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    22 repositories

    • OSA_Phenotyping_LLMs

      Public
      Developing analytic tools for phenotyping Obstructive Sleep Apnea along clinical text.
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Dec 20, 2023Dec 20, 2023

    • Geospatial_Analsyis

      Public
      HTML
      •0•0•0•0•Updated Aug 8, 2023Aug 8, 2023

    • HOOD_MIMIC4

      Public
      For summer 2023.
      MIT License
      •0•0•0•0•Updated May 16, 2023May 16, 2023

    • VA_facilities_analysis

      Public
      This repository contains info for distance/driving hours of county-level centroid points to nearby facilities and VA facilities waiting time
      Jupyter Notebook
      •0•0•0•0•Updated Nov 16, 2022Nov 16, 2022

    • spatial-prediction

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 15, 2022Sep 15, 2022

    • InteractivePoster

      Public
      Package with template interactive poster in Dash
      Python
      •
      MIT License
      •13•0•0•2•Updated Jun 22, 2022Jun 22, 2022

    • Altitude_vs_SuicideRate_in_VA

      Public
      association between altitude and suicide deaths, suicide attempts, and suicidal ideation among U.S. veterans at both the patient and geospatial level
      Python
      •0•0•0•0•Updated May 13, 2022May 13, 2022

    • Glossary

      Public
      This repository describes and defines methods used by our research group.
      0•0•0•0•Updated Apr 1, 2022Apr 1, 2022

    • NILE-HPC

      Public
      Python3 wrapper for NILE with MPI capability
      Hy
      •
      MIT License
      •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

    • unstructured-mimiciii-analysis

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Aug 7, 2020Aug 7, 2020

    • Template-Repo

      Public
      A template repo for organizing research projects, and guidelines for archiving and documenting.
      Jupyter Notebook
      •2•0•0•0•Updated Jun 2, 2020Jun 2, 2020

    • Protein-Structure-DL

      Public
      Classification and regression exploration using protein structures
      Python
      •3•5•2•0•Updated Apr 21, 2020Apr 21, 2020

    • misc

      Public
      0•0•0•0•Updated Aug 20, 2019Aug 20, 2019

    • MVP-NEWT

      Public
      A simple medical Notes application built using NEWT which we can access data through Cori.
      HTML
      •0•0•0•0•Updated May 7, 2019May 7, 2019

    • NOTE-Django

      Public
      Web tool implemented by Django
      HTML
      •0•0•0•0•Updated Apr 30, 2019Apr 30, 2019

    • Columbia-Suicide-Score

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2019Apr 3, 2019

    • Deep-Protein-Scoring

      Public
      LBNL SULI Spring 2018: Exploring methods of using CNNs for protein decoy scoring
      Python
      •
      MIT License
      •3•0•0•0•Updated Mar 23, 2019Mar 23, 2019

    • Suicide-NLP-Analysis

      Public
      Jupyter notebooks for the NLP suicide analysis
      Jupyter Notebook
      •0•0•0•0•Updated Sep 25, 2018Sep 25, 2018

    • Suicide-Prediction

      Public
      Uses NLP to predict suicide risk among hospital patients
      Jupyter Notebook
      •4•0•0•0•Updated Aug 24, 2018Aug 24, 2018

    • OpeNNdd

      Public
      Open neural network for drug discovery.
      Python
      •
      MIT License
      •7•0•0•0•Updated Aug 10, 2018Aug 10, 2018

    • Tools-for-Multiscale-Method

      Public
      Computational Tools for Multiscale Molecular Dynamics Simulation
      Jupyter Notebook
      •0•0•0•0•Updated Aug 9, 2018Aug 9, 2018

    • Protein-Structure-Exploration

      Public
      A collection of utilities to aid in the visual rendering of 3D protein structures and the transposition of those 3D structures into 2D images for use in training convolutional neural networks.
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 15, 2018Mar 15, 2018