Drost Laboratory - Digital Biology Research Group

All

22 repositories

myTAI
Public
Evolutionary Transcriptomics with R
evolution transcriptome evo-devo gene-sets r gene-expression conservation evolutionary-transcriptomics studies-transcriptomes biological-processes
R
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GNU General Public License v2.0
•18•41•2•0•Updated Dec 6, 2024Dec 6, 2024
philentropy
Public
Information Theory and Distance Quantification with R
distance-measures r statistics information-theory similarity-measures jensen-shannon-divergence distance-quantification parametric-distributions
R
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GNU General Public License v2.0
•19•133•6•0•Updated Dec 5, 2024Dec 5, 2024
diamond
Public
Accelerated BLAST compatible local sequence aligner.
C++
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GNU General Public License v3.0
•181•0•0•0•Updated Nov 19, 2024Nov 19, 2024
setga
Public
Small library extracting a minimal subset from a given set that optimizes a given (set of) function(s).
Python
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MIT License
•0•0•0•0•Updated Jul 18, 2024Jul 18, 2024
edgynode
Public
Statistical assessment and simulated evolution of gene regulatory networks
R
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GNU General Public License v3.0
•3•4•0•0•Updated May 23, 2024May 23, 2024
deepclust_colabfold
Public
Using the DeepClust Database with ColabFold
Python
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GNU General Public License v2.0
•0•0•0•0•Updated Apr 11, 2024Apr 11, 2024
deepclust_dataretrieval
Public
Cluster Extraction for the DeepClust Database
Python
•
GNU General Public License v2.0
•0•0•0•0•Updated Apr 11, 2024Apr 11, 2024
uberblast
Public
Seamless Integration of BLAST Alignments in R
GNU General Public License v2.0
•1•0•0•0•Updated Oct 28, 2023Oct 28, 2023
rdiamond
Public
Running DIAMOND2 through R
diamond sequence sequence-alignment aligner
R
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GNU General Public License v2.0
•2•6•0•0•Updated Oct 17, 2023Oct 17, 2023
published_phylomaps
Public
A Collection of Published Phylostratigraphic Maps and Divergence Maps
3•9•1•0•Updated Oct 12, 2023Oct 12, 2023
orthologr
Public
Genome wide orthology inference and dNdS estimation
blast comparative r genomics species comparative-genomics proteome blast-searches orthology-inference comparative-genomics-studies
R
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GNU General Public License v2.0
•27•88•8•0•Updated Oct 10, 2023Oct 10, 2023
metablastr
Public
Seamless Integration of BLAST Sequence Searches in R
protein species blast blast-searches nucleotide biological-sequences blasting blastn blast-search sequence-diversity
R
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GNU General Public License v2.0
•8•31•6•1•Updated Sep 10, 2023Sep 10, 2023
retrocombinator
Public
An R/C++ package for simulating the evolution of retrotransposons over time.
evolution transposition speciation transposons recombination retrotransposons transposable-element
HTML
•3•4•1•0•Updated Apr 1, 2022Apr 1, 2022
network-inference-pipeline
Public
Applying network-inference-toolbox to RNAseq data
R
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GNU General Public License v3.0
•0•2•0•0•Updated Nov 3, 2021Nov 3, 2021
network-inference-toolbox
Public
A bunch of network inference utilities packaged as Singularity containers
R
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GNU General Public License v3.0
•0•1•0•0•Updated Apr 22, 2021Apr 22, 2021
homologr
Public
Homology inference across multiple species
R
•0•1•0•0•Updated Sep 27, 2020Sep 27, 2020
seqstats
Public
Biological Sequence Statistics in R
bioinformatics genomics biological-data-analysis biological-sequences biological-sequence-statistics
R
•1•2•0•0•Updated Apr 26, 2020Apr 26, 2020
patternseqr
Public
Sequence feature detection and classification with R
R
•0•1•0•0•Updated Apr 22, 2020Apr 22, 2020
biodbretrievr
Public
Retrieve and efficiently index entire biological sequence databases
data retrieval biological-sequences biological-data databasestoring
0•0•0•0•Updated Apr 21, 2020Apr 21, 2020
shinyDIAMOND
Public
A web interface to DIAMOND2
0•0•0•0•Updated Apr 18, 2020Apr 18, 2020
biomartr
Public
Genomic Data Retrieval with R
R
•29•0•0•0•Updated Apr 12, 2020Apr 12, 2020
hitparsr
Public
Distributed Databasing of Alignment Hit Data
distributed-database distributed-storage distributed-file-system
0•0•0•0•Updated Apr 7, 2020Apr 7, 2020