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@IMTMarburg Bioinformatics at the Institute for molcular biology and tumor research, Marburg

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    27 repositories

    • flakes

      Public
      our collection of nix flakes
      Nix
      •0•1•0•0•Updated Nov 19, 2024Nov 19, 2024

    • TP53_SGE

      Public
      TP53 Saturation Genome Editing
      Jupyter Notebook
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • mbf_bam

      Public
      Rust
      •
      MIT License
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • mbf

      Public
      Tools for (genomic) bioinformatics
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • CoreFacilityGenomics_Archival_Tool

      Public
      Internal Website
      Svelte
      •
      MIT License
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • secronet

      Public
      Secronet Websystem
      Svelte
      •
      MIT License
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • mbf_gtf

      Public
      Rust
      •
      MIT License
      •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • pypipegraph2

      Public
      Sanely powerful python 'what do we need to do' graphs.
      Python
      •2•0•0•0•Updated May 6, 2024May 6, 2024

    • mbf_nested_intervals

      Public
      Rust
      •
      MIT License
      •0•0•0•0•Updated Apr 22, 2024Apr 22, 2024

    • mxp

      Public
      Support code to read qPCR machine file formats
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 14, 2023Sep 14, 2023

    • mbf_pandas_msgpack

      Public
      Pandas Msgpack
      Python
      •
      Other
      •21•1•0•0•Updated Aug 25, 2023Aug 25, 2023

    • mbf_anysnake

      Public
      Run any python version and any R version + dated CRAN&Bioconductor
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 27, 2022Jun 27, 2022

    • marburg_biobank

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Feb 23, 2022Feb 23, 2022

    • peakzilla

      Public
      Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: steinmann.jonas@gmail.com
      Python
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Dec 14, 2021Dec 14, 2021

    • mbf_genomics

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 9, 2021Dec 9, 2021

    • mbf_comparisons

      Public
      Comparisons for delayed dataframes
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 3, 2021Dec 3, 2021

    • mbf_align

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 20, 2021Jul 20, 2021

    • mbf_qualitycontrol

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • pypipegraph

      Public
      python make on steroids
      Python
      •
      Other
      •2•0•0•0•Updated Jul 12, 2021Jul 12, 2021

    • mbf_externals

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 25, 2021Mar 25, 2021

    • mbf_genomes

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 25, 2021Mar 25, 2021

    • mbf_r

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 25, 2021Mar 25, 2021

    • rnaseqmixture

      Public
      A method for adjusting or deconvoluting RNAseq of mixed tissues
      Python
      •0•2•0•0•Updated Mar 25, 2021Mar 25, 2021

    • mbf_heatmap

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 15, 2020Oct 15, 2020

    • mbf_sampledata

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 15, 2020Oct 15, 2020

    • mbf_fileformats

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 13, 2020Oct 13, 2020

    • marsnpdiff

      Public
      Fast differential SNP calling.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2017Sep 7, 2017