diff --git a/bfo-axioms.owl b/bfo-axioms.owl index c0f4faf8..b3206d3e 100644 --- a/bfo-axioms.owl +++ b/bfo-axioms.owl @@ -102,4 +102,3 @@ - diff --git a/bfo-classes-minimal.owl b/bfo-classes-minimal.owl index 7e8b2527..ff086ca2 100644 --- a/bfo-classes-minimal.owl +++ b/bfo-classes-minimal.owl @@ -160,4 +160,3 @@ - diff --git a/src/ontology/CHANGES b/src/ontology/CHANGES.md similarity index 100% rename from src/ontology/CHANGES rename to src/ontology/CHANGES.md diff --git a/src/ontology/README.txt b/src/ontology/README.txt deleted file mode 100644 index a59fdf97..00000000 --- a/src/ontology/README.txt +++ /dev/null @@ -1,17 +0,0 @@ -OBO Relation Ontology -===================== - -This is the replacement ontology for the deprecated OBO_REL. - -See this announcement: - http://groups.google.com/group/obo-relations/browse_thread/thread/29fc616eb570f7dc/fc0647f190b5f178 - -Project page: - - http://code.google.com/p/obo-relations - -Ontology PURLs: - - http://purl.obolibrary.org/obo/ro.owl - http://purl.obolibrary.org/obo/ro.obo - diff --git a/src/ontology/ro_bfo_1_2_bridge.owl b/src/ontology/attic/ro_bfo_1_2_bridge.owl similarity index 100% rename from src/ontology/ro_bfo_1_2_bridge.owl rename to src/ontology/attic/ro_bfo_1_2_bridge.owl diff --git a/src/ontology/cut-release.sh b/src/ontology/cut-release.sh deleted file mode 100755 index af5ab155..00000000 --- a/src/ontology/cut-release.sh +++ /dev/null @@ -1,2 +0,0 @@ -#!/bin/sh -head -1000 ro.owl | grep versionIRI | perl -ne 'print "svn copy -m new-release https://obo-relations.googlecode.com/svn/trunk/src/ontology https://obo-relations.googlecode.com/svn/releases/$1\n" if /(\d\d\d\d-\d\d-\d\d)/' diff --git a/src/ontology/omo_import.owl b/src/ontology/omo_import.owl deleted file mode 100644 index 1d64d4a8..00000000 --- a/src/ontology/omo_import.owl +++ /dev/null @@ -1,27 +0,0 @@ - -Prefix(:=) -Prefix(dc:=) -Prefix(dce:=) -Prefix(obo:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(cito:=) -Prefix(foaf:=) -Prefix(rdfs:=) -Prefix(skos:=) -Prefix(swrl:=) -Prefix(swrla:=) -Prefix(subsets:=) -Prefix(oboInOwl:=) - - -Ontology( - -Declaration(AnnotationProperty(obo:OMO_0002000)) - -AnnotationAssertion(obo:IAO_0000115 obo:OMO_0002000 "Links an annotation property to a SPARQL CONSTRUCT query which is meant to provide semantics for a shortcut relation.") -AnnotationAssertion(rdfs:label obo:OMO_0002000 "defined by construct") - -) \ No newline at end of file diff --git a/src/ontology/other_import.ofn b/src/ontology/other_import.ofn deleted file mode 100644 index 689e57d5..00000000 --- a/src/ontology/other_import.ofn +++ /dev/null @@ -1,137 +0,0 @@ -Prefix(:=) -Prefix(dc:=) -Prefix(obo:=) -Prefix(owl:=) -Prefix(rdf:=) -Prefix(xml:=) -Prefix(xsd:=) -Prefix(cito:=) -Prefix(foaf:=) -Prefix(rdfs:=) -Prefix(swrl:=) -Prefix(swrla:=) -Prefix(swrlb:=) -Prefix(subsets:=) -Prefix(oboInOwl:=) - - -Ontology( -# Class: obo:CARO_0000003 (anatomical structure) - -# Annotation Property: obo:IAO_0000589 (OBO foundry unique label) - -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000589 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0000589 "OBO foundry unique label"@en) - -AnnotationAssertion(obo:IAO_0000412 obo:CARO_0000003 obo:caro.owl) -AnnotationAssertion(rdfs:label obo:CARO_0000003 "anatomical structure"@en) -SubClassOf(obo:CARO_0000003 obo:CARO_0000006) - -# Class: obo:CARO_0000006 (material anatomical entity) - -AnnotationAssertion(obo:IAO_0000412 obo:CARO_0000006 obo:caro.owl) -AnnotationAssertion(rdfs:label obo:CARO_0000006 "material anatomical entity"@en) -SubClassOf(obo:CARO_0000006 obo:BFO_0000040) - -# Class: obo:CARO_0000007 (immaterial anatomical entity) - -AnnotationAssertion(rdfs:label obo:CARO_0000007 "immaterial anatomical entity") -SubClassOf(obo:CARO_0000007 obo:BFO_0000141) - -# Class: obo:CARO_0000011 (connected anatomical system) - -AnnotationAssertion(rdfs:label obo:CARO_0000011 "connected anatomical system") -SubClassOf(obo:CARO_0000011 obo:CARO_0000006) -SubClassOf(obo:CARO_0000011 obo:RO_0002577) - -# Class: obo:CARO_0000014 (cell part) - -AnnotationAssertion(obo:IAO_0000412 obo:CARO_0000014 obo:caro.owl) -AnnotationAssertion(obo:IAO_0000589 obo:CARO_0000014 "cell part (CARO)") -AnnotationAssertion(rdfs:label obo:CARO_0000014 "cell part"@en) -SubClassOf(obo:CARO_0000014 obo:CARO_0000003) - -# Class: obo:CARO_0001000 (multi-cell-part structure) - -AnnotationAssertion(obo:IAO_0000412 obo:CARO_0001000 obo:caro.owl) -AnnotationAssertion(rdfs:label obo:CARO_0001000 "multi-cell-part structure"@en) -SubClassOf(obo:CARO_0001000 obo:CARO_0000003) - -# Class: obo:CARO_0001001 (neuron projection bundle) - -AnnotationAssertion(obo:IAO_0000412 obo:CARO_0001001 obo:caro.owl) -AnnotationAssertion(rdfs:label obo:CARO_0001001 "neuron projection bundle"@en) -SubClassOf(obo:CARO_0001001 obo:CARO_0001000) - -# Class: obo:CARO_0010000 (multicellular anatomical structure) - -AnnotationAssertion(obo:IAO_0000412 obo:CARO_0010000 obo:caro.owl) -AnnotationAssertion(rdfs:label obo:CARO_0010000 "multicellular anatomical structure"^^xsd:string) -SubClassOf(obo:CARO_0010000 obo:CARO_0000003) -SubClassOf(obo:CARO_0010000 ObjectAllValuesFrom(obo:RO_0002207 obo:CARO_0010000)) - -# Class: obo:CL_0000000 (cell) - -AnnotationAssertion(obo:IAO_0000412 obo:CL_0000000 obo:cl.owl) -AnnotationAssertion(rdfs:label obo:CL_0000000 "cell"@en) -SubClassOf(obo:CL_0000000 obo:CARO_0000003) -SubClassOf(obo:CL_0000000 ObjectAllValuesFrom(obo:RO_0002207 obo:CL_0000000)) - -# Class: obo:CL_0000540 (neuron) - -AnnotationAssertion(obo:IAO_0000412 obo:CL_0000540 obo:cl.owl) -AnnotationAssertion(rdfs:label obo:CL_0000540 "neuron"@en) -SubClassOf(obo:CL_0000540 obo:CL_0000000) - -# Class: obo:ENVO_00000428 (biome) - -AnnotationAssertion(rdfs:label obo:ENVO_00000428 "biome"^^xsd:string) -SubClassOf(obo:ENVO_00000428 obo:ENVO_01000254) - -# Class: obo:ENVO_01000254 (environmental system) - -AnnotationAssertion(rdfs:label obo:ENVO_01000254 "environmental system"^^xsd:string) -SubClassOf(obo:ENVO_01000254 obo:RO_0002577) - -# Class: obo:GO_0003674 (molecular_function) - -AnnotationAssertion(obo:IAO_0000589 obo:GO_0003674 "molecular process") -SubClassOf(obo:GO_0003674 obo:BFO_0000015) -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000078 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0000078 "curation status specification"@en) -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000122 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0000122 "ready for release"@en) -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000125 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0000125 "pending final vetting"@en) -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000225 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0000225 "obsolescence reason specification"@en) -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0000428 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0000428 "requires discussion"@en) -AnnotationAssertion(obo:IAO_0000114 obo:IAO_0100001 obo:IAO_0000125) -AnnotationAssertion(rdfs:label obo:IAO_0100001 "term replaced by"@en) - -# Class: obo:PATO_0000001 (quality) - -AnnotationAssertion(obo:IAO_0000589 obo:PATO_0000001 "quality (PATO)") -SubClassOf(obo:PATO_0000001 obo:BFO_0000020) - -# Class: obo:PATO_0000051 (morphology) - -SubClassOf(obo:PATO_0000051 obo:BFO_0000019) - -# Class: obo:PATO_0000052 (shape) - -AnnotationAssertion(rdfs:label obo:PATO_0000052 "shape"^^xsd:string) -SubClassOf(obo:PATO_0000052 obo:PATO_0000051) - -# Class: obo:PATO_0000402 (branched) - -AnnotationAssertion(rdfs:label obo:PATO_0000402 "branched"^^xsd:string) -SubClassOf(obo:PATO_0000402 obo:PATO_0002009) - -# Class: obo:PATO_0002009 (branchiness) - -AnnotationAssertion(rdfs:label obo:PATO_0002009 "branchiness"^^xsd:string) -SubClassOf(obo:PATO_0002009 obo:PATO_0000052) - -) diff --git a/src/ontology/ro-diff.html b/src/ontology/ro-diff.html deleted file mode 100644 index 4cf73eb3..00000000 --- a/src/ontology/ro-diff.html +++ /dev/null @@ -1,785 +0,0 @@ -

Ontology Diff Report

-

Original Ontology

-
    -
  • IRI: http://purl.obolibrary.org/obo/ro.owl
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  • VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2014-02-28/ro.owl
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-

New Ontology

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    -
  • IRI: http://purl.obolibrary.org/obo/ro.owl
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  • VersionIRI: http://purl.obolibrary.org/obo/ro/releases/2014-05-03/ro.owl
    • -
-

Report for classes

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Class objects lost from source: 0

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Class objects new in target: 16

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New Class : quality

- -

New Class : mutualism

- -

New Class : commensalism

- -

New Class : immaterial entity

- -

New Class : quality

- -

New Class : specifically dependent continuant

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New Class : nucleus

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New Class : dependent continuant

- -

New Class : kinase activity

- -

New Class : ubiquitin-protein ligase activity

- -

New Class : molecular_function

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New Class : morphology

- -

New Class : parasitism

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New Class : linear

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New Class : symbiosis, encompassing mutualism through parasitism

- -

New Class : biological_process

- -

Changed Class objects: 2

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Changes for: habitat

- -

Changes for: laminar

- -

Report for properties

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ObjectProperty objects lost from source: 0

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ObjectProperty objects new in target: 64

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New ObjectProperty : is symbiosis

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New ObjectProperty : is commensalism

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New ObjectProperty : is mutualism

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New ObjectProperty : is parasitism

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New ObjectProperty : provides nutrients for

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New ObjectProperty : has vector

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New ObjectProperty : partner in

-
    -
  • partner in curator note Experimental: relation used for defining interaction relations. An interaction relation holds when there is an interaction event with two partners. In a directional interaction, one partner is deemed the subject, the other the target
    • -
  • partner in label partner in
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  • SubObjectPropertyOf( partner in participates in )
    • -
-

New ObjectProperty : subject participant in

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New ObjectProperty : target participant in

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New ObjectProperty : helper property

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New ObjectProperty : pollinated by

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New ObjectProperty : acquires nutrients from

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New ObjectProperty : has host

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New ObjectProperty : pollinates

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New ObjectProperty : preyed upon by

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New ObjectProperty : is vector for

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New ObjectProperty : has symptom

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New ObjectProperty : host of

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New ObjectProperty : molecularly increases activity of

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New ObjectProperty : transmitted by

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New ObjectProperty : phosphorylates

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New ObjectProperty : molecularly controls

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New ObjectProperty : molecularly decreases activity of

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New ObjectProperty : interacts with via parasite-host interaction

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New ObjectProperty : parasite of

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New ObjectProperty : parasitized by

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New ObjectProperty : semibiotically interacts with

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New ObjectProperty : symbiotically interacts with

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New ObjectProperty : commensually interacts with

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New ObjectProperty : mutualistically interacts with

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New ObjectProperty : involved in positive regulation of

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New ObjectProperty : trophically interacts with

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New ObjectProperty : preys on

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New ObjectProperty : molecularly interacts with

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New ObjectProperty : biotically interacts with

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New ObjectProperty : interacts with

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    -
  • interacts with seeAlso http://purl.obolibrary.org/obo/MI_0914
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  • ObjectPropertyDomain( interacts with material entity )
    • -
  • interacts with label interacts with
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  • interacts with curator note Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
    • -
  • SymmetricObjectProperty( interacts with )
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  • interacts with definition A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
    • -
  • interacts with editor note This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
    • -
  • ObjectPropertyRange( interacts with material entity )
    • -
-

New ObjectProperty : genetically interacts with

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New ObjectProperty : enables activity in

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New ObjectProperty : contributes to morphology of

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New ObjectProperty : involved in negative regulation of

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New ObjectProperty : involved in or regulates

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New ObjectProperty : ubiquitinates

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New ObjectProperty : is ubiquitination

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New ObjectProperty : is kinase activity

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New ObjectProperty : composed primarily of

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New ObjectProperty : is evidence for

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New ObjectProperty : is eaten by

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New ObjectProperty : eats

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New ObjectProperty : has part that occurs in

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New ObjectProperty : child nucleus of in male

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New ObjectProperty : child nucleus of in hermaphrodite

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New ObjectProperty : child nucleus of

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New ObjectProperty : has role

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New ObjectProperty : in homocracy relationship with

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New ObjectProperty : in homology relationship with

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New ObjectProperty : differs in

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New ObjectProperty : involved in regulation of

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New ObjectProperty : causally downstream of or within

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New ObjectProperty : differs in attribute

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New ObjectProperty : differs in attribute of

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New ObjectProperty : causally upstream of or within

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New ObjectProperty : has boundary

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New ObjectProperty : boundary of

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New ObjectProperty : coincident with

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Changed ObjectProperty objects: 22

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Changes for: enables

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Changes for: has developmental contribution from

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Changes for: developmentally induced by

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Changes for: inheres in part of

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    -
  • Added -
    • -
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Changes for: has end location

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Changes for: has start location

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Changes for: involved in

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Changes for: enabled_by

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Changes for: regulated by

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Changes for: develops in

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Changes for: has prototype

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Changes for: regulates

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Changes for: results in developmental progression of

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Changes for: attached to part of

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    -
  • Added -
    • -
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Changes for: causally upstream of

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Changes for: bounding layer of

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Changes for: causally downstream of

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Changes for: has indirect output

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Changes for: has direct output

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Changes for: has indirect input

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Changes for: has direct input

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Changes for: shares ancestor with

- diff --git a/src/ontology/ro-diff.md b/src/ontology/ro-diff.md deleted file mode 100644 index 080ed60a..00000000 --- a/src/ontology/ro-diff.md +++ /dev/null @@ -1,223 +0,0 @@ -# Ontology comparison - -## Left -- Ontology IRI: `http://purl.obolibrary.org/obo/ro.owl` -- Version IRI: `http://purl.obolibrary.org/obo/ro/releases/2021-06-23/ro.owl` -- Loaded from: `file:/work/src/ontology/ro-lastbuild.owl` - -## Right -- Ontology IRI: `http://purl.obolibrary.org/obo/ro.owl` -- Version IRI: `http://purl.obolibrary.org/obo/ro/releases/2021-08-04/ro.owl` -- Loaded from: `file:/work/src/ontology/ro.owl` - -### Ontology imports - - - -### Ontology annotations - - - -### GO_0044403 `http://purl.obolibrary.org/obo/GO_0044403` -#### Removed -- [GO_0044403](http://purl.obolibrary.org/obo/GO_0044403) SubClassOf [is symbiosis](http://purl.obolibrary.org/obo/RO_0002465) some Self - - - -### GO_0072519 `http://purl.obolibrary.org/obo/GO_0072519` -#### Removed -- [GO_0072519](http://purl.obolibrary.org/obo/GO_0072519) SubClassOf [is parasitism](http://purl.obolibrary.org/obo/RO_0002468) some Self - - - -### GO_0085030 `http://purl.obolibrary.org/obo/GO_0085030` -#### Removed -- [GO_0085030](http://purl.obolibrary.org/obo/GO_0085030) SubClassOf [is mutualism](http://purl.obolibrary.org/obo/RO_0002467) some Self - - - -### GO_0085031 `http://purl.obolibrary.org/obo/GO_0085031` -#### Removed -- [GO_0085031](http://purl.obolibrary.org/obo/GO_0085031) SubClassOf [is commensalism](http://purl.obolibrary.org/obo/RO_0002466) some Self - - - -### Rules -#### Removed -- [enables](http://purl.obolibrary.org/obo/RO_0002327)(?x, ?y), [occurs in](http://purl.obolibrary.org/obo/BFO_0000066)(?y, ?z) -> [part of](http://purl.obolibrary.org/obo/BFO_0000050)(?x, ?z) - - [comment](http://www.w3.org/2000/01/rdf-schema#comment) "This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps"" - - - -### _:genid2147484383 -#### Removed -- _:genid2147484383 [seeAlso](http://www.w3.org/2000/01/rdf-schema#seeAlso) [259](https://github.com/oborel/obo-relations/issues/259) - - - -### _:genid2147485108 - -#### Added -- _:genid2147485108 [seeAlso](http://www.w3.org/2000/01/rdf-schema#seeAlso) [259](https://github.com/oborel/obo-relations/issues/259) - - -### commensually interacts with `http://purl.obolibrary.org/obo/RO_0002441` -#### Removed -- [commensually interacts with](http://purl.obolibrary.org/obo/RO_0002441) [is symmetric relational form of process class](http://purl.obolibrary.org/obo/RO_0002561) [GO_0085031](http://purl.obolibrary.org/obo/GO_0085031) - - - -### disease arises from structure `http://purl.obolibrary.org/obo/RO_0004030` -#### Removed -- [disease arises from structure](http://purl.obolibrary.org/obo/RO_0004030) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A relationship between a disease and an anatomical structure where the material basis of the disease is some pathological change in the structure." - -#### Added -- [disease arises from structure](http://purl.obolibrary.org/obo/RO_0004030) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A relationship between a disease and an anatomical structure where the material basis of the disease is some pathological change in the structure. Anatomical structure includes cellular and sub-cellular entities, such as chromosome and organelles." - - -### has phenotype `http://purl.obolibrary.org/obo/RO_0002200` -#### Removed -- [has phenotype](http://purl.obolibrary.org/obo/RO_0002200) SubPropertyOf: [topObjectProperty](http://www.w3.org/2002/07/owl#topObjectProperty) - - - -### has synaptic IO in `http://purl.obolibrary.org/obo/RO_0013001` -#### Removed -- [has synaptic IO in](http://purl.obolibrary.org/obo/RO_0013001) [label](http://www.w3.org/2000/01/rdf-schema#label) "has synaptic IO in"@en - -#### Added -- [has synaptic IO in](http://purl.obolibrary.org/obo/RO_0013001) [label](http://www.w3.org/2000/01/rdf-schema#label) "has synaptic IO in region"@en - - -### innervates `http://purl.obolibrary.org/obo/RO_0002134` -#### Removed -- [innervates](http://purl.obolibrary.org/obo/RO_0002134) SubPropertyOf: [topObjectProperty](http://www.w3.org/2002/07/owl#topObjectProperty) - - - -### interacts with via parasite-host interaction `http://purl.obolibrary.org/obo/RO_0002443` -#### Removed -- [interacts with via parasite-host interaction](http://purl.obolibrary.org/obo/RO_0002443) [is symmetric relational form of process class](http://purl.obolibrary.org/obo/RO_0002561) [GO_0072519](http://purl.obolibrary.org/obo/GO_0072519) - - - -### mutualistically interacts with `http://purl.obolibrary.org/obo/RO_0002442` -#### Removed -- [mutualistically interacts with](http://purl.obolibrary.org/obo/RO_0002442) [is symmetric relational form of process class](http://purl.obolibrary.org/obo/RO_0002561) [GO_0085030](http://purl.obolibrary.org/obo/GO_0085030) - - - -### obsolete actively participates in `http://purl.obolibrary.org/obo/RO_0002217` -#### Removed -- [obsolete actively participates in](http://purl.obolibrary.org/obo/RO_0002217) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete actively participates in"@en - -#### Added -- [obsolete actively participates in](http://purl.obolibrary.org/obo/RO_0002217) [label](http://www.w3.org/2000/01/rdf-schema#label) "obsolete actively participates in"^^[string](http://www.w3.org/2001/XMLSchema#string) - -- [obsolete actively participates in](http://purl.obolibrary.org/obo/RO_0002217) [term replaced by](http://purl.obolibrary.org/obo/IAO_0100001) [process has causal agent](http://purl.obolibrary.org/obo/RO_0002608) - - -### obsolete has active participant `http://purl.obolibrary.org/obo/RO_0002218` -#### Removed -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [in_subset](http://www.geneontology.org/formats/oboInOwl#inSubset) [eco subset](http://purl.obolibrary.org/obo/ro/subsets#ro-eco) - -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "x has participant y if and only if x realizes some active role that inheres in y" - -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [has curation status](http://purl.obolibrary.org/obo/IAO_0000114) [pending final vetting](http://purl.obolibrary.org/obo/IAO_0000125) - -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [editor note](http://purl.obolibrary.org/obo/IAO_0000116) "This may be obsoleted and replaced by the original 'has agent' relation" - -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [example of usage](http://purl.obolibrary.org/obo/IAO_0000112) "'heart development' has active participant some Shh protein" - -#### Added -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "OBSOLETE x has participant y if and only if x realizes some active role that inheres in y" - -- [obsolete has active participant](http://purl.obolibrary.org/obo/RO_0002218) [term replaced by](http://purl.obolibrary.org/obo/IAO_0100001) [causal agent in process](http://purl.obolibrary.org/obo/RO_0002500) - - -### parasite of `http://purl.obolibrary.org/obo/RO_0002444` -#### Removed -- [parasite of](http://purl.obolibrary.org/obo/RO_0002444) [is asymmetric relational form of process class](http://purl.obolibrary.org/obo/RO_0002560) [GO_0072519](http://purl.obolibrary.org/obo/GO_0072519) - - - -### phenotype of `http://purl.obolibrary.org/obo/RO_0002201` -#### Removed -- [phenotype of](http://purl.obolibrary.org/obo/RO_0002201) SubPropertyOf: [topObjectProperty](http://www.w3.org/2002/07/owl#topObjectProperty) - - - -### receives synaptic input from neuron `http://purl.obolibrary.org/obo/RO_0013008` - -#### Added -- [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) [label](http://www.w3.org/2000/01/rdf-schema#label) "receives synaptic input from neuron"@en - -- [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A relationship between an anatomical structure (including cells) and a neuron that has a functionally relevant number of chemical synapses to it." - -- [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2021-05-26T08:40:18Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) [0000-0002-1373-1705](http://orcid.org/0000-0002-1373-1705) - -- ObjectProperty: [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) - -- [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) InverseOf [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) - -- [receives synaptic input from neuron](http://purl.obolibrary.org/obo/RO_0013008) SubPropertyOf: [synapsed by](http://purl.obolibrary.org/obo/RO_0002103) - - -### receives synaptic input in `http://purl.obolibrary.org/obo/RO_0013002` -#### Removed -- [receives synaptic input in](http://purl.obolibrary.org/obo/RO_0013002) [label](http://www.w3.org/2000/01/rdf-schema#label) "receives synaptic input in"@en - -#### Added -- [receives synaptic input in](http://purl.obolibrary.org/obo/RO_0013002) [label](http://www.w3.org/2000/01/rdf-schema#label) "receives synaptic input in region"@en - - -### releases neurotransmitter `http://purl.obolibrary.org/obo/RO_0002111` -#### Removed -- [releases neurotransmitter](http://purl.obolibrary.org/obo/RO_0002111) SubPropertyOf: [topObjectProperty](http://www.w3.org/2002/07/owl#topObjectProperty) - - - -### sends synaptic output to `http://purl.obolibrary.org/obo/RO_0013003` -#### Removed -- [sends synaptic output to](http://purl.obolibrary.org/obo/RO_0013003) [label](http://www.w3.org/2000/01/rdf-schema#label) "sends synaptic output to"@en - -#### Added -- [sends synaptic output to](http://purl.obolibrary.org/obo/RO_0013003) [label](http://www.w3.org/2000/01/rdf-schema#label) "sends synaptic output to region"@en - - -### sends synaptic output to cell `http://purl.obolibrary.org/obo/RO_0013009` - -#### Added -- [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) [creation_date](http://www.geneontology.org/formats/oboInOwl#creation_date) "2021-05-26T08:41:07Z"^^[dateTime](http://www.w3.org/2001/XMLSchema#dateTime) - -- [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) [label](http://www.w3.org/2000/01/rdf-schema#label) "sends synaptic output to cell"@en - -- [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) [created_by](http://www.geneontology.org/formats/oboInOwl#created_by) [0000-0002-1373-1705](http://orcid.org/0000-0002-1373-1705) - -- [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) [definition](http://purl.obolibrary.org/obo/IAO_0000115) "A relationship between a neuron and a cell that it has a functionally relevant number of chemical synapses to." - -- [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) [comment](http://www.w3.org/2000/01/rdf-schema#comment) "Not restricting range to 'cell' - object may be a muscle containing a cell targeted by the neuron." - -- ObjectProperty: [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) - -- [sends synaptic output to cell](http://purl.obolibrary.org/obo/RO_0013009) SubPropertyOf: [synapsed to](http://purl.obolibrary.org/obo/RO_0002120) - - -### symbiotically interacts with `http://purl.obolibrary.org/obo/RO_0002440` -#### Removed -- [symbiotically interacts with](http://purl.obolibrary.org/obo/RO_0002440) [is symmetric relational form of process class](http://purl.obolibrary.org/obo/RO_0002561) [GO_0044403](http://purl.obolibrary.org/obo/GO_0044403) - - - -### term replaced by `http://purl.obolibrary.org/obo/IAO_0100001` - -#### Added -- AnnotationProperty: [term replaced by](http://purl.obolibrary.org/obo/IAO_0100001) - - -### topObjectProperty `http://www.w3.org/2002/07/owl#topObjectProperty` -#### Removed -- ObjectProperty: [topObjectProperty](http://www.w3.org/2002/07/owl#topObjectProperty) -