tissue is heterogenous at the level of morphometry and histochemistry. This heterogeneity is linked to the position of a cell within the functional unit of the tissue, which, in turn, is related to the blood supply: cells located in the upstream zone differ from those in the downstream zone with respect to subcellular structures, key enzymes, translocators, and receptors and, therefore, have different metabolic capacities. This is the basis for 'metabolic zonation', a concept first proposed in mammals for carbohydrate metabolism and later expanded to include amino acid and ammonia metabolism, xenobiotic metabolism, protective metabolism, and formation of plasma proteins." [http://www.ncbi.nlm.nih.gov/pubmed/8839925, https://doi.org/10.1016/S0968-0004(78)91764-4] synonym: "hepatic acinus metabolic zone" EXACT [http://www.ncbi.nlm.nih.gov/pubmed/8839925] is_a: UBERON:0000063 ! organ subunit +is_a: UBERON:0004119 ! endoderm-derived structure property_value: dc-contributor https://orcid.org/0000-0003-2034-601X relationship: part_of UBERON:0002107 ! liver relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -274772,6 +277311,7 @@ def: "Hepatic serous coat; peritoneal covering of the liver, enclosing almost al synonym: "serosa of liver" EXACT [FMA:15811] synonym: "tunica serosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/serosa+of+liver] {synonymtypedef="LATIN"} is_a: UBERON:0000042 ! serous membrane +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002107 ! liver property_value: dc-contributor https://orcid.org/0000-0003-2034-601X @@ -274786,6 +277326,7 @@ synonym: "subserosal tissue of liver" EXACT [] synonym: "subserous layer of liver" EXACT [] synonym: "tela subserosa (hepar)" EXACT [FMA:15821] synonym: "tela subserosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/subserosa+of+liver] +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0012375 ! subserosa intersection_of: UBERON:0012375 ! subserosa intersection_of: part_of UBERON:0002107 ! liver @@ -274856,7 +277397,7 @@ id: UBERON:8410003 name: ductal plate def: "In human, ductal plate is a double-layered cylindrical structure of bile duct epithelium that surrounds the portal ramifications by the eighth gestational week. After approximately the 12th gestational week, remodelling of ductal plate begins, and maturity is attained by the end of gestation or early postnatal period." [http://orcid.org/0000-0002-7073-9172, http://www.ncbi.nlm.nih.gov/pubmed/28515578] subset: added_for_HCA -is_a: CARO:0000000 ! anatomical entity +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0010000 ! multicellular anatomical structure property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: existence_ends_during UBERON:0007220 ! late embryonic stage @@ -274945,7 +277486,7 @@ synonym: "fimbriae of fallopian tube" EXACT PLURAL [] synonym: "fimbriae of uterine tube" EXACT PLURAL [] xref: FMA:18308 xref: http://orcid.org/0000-0001-7505-5418 -is_a: UBERON:0013515 ! subdivision of oviduct +is_a: UBERON:0003889 ! fallopian tube property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:0003889 ! fallopian tube relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -274979,6 +277520,7 @@ id: UBERON:8410013 name: afferent lymphatic vessel valve def: "A valve in an afferent lymphatic vessel. It manages the flow of lymphatic fluid into the lymph node carrying immune cells and is essential for the correct flow of fluid through the lymphatic system." [http://orcid.org/0000-0003-4183-8865/] synonym: "valve of afferent lymphatic vessel" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0034949 ! lymphatic valve intersection_of: UBERON:0034949 ! lymphatic valve intersection_of: part_of UBERON:0010396 ! afferent lymphatic vessel @@ -275118,6 +277660,7 @@ id: UBERON:8410024 name: intestinal junction def: "An anatomical junction between two parts of the intestine." [https://orcid.org/0000-0002-7073-9172] synonym: "junction of intestine" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:1100000 ! digestive tract junction intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0004921 ! subdivision of digestive tract @@ -275133,6 +277676,7 @@ def: "The region of the prostate gland anterior to the central and peripheral zo subset: added_for_HCA synonym: "prostate transition zone" EXACT [] synonym: "transition zone of human prostate" NARROW [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -275146,6 +277690,7 @@ def: "The region of the prostate that is located posterior to the central and tr subset: added_for_HCA synonym: "peripheral zone of human prostate" NARROW [] synonym: "prostate peripheral zone" EXACT [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ property_value: dc-contributor https://orcid.org/0000-0002-2825-0621 @@ -275159,6 +277704,7 @@ def: "The region of the prostate gland that is located between the peripheral an subset: added_for_HCA synonym: "central zone of human prostate" NARROW [] synonym: "prostate central zone" EXACT [] +is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0005156 ! reproductive structure is_a: UBERON:0034944 ! zone of organ relationship: part_of UBERON:0002367 ! prostate gland @@ -275220,6 +277766,7 @@ id: UBERON:8410032 name: trabecular sinus of lymph node def: "The trabecular sinus is the lymph-filled space outside the trabeculae between lobules of the lymph node. This is a continuation of the subcapsular sinus which receives the afferent vessels and is present beneath the capsule. This space is traversed by both reticular fibers and cells in the lymph." [http://orcid.org/0000-0003-4183-8865/, http://www.ncbi.nlm.nih.gov/pubmed/32491649, WikipediaVersioned:Lymph_node&oldid=1020495758] synonym: "lymph node trabecular sinus" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000464 ! anatomical space intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002195 ! trabecula of lymph node @@ -275443,7 +277990,6 @@ id: UBERON:8410050 name: anorectum def: "A subdivision of the digestive tract in humans that includes the rectum, the anal canal and the anus." [http://orcid.org/0000-0002-6826-8770, http://orcid.org/0000-0003-3440-1876, http://www.ncbi.nlm.nih.gov/pubmed/29742860, https://doi.org/10.1007/978-3-319-26938-2_8, https://doi.org/10.1148/rg.2015150037] synonym: "anorectal canal" NARROW [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004921 ! subdivision of digestive tract intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: has_part UBERON:0000159 ! anal canal @@ -275680,6 +278226,7 @@ def: "The section of the lymph node capsule that faces the subcapsular sinus. In synonym: "ceiling of subcapsular sinus of lymph node" EXACT [] synonym: "floor of capsule of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node ceiling" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 @@ -275693,6 +278240,7 @@ def: "The section of the lymph node cortex that faces the subcapsular sinus. In synonym: "ceiling of cortex of lymph node" EXACT [] synonym: "floor of subcapsular sinus of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node floor" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 @@ -275704,6 +278252,7 @@ name: medullary region of kidney def: "A part of the kidney that comprises kidney pyramids and renal columns." [http://orcid.org/0000-0002-7073-9172] comment: Note that 'medullary region of kidney' is not synonymous with 'renal medulla'. The former covers kidney pyramids and renal columns, which are histologically different, while the latter is composed of kidney pyramids only. synonym: "kidney medullary region" EXACT [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000064 ! organ part relationship: has_part UBERON:0001284 ! renal column relationship: has_part UBERON:0004200 ! kidney pyramid @@ -275718,6 +278267,7 @@ synonym: "cortical sinus" RELATED [] synonym: "lymphatic labyrinth" RELATED [] synonym: "paracortical sinus" BROAD [] synonym: "peripheral sinus" RELATED [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0004111 ! anatomical conduit property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410066 ! lymph node paracortex @@ -275728,6 +278278,7 @@ id: UBERON:8410075 name: lymph node paracortical cord def: "Lymph node paracortical parenchyma containing dense networks of T cells, B cells, fibroblastic reticular cells, and dendritic cells." [http://www.ncbi.nlm.nih.gov/pubmed/17067937, http://www.ncbi.nlm.nih.gov/pubmed/49306] synonym: "paracortical cord" BROAD [] +is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0000353 ! parenchyma property_value: dc-contributor http://orcid.org/0000-0002-2825-0621 relationship: part_of UBERON:8410066 ! lymph node paracortex @@ -275754,6 +278305,7 @@ def: "A submucosal gland found in a respiratory tract." [http://orcid.org/0000-0 synonym: "respiratory tract submucosal gland" EXACT [] synonym: "submucosal gland of respiratory tract" EXACT [] xref: EFO:0010666 +is_a: UBERON:0004119 ! endoderm-derived structure is_a: UBERON:0011148 ! submucosal gland is_a: UBERON:0036225 ! respiratory system gland intersection_of: UBERON:0011148 ! submucosal gland @@ -275813,7 +278365,6 @@ name: cortical layer VIb def: "The deepest layer of the neocortex. While layer 6b is considered part of layer 6, it is distinct morphologically, genetically, and developmentally from the rest of layer 6. Neurons in L6b project to cortical targets and higher-order thalamus and develop from a precursor population that arises from the subplate." [http://www.ncbi.nlm.nih.gov/pubmed/32160552] synonym: "cerebral cortex layer 6b" EXACT [] synonym: "neocortex layer 6b" EXACT [] -is_a: CARO:0000000 ! anatomical entity is_a: UBERON:0002301 ! layer of neocortex relationship: develops_from UBERON:0004035 ! cortical subplate relationship: part_of UBERON:0005395 ! cortical layer VI @@ -276673,6 +279224,7 @@ comment: This is the transitive form of the develops from relation xref: RO:0002202 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant +holds_over_chain: part_of develops_from is_transitive: true is_a: developmentally_preceded_by ! developmentally preceded by is_a: has_developmental_contribution_from ! has developmental contribution from From dc5c6d2abf70a9ecfd9e9ad73fe8b3bb3aac5b3a Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 5 Apr 2022 15:18:38 +0300 Subject: [PATCH 5/8] Revert "Update uberon-edit.obo" This reverts commit 96c3bc96c4c7c915e24658e938884f0acb462b1f. --- src/ontology/uberon-edit.obo | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 86a3d175c9..0c31d17365 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -223948,7 +223948,6 @@ xref: RO:0002285 id: develops_from name: develops_from xref: RO:0002202 -holds_over_chain: part_of develops_from is_transitive: true is_a: has_developmental_contribution_from ! has developmental contribution from inverse_of: develops_into ! develops_into From 2a9b51592238a4c37f58944e7187eb7aabeefc08 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 5 Apr 2022 15:22:33 +0300 Subject: [PATCH 6/8] Merging in develops from chain is component see https://github.com/obophenotype/uberon/issues/2381 --- src/ontology/components/develops-from-chains.owl | 13 +++++++++++++ src/ontology/uberon.Makefile | 6 +++++- 2 files changed, 18 insertions(+), 1 deletion(-) create mode 100644 src/ontology/components/develops-from-chains.owl diff --git a/src/ontology/components/develops-from-chains.owl b/src/ontology/components/develops-from-chains.owl new file mode 100644 index 0000000000..10891b3159 --- /dev/null +++ b/src/ontology/components/develops-from-chains.owl @@ -0,0 +1,13 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +SubObjectPropertyOf(ObjectPropertyChain( ) ) + +) \ No newline at end of file diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 5a4b97ee7e..100ce1ee77 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -176,12 +176,16 @@ $(TMPDIR)/is_ok: $(TMPDIR)/materialized.owl ## **Hacking_Feb_2022** TODO - rewrite as as expansions from annotation axioms using SPARQL. Expanded axioms --> component (as for taxon restrictions). TMP_REFL=$(COMPONENTSDIR)/reflexivity_axioms.owl +DEVELOPS_FROM_CHAIN=$(COMPONENTSDIR)/develops-from-chains.owl +# see https://github.com/obophenotype/uberon/issues/2381 + $(TMPDIR)/materialized.owl: $(TMPDIR)/unreasoned.owl $(TMP_REFL) - $(ROBOT) merge -i $< --collapse-import-closure false \ + $(ROBOT) merge -i $< -i $(DEVELOPS_FROM_CHAIN) --collapse-import-closure false \ relax \ materialize -T $(CONFIGDIR)/basic_properties.txt -r elk \ reason -r elk --exclude-duplicate-axioms true --equivalent-classes-allowed asserted-only \ unmerge -i $(TMP_REFL) \ + unmerge -i $(DEVELOPS_FROM_CHAIN) \ annotate -O $(URIBASE)/uberon/materialized.owl -V $(RELEASE)/materialized.owl -o $@ 2>&1 > $@.LOG .PRECIOUS: $(TMPDIR)/materialized.owl From 7163b00b8ef9ff61ec831009f9c93fa430e0da48 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 5 Apr 2022 16:21:42 +0300 Subject: [PATCH 7/8] Update uberon.Makefile --- src/ontology/uberon.Makefile | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index 100ce1ee77..d0014807cd 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -110,8 +110,13 @@ tmp/uberon-merged.owl: $(SRC) $(OWLSRC): tmp/uberon-merged.owl $(COMPONENTSDIR)/disjoint_union_over.ofn $(REPORTDIR)/$(SRC)-gocheck $(REPORTDIR)/$(SRC)-iconv $(SCRIPTSDIR)/expand-dbxref-literals.pl echo "STRONG WARNING: issues/contributor.owl needs to be manually updated." $(OWLTOOLS) --no-logging $< $(COMPONENTSDIR)/disjoint_union_over.ofn issues/contributor.owl --merge-support-ontologies --expand-macros -o $@ && $(SCRIPTSDIR)/expand-dbxref-literals.pl $@ > $@.tmp - $(ROBOT) query -i $@.tmp --update $(SPARQLDIR)/taxon_constraint_never_in_taxon.ru --update $(SPARQLDIR)/remove_axioms.ru -o $@ \ - query --update ../sparql/delete-definition-dot.ru merge -i imports/ro_import.owl -o $@ + # The previous step seems to be necessary because somehow the expand-dbxref-literals script expects the owtools output.. No idea why + $(ROBOT) merge -i $@.tmp \ + query \ + --update $(SPARQLDIR)/taxon_constraint_never_in_taxon.ru \ + --update $(SPARQLDIR)/remove_axioms.ru \ + --update $(SPARQLDIR)/delete-definition-dot.ru \ + merge -i imports/ro_import.owl -o $@ $(TMPDIR)/NORMALIZE.obo: $(SRC) $(ROBOT) convert -i $< -o $@.tmp.obo && mv $@.tmp.obo $@ From 404422a0d46dc4bddae292ca2baca1b13b58d7fe Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 5 Apr 2022 10:08:03 -0700 Subject: [PATCH 8/8] uberon.obo changes 2 --- uberon.obo | 25 ++++++++++++------------- 1 file changed, 12 insertions(+), 13 deletions(-) diff --git a/uberon.obo b/uberon.obo index cc1cbd8f70..9a09c3343d 100644 --- a/uberon.obo +++ b/uberon.obo @@ -49689,8 +49689,8 @@ name: habenular trigone def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [http://en.wikipedia.org/wiki/Habenular_trigone] comment: superclass in BTO is thalamic nucleus, not present in most ontologies synonym: "trigone of habenulae" RELATED [BTO:0002700] -synonym: "trigonum habenulae" RELATED [BTO:0002700] synonym: "trigonum habenulae" RELATED LATIN [http://en.wikipedia.org/wiki/Habenular_trigone] +synonym: "trigonum habenulae" RELATED [BTO:0002700] xref: BAMS:hbt xref: BTO:0002700 xref: FMA:74868 @@ -83487,8 +83487,8 @@ xref: DMBA:16629 xref: EMAPA:35597 xref: FMA:68464 xref: HBA:9047 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 {source="BIRNLEX:896"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=514 {source="BIRNLEX:896"} xref: http://linkedlifedata.com/resource/umls/id/C0262291 xref: http://www.snomedbrowser.com/Codes/Details/369250001 xref: MA:0001072 @@ -95251,8 +95251,8 @@ xref: DMBA:17007 xref: EMAPA:35914 xref: FMA:72435 xref: HBA:9069 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=518 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=518 {source="BIRNLEX:1421"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=518 xref: http://linkedlifedata.com/resource/umls/id/C0175394 xref: http://www.snomedbrowser.com/Codes/Details/369244006 xref: MA:0001031 @@ -98400,8 +98400,8 @@ xref: DMBA:16589 xref: EMAPA:37921 {source="MA:th"} xref: FMA:72405 xref: HBA:9086 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 {source="BIRNLEX:1037"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=472 xref: http://en.wikipedia.org/wiki/Olivary_pretectal_nucleus xref: http://linkedlifedata.com/resource/umls/id/C0175359 xref: MBA:706 @@ -103857,8 +103857,8 @@ xref: BIRNLEX:1657 xref: FMA:61909 xref: FMA:71029 xref: HBA:4165 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 {source="BIRNLEX:1657"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=134 xref: http://en.wikipedia.org/wiki/Transverse_temporal_gyrus xref: http://linkedlifedata.com/resource/umls/id/C0262198 xref: http://www.snomedbrowser.com/Codes/Details/279192003 @@ -106283,8 +106283,8 @@ synonym: "nucleus basalis lateralis amygdalae" RELATED LATIN [NeuroNames:247] xref: BAMS:BAL xref: BIRNLEX:2695 xref: FMA:68857 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 {source="BIRNLEX:2695"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=247 xref: http://linkedlifedata.com/resource/umls/id/C0694601 xref: UMLS:C0694601 {source="BIRNLEX:2695"} is_a: UBERON:0005401 ! cerebral hemisphere gray matter @@ -147534,8 +147534,8 @@ synonym: "inferior ganglion of glossopharyngeal nerve" EXACT [FMA:53475] synonym: "inferior glossopharyngeal ganglion" EXACT [FMA:53475] synonym: "inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve" EXACT [MP:0001084] synonym: "ninth cranial nerve inferior ganglion" EXACT [FMA:53475] -synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084] synonym: "petrosal ganglion" RELATED [MP:0001084] +synonym: "petrosal ganglion" RELATED [http://www.merriam-webster.com/medical/petrosal%20ganglion, MP:0001084] synonym: "petrous ganglion" RELATED [http://en.wikipedia.org/wiki/File\:Gray791.png, http://en.wikipedia.org/wiki/Inferior_ganglion_of_glossopharyngeal_nerve, http://www.merriam-webster.com/medical/petrous%20ganglion] xref: EHDAA2:0000711 xref: EMAPA:17153 @@ -156833,8 +156833,8 @@ synonym: "principle auditory receptive areas" EXACT [BIRNLEX:1582] xref: BIRNLEX:1582 xref: BIRNLEX:1774 xref: FMA:68638 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 {source="BIRNLEX:1582"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=95 xref: http://linkedlifedata.com/resource/umls/id/C1272502 xref: UMLS:C1272502 {source="BIRNLEX:1774"} is_a: UBERON:0013529 {source="NIFSTD"} ! Brodmann area @@ -156905,8 +156905,8 @@ xref: BAMS:BG xref: BAMS:BNC xref: BIRNLEX:1629 xref: EV:0100182 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:1629"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=224 {source="BIRNLEX:1629"} xref: http://linkedlifedata.com/resource/umls/id/C0004781 xref: UMLS:C0004781 {source="BIRNLEX:1629"} is_a: UBERON:0007245 ! nuclear complex of neuraxis @@ -157221,8 +157221,8 @@ synonym: "fibrae nervi accessorius" RELATED LATIN [NeuroNames:792] xref: BAMS:11nf xref: BIRNLEX:916 xref: FMA:72626 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 {source="BIRNLEX:916"} +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=792 xref: http://linkedlifedata.com/resource/umls/id/C0175549 xref: UMLS:C0175549 {source="BIRNLEX:916"} is_a: UBERON:0000122 ! neuron projection bundle @@ -169796,8 +169796,8 @@ name: superficial external pudendal artery def: "An artery that arises from the medial side of the femoral artery, close to the superficial epigastric artery and superficial iliac circumflex artery." [http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery] comment: After piercing the femoral sheath and fascia cribrosa, it courses medialward, across the spermatic cord (or round ligament in the female), to be distributed to the integument on the lower part of the abdomen, the penis and scrotum in the male, and the labium majus in the female, anastomosing with branches of the internal pudendal artery. it crosses superficial to the inguinal ligament[WP] synonym: "arteria pudenda externa superficialis" RELATED LATIN [http://en.wikipedia.org/wiki/Superficial_external_pudendal_artery] -synonym: "arteriae pudendae externa superficialis" EXACT LATIN [https://doi.org/10.1002/ca.23705] synonym: "arteriae pudendae externa superficialis" EXACT DEPRECATED [https://doi.org/10.1002/ca.23705] +synonym: "arteriae pudendae externa superficialis" EXACT LATIN [https://doi.org/10.1002/ca.23705] synonym: "arteriae pudendales externa superficialis" EXACT LATIN [https://doi.org/10.1002/ca.23705] synonym: "superficial external pudic artery" EXACT [] xref: FMA:20738 @@ -224589,8 +224589,8 @@ xref: BAMS:APS xref: BIRNLEX:1096 xref: DHBA:10642 xref: FMA:61891 -xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"} xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 +xref: http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=282 {source="BIRNLEX:1096"} xref: http://en.wikipedia.org/wiki/Anterior_perforated_substance xref: http://linkedlifedata.com/resource/umls/id/C0162436 xref: http://www.snomedbrowser.com/Codes/Details/369108006 @@ -279224,7 +279224,6 @@ comment: This is the transitive form of the develops from relation xref: RO:0002202 domain: BFO:0000004 ! independent continuant range: BFO:0000004 ! independent continuant -holds_over_chain: part_of develops_from is_transitive: true is_a: developmentally_preceded_by ! developmentally preceded by is_a: has_developmental_contribution_from ! has developmental contribution from