{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"lociPARSE","owner":"Bhattacharya-Lab","isFork":false,"description":"locality-aware invariant Point Attention-based RNA ScorEr","allTopics":["deep-learning","rna-structure-prediction","rna-scoring","attention-network"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T23:18:09.830Z"}},{"type":"Public","name":"ProRNA3D-single","owner":"Bhattacharya-Lab","isFork":false,"description":"Single-sequence protein-RNA complex structure prediction with biological language models","allTopics":["deep-learning","language-model","protein-rna-interactions","biomolecular-structures"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-23T12:29:36.954Z"}},{"type":"Public","name":"RNAmark","owner":"Bhattacharya-Lab","isFork":false,"description":"The landscape of RNA 3D structure modeling with transformer networks","allTopics":["neural-network","transformer","rna-structure"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-21T21:17:10.779Z"}},{"type":"Public","name":"EquiPNAS","owner":"Bhattacharya-Lab","isFork":false,"description":"pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction","allTopics":["protein-rna-interactions","protein-dna-interactions","protein-language-model","graph-neural-netowrks"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":18,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-24T15:00:38.831Z"}},{"type":"Public","name":"CASP15","owner":"Bhattacharya-Lab","isFork":false,"description":"CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods","allTopics":["deep-learning","neural-network","transformers","protein-structure-prediction"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":6,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-13T14:21:10.603Z"}},{"type":"Public","name":"EquiPPIS","owner":"Bhattacharya-Lab","isFork":false,"description":"E(3) equivariant graph neural network for PPI site prediction","allTopics":["deep-learning","neural-network","equivariance","protein-protein-interactions"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-18T12:57:07.777Z"}},{"type":"Public","name":"PIQLE","owner":"Bhattacharya-Lab","isFork":false,"description":"Protein-protein interface quality estimation by deep graph learning","allTopics":["deep-learning","protein-protein-interaction","graph-neural-networks","protein-complex"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":4,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-08T19:46:41.582Z"}},{"type":"Public","name":"rrQNet","owner":"Bhattacharya-Lab","isFork":false,"description":"Protein contact map quality estimation by evolutionary reconciliation","allTopics":["deep-learning","quality-estimation","protein-structure-prediction","contact-maps"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-21T19:04:06.660Z"}},{"type":"Public","name":"SPECS","owner":"Bhattacharya-Lab","isFork":false,"description":"Superposition-based Protein Embedded CA SC score","allTopics":["protein-structure-prediction","protein-analysis","protein-model-accuracy","superposition","side-chain-orientation"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-11T16:04:49.467Z"}},{"type":"Public","name":"DisCovER","owner":"Bhattacharya-Lab","isFork":false,"description":"Distance- and orientation-based Covariational threadER","allTopics":["dynamic-programming","network-alignment","protein-homology-modeling","protein-structure-prediction","protein-threading"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-11T16:02:45.838Z"}},{"type":"Public","name":"DConStruct","owner":"Bhattacharya-Lab","isFork":false,"description":"Hybridized distance- and contact-based hierarchical protein folding","allTopics":["protein-folding","abinitio-simulations","protein-structure-prediction","protein-modeling"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-01T17:36:14.885Z"}},{"type":"Public","name":"PolyFold","owner":"Bhattacharya-Lab","isFork":false,"description":"An interactive visual simulator for distance-based protein folding","allTopics":["protein-dynamics","stochastic-optimization","protein-folding","protein-structure-prediction"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":0,"issueCount":0,"starsCount":24,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-01T17:35:06.265Z"}},{"type":"Public","name":"QDeep","owner":"Bhattacharya-Lab","isFork":false,"description":"Distance-based protein model quality estimation using deep ResNets","allTopics":["deep-learning","protein-structure-prediction","protein-scoring-functions","protein-model-quality-estimation"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":8,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-26T00:00:21.130Z"}}],"repositoryCount":13,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Bhattacharya-Lab repositories"}