Fresh install unable to run gem because dynamic linker can't find llvm lib

[relistan]

I did a fresh install with:

macOS Sonoma 14.1

asdf install ruby truffleruby+graalvm-23.1.1

Running gem at any path outside of /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/ results in:

<internal:core> core/kernel.rb:234:in `gem_original_require': dlopen(/Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/psych.bundle, 0x0002): Library not loaded: @rpath/libgraalvm-llvm.1.dylib (RuntimeError)
  Referenced from: <D7C051E5-2D35-3DB9-91A3-6DA4AA679139> /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/psych.bundle
  Reason: tried: '/opt/homebrew/opt/libyaml/lib/libgraalvm-llvm.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/libyaml/lib/libgraalvm-llvm.1.dylib' (no such file), '/opt/homebrew/opt/libyaml/lib/libgraalvm-llvm.1.dylib' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/libyaml/lib/libgraalvm-llvm.1.dylib' (no such file)
	from <internal:/Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems/core_ext/kernel_require.rb>:85:in `require'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/psych.rb:13:in `<top (required)>'
	from <internal:core> core/kernel.rb:234:in `gem_original_require'
	from <internal:/Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems/core_ext/kernel_require.rb>:85:in `require'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems.rb:608:in `load_yaml'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems/config_file.rb:351:in `load_file'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems/config_file.rb:194:in `initialize'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems/gem_runner.rb:71:in `do_configuration'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/rubygems/gem_runner.rb:33:in `run'
	from /Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/bin/gem:29:in `<main>'

The output of otool -L shows:

/Users/my_user/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/psych.bundle:
	@rpath/libgraalvm-llvm.1.dylib (compatibility version 0.0.0, current version 1.0.0)
	/opt/homebrew/opt/libyaml/lib/libyaml-0.2.dylib (compatibility version 3.0.0, current version 3.9.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1336.61.1)```

Looking at the pysch.bundle it seems to have rpath pointed weirdly:

$ otool -l /Users/kmatthias/.asdf/installs/ruby/truffleruby+graalvm-23.1.1/lib/mri/psych.bundle | grep LC_RPATH -A2
          cmd LC_RPATH
      cmdsize 48
         path /opt/homebrew/opt/libyaml/lib (offset 12)

This means it is unable to find the @rpath/libgraalvm-llvm.1.dylib

I looked at post_install_hook.sh and saw that it will recompile psych under certain circumstances. I ran that part of the post install by hand with this script extract:

root=`pwd`
function recompile() {
  ext="$1"
  cd "src/main/c/$ext"
  truffleruby -w extconf.rb
  if [ -z "$CORES" ]; then
    CORES=$(getconf _NPROCESSORS_ONLN || echo 1)
  fi
  make "--jobs=$CORES"
  cp "$ext.$(truffleruby -rrbconfig -e "print RbConfig::CONFIG['DLEXT']")" "$root/lib/mri"
  cd "$root"
  echo
}

recompile psych

Which I ran from inside the base directory. This recompiled... but the result was the same.

[relistan]

If this should be opened on asdf-ruby, I'm happy to do that. It's not clear to me where to file this.

[eregon]

Could you try 23.1.2 which was just released and has a fix for this macOS-specific issue?
See https://github.com/oracle/truffleruby/releases/tag/graal-23.1.2
That looks like a duplicate of #3283 & #3294.
I'm pretty sure that will fix it so I'll already close, but please comment if that doesn't fix it.

[relistan]

Could you try 23.1.2 which was just released and has a fix for this macOS-specific issue? See https://github.com/oracle/truffleruby/releases/tag/graal-23.1.2 That looks like a duplicate of #3283 & #3294. I'm pretty sure that will fix it so I'll already close, but please comment if that doesn't fix it.

Ah, thank you. I had read both of those but they seemed slightly different. But now I see what you meant. I will give that a shot with the new release and only comment back if for some reason that does not fix it. Thanks!

[eregon]

and only comment back if for some reason that does not fix it.

Please let us know if it works too :)
Sorry, it was a bit of a "premature optimization" to already close this issue, my bad.

[relistan]

and only comment back if for some reason that does not fix it.

Please let us know if it works too :) Sorry, it was a bit of a "premature optimization" to already close this issue, my bad.

All good, I appreciate you replying to the issue.

Anyway, it works! Thanks. Appears that it was a more general Sonoma incompatibility fixed in that release.