{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"GeneSetCluster","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"a tool for summarizing and integrating gene-set analysis results","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":2,"issueCount":0,"starsCount":16,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T09:00:43.889Z"}},{"type":"Public","name":"LLM_assistant_mini-review","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-22T14:06:01.274Z"}},{"type":"Public","name":"scbert-reusability","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"Reusability report of scBERT","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":12,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-14T06:21:12.271Z"}},{"type":"Public","name":"GeneSetCluster2.0","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-18T11:00:07.338Z"}},{"type":"Public","name":"TransformersInGenomicsPapers","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that demonstrate the application of transformer-based models in genomics, providing users with a valuable resource to navigate this rapidly evolving field.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-17T11:19:56.345Z"}},{"type":"Public","name":"A-Primer-on-Transformers-in-Single-Cell-Genomics","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-14T19:00:44.481Z"}},{"type":"Public","name":"ClustAll","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-31T13:45:09.015Z"}},{"type":"Public","name":"DockerSeminar","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-12T06:34:25.831Z"}},{"type":"Public","name":"GSE198256_erxercise","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T04:44:17.728Z"}},{"type":"Public","name":"jesteg.github.io","owner":"TranslationalBioinformaticsUnit","isFork":true,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-10T11:10:43.297Z"}},{"type":"Public","name":"ClustALL_AD","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"ClustALL: A robust clustering strategy for stratification of patients with acutely decompensated cirrhosis.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-17T14:01:54.025Z"}},{"type":"Public","name":"bcell","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"Gene Regulatory Network of early B cell differentiation in Humans","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-04T14:29:19.061Z"}},{"type":"Public","name":"X-PAND","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"X-PAND seeks to enable the “big leap” in correcting defective genes or instructing novel therapeutic functions into hematopoietic stem cells (HSC) by precise genome editing.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-07T11:01:37.139Z"}},{"type":"Public","name":"BMN_characterization","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-05T08:17:12.729Z"}},{"type":"Public","name":"LIBRA","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"Machine Translation between paired Single Cell Multi Omics Data","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-17T13:27:18.016Z"}},{"type":"Public","name":"Multiple_MM","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-25T10:00:54.937Z"}},{"type":"Public","name":"FANCONI","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-24T16:10:46.275Z"}},{"type":"Public","name":"SC_multiom","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-24T15:07:51.165Z"}},{"type":"Public","name":"GenomeBrowser","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-18T11:55:33.965Z"}},{"type":"Public","name":"RNASEQ-Pipeline","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"Description of the different step in Pipeline RNAseq Single End. From fastq to count tables.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-03T08:24:08.281Z"}},{"type":"Public","name":"rnaSeqBulkSnake","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"bulk RNA-seq processing pipeline using DESeq2, edgeR, Voom, implemented with snakemake","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-09-10T07:23:49.445Z"}},{"type":"Public","name":"RNASEQ-Pair-end-Pipeline","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"Description of the different step in Pipeline RNAseq Pair End. From fastq to count tables. Then normalize and obtain the genes highly differentiated.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-08-21T11:42:37.901Z"}},{"type":"Public","name":"excelerate-scRNAseq","owner":"TranslationalBioinformaticsUnit","isFork":true,"description":"Single RNA-seq data analysis with R (Finland, May, 2019)","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":107,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-07-09T07:47:06.859Z"}},{"type":"Public","name":"SnapATAC","owner":"TranslationalBioinformaticsUnit","isFork":true,"description":"Single Nucleus Analysis Package for ATAC-seq","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":125,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-04-19T22:41:14.080Z"}},{"type":"Public","name":"singlecelldb","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"An actionable database of publicly available single-cell RNA-seq data","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":41,"forksCount":9,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-04-13T18:53:23.538Z"}},{"type":"Public","name":"singlecelldb-sample-app","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"Sample Django app for SingleCell DB project","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-02-10T14:26:19.945Z"}},{"type":"Public","name":"SimulatedData","owner":"TranslationalBioinformaticsUnit","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-12-10T08:18:54.374Z"}},{"type":"Public","name":"moses","owner":"TranslationalBioinformaticsUnit","isFork":true,"description":"Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":241,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-12-04T22:33:07.760Z"}},{"type":"Public","name":"methylation-recipes","owner":"TranslationalBioinformaticsUnit","isFork":true,"description":"Scripts related to 450k and EPIC data analysis","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-11-28T09:53:52.356Z"}},{"type":"Public","name":"sc-rna-seq-pipeline","owner":"TranslationalBioinformaticsUnit","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":10,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-08-30T23:44:39.978Z"}}],"repositoryCount":33,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"TranslationalBioinformaticsUnit repositories"}