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@mpinb Max Planck Institute for Neurobiology of Behavior - caesar

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    37 repositories

    • braid-opto-arena

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • msemalign

      Public
      serial section multibeam scanning electron microscopy volume alignment
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Dec 3, 2024Dec 3, 2024

    • submitit

      Public
      Python 3.8+ toolbox for submitting jobs to Slurm
      Python
      •
      MIT License
      •131•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • Augmentor

      Public
      Data augmentation for training 3D convolutional nets
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •7•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • swipe-labeler

      Public
      Swipe Labeler is a Graphical User Interface based tool that allows rapid labeling of image data.
      Jupyter Notebook
      •6•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • waterz

      Public
      Simple watershed and agglomeration library for affinity graphs.
      C++
      •21•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • sparseANNs

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • segment-anything-2

      Public
      The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
      Jupyter Notebook
      •
      Apache License 2.0
      •1.4k•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • .github

      Public
      0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • yolov8_ros

      Public
      Ultralytics YOLOv8 for ROS 2
      Python
      •
      GNU General Public License v3.0
      •110•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • swarm-scripts

      Public
      scripts for a basic method of scaling on a SLURM HPC cluster
      Python
      •0•1•0•0•Updated Mar 21, 2024Mar 21, 2024

    • BastFruengelEtAl

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Mar 1, 2024Mar 1, 2024

    • gauss-em

      Public
      Example that demonstrates computationally solving the order of unordered serial slices
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • connected-components-3d

      Public
      Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.
      C++
      •
      GNU General Public License v3.0
      •45•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • n2v

      Public
      This is the implementation of Noise2Void training.
      Python
      •
      Other
      •115•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • isf-pandas-msgpack

      Public
      In-Silico-Framework Pandas Msgpack
      Python
      •
      Other
      •21•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • rosbag2video

      Public
      converts image sequence in ros bag files to video files
      Python
      •
      GNU General Public License v2.0
      •111•0•0•0•Updated Sep 13, 2023Sep 13, 2023

    • elektronn3

      Public
      A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
      Python
      •
      MIT License
      •27•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • knossos_utils

      Public
      Python library for interacting with KNOSSOS data sets and annotation files
      Python
      •
      GNU General Public License v2.0
      •9•0•0•0•Updated Aug 29, 2023Aug 29, 2023

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.1k•0•0•0•Updated Aug 24, 2023Aug 24, 2023

    • rcc-xcorr

      Public
      A Python library to compute normalized 2D cross-correlation of images using GPU and multiprocessing.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 18, 2023Aug 18, 2023

    • pylon-ros-camera

      Public
      The official pylon ROS driver for Basler GigE Vision and USB3 Vision cameras:
      C++
      •
      Other
      •153•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • rviz_visual_tools_python

      Public
      [Unofficial Python bindings] C++ API wrapper for displaying shapes and meshes in Rviz
      C++
      •243•0•0•0•Updated Jun 2, 2023Jun 2, 2023

    • nways_multi_gpu

      Public
      N-Ways to Multi-GPU Programming
      C
      •3•0•0•0•Updated Apr 4, 2023Apr 4, 2023

    • deepinterpolation

      Public
      Python
      •
      Other
      •50•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • Multiview

      Public
      A program which calculates different optical measures in Opengl.
      C++
      •
      Other
      •2•0•0•0•Updated Aug 30, 2022Aug 30, 2022

    • pytorch-emvision

      Public
      PyTorch models.
      Python
      •
      MIT License
      •3•0•0•0•Updated Aug 5, 2022Aug 5, 2022

    • isf-installer

      Public
      Linux bash scripts used to automate the installation of 'In-Silico Framework' using Python 2 and Python 3.
      Shell
      •0•0•0•0•Updated May 23, 2022May 23, 2022

    • gunpowder

      Public
      A library to facilitate machine learning on multi-dimensional images.
      Python
      •
      MIT License
      •56•0•0•1•Updated May 5, 2022May 5, 2022

    • webknossos

      Public archive
      webknossos python library from the scalable minds mono-repo
      Python
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated May 5, 2022May 5, 2022