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    • Images for the UCL-CI cBioportal instance
      Roff
      0000Updated May 1, 2024May 1, 2024
    • Compilation of resources to learn NGS data analysis
      0200Updated Jan 26, 2024Jan 26, 2024
    • Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
      Nextflow
      MIT License
      417000Updated Jan 18, 2024Jan 18, 2024
    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
      HTML
      MIT License
      709100Updated Jan 18, 2024Jan 18, 2024
    • chipseq

      Public
      Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
      R
      MIT License
      150000Updated Jan 18, 2024Jan 18, 2024
    • Module files for BLIC's software on UCL Myriad HPC
      Tcl
      MIT License
      0100Updated Feb 15, 2023Feb 15, 2023
    • Set of build scripts to install BLIC's software on UCL Myriad HPC
      C++
      MIT License
      0000Updated Feb 19, 2021Feb 19, 2021
    • nf-co.re

      Public
      Code and files for the main nf-core website >>>
      PHP
      MIT License
      195000Updated Mar 10, 2020Mar 10, 2020
    • Set of build scripts to install BLIC's software on UCL Legion HPC
      C++
      MIT License
      0000Updated Jan 21, 2020Jan 21, 2020
    • Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
      Nextflow
      MIT License
      0000Updated Nov 19, 2019Nov 19, 2019
    • Module files for BLIC's software on UCL Legion HPC
      Tcl
      MIT License
      0000Updated Oct 15, 2019Oct 15, 2019
    • MuPeXI

      Public
      MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
      Python
      Other
      28000Updated Sep 12, 2019Sep 12, 2019
    • nf-ginkgo

      Public
      NextFlow pipeline for running Ginkgo
      Nextflow
      MIT License
      0200Updated Aug 24, 2019Aug 24, 2019
    • ginkgo

      Public
      Cloud-based single-cell copy-number variation analysis tool
      PHP
      BSD 2-Clause "Simplified" License
      28000Updated Aug 3, 2019Aug 3, 2019
    • tcga-ee

      Public
      TCGA Expression Explorer (shiny app)
      R
      MIT License
      1300Updated Dec 4, 2018Dec 4, 2018
    • Repository to store standalone scripts that do not belong to any bigger package or repository
      Python
      MIT License
      23000Updated Nov 20, 2018Nov 20, 2018
    • Software to parse and analyse deletions (and insertions) from a CRISPR resequencing experiment
      Perl
      MIT License
      0100Updated Nov 15, 2018Nov 15, 2018
    • methylseq

      Public
      Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
      Python
      MIT License
      145000Updated Nov 14, 2018Nov 14, 2018
    • General scripts which make life easier when working on the Legion cluster at UCL
      Perl
      0100Updated Apr 19, 2018Apr 19, 2018
    • A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
      Perl
      GNU General Public License v3.0
      27000Updated Oct 6, 2016Oct 6, 2016
    • EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      HTML
      28000Updated Aug 1, 2016Aug 1, 2016
    • FORGE2

      Public
      Perl
      1000Updated Mar 17, 2016Mar 17, 2016