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setup.cfg
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setup.cfg
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[metadata]
name = cect
version = attr: cect.__version__
description = C. elegans Connectome Toolbox
long_description = file: README.md
long_description_content_type = text/markdown
url = https://github.com/openworm/ConnectomeToolbox
author = OpenWorm contributors
author_email = p.gleeson@gmail.com
maintainer = Padraig Gleeson
maintainer_email = p.gleeson@gmail.com
license = LGPLv3
license_files = LICENSE
classifiers =
Intended Audience :: Science/Research
License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Natural Language :: English
Operating System :: OS Independent
Topic :: Scientific/Engineering
Intended Audience :: Science/Research
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3 :: Only
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Topic :: Scientific/Engineering
Topic :: Software Development
Typing :: Typed
[options]
packages = find:
install_requires =
numpy
xlrd
openpyxl
wormneuroatlas
networkx
hiveplotlib
webcolors
python_requires = >=3.7
include_package_data = True
[options.extras_require]
test =
pytest
pytest-benchmark
pytest-mock
typing_extensions; python_version<'3.8'
docs =
pandas
tabulate
mkdocs
mkdocs-material
mkdocs-plotly-plugin
mkdocs-charts-plugin
mkdocs-autoapi[python] >= 0.3.1
plotly
kaleido < 0.4
dev =
flake8
cect[test]
pre-commit
tabulate
ruff
all =
cect[test]
cect[docs]
cect[dev]
[tool:pytest]
junit_family = xunit2
addopts = --benchmark-disable -Wd --strict-markers
xfail_strict = True
testpaths =
tests
required_plugins =
pytest-benchmark
[tool:isort]
profile = black
multi_line_output = 3
[flake8]
max-line-length = 80
max-complexity = 13
select = C, E, F, W, B, B9, T
ignore = E203, E231, E501, E722, W503, B950
per-file-ignores =
tests/*: T
examples/*: T
notebooks/*: T
docs/*: T
scripts/*: T
setup.py: T
setup_helpers.py: C901
[mypy]
warn_unused_configs = True
python_version = 3.6
files = src
disallow_any_generics = True
disallow_subclassing_any = True
disallow_untyped_calls = True
disallow_untyped_defs = True
disallow_incomplete_defs = True
check_untyped_defs = True
disallow_untyped_decorators = True
no_implicit_optional = True
warn_redundant_casts = True
warn_unused_ignores = True
warn_return_any = True
no_implicit_reexport = True
strict_equality = True
[check-manifest]
ignore =
.all-contributorsrc
.pre-commit-config.yaml
.readthedocs.yml
examples/**
notebooks/**
docs/**
scripts/**
dev-requirements.txt
CONTRIBUTING.md
*.html
tests/.pytest_cache/**