Repositories list

• DEBIAS-M

  Public
  Python

  •

  Other

  •0•2•0•0•Updated Jan 21, 2025Jan 21, 2025

• compositional-empty-features

  Public
  Analysis of our manuscript entitled "Compositional transformations can reasonably introduce phenotype-associated values in sparse features"

  Jupyter Notebook

  •0•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• preeclampsia_analysis

  Public
  Analysis supporting the manuscript "Early prediction of preeclampsia using the first trimester vaginal microbiome"

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 22, 2024Dec 22, 2024

• CopanTopologyAnalysis

  Public
  Python

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• DEBIAS-M-Analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• SGVFinder2

  Public
  Python

  •

  Other

  •1•6•10•1•Updated Aug 8, 2024Aug 8, 2024

• LPOCV-bias-analysis

  Public
  Analysis support the manuscript "Distributional bias compromises leave-one-out cross-validation"

  Python

  •0•0•0•0•Updated Jun 5, 2024Jun 5, 2024

• RebalancedCV

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Jun 5, 2024Jun 5, 2024

• pymgpipe

  Public
  Python implementation of mgpipe

  modelingsystems-biologymicrobiome+ 6cobrametabolic-modelsflux-balance-analysismetabolic-reconstructionmicrobiome-modeling-toolboxmgpipe

  JetBrains MPS

  •

  Apache License 2.0

  •0•7•0•1•Updated Oct 9, 2023Oct 9, 2023

• 2023_Metamobilome

  Public
  Python

  •0•0•0•0•Updated Sep 29, 2023Sep 29, 2023

• PTB_Metabs_2021

  Public
  Python

  •1•0•0•0•Updated Sep 11, 2023Sep 11, 2023

• MOMs-PI_microdiversity_2023

  Public
  Jupyter Notebook

  •1•2•0•0•Updated Jul 15, 2023Jul 15, 2023

• mantis

  Public
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •20•0•0•0•Updated Apr 13, 2020Apr 13, 2020