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    54 repositories

    • PM_NPC_Assembly

      Public
      Code for spatiotemporal modeling of the NPC Assembly Pathway
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • GLP1R-Gs

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Jul 23, 2024Jul 23, 2024

    • NPC_Basket

      Public
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • U2OS_cellmap_structures

      Public
      Python
      •0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • NPC_TMDs

      Public
      Python
      •0•0•0•1•Updated Apr 25, 2024Apr 25, 2024

    • ecm29

      Public
      Regulation of 26S proteasome via interaction with Ecm29
      integrative-modeling
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • pol_ii_g

      Public
      Architecture of Pol II(G) and molecular mechanism of transcription regulation by Gdown1
      integrative-modelingcross-linking
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •2•0•0•0•Updated Jan 24, 2024Jan 24, 2024

    • tfiih

      Public
      Modeling of the TFIIH complex using chemical cross-links and electron microscopy (EM) density maps
      integrative-modelingcross-linkingcomparative-modelselectron-microscopy
      Python
      •0•0•2•0•Updated Dec 17, 2023Dec 17, 2023

    • phoq

      Public
      Multi-state modeling of the PhoQ two-component system
      Python
      •0•1•0•0•Updated Dec 16, 2023Dec 16, 2023

    • pde6

      Public
      Modeling of the phosphodiesterase (PDE6)
      Python
      •0•0•0•0•Updated Dec 15, 2023Dec 15, 2023

    • IMP_BioSystem_Domain_Fly_Genome

      Public
      Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
      Python
      •3•0•0•0•Updated Dec 15, 2023Dec 15, 2023

    • ORF2p

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Dec 14, 2023Dec 14, 2023

    • exocyst

      Public
      Integrative Modeling of Yeast Exocyst Complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•2•0•Updated Nov 28, 2023Nov 28, 2023

    • nbspike

      Public
      Integrative modeling of nanobody binding modes to the SARS-CoV-2 Spike protein
      PureBasic
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • pom152

      Public
      Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • nup133

      Public
      Modeling of the Nup133 subunit of the Nuclear Pore Complex
      Python
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • nup82

      Public
      Modeling of the Nup82 subcomplex of the Nuclear Pore Complex
      small-angle-xray-scatteringx-ray-crystallographyintegrative-modelingcross-linkingcomparative-modelselectron-microscopy
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Nov 26, 2023Nov 26, 2023

    • Complement

      Public
      Human complement modeling
      integrative-modelingcross-linkingcomplement
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Nov 21, 2023Nov 21, 2023

    • Nef_CD4_AP2

      Public
      Integrative structure of the Nef-CD4(CD)-AP2(Δμ2-CTD) complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Nov 21, 2023Nov 21, 2023

    • smc56_nse256

      Public
      Integrative modeling of the Smc5/6-Nse2/5/6 complex using comparative modeling and chemical crosslinks.
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•1•0•0•Updated Nov 14, 2023Nov 14, 2023

    • exosome

      Public
      Modeling exosome complexes from cross-link MS data
      Python
      •1•0•2•0•Updated Nov 12, 2023Nov 12, 2023

    • CSN2019

      Public
      Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •1•0•0•0•Updated Nov 1, 2023Nov 1, 2023

    • nup84

      Public
      Modeling of the Nup84 subcomplex of the Nuclear Pore Complex
      x-ray-crystallographyintegrative-modelingcross-linkingelectron-microscopycomparative-models
      Python
      •1•0•3•0•Updated Oct 28, 2023Oct 28, 2023

    • mediator

      Public
      Modeling of the yeast Mediator complex
      x-ray-crystallographyintegrative-modelingcross-linkingcomparative-modelselectron-microscopy
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•1•0•Updated Oct 25, 2023Oct 25, 2023

    • saxsmerge_benchmark

      Public
      Benchmark of the SAXS Merge method
      Python
      •1•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • npc2018

      Public
      Modeling of the yeast Nuclear Pore Complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • gtuscSpc110

      Public
      Integrative model of the γTuSC-Spc110 complex
      Python
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • Pks13

      Public
      Python
      •0•0•0•0•Updated Oct 4, 2022Oct 4, 2022

    • NPC_3.0

      Public
      Integrative structure determination of the yeast NPC
      Python
      •0•0•1•0•Updated Jul 7, 2022Jul 7, 2022

    • pemap

      Public
      Integrative Structure Determination using data from point mutant epistatic miniarray profile
      Python
      •0•0•0•0•Updated Jun 27, 2022Jun 27, 2022