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setup.py
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setup.py
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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Copyright 2008-2020 The Open Microscopy Environment, Glencoe Software, Inc.
All rights reserved.
Use is subject to license terms supplied in LICENSE.txt
"""
import glob
import sys
import os
from setuptools import (
Command,
setup,
find_packages,
)
from io import StringIO
from io import BytesIO
from shutil import (
copy,
rmtree,
)
from urllib.request import urlopen
from zipfile import ZipFile
import configparser
def get_blitz_location():
config_blitz_version = "5.5.5"
# simplified strings
defaultsect = configparser.DEFAULTSECT
version_key = "versions.omero-blitz"
url_key = "versions.omero-blitz-url"
# detect if in Jenkins or not
if "ZIP_FILE" in os.environ:
config_blitz_url = os.environ.get("ZIP_FILE")
elif "JENKINS_URL" in os.environ:
config_blitz_url = os.environ.get("JENKINS_URL")
config_blitz_url += "job/OMERO-build-build/lastSuccessfulBuild/"
config_blitz_url += "artifact/omero-blitz/build/distributions/"
config_blitz_url += "omero-blitz-VERSION-python.zip"
else:
config_blitz_url = (
"https://artifacts.openmicroscopy.org/artifactory/ome.releases/"
"org/openmicroscopy/omero-blitz/VERSION/"
"omero-blitz-VERSION-python.zip")
# load version.properties if available
config_path = os.environ.get("VERSION_PROPERTIES",
"artifact/version.properties")
if os.path.exists(config_path):
config_obj = configparser.RawConfigParser({
url_key: config_blitz_url,
version_key: config_blitz_version,
})
with open(config_path) as f:
config_str = StringIO('[%s]\n%s' % (defaultsect, f.read()))
config_obj.readfp(config_str)
config_blitz_url = config_obj.get(defaultsect, url_key)
config_blitz_version = config_obj.get(defaultsect, version_key)
# replace VERSION in the final url and return
config_blitz_url = config_blitz_url.replace(
"VERSION", config_blitz_version)
return config_blitz_url
def download_blitz_target():
loc = get_blitz_location()
if "ZIP_FILE" in os.environ:
zipfile = ZipFile(loc)
else:
print("Downloading %s ..." % loc, file=sys.stderr)
resp = urlopen(loc)
content = resp.read()
content = BytesIO(content)
zipfile = ZipFile(content)
zipfile.extractall("target")
def _relative_symlink_file(src, dst):
relsrc = os.path.relpath(src, os.path.dirname(dst))
try:
os.symlink(relsrc, dst)
print(src, dst)
except OSError as e:
if e.errno != 17:
raise
os.remove(dst)
os.symlink(relsrc, dst)
def copy_src_to_target(symlink=False):
for dirpath, dirs, files in os.walk("src"):
for filename in files:
topath = dirpath.replace("src", "target", 1)
if not os.path.exists(topath):
os.makedirs(topath)
fromfile = os.path.sep.join([dirpath, filename])
tofile = os.path.sep.join([topath, filename])
if symlink:
_relative_symlink_file(fromfile, tofile)
else:
copy(fromfile, tofile)
# https://coderwall.com/p/3q_czg/custom-subcommand-at-setup-py
class DevTargetCommand(Command):
"""
Recreate "target" with symlinks to files in "src" to ease development.
For example, `pip install -e .` will work.
Changes in files under "src" will be automatically seen in the installed
module.
If you add or remove files in src you must re-run both of these commands:
python setup.py devtarget
pip install -e .
"""
description = (
'Recreate target with symlinks to files in src to ease development')
user_options = []
def initialize_options(self):
pass
def finalize_options(self):
pass
def run(self):
rmtree('target')
download_blitz_target()
copy_src_to_target(symlink=True)
print("If this is installed as an editable module re-run "
"`pip install -e .`")
if not os.path.exists('target') and not "NO_ZIP_FILE" in os.environ:
download_blitz_target()
copy_src_to_target()
packageless = glob.glob("target/*.py")
packageless = [x[7:-3] for x in packageless]
packages = find_packages(where="target")
sys.path.append("target")
from omero_version import omero_version as ov # noqa
def read(fname):
"""
Utility function to read the README file.
:rtype : String
"""
return open(os.path.join(os.path.dirname(__file__), fname)).read()
setup(
name="omero-py",
version=ov,
description="Python bindings to the OMERO.blitz server",
long_description=read("README.rst"),
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'Intended Audience :: System Administrators',
'License :: OSI Approved :: GNU General Public License v2 '
'or later (GPLv2+)',
'Natural Language :: English',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3',
'Topic :: Software Development :: Libraries :: Python Modules',
], # Get strings from
# http://pypi.python.org/pypi?%3Aaction=list_classifiers
author="The Open Microscopy Team",
author_email="ome-devel@lists.openmicroscopy.org.uk",
url='https://github.com/ome/omero-py',
project_urls={
'Documentation':
'https://docs.openmicroscopy.org/omero/latest/developers/'
'Python.html',
'Bug tracker': 'https://github.com/ome/omero-py/issues',
'API': 'https://omero-py.readthedocs.io/',
},
package_dir={"": "target"},
packages=packages,
package_data={
'omero.gateway': ['pilfonts/*'],
'omero.gateway.scripts': ['imgs/*']},
py_modules=packageless,
entry_points={
'console_scripts': ['omero=omero.main:main'],
},
python_requires='>=3.8',
install_requires=[
'urllib3<2',
'appdirs',
'future',
'numpy<2',
'Pillow>=10.0.0',
'PyYAML',
'zeroc-ice>=3.6.5,<3.7',
'pywin32; platform_system=="Windows"',
'requests',
'portalocker'
],
tests_require=[
'pytest',
'pytest-mock',
],
cmdclass={
'devtarget': DevTargetCommand,
},
)