Team MIRA - BioMedIA

All

25 repositories

shift_identification
Public
Code for 'Automatic dataset shift identification to support root cause analysis of AI performance drift'
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Nov 25, 2024Nov 25, 2024
mammo-artifacts
Public
Code for "Radio-opaque artefacts in digital mammography: Automatic detection and analysis of downstream effects" paper
Python
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MIT License
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
attribute-amplification
Public
Official repository for the MICCAI 2024 paper 'Mitigating attribute amplification in counterfactual image generation'
Python
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MIT License
•0•1•0•0•Updated Sep 30, 2024Sep 30, 2024
counterfactual-contrastive
Public
Code for the paper "Counterfactual contrastive learning: robust representations via causal image synthesis"
Python
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MIT License
•2•13•0•0•Updated Sep 20, 2024Sep 20, 2024
causal-gen
Public
(ICML 2023) High Fidelity Image Counterfactuals with Probabilistic Causal Models
python machine-learning computer-vision neural-network pytorch uncertainty medical-imaging generative-model causality counterfactual
Python
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MIT License
•7•55•2•0•Updated Jun 13, 2024Jun 13, 2024
demystifying-diffusion
Public
variational-inference generative-models diffusion-models
TeX
•3•19•1•0•Updated Jan 15, 2024Jan 15, 2024
medmesh
Public
Code repository for the paper 'A comparative study of graph neural networks for shape classification in neuroimaging'
Jupyter Notebook
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Apache License 2.0
•1•6•0•0•Updated Nov 11, 2023Nov 11, 2023
upa
Public
Unsupervised prediction alignment for automatic correction of acquisition shift in image classification
Jupyter Notebook
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MIT License
•0•5•0•0•Updated Oct 24, 2023Oct 24, 2023
subgroup-separability
Public
[MICCAI 2023] "The Role of Subgroup Separability in Group-Fair Medical Image Classification"
Jupyter Notebook
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MIT License
•2•7•0•0•Updated Oct 20, 2023Oct 20, 2023
atlas-istn
Public
Code release for Atlas-ISTN
Python
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Apache License 2.0
•2•6•0•0•Updated Oct 20, 2023Oct 20, 2023
cxr-foundation-bias
Public
Official repository for 'Risk of Bias in Chest Radiography Deep Learning Foundation Models'
Jupyter Notebook
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Apache License 2.0
•3•10•1•0•Updated Sep 27, 2023Sep 27, 2023
deepscm
Public
Repository for Deep Structural Causal Models for Tractable Counterfactual Inference
deep-learning causal-inference normalizing-flows variational-autoencoders counterfactuals
Jupyter Notebook
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MIT License
•53•271•7•2•Updated Jul 6, 2023Jul 6, 2023
blast-ct
Public
Brain Lesion Analysis and Segmentation Tool for Computed Tomography
Python
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Apache License 2.0
•30•62•0•0•Updated Apr 21, 2023Apr 21, 2023
masf
Public
Domain Generalization via Model-Agnostic Learning of Semantic Features
Python
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Apache License 2.0
•18•146•3•2•Updated Mar 24, 2023Mar 24, 2023
istn
Public
Image-and-Spatial Transformer Networks
deep-learning medical-imaging image-registration spatial-transformer-networks
Python
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Apache License 2.0
•26•108•1•4•Updated Feb 15, 2023Feb 15, 2023
chexploration
Public
Official repository for 'Algorithmic encoding of protected characteristics in chest X-ray disease detection models'
Jupyter Notebook
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Apache License 2.0
•3•24•0•0•Updated Feb 15, 2023Feb 15, 2023
sos-vae
Public
Official Code for "Structured Uncertainty in the Observation Space of Variational Autoencoders"
uncertainty generative-model vae observation-space
Python
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Apache License 2.0
•0•4•0•0•Updated Oct 28, 2022Oct 28, 2022
counterfactual_axiomatic_soundness
Public
Python
•0•1•0•0•Updated Jul 21, 2022Jul 21, 2022
brain-age-cnn
Public
0•1•0•0•Updated Jul 26, 2021Jul 26, 2021
atmil
Public
0•3•0•0•Updated Jul 9, 2021Jul 9, 2021
oak2
Public
Random forests for 2D and 3D image analysis
machine-learning medical-imaging random-forests
C++
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Apache License 2.0
•1•1•0•0•Updated Aug 28, 2020Aug 28, 2020
dixonfix
Public
Tool for correcting fat-water swaps in Dixon MRI
C++
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Apache License 2.0
•1•4•1•0•Updated Aug 28, 2020Aug 28, 2020
drop2
Public
drop2 - intensity-based image registration
C++
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Other
•3•36•0•0•Updated Aug 28, 2020Aug 28, 2020
stitching
Public
Stitching tool for composing whole-body scans from multiple stations
medical-imaging
C++
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Apache License 2.0
•1•4•0•0•Updated Aug 28, 2020Aug 28, 2020
stochastic_segmentation_networks
Public
Stochastic Segmentation Networks
Python
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MIT License
•10•65•0•0•Updated Jun 26, 2020Jun 26, 2020