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    30 repositories

    • xr-ds-seq-snakemake

      Public
      This repository contains xr-seq and damage-seq pipelines.
      Python
      •
      MIT License
      •0•4•0•0•Updated Dec 16, 2024Dec 16, 2024

    • uv-3d-ddr

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • PHACE

      Public
      Phylogeny-aware co-evolution
      R
      •
      MIT License
      •0•1•0•0•Updated Nov 6, 2024Nov 6, 2024

    • genome-integrity

      Public
      SCSS
      •
      Other
      •0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • WGSpipe

      Public
      Nextflow
      •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • fzd7_evolution_and_structure

      Public
      Python
      •0•0•0•0•Updated Aug 2, 2024Aug 2, 2024

    • CaSR

      Public
      Python
      •1•0•0•0•Updated Jul 28, 2024Jul 28, 2024

    • PHACTboost_manuscript

      Public
      R
      •0•3•0•0•Updated Jul 3, 2024Jul 3, 2024

    • PHACTboost

      Public
      R
      •1•5•0•0•Updated Jul 3, 2024Jul 3, 2024

    • Phyloseek

      Public
      Python
      •0•0•0•0•Updated May 2, 2024May 2, 2024

    • PHYLM

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • PHACT

      Public
      This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager
      R
      •5•9•0•0•Updated Mar 19, 2024Mar 19, 2024

    • XPA_evolution

      Public
      Python
      •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • atmm

      Public
      Python
      •0•2•0•0•Updated Jul 30, 2023Jul 30, 2023

    • missense_atlas

      Public
      Missense Atlas
      JavaScript
      •0•3•0•0•Updated Jun 19, 2023Jun 19, 2023

    • XR-DS-seq-Tutorial

      Public
      GitHub repository tutorial for XR-Seq and Damage-Seq methodologies, providing code examples, datasets, and documentation for studying DNA damage and repair processes.
      Python
      •
      MIT License
      •0•0•0•0•Updated May 24, 2023May 24, 2023

    • phylostat

      Public
      JavaScript
      •
      MIT License
      •0•0•0•9•Updated Mar 23, 2023Mar 23, 2023

    • boquila

      Public
      NGS read simulator to eliminate read nucleotide bias in sequence analysis.
      Rust
      •
      MIT License
      •0•6•0•0•Updated Mar 19, 2023Mar 19, 2023

    • 3D-UV

      Public
      Python
      •0•0•0•0•Updated Mar 3, 2023Mar 3, 2023

    • mdd-analysis

      Public
      HTML
      •0•0•0•0•Updated Dec 26, 2022Dec 26, 2022

    • MycoSmegmatis_TRCF

      Public
      The Mfd Protein is the Transcription-Repair Coupling Factor (TRCF) in Mycobacterium Smegmatis
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • replicationRepair

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2022Sep 17, 2022

    • GPCR-coupling-selectivity

      Public
      Python
      •0•0•0•0•Updated Mar 15, 2022Mar 15, 2022

    • 2022-01-15-SC-Sabanci-Turkey

      Public
      Data Carpentries Workshop
      HTML
      •
      Other
      •0•0•0•0•Updated Dec 17, 2021Dec 17, 2021

    • lemur-manu

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Jun 11, 2021Jun 11, 2021

    • SARS-CoV-2_Mutational_Profile

      Public
      HTML
      •0•1•0•0•Updated Mar 15, 2021Mar 15, 2021

    • hedera

      Public
      Rust
      •
      MIT License
      •0•0•4•0•Updated Mar 12, 2021Mar 12, 2021

    • globalNERepair

      Public
      Instead of pushing to globalRepair repository, the projects' scripts and pipelines are collected at this (globalNERepair) repository from now on.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 5, 2021Feb 5, 2021

    • lemur-manuscript-archive

      Public archive
      Manuscript of the mouse lemur repair study
      HTML
      •
      Other
      •0•0•0•0•Updated Apr 12, 2020Apr 12, 2020

    • lemurRepair

      Public
      Lemur Repair Study
      Go
      •0•0•0•0•Updated Apr 5, 2020Apr 5, 2020