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api.py
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api.py
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#!/usr/bin/env python
# -*- coding: UTF-8 -*-
from __future__ import with_statement
import logging
logging.basicConfig(level=logging.INFO) # dev_appserver.py --log_level debug .
log = logging.getLogger(__name__)
import os
import os.path
import glob
import re
import threading
import parsers
import datetime, time
from google.appengine.ext import ndb
loader_instance = False
from testharness import *
import apirdflib
from sdoutil import sdo_send_mail
#from apirdflib import rdfGetTargets, rdfGetSources
from apimarkdown import Markdown
def getInstanceId(short=False):
ret = ""
if "INSTANCE_ID" in os.environ:
ret = os.environ["INSTANCE_ID"]
if short:
ret = ret[len(ret)-6:]
return ret
EXAMPLESTOREMODE = os.environ.get("EXAMPLESTOREMODE","INMEM")
schemasInitialized = False
extensionsLoaded = False
extensionLoadErrors = ""
#INTESTHARNESS used to flag we are in a test harness - not called by webApp so some things will work different!
#setInTestHarness(True) should be called from test suites.
log.info("IN TESTHARNESS %s" % getInTestHarness())
if not getInTestHarness():
from google.appengine.api import memcache
from sdocloudstore import SdoCloud
AllLayersList = []
def setAllLayersList(val):
global AllLayersList
AllLayersList = val
#Copy it into apirdflib
apirdflib.allLayersList = val
def getAllLayersList():
global AllLayersList
return AllLayersList
JSONLDCONTEXT = "jsonldcontext.json"
EVERYLAYER = "!EVERYLAYER!"
sitename = "schema.org"
sitemode = "mainsite" # whitespaced list for CSS tags,
# e.g. "mainsite testsite", "extensionsite" when off expected domains
DYNALOAD = True # permits read_schemas to be re-invoked live.
#JINJA_ENVIRONMENT = jinja2.Environment(
# loader=jinja2.FileSystemLoader(os.path.join(os.path.dirname(__file__), 'templates')),
# extensions=['jinja2.ext.autoescape'], autoescape=True)
PAGESTOREMODE = "CLOUDSTORE" #INMEM (In instance memory)
#NDBSHARED (NDB shared - accross instances)
#CLOUDSTORE - (Cloudstorage files)
if "PAGESTOREMODE" in os.environ:
PAGESTOREMODE = os.environ["PAGESTOREMODE"]
log.info("PAGESTOREMODE set to %s from .yaml file" % PAGESTOREMODE)
log.info("Initialised with PAGESTOREMODE set to %s" % PAGESTOREMODE)
debugging = False
def getMasterStore():
return apirdflib.STORE
def getQueryGraph():
return apirdflib.queryGraph()
# Core API: we have a single schema graph built from triples and units.
NodeIDMap = {}
ext_re = re.compile(r'([^\w,])+')
all_layers = {}
all_terms = {}
# Utility declaration of W3C Initial Context
# From http://www.w3.org/2011/rdfa-context/rdfa-1.1
# and http://www.w3.org/2013/json-ld-context/rdfa11
# Enables all these prefixes without explicit declaration when
# using schema.org's JSON-LD context file.
#
namespaces = """ "schema": "http://schema.org/",
"cat": "http://www.w3.org/ns/dcat#",
"cc": "http://creativecommons.org/ns#",
"cnt": "http://www.w3.org/2008/content#",
"ctag": "http://commontag.org/ns#",
"dc": "http://purl.org/dc/terms/",
"dcat": "http://www.w3.org/ns/dcat#",
"dcterms": "http://purl.org/dc/terms/",
"describedby": "http://www.w3.org/2007/05/powder-s#describedby",
"earl": "http://www.w3.org/ns/earl#",
"foaf": "http://xmlns.com/foaf/0.1/",
"gldp": "http://www.w3.org/ns/people#",
"gr": "http://purl.org/goodrelations/v1#",
"grddl": "http://www.w3.org/2003/g/data-view#",
"ht": "http://www.w3.org/2006/http#",
"ical": "http://www.w3.org/2002/12/cal/icaltzd#",
"license": "http://www.w3.org/1999/xhtml/vocab#license",
"ma": "http://www.w3.org/ns/ma-ont#",
"og": "http://ogp.me/ns#",
"org": "http://www.w3.org/ns/org#",
"org": "http://www.w3.org/ns/org#",
"owl": "http://www.w3.org/2002/07/owl#",
"prov": "http://www.w3.org/ns/prov#",
"ptr": "http://www.w3.org/2009/pointers#",
"qb": "http://purl.org/linked-data/cube#",
"rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
"rdfa": "http://www.w3.org/ns/rdfa#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#",
"rev": "http://purl.org/stuff/rev#",
"rif": "http://www.w3.org/2007/rif#",
"role": "http://www.w3.org/1999/xhtml/vocab#role",
"rr": "http://www.w3.org/ns/r2rml#",
"sd": "http://www.w3.org/ns/sparql-service-description#",
"sioc": "http://rdfs.org/sioc/ns#",
"skos": "http://www.w3.org/2004/02/skos/core#",
"skosxl": "http://www.w3.org/2008/05/skos-xl#",
"v": "http://rdf.data-vocabulary.org/#",
"vcard": "http://www.w3.org/2006/vcard/ns#",
"void": "http://rdfs.org/ns/void#",
"wdr": "http://www.w3.org/2007/05/powder#",
"wdrs": "http://www.w3.org/2007/05/powder-s#",
"xhv": "http://www.w3.org/1999/xhtml/vocab#",
"xml": "http://www.w3.org/XML/1998/namespace",
"xsd": "http://www.w3.org/2001/XMLSchema#",
"""
class DataCacheTool():
def __init__ (self):
self.tlocal = threading.local()
self.tlocal.CurrentDataCache = "core"
self.initialise()
def initialise(self):
self._DataCache = {}
self._DataCache[self.tlocal.CurrentDataCache] = {}
return
def getCache(self,cache=None):
if cache == None:
cache = self.getCurrent()
if cache in self._DataCache.keys():
return self._DataCache[cache]
else:
self._DataCache[cache] = {}
return self._DataCache[cache]
def get(self,key,cache=None):
return self.getCache(cache).get(key)
def remove(self,key,cache=None):
return self.getCache(cache).pop(key,None)
def put(self,key,val,cache=None):
self.getCache(cache)[key] = val
def setCurrent(self,current):
self.tlocal.CurrentDataCache = current
if(self._DataCache.get(current) == None):
self._DataCache[current] = {}
log.debug("[%s] Setting _CurrentDataCache: %s" % (getInstanceId(short=True),current))
def getCurrent(self):
return self.tlocal.CurrentDataCache
def keys(self):
return self._DataCache.keys()
class PageEntity(ndb.Model):
content = ndb.TextProperty()
class NDBPageStoreTool():
def __init__ (self):
self.tlocal = threading.local()
self.tlocal.CurrentStoreSet = "core"
def initialise(self):
import time
log.info("[%s]PageStore initialising Data Store" % (getInstanceId(short=True)))
loops = 0
ret = 0
while loops < 10:
keys = PageEntity.query().fetch(keys_only=True)
count = len(keys)
if count == 0:
break
log.info("[%s]PageStore deleting %s keys" % (getInstanceId(short=True), count))
ndb.delete_multi(keys,use_memcache=False,use_cache=False)
ret += count
loops += 1
time.sleep(0.01)
return {"PageStore":ret}
def getCurrent(self):
return self.tlocal.CurrentStoreSet
def setCurrent(self,current):
self.tlocal.CurrentStoreSet = current
log.debug("PageStore setting CurrentStoreSet: %s",current)
def put(self, key, val,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
#log.info("[%s]PageStore storing %s" % (getInstanceId(),fullKey))
ent = PageEntity(id = fullKey, content = val)
ent.put()
def get(self, key,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = PageEntity.get_by_id(fullKey)
if(ent):
#log.info("[%s]PageStore returning %s" % (os.environ["INSTANCE_ID"],fullKey))
return ent.content
else:
#log.info("PageStore '%s' not found" % fullKey)
return None
def remove(self, key,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = PageEntity.get_by_id(fullKey)
if(ent):
return ent.key.delete()
else:
#log.info("PageStore '%s' not found" % fullKey)
return None
class CloudPageStoreTool():
def __init__ (self):
self.init()
def init(self):
log.info("CloudPageStoreTool.init")
self.tlocal = threading.local()
self.tlocal.CurrentStoreSet = "core"
log.info("CloudPageStoreTool.CurrentStoreSet: %s" % self.tlocal.CurrentStoreSet)
def _getTypeFromKey(self,key):
name = key
typ = None
split = key.split(':')
if len(split) > 1:
name = split[1]
typ = split[0]
if typ[0] == '.':
typ = typ[1:]
#log.info("%s > %s %s" % (key,name,typ))
return name,typ
def initialise(self):
SdoCloud.cleanCache()
return {"CloudPageStore":SdoCloud.delete_files_in_bucket(skip=["/.status"])}
def getCurrent(self):
try:
if not self.tlocal.CurrentStoreSet:
self.tlocal.CurrentStoreSet = "core"
except Exception:
self.tlocal.CurrentStoreSet = "core"
ret = self.tlocal.CurrentStoreSet
return ret
def setCurrent(self,current):
self.tlocal.CurrentStoreSet = current
log.debug("CloudPageStore setting CurrentStoreSet: %s",current)
def put(self, key, val,cache=None,extrameta=None):
fname, ftype = self._getTypeFromKey(key)
if not ftype:
ftype = "html"
SdoCloud.writeFormattedFile(fname,ftype=ftype,content=val,extrameta=extrameta)
def get(self, key,cache=None):
fname, ftype = self._getTypeFromKey(key)
if not ftype:
ftype = "html"
return SdoCloud.readFormattedFile(fname,ftype=ftype)
def remove(self, key,cache=None):
SdoCloud.deleteFormattedFile(key)
class HeaderEntity(ndb.Model):
content = ndb.PickleProperty()
class HeaderStoreTool():
def __init__ (self):
self.tlocal = threading.local()
self.tlocal.CurrentStoreSet = "core"
def initialise(self):
import time
log.info("[%s]HeaderStore initialising Data Store" % (getInstanceId(short=True)))
loops = 0
ret = 0
while loops < 10:
keys = HeaderEntity.query().fetch(keys_only=True)
count = len(keys)
if count == 0:
break
log.info("[%s]HeaderStore deleting %s keys" % (getInstanceId(short=True), count))
ndb.delete_multi(keys,use_memcache=False,use_cache=False)
ret += count
loops += 1
time.sleep(0.01)
return {"HeaderStore":ret}
def getCurrent(self):
return self.tlocal.CurrentStoreSet
def setCurrent(self,current):
self.tlocal.CurrentStoreSet = current
log.debug("HeaderStore setting CurrentStoreSet: %s",current)
def put(self, key, val,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = HeaderEntity(id = fullKey, content = val)
ent.put()
# def putIfNewKey(self, key, val,cache=None):
#gets are lightweight puts are not
# if self.get(key,cache) == None:
# self.put(key,val,cache)
def get(self, key,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = HeaderEntity.get_by_id(fullKey)
if(ent):
return ent.content
else:
return None
def remove(self, key,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = HeaderEntity.get_by_id(fullKey)
if(ent):
return ent.key.delete()
else:
return None
class DataEntity(ndb.Model):
content = ndb.PickleProperty()
class DataStoreTool():
def __init__ (self):
self.tlocal = threading.local()
self.tlocal.CurrentStoreSet = "core"
def initialise(self):
import time
log.info("[%s]DataStore initialising Data Store" % (getInstanceId(short=True)))
loops = 0
ret = 0
while loops < 10:
keys = DataEntity.query().fetch(keys_only=True)
count = len(keys)
if count == 0:
break
log.info("[%s]DataStore deleting %s keys" % (getInstanceId(short=True), count))
ndb.delete_multi(keys,use_memcache=False,use_cache=False)
ret += count
loops += 1
time.sleep(0.01)
return {"DataStore":ret}
def getCurrent(self):
return self.tlocal.CurrentStoreSet
def setCurrent(self,current):
self.tlocal.CurrentStoreSet = current
log.debug("DataStore setting CurrentStoreSet: %s",current)
def put(self, key, val,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = DataEntity(id = fullKey, content = val)
ent.put()
def get(self, key,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = DataEntity.get_by_id(fullKey)
if(ent):
return ent.content
else:
return None
def remove(self, key,cache=None):
ca = self.getCurrent()
if cache != None:
ca = cache
fullKey = ca + ":" + key
ent = DataEntity.get_by_id(fullKey)
if(ent):
return ent.key.delete()
else:
return None
PageStore = None
HeaderStore = None
DataCache = None
#log.info("[%s] PageStore mode: %s" % (getInstanceId(short=True),PAGESTOREMODE))
def enablePageStore(mode):
global PageStore,HeaderStore,DataCache
log.info("enablePageStore(%s)" % mode)
if(mode == "NDBSHARED"):
log.info("[%s] Enabling NDB" % getInstanceId(short=True))
PageStore = NDBPageStoreTool()
log.info("[%s] Created PageStore" % getInstanceId(short=True))
HeaderStore = HeaderStoreTool()
log.info("[%s] Created HeaderStore" % getInstanceId(short=True))
DataCache = DataStoreTool()
log.info("[%s] Created DataStore" % getInstanceId(short=True))
elif(mode == "INMEM"):
log.info("[%s] Disabling NDB" % getInstanceId(short=True))
PageStore = DataCacheTool()
HeaderStore = DataCacheTool()
DataCache = DataCacheTool()
elif(mode == "CLOUDSTORE"):
log.info("[%s] Enabling CloudStore" % getInstanceId(short=True))
PageStore = CloudPageStoreTool()
log.info("[%s] Created PageStore" % getInstanceId(short=True))
HeaderStore = HeaderStoreTool()
log.info("[%s] Created HeaderStore" % getInstanceId(short=True))
DataCache = DataStoreTool()
log.info("[%s] Created DataStore" % getInstanceId(short=True))
else:
log.error("Invalid storage mode: %s" % mode)
if getInTestHarness(): #Override pagestore decision if in testharness
enablePageStore("INMEM")
else:
enablePageStore(PAGESTOREMODE)
def prepareCloudstoreDocs():
if getInTestHarness() or "localhost" in os.environ['SERVER_NAME']: #Force new version logic for local versions and tests
log.info("Skipping static docs copy for local/test instance")
return
log.info("Preparing Cloudstorage - copying static docs")
count = 0
for root, dirs, files in os.walk("docs"):
for f in files:
count += 1
fname = os.path.join(root, f)
try:
with open(fname, 'r') as f:
content = f.read()
SdoCloud.writeFormattedFile(fname,content=content, location="html", raw=True)
f.close()
except Exception as e:
log.info("ERROR reading: %s" % e)
pass
#sdo_send_mail(to="rjw@dataliberate.com",subject="[SCHEMAINFO] from 'api'", msg="prepareCloudstoreDocs: %s" % (count))
def cloudstoreStoreContent(fname, content, location, raw=False, private=False):
SdoCloud.writeFormattedFile(fname,content=content, ftype="", location=location, raw=raw, private=private)
def cloudstoreGetContent(fname, location, raw=False):
content = SdoCloud.readFormattedFile(fname, ftype="", location=location)
return content
class Unit ():
"""
Unit represents a node in our schema graph. IDs are local,
e.g. "Person" or use simple prefixes, e.g. rdfs:Class.
"""
def __init__ (self, id):
self.id = id
NodeIDMap[id] = self
self.arcsIn = []
self.arcsOut = []
self.examples = None
self.home = None
self.subtypes = None
self.sourced = False
self.category = " "
self.typeFlags = {}
def __str__(self):
return self.id
def GetImmediateSubtypes(self, layers='core'):
return GetImmediateSubtypes(self, layers=layers)
@staticmethod
def GetUnit (id, createp=False):
"""Return a Unit representing a node in the schema graph.
Argument:
createp -- should we create node if we don't find it? (default: False)
"""
ret = None
if (id in NodeIDMap):
return NodeIDMap[id]
ret = apirdflib.rdfGetTriples(id)
if (ret == None and createp != False):
return Unit(id)
return ret
@staticmethod
def GetUnitNoLoad(id, createp=False):
if (id in NodeIDMap):
return NodeIDMap[id]
if (createp != False):
return Unit(id)
return None
def typeOf(self, type, layers='core'):
"""Boolean, true if the unit has an rdf:type matching this type."""
types = GetTargets( Unit.GetUnit("rdf:type"), self, layers )
return (type in types)
def subClassOf(self, type, layers='core'):
"""Boolean, true if the unit has an rdfs:subClassOf matching this type, direct or implied (in specified layer(s))."""
if not type:
return False
if (self.id == type.id):
return True
parents = GetTargets( Unit.GetUnit("rdfs:subClassOf"), self, layers )
if type in parents:
return True
else:
for p in parents:
if p.subClassOf(type, layers):
return True
return False
def directInstanceOf(self, type, layers='core'):
"""Boolean, true if the unit has a direct typeOf (aka rdf:type) property matching this type, direct or implied (in specified layer(s))."""
mytypes = GetTargets( Unit.GetUnit("rdf:type"), self, layers )
if type in mytypes:
return True
return False # TODO: consider an API for implied types too?
def isClass(self, layers='core'):
"""Does this unit represent a class/type?"""
if self.typeFlags.has_key('c'):
return self.typeFlags['c']
isClass = self.typeOf(Unit.GetUnit("rdfs:Class"), layers=EVERYLAYER)
self.typeFlags['c'] = isClass
return isClass
def isAttribute(self, layers='core'):
"""Does this unit represent an attribute/property?"""
if self.typeFlags.has_key('p'):
return self.typeFlags['p']
isProp = self.typeOf(Unit.GetUnit("rdf:Property"), layers=EVERYLAYER)
self.typeFlags['p'] = isProp
return isProp
def isEnumeration(self, layers='core'):
"""Does this unit represent an enumerated type?"""
if self.typeFlags.has_key('e'):
return self.typeFlags['e']
isE = self.subClassOf(Unit.GetUnit("Enumeration"), layers=EVERYLAYER)
self.typeFlags['e'] = isE
return isE
def isEnumerationValue(self, layers='core'):
"""Does this unit represent a member of an enumerated type?"""
if self.typeFlags.has_key('ev'):
return self.typeFlags['ev']
types = GetTargets(Unit.GetUnit("rdf:type"), self , layers=EVERYLAYER)
#log.debug("isEnumerationValue() called on %s, found %s types. layers: %s" % (self.id, str( len( types ) ), layers ) )
found_enum = False
for t in types:
if t.subClassOf(Unit.GetUnit("Enumeration"), layers=EVERYLAYER):
found_enum = True
break
self.typeFlags['ev'] = found_enum
return found_enum
def isDataType(self, layers='core'):
"""
Does this unit represent a DataType type or sub-type?
DataType and its children do not descend from Thing, so we need to
treat it specially.
"""
if self.typeFlags.has_key('d'):
return self.typeFlags['d']
ret = False
if (self.directInstanceOf(Unit.GetUnit("DataType"), layers=layers) or
self.id == "DataType"):
ret = True
else:
subs = GetTargets(Unit.GetUnit("rdfs:subClassOf"), self, layers=layers)
for p in subs:
if p.isDataType(layers=layers):
ret = True
break
self.typeFlags['d'] = ret
return ret
@staticmethod
def storePrefix(prefix):
"""Stores the prefix declaration for a given class or property"""
# Currently defined just to let the tests pass
pass
# e.g. <http://schema.org/actors> <http://schema.org/supersededBy> <http://schema.org/actor> .
def superseded(self, layers='core'):
"""Has this property been superseded? (i.e. deprecated/archaic), in any of these layers."""
supersededBy_values = GetTargets( Unit.GetUnit("supersededBy"), self, layers )
return ( len(supersededBy_values) > 0)
def supersedes(self, layers='core'):
"""Returns a property (assume max 1) that is supersededBy this one, or nothing."""
olderterms = GetSources( Unit.GetUnit("supersededBy"), self, layers )
if len(olderterms) > 0:
return olderterms[0]
else:
return None
def supersedes_all(self, layers='core'):
"""Returns terms that is supersededBy by this later one, or nothing. (in this layer)"""
return(GetSources( Unit.GetUnit("supersededBy"), self, layers ))
# so we want sources of arcs pointing here with 'supersededBy'
# e.g. vendor supersededBy seller ; returns newer 'seller' for earlier 'vendor'.
def supersededBy(self, layers='core'):
"""Returns a property (assume max 1) that supersededs this one, or nothing."""
newerterms = GetTargets( Unit.GetUnit("supersededBy"), self, layers )
if len(newerterms)>0:
return newerterms.pop()
else:
return None
return ret
def category(self):
return self.category
def getHomeLayer(self,defaultToCore=False):
ret = self.home
if ret == None:
if defaultToCore:
ret = 'core'
else:
log.info("WARNING %s has no home extension defined!!" % self.id)
ret = ""
return ret
def superproperties(self, layers='core'):
"""Returns super-properties of this one."""
if not self.isAttribute(layers=layers):
logging.debug("Non-property %s won't have subproperties." % self.id)
return None
superprops = GetTargets(Unit.GetUnit("rdfs:subPropertyOf"),self, layers=layers )
return superprops
def subproperties(self, layers='core'):
"""Returns direct subproperties of this property."""
if not self.isAttribute(layers=layers):
logging.debug("Non-property %s won't have subproperties." % self.id)
return None
subprops = GetSources(Unit.GetUnit("rdfs:subPropertyOf"),self, layers=layers )
return subprops
def inverseproperty(self, layers="core"):
"""A property that is an inverseOf this one, e.g. alumni vs alumniOf."""
a = GetTargets(Unit.GetUnit("inverseOf"), self, layers=layers)
b = GetSources(Unit.GetUnit("inverseOf"), self, layers=layers)
if len(a)>0:
return a.pop()
else:
if len(b) > 0:
return b.pop()
else:
return None
for triple in self.arcsOut:
if (triple.target != None and triple.arc.id == "inverseOf"):
return triple.target
for triple in self.arcsIn:
if (triple.source != None and triple.arc.id == "inverseOf"):
return triple.source
return None
def UsageStr (self) :
str = GetUsage(self.id)
if (str == '1') :
return "Between 10 and 100 domains"
elif (str == '2'):
return "Between 100 and 1000 domains"
elif (str == '3'):
return "Between 1000 and 10,000 domains"
elif (str == '4'):
return "Between 10,000 and 50,000 domains"
elif (str == '5'):
return "Between 50,000 and 100,000 domains"
elif (str == '7'):
return "Between 100,000 and 250,000 domains"
elif (str == '8'):
return "Between 250,000 and 500,000 domains"
elif (str == '9'):
return "Between 500,000 and 1,000,000 domains"
elif (str == '10'):
return "Over 1,000,000 domains"
else:
return ""
# NOTE: each Triple is in exactly one layer, by default 'core'. When we
# read_schemas() from data/ext/{x}/*.rdfa each schema triple is given a
# layer named "x". Access to triples can default to layer="core" or take
# a custom layer or layers, e.g. layers="bib", or layers=["bib", "foo"].
# This is verbose but at least explicit. If we move towards making better
# use of external templates for site generation we could reorganize.
# For now e.g. 'grep GetSources api.py| grep -v layer' and
# 'grep GetTargets api.py| grep -v layer' etc. can check for non-layered usage.
#
# Units, on the other hand, are layer-independent. For now we have only a
# crude inLayer(layerlist, unit) API to check which layers mention a term.
class Triple ():
"""Triple represents an edge in the graph: source, arc and target/text."""
def __init__ (self, source, arc, target, text, layer='core'):
"""Triple constructor keeps state via source node's arcsOut."""
self.source = source
source.arcsOut.append(self)
self.arc = arc
self.layer = layer
self.id = self
if (target != None):
self.target = target
self.text = None
target.arcsIn.append(self)
elif (text != None):
self.text = text
self.target = None
def __str__ (self):
ret = ""
if self.source != None:
ret += "%s " % self.source
if self.target != None:
ret += "%s " % self.target
if self.arc != None:
ret += "%s " % self.arc
return ret
@staticmethod
def AddTriple(source, arc, target, layer='core'):
"""AddTriple stores a thing-valued new Triple within source Unit."""
if (source == None or arc == None or target == None):
log.info("Bailing")
return
else:
# for any term mentioned as subject or object, we register the layer
# TODO: make this into a function
x = all_terms.get(source.id) # subjects
if x is None:
x = []
if layer not in x:
x.append(layer)
all_terms[source.id]= x
x = all_terms.get(target.id) # objects
if x is None:
x = []
if layer not in x:
x.append(layer)
all_terms[target.id]= x
return Triple(source, arc, target, None, layer)
@staticmethod
def AddTripleText(source, arc, text, layer='core'):
"""AddTriple stores a string-valued new Triple within source Unit."""
if (source == None or arc == None or text == None):
return
else:
return Triple(source, arc, None, text, layer)
def GetTargets(arc, source, layers='core'):
"""All values for a specified arc on specified graph node (within any of the specified layers)."""
# log.debug("GetTargets checking in layer: %s for unit: %s arc: %s" % (layers, source.id, arc.id))
targets = {}
fred = False
try:
for triple in source.arcsOut:
if (triple.arc == arc):
if (triple.target != None and (layers == EVERYLAYER or triple.layer in layers)):
targets[triple.target] = 1
elif (triple.text != None and (layers == EVERYLAYER or triple.layer in layers)):
targets[triple.text] = 1
return targets.keys()
except Exception as e:
log.debug("GetTargets caught exception %s" % e)
return []
def GetSources(arc, target, layers='core'):
"""All source nodes for a specified arc pointing to a specified node (within any of the specified layers)."""
#log.debug("GetSources checking in layer: %s for unit: %s arc: %s" % (layers, target.id, arc.id))
if(target.sourced == False):
apirdflib.rdfGetSourceTriples(target)
sources = {}
for triple in target.arcsIn:
if (triple.arc == arc and (layers == EVERYLAYER or triple.layer in layers)):
sources[triple.source] = 1
return sources.keys()
def GetArcsIn(target, layers='core'):
"""All incoming arc types for this specified node (within any of the specified layers)."""
arcs = {}
for triple in target.arcsIn:
if (layers == EVERYLAYER or triple.layer in layers):
arcs[triple.arc] = 1
return arcs.keys()
def GetArcsOut(source, layers='core'):
"""All outgoing arc types for this specified node."""
arcs = {}
for triple in source.arcsOut:
if (layers == EVERYLAYER or triple.layer in layers):
arcs[triple.arc] = 1
return arcs.keys()
# Utility API
def GetComment(node, layers='core') :
"""Get the first rdfs:comment we find on this node (or "No comment"), within any of the specified layers."""
tx = GetComments(node, layers)
if len(tx) > 0:
return Markdown.parse(tx[0])
else:
return "No comment"
def GetComments(node, layers='core') :
"""Get the rdfs:comment(s) we find on this node within any of the specified layers."""
return GetTargets(Unit.GetUnit("rdfs:comment", True), node, layers=layers )
def GetsoftwareVersions(node, layers='core') :
"""Get the schema:softwareVersion(s) we find on this node (or [] ), within any of the specified layers."""
return GetTargets(Unit.GetUnit("softwareVersion", True), node, layers=layers )
def GetImmediateSubtypes(n, layers='core'):
"""Get this type's immediate subtypes, i.e. that are subClassOf this."""
if n==None:
return None
subs = GetSources( Unit.GetUnit("rdfs:subClassOf", True), n, layers=layers)
if (n.isDataType() or n.id == "DataType"):
subs += GetSources( Unit.GetUnit("rdf:type", True), n, layers=layers)
subs.sort(key=lambda x: x.id)
return subs
def GetImmediateSupertypes(n, layers='core'):
"""Get this type's immediate supertypes, i.e. that we are subClassOf."""
if n==None:
return None
sups = GetTargets( Unit.GetUnit("rdfs:subClassOf", True), n, layers=layers)
if (n.isDataType() or n.id == "DataType"):
sups += GetTargets( Unit.GetUnit("rdf:type", True), n, layers=layers)
sups.sort(key=lambda x: x.id)
return sups
Utc = "util_cache"
UtilCache = DataCacheTool()
def GetAllTypes(layers='core'):
global Utc
"""Return all types in the graph."""
KEY = "AllTypes:%s" % layers
if UtilCache.get(KEY+'x',Utc):
#logging.debug("DataCache HIT: %s" % KEY)
return UtilCache.get(KEY,Utc)
else:
#logging.debug("DataCache MISS: %s" % KEY)
mynode = Unit.GetUnit("Thing", True)
subbed = {}
todo = [mynode]
while todo:
current = todo.pop()
subs = GetImmediateSubtypes(current, EVERYLAYER)
if inLayer(layers,current):
subbed[current] = 1
for sc in subs:
if subbed.get(sc.id) == None:
todo.append(sc)
UtilCache.put(KEY,subbed.keys(),Utc)
return subbed.keys()
def GetAllDataTypes(layers='core'):
global Utc
"""Return all types in the graph."""
KEY = "AllDataTypes:%s" % layers
if UtilCache.get(KEY+'x',Utc):
#logging.debug("DataCache HIT: %s" % KEY)
return UtilCache.get(KEY,Utc)
else:
#logging.debug("DataCache MISS: %s" % KEY)
mynode = Unit.GetUnit("DataType", True)
subbed = {}
todo = [mynode]
while todo:
current = todo.pop()
subs = GetImmediateSubtypes(current, EVERYLAYER)
if inLayer(layers,current):
subbed[current] = 1
for sc in subs:
if subbed.get(sc.id) == None:
todo.append(sc)
UtilCache.put(KEY,subbed.keys(),Utc)
return subbed.keys()
def GetAllEnumerationValues(layers='core'):
global Utc
KEY = "AllEnums:%s" % layers
if UtilCache.get(KEY,Utc):
#logging.debug("DataCache HIT: %s" % KEY)
return UtilCache.get(KEY,Utc)
else:
#logging.debug("DataCache MISS: %s" % KEY)
mynode = Unit.GetUnit("Enumeration", True)
enums = {}
subbed = {}
todo = [mynode]
while todo:
current = todo.pop()
subs = GetImmediateSubtypes(current, EVERYLAYER)
subbed[current] = 1
for sc in subs:
vals = GetSources( Unit.GetUnit("rdf:type", True), sc, layers=EVERYLAYER)
for val in vals:
if inLayer(layers,val):
enums[val] = 1
if subbed.get(sc.id) == None:
todo.append(sc)
UtilCache.put(KEY,enums.keys(),Utc)
return enums.keys()
def GetAllProperties(layers='core'):
"""Return all properties in the graph."""
global Utc
KEY = "AllProperties:%s" % layers
if UtilCache.get(KEY,Utc):
#logging.debug("DataCache HIT: %s" % KEY)
return UtilCache.get(KEY,Utc)
else: