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    16 repositories

    • term-builder

      Public
      Python
      •2•1•0•2•Updated Oct 18, 2023Oct 18, 2023

    • Foundry-ES

      Public
      Biocaddie Data Processing Pipeline. A data ingestion pipeline that collects and transforms original metadata information to a unified metadata model, called DatA Tag Suite (DATS).
      javapipelinedatsmongodbactivemqingestion
      Java
      •
      Other
      •3•8•0•0•Updated Feb 8, 2019Feb 8, 2019

    • WG3-MetadataSpecifications

      Public
      WG3 Metadata Specification
      schema-orgjson-lddata-discoveryjson-schemasdata-modelingdats-model
      Python
      •13•28•11•0•Updated Nov 5, 2018Nov 5, 2018

    • foundry-nlp-enhancer

      Public
      NLP enhancer plugin for Foundry-ES pipeline management system. The service that enhances elasticsearch functionality with NLP elements.
      ingestionnlp-enhancer
      Java
      •1•1•0•0•Updated Sep 26, 2018Sep 26, 2018

    • NLP-Server

      Public
      NLP-Server for bioCADDIE ingestion process. The NLP processing software that enhances the current elasticsearch data after ingestion.
      Java
      •1•1•0•0•Updated Sep 24, 2018Sep 24, 2018

    • metadata-transformations

      Public
      Repository for bioCADDIE metadata curation of repository configurations and metadata transformations
      1•1•0•0•Updated May 21, 2018May 21, 2018

    • isee-delve

      Public
      Pilot Project 2.2 - Intelligent Search expansion and Visualization of Datasets (iSee-DELVE)
      JavaScript
      •1•3•0•1•Updated May 21, 2018May 21, 2018

    • BioCaddie-core-UI

      Public
      The main web client and user interface for the total environment, that has access to all the services and maintains personalization with the user login functionality.
      javascriptmysqlphp
      PHP
      •0•4•0•1•Updated Apr 24, 2018Apr 24, 2018

    • DATS

      Public
      Repository for dereferenceable DatA Tag Suite (DATS) JSON schemas and context files
      Python
      •
      Other
      •0•4•0•0•Updated Feb 8, 2018Feb 8, 2018

    • elasticsearch-queryexpansion-plugin

      Public
      A simple ElasticSearch plugin wrapping around the search endpoint to provide Rocchio query expansion
      Java
      •
      MIT License
      •7•16•1•0•Updated Aug 5, 2017Aug 5, 2017

    • biocaddie-priors

      Public
      Enables ElasticSearch scoring with two types of document priors.
      Java
      •
      MIT License
      •1•0•0•0•Updated Aug 2, 2017Aug 2, 2017

    • uiuc-biocaddie-pilot

      Public
      BioCADDIE challenge
      Shell
      •
      MIT License
      •4•8•0•1•Updated Aug 1, 2017Aug 1, 2017

    • prototype_issues

      Public
      Used to report and track bioCADDIE prototype issues
      5•3•225•0•Updated Jan 17, 2017Jan 17, 2017

    • DataRank

      Public
      DataRank algorithm based on active learning
      MATLAB
      •1•5•0•0•Updated Sep 17, 2015Sep 17, 2015

    • Pilot-Project

      Public
      PHP
      •0•1•0•0•Updated Sep 17, 2015Sep 17, 2015

    • ES-Index

      Public
      Repository for collecting issues on the DDI ElasticSearch Index.
      0•2•5•0•Updated Sep 3, 2015Sep 3, 2015