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@canlab Cognitive and Affective Neuroscience Laboratory

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    64 repositories

    • CanlabCore

      Public
      Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
      machine-learningneuroscienceconnectivityfmrimediationmeta-analysismatlabtoolboxescanlab
      MATLAB
      •
      Other
      •80•149•31•3•Updated Oct 2, 2024Oct 2, 2024

    • WASABI_public

      Public
      Public repository for the Warmth, Anticipation, Sensation, Aversion, and Body-part Imaging Study (WASABI)
      Python
      •
      MIT License
      •1•2•0•0•Updated Sep 26, 2024Sep 26, 2024

    • CANlab_help_examples

      Public
      How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.
      statisticsneuroimagingfmri
      HTML
      •
      GNU General Public License v2.0
      •10•26•2•0•Updated Sep 23, 2024Sep 23, 2024

    • FMRI_simulations

      Public
      HTML
      •5•9•0•0•Updated Sep 12, 2024Sep 12, 2024

    • canlab.github.io

      Public
      HTML
      •
      MIT License
      •0•2•0•7•Updated Sep 6, 2024Sep 6, 2024

    • Neuroimaging_Pattern_Masks

      Public
      Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.
      HTML
      •
      GNU General Public License v3.0
      •45•105•3•0•Updated Aug 26, 2024Aug 26, 2024

    • ooFmriDataObjML

      Public
      Object oriented ML framework for fmri_data objects
      MATLAB
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Aug 23, 2024Aug 23, 2024

    • canlab_single_trials

      Public
      A repository and data interface for MVPA education and model/algorithm development
      MATLAB
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated May 21, 2024May 21, 2024

    • cognitive_regulation_physiology

      Public
      Data and scripts for Matthewson, Woo, & Wager (in prep)
      HTML
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated May 17, 2024May 17, 2024

    • MediationToolbox

      Public
      Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
      HTML
      •29•79•23•0•Updated Mar 14, 2024Mar 14, 2024

    • Canlab_MKDA_MetaAnalysis

      Public
      Coordinate-based meta-analysis for neuroimaging using Multilevel Kernel Density Analysis and various other statistical tools (chi-square, clustering, correspondence analysis, parcellation)
      MATLAB
      •
      GNU General Public License v2.0
      •9•20•2•0•Updated Jan 25, 2024Jan 25, 2024

    • stimMAP_2022_public

      Public
      MATLAB
      •1•0•0•0•Updated Dec 8, 2023Dec 8, 2023

    • CanlabScripts

      Public
      A compilation of useful scripts commonly used in canlab
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•5•0•0•Updated Dec 4, 2023Dec 4, 2023

    • 2022_Graul_intracranial_affect

      Public
      Scripts for iEEG preprocessing, data cleaning, running tasks, and analysis
      HTML
      •1•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • 2021_Ceko_MPA2_Aversive

      Public
      MATLAB
      •1•3•0•0•Updated Aug 2, 2023Aug 2, 2023

    • Paradigms_Public

      Public
      Publicly available canlab experimental paradigms
      JavaScript
      •5•5•0•0•Updated Jun 16, 2023Jun 16, 2023

    • spacetop-prep

      Public
      code for transferring data and preprocessing
      Jupyter Notebook
      •
      MIT License
      •3•0•0•0•Updated May 17, 2023May 17, 2023

    • MJOLNIR_public

      Public
      Moral Judgments Online: Learning Noceboes for Infectious Risk - An mTurk study on beliefs about COVID-19 risk
      HTML
      •
      MIT License
      •1•0•0•0•Updated Feb 3, 2023Feb 3, 2023

    • OASIS

      Public
      0•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • CANLab_PsychoPy_Toolbox

      Public
      Ease of use PsychoPy Wrappers for efficient creation of CANLab stimulus paradigms in the fMRI scanner
      Python
      •
      MIT License
      •3•2•0•0•Updated Nov 12, 2022Nov 12, 2022

    • stimMAP_public

      Public
      A Public repo for the STIMmap Study in the CANlab
      0•0•0•0•Updated Oct 18, 2022Oct 18, 2022

    • .github

      Public
      Public-facing description of full CANlab organization GitHub
      0•0•0•0•Updated Oct 13, 2022Oct 13, 2022

    • RobustToolbox

      Public
      Robust regression toolbox for neuroimaging data
      HTML
      •
      GNU General Public License v2.0
      •7•14•2•0•Updated Apr 28, 2022Apr 28, 2022

    • petre_scope_of_pain_representation

      Public
      0•1•0•0•Updated Apr 24, 2022Apr 24, 2022

    • IMENSA_public

      Public
      Python
      •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • 2020_Visceral_and_Somatic_Pain

      Public
      Code used in Van Oudenhove, Kragel, et al. 2020
      MATLAB
      •0•1•0•0•Updated Feb 21, 2022Feb 21, 2022

    • WAViMedEEG

      Public
      Jupyter Notebook
      •
      MIT License
      •1•4•0•0•Updated Aug 18, 2021Aug 18, 2021

    • 2021_Koban_NRN_SelfInContext

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 17, 2021Feb 17, 2021

    • ANiC.github.io

      Public
      Affective Neuroimaging Collaboratory
      MATLAB
      •
      Other
      •0•1•0•0•Updated Jan 19, 2021Jan 19, 2021

    • ComBatHarmonization

      Public
      Harmonization of multi-site imaging data with ComBat
      R
      •
      MIT License
      •105•0•0•0•Updated Sep 28, 2020Sep 28, 2020