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LIF Reader: index out of bounds #4199

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jburel opened this issue Jun 19, 2024 · 2 comments · May be fixed by #4222
Open

LIF Reader: index out of bounds #4199

jburel opened this issue Jun 19, 2024 · 2 comments · May be fixed by #4222

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@jburel
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jburel commented Jun 19, 2024

java.lang.ArrayIndexOutOfBoundsException: 32
	at loci.formats.in.LIFReader.initFile(LIFReader.java:587)
	at loci.formats.FormatReader.setId(FormatReader.java:1443)
	at loci.formats.ImageReader.setId(ImageReader.java:849)
	at ome.formats.importer.OMEROWrapper$4.setId(OMEROWrapper.java:167)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:234)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:293)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
	at loci.formats.Memoizer.setId(Memoizer.java:662)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:650)
	at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:427)

See https://www.openmicroscopy.org/qa2/qa/feedback/41723/

@melissalinkert
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A file was not submitted for QA 41723, correct? We can probably prevent this specific exception, but it may indicate a file that has other issues (which we wouldn't be able to test without the file itself).

@jburel
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jburel commented Jun 19, 2024

No file submitted, I requested it

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