Maastricht University IDS

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197 repositories

dsri-documentation
Public
📖 Documentation for the Data Science Research Infrastructure at Maastricht University
kubernetes documentation data-science openshift data-science-research dsri
TypeScript
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MIT License
•9•22•6•8•Updated Nov 21, 2024Nov 21, 2024
cohort-explorer
Public
🫀 Webapp to explore cohorts metadata for the iCARE4CVD project
cohort-analysis cohort-studies clean-room sensible-data
Python
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MIT License
•4•5•0•0•Updated Nov 6, 2024Nov 6, 2024
code-server
Public
🧑‍💻 VisualStudio Code server Docker image
docker visual-studio-code
Dockerfile
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MIT License
•1•6•0•0•Updated Nov 6, 2024Nov 6, 2024
DecentralizedHealthcareBackend
Public
Jupyter Notebook
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Other
•2•1•15•0•Updated Oct 29, 2024Oct 29, 2024
RDFCraft
Public
TypeScript
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MIT License
•0•0•0•0•Updated Oct 25, 2024Oct 25, 2024
jupyterlab
Public
🪐 JupyterLab + VisualStudio Code workspaces for data science and knowledge graphs
kubernetes openshift vscode jupyter-notebook visual-studio-code jupyterhub cloud-computing jupyterlab dsri jupyter
Dockerfile
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MIT License
•22•40•1•0•Updated Oct 16, 2024Oct 16, 2024
translator-openpredict
Public
🔮🐍 A package to help serve predictions of biomedical concepts associations as Translator Reasoner API
openapi predict biomedical-concepts-associations translator-api trapi
Jupyter Notebook
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MIT License
•6•12•11•5•Updated Oct 15, 2024Oct 15, 2024
ubuntu
Public
🐧 Ubuntu Docker image
Dockerfile
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MIT License
•2•0•0•0•Updated Oct 14, 2024Oct 14, 2024
knowledge-collaboratory
Public
🔬 Website to help browse and publish Nanopublications
rdf text-annotation nanopublications biolink-model
TypeScript
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MIT License
•6•6•5•0•Updated Oct 10, 2024Oct 10, 2024
clean-technologies-nlp
Public
🌱 A qualitative and computational study using NLP on H2020 projects in the context of climate change
nlp text-classification climate-change policy-analysis
Jupyter Notebook
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GNU General Public License v3.0
•1•6•0•0•Updated Sep 20, 2024Sep 20, 2024
RAG_LLM
Public
This repository is to collect state of the art models, code, publications related to RAG-LLM models. The resources can be related to prompt engineering, RAG methods, evaluation methods and benchmarks, and more.
MIT License
•1•0•0•0•Updated Sep 17, 2024Sep 17, 2024
d2s-core
Public
🥝 Core repository with Docker, CWL, Argo scripts for the d2s tool
Common Workflow Language
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MIT License
•1•4•2•1•Updated Sep 3, 2024Sep 3, 2024
d2s-project-template
Public template
📋 Template to build CWL workflows to convert data to a RDF Knowledge Graph and deploy services.
sparql knowledge-graph rdf cwl-workflows
Jupyter Notebook
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MIT License
•0•5•8•1•Updated Sep 3, 2024Sep 3, 2024
d2s-transform-biolink
Public
CWL workflows to build the NCATS Translator Red KG, complying with the BioLink model.
Jupyter Notebook
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MIT License
•0•0•0•1•Updated Sep 3, 2024Sep 3, 2024
trapi-predict-kit
Public
🧰 A package to help create and deploy Translator Reasoner APIs (TRAPI) from any prediction model exposed as a regular python function.
openapi prediction-model translator-api trapi
Python
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MIT License
•2•1•1•0•Updated Aug 27, 2024Aug 27, 2024
docona
Public
DoConA (Document Content and Citation Analysis Pipeline) is an open source, configurable and extensible Python tool to analyse the level of agreement between the citation network of a set of textual documents and the textual similarity of these documents.
text-similarity word-embeddings citation-network citation-analysis
Python
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GNU Affero General Public License v3.0
•2•2•0•1•Updated Aug 20, 2024Aug 20, 2024
cookiecutter-trapi-predict-kit
Public
🍪🔮 A cookiecutter template to bootstrap machine learning prediction experiments, and integrate the predictions to a Translator Reasoner API
Python
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MIT License
•0•0•0•0•Updated Jul 25, 2024Jul 25, 2024
kg-metadata
Public
A SHACL metadata specification for knowledge graphs
metadata rdf shape knowledge-graph kg shacl
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jun 28, 2024Jun 28, 2024
FedQuery2024
Public
MIT License
•0•2•1•0•Updated Jun 27, 2024Jun 27, 2024
GNNDRKG
Public
Jupyter Notebook
•0•0•0•0•Updated Jun 18, 2024Jun 18, 2024
OptimAL
Public
Jupyter Notebook
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GNU General Public License v3.0
•1•6•0•3•Updated Jun 17, 2024Jun 17, 2024
rstudio
Public
📈 RStudio with Shiny server Docker image
rstudio shiny-apps docker shiny
Dockerfile
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MIT License
•3•1•0•0•Updated Jun 10, 2024Jun 10, 2024
predict-drug-target
Public
Using ESM2 protein embeddings and MolecularTransformer drug embeddings to train a linear classifier to predict potential drug-targets interactions
drug-target-interactions
Python
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MIT License
•2•8•2•0•Updated Apr 15, 2024Apr 15, 2024
semanticscience
Public
The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.
owl science-fair ontology
HTML
•12•61•2•0•Updated Apr 10, 2024Apr 10, 2024
crowdED
Public
🤖 Guideline for designing optimal crowdsourcing experiments
python shiny optimization crowdsourcing
Python
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MIT License
•5•5•0•0•Updated Apr 5, 2024Apr 5, 2024
UM_KEN4256_KnowledgeGraphs
Public
Resources for the KG course at IDS, Maastricht University
course knowledge-graph
Jupyter Notebook
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MIT License
•9•10•0•0•Updated Mar 26, 2024Mar 26, 2024
global-studies
Public
Materials for Global Studies Bachelor Program
Jupyter Notebook
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MIT License
•2•0•0•0•Updated Mar 17, 2024Mar 17, 2024
cookiecutter-python-package
Public
🍪🐍 A cookiecutter package to bootstrap python packages
Python
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MIT License
•0•6•0•0•Updated Mar 15, 2024Mar 15, 2024
CVDPrediction
Public
This repository is created for sharing the code and knowledge in building CVD (Cardiovascular Disease) risk prediction for CML (Chronic myelogenous leukemia) patients, requesting and using MIMIC data, and building a digital consent tool based on our previous work - Citizen-centric personal data platform (TIDAL).
HTML
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MIT License
•1•0•0•0•Updated Mar 13, 2024Mar 13, 2024
LUCE
Public
🧊 LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance.
blockchain consent-management
Jupyter Notebook
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Other
•1•1•1•0•Updated Feb 26, 2024Feb 26, 2024