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Erosion and Accretion of carbonate blocks

Dependencies

The following R packages are required:

  • tidyverse
  • validate
  • skimr
  • styler
  • dagitty

Installation

  1. Start by cloning the repository to a directory of your choice
git clone git@github.com:open-AIMS/carbonate_blocks.git .
OR
git clone https://github.com/open-AIMS/carbonate_blocks.git .
  1. Establish a data/raw/ folder and place a copy of the raw data (as show below)
\
|- README.md
|- data
|  |- raw
|     |- Blocks_eReefs_silt_biota_erosion_metab_2024Oct.csv
|- R
|  |- 00_main.R
  1. Navigate to the R folder and run the 00_main.R script

Outputs

Early on, the scripts will expand on the directory structure to create the following:

\
|- README.md
|- data
|  |- raw
|  |  |- Blocks_eReefs_silt_biota_erosion_metab_2024Oct.csv
|  |- primary
|  |- processed
|  |- modelled
|- R
|  |- 00_main.R
|- outputs
|  |- figures
|  |- tables
|

Important global variables

  • DATA_PATH: path to root of data folder
  • RAW_DATA_PATH: path to location of raw data (data supplied by Katharina)
  • FIGURES_PATH: path to location of all output figures
  • TABLES_PATH: path to location of all output tables