project.yaml

version: '3.0'

expectations:

  population_size: 1000

actions:

  ## # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # 
  ## DO NOT EDIT project.yaml DIRECTLY 
  ## This file is created by create_project_actions.R 
  ## Edit and run create_project_actions.R to update the project.yaml 
  ## # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # 
  ## Generate vaccination eligibility information 

  vax_eligibility_inputs:
    run: r:latest analysis/dataset_definition/metadates.R
    outputs:
      highly_sensitive:
        study_dates_json: output/study_dates.json

  ## Generate dates for all cohorts 

  generate_dataset_index_dates:
    run: ehrql:v1 generate-dataset analysis/dataset_definition/dataset_definition_dates.py
      --output output/index_dates.csv.gz
    needs:
    - vax_eligibility_inputs
    outputs:
      highly_sensitive:
        dataset: output/index_dates.csv.gz

  ## Generate study population - prevax 

  generate_study_population_prevax:
    run: ehrql:v1 generate-dataset analysis/dataset_definition/dataset_definition_prevax.py
      --output output/input_prevax.csv.gz
    needs:
    - generate_dataset_index_dates
    outputs:
      highly_sensitive:
        cohort: output/input_prevax.csv.gz

  ## Generate study population - vax 

  generate_study_population_vax:
    run: ehrql:v1 generate-dataset analysis/dataset_definition/dataset_definition_vax.py
      --output output/input_vax.csv.gz
    needs:
    - generate_dataset_index_dates
    outputs:
      highly_sensitive:
        cohort: output/input_vax.csv.gz

  ## Generate study population - unvax 

  generate_study_population_unvax:
    run: ehrql:v1 generate-dataset analysis/dataset_definition/dataset_definition_unvax.py
      --output output/input_unvax.csv.gz
    needs:
    - generate_dataset_index_dates
    outputs:
      highly_sensitive:
        cohort: output/input_unvax.csv.gz