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    93 repositories

    • marinebon_wordpress_website

      Public
      1•2•8•0•Updated Dec 3, 2024Dec 3, 2024

    • mbon-dashboard-server

      Public
      server software for MBON early alert dashboard using Docker
      Python
      •2•1•35•0•Updated Dec 2, 2024Dec 2, 2024

    • awesome-erddap-datasets

      Public
      Curated list of datasets available via ERDDAP
      0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • seascapeR

      Public
      helper functions for data summary and visualization of seascapes (Kavanaugh et al)
      HTML
      •
      Other
      •1•2•4•0•Updated Nov 11, 2024Nov 11, 2024

    • extractr

      Public
      Extraction functions using R for common datasets (ERDDAP, DataOne, etc)
      R
      •
      Other
      •0•1•5•0•Updated Oct 31, 2024Oct 31, 2024

    • map-of-activities

      Public
      MBON Map of Activities
      Python
      •
      MIT License
      •2•2•0•1•Updated Oct 4, 2024Oct 4, 2024

    • edna-vis

      Public
      visualization app for environmental DNA (eDNA), using R shiny
      R
      •5•6•0•0•Updated Sep 24, 2024Sep 24, 2024

    • data_reports

      Public
      Quarto reports generated to show status of MBON-mediated datasets.
      R
      •0•0•2•0•Updated Sep 12, 2024Sep 12, 2024

    • aquamaps-downscaled

      Public
      initial attempt to downscale AquaMaps species distribution models to finer spatial resolution a la GEBCO bathymetry (15 arc second)
      HTML
      •
      MIT License
      •0•0•1•0•Updated Jun 17, 2024Jun 17, 2024

    • marinebon_org_old_site

      Public archive
      Raw html for older (201?-2019) website built using godaddy website builder
      HTML
      •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • marinebon.github.io

      Public archive
      old website for the Marine Biodiversity Observation Network, aka MBON
      HTML
      •2•1•5•4•Updated Apr 10, 2024Apr 10, 2024

    • www_marinebon

      Public archive
      Hugo / R blogdown based website for marinebon.org staged at www.marinebon.app
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • www_marinebon3

      Public archive
      Testing latest blogdown with Hugo wowchemy/starter-academic
      SCSS
      •1•0•1•0•Updated Apr 10, 2024Apr 10, 2024

    • www_marinebon2

      Public archive
      MBON Website 2021 Rebuild in progress
      TeX
      •
      MIT License
      •1•1•26•0•Updated Apr 10, 2024Apr 10, 2024

    • sdm-explore

      Public
      Explore species distribution modeling
      HTML
      •
      MIT License
      •0•0•1•0•Updated Mar 23, 2024Mar 23, 2024

    • MarineSDMs

      Public
      Marine Species Distribution Modeling (SDM) Quarto book
      R
      •
      MIT License
      •0•2•1•0•Updated Mar 15, 2024Mar 15, 2024

    • api

      Public
      custom application programming interface (API) to query marine biodiversity
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • aquamapsduckdb

      Public
      Reformatting of aquamapsdata R package with faster duck database and new terra package for rasters
      R
      •
      MIT License
      •1•0•0•0•Updated Feb 1, 2024Feb 1, 2024

    • mbon_data_uploader

      Public
      frontend for uploading mbon data into the mbon-in-a-box stack
      Python
      •
      MIT License
      •0•1•2•0•Updated Jan 19, 2024Jan 19, 2024

    • infographiqJS

      Public
      Infographiq, ie intelligent interactive infographics, core JavaScript library
      javascriptdata-visualizationinfographicsdata-driven-art
      HTML
      •
      MIT License
      •1•9•1•0•Updated Jan 17, 2024Jan 17, 2024

    • p2p

      Public
      Pole to Pole website
      R
      •1•3•5•1•Updated Dec 16, 2023Dec 16, 2023

    • py-dwc-viz

      Public
      Python Package for data analysis and visualisation for Darwin Core data, with plug-and-play from providers like OBIS and GBIF.
      pythondata-visualizationdata-analysisbiodiversity-informaticsmarine-data
      Python
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Nov 9, 2023Nov 9, 2023

    • infographiq

      Public
      Overview documentation (in bookdown) for creating intelligent interactive infographics, ie infographiq
      bookdowninteractive-infographics
      R
      •
      Creative Commons Zero v1.0 Universal
      •0•3•7•0•Updated Oct 12, 2023Oct 12, 2023

    • SLURMquamapR

      Public
      R scripts to generate aquamaps using SLURM supercomputing scheduler
      Shell
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Sep 15, 2023Sep 15, 2023

    • data-management-checklists

      Public
      [DRAFT] data management protocol checklists containing recommendations from the MBON Data Management Working Group
      GNU General Public License v3.0
      •0•0•2•0•Updated Sep 13, 2023Sep 13, 2023

    • dwc-bias-analysis

      Public
      An analysis of sampling spatial, tempora, and taxonomic biases for Darwin-Core (Dwc) data.
      python
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated May 25, 2023May 25, 2023

    • open-biodiversity-assessment-pub

      Public
      WiP Open Biodiversity Assessment Publication
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •1•0•2•0•Updated Apr 7, 2023Apr 7, 2023

    • open-biodiversity-indicators

      Public
      Biodiversity indicators generated using open science methodology and FAIR taxonomic occurrence data.
      HTML
      •1•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • marinebon_app

      Public
      docker for marinebon.app
      Shell
      •0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

    • bio-idx-wg

      Public
      MBON Biodiversity Indicators Workin Group -- various outputs, starting with kickoff survey
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Mar 20, 2023Mar 20, 2023