Seven Bridges

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34 repositories

sbShinyModules
Public
sbShinyModules is an R package designed to simplify the development of Shiny applications specifically for hosting as on-demand Shiny applications on Seven Bridges Platforms.
R
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Apache License 2.0
•0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
sevenbridges-python
Public
SevenBridges Python Api bindings
bioinformatics api-client sevenbridges common-workflow-language rest-client
Python
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Apache License 2.0
•28•46•7•1•Updated Oct 18, 2024Oct 18, 2024
sevenbridges2
Public
Seven Bridges API R Client
cloud bioinformatics api-client sevenbridges
R
•0•1•1•0•Updated Jul 2, 2024Jul 2, 2024
tidycwl
Public
Tidy Common Workflow Language Tools and Workflows
tidyverse bioinformatics-pipeline sevenbridges common-workflow-language
Common Workflow Language
•2•9•0•0•Updated Jun 6, 2024Jun 6, 2024
biocompute
Public
Create and Manipulate BioCompute Objects
workflow bioinformatics sevenbridges standardization biocompute-objects science-communication biocompute
R
•3•3•1•0•Updated Jun 6, 2024Jun 6, 2024
sevenbridges-cwl-draft2-upgrader
Public
Command line tool to upgrade sbg:draft2 to CWL v1.0.
Python
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Apache License 2.0
•0•6•0•1•Updated Jan 9, 2024Jan 9, 2024
bco-app
Public
BCO App by Seven Bridges
sevenbridges common-workflow-language shiny-apps biocompute-objects biocompute
R
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GNU Affero General Public License v3.0
•4•6•7•0•Updated Jul 27, 2023Jul 27, 2023
sevenbridges-cwl
Public
Seven Bridges Python library for programatic generation of CWL workflows.
python bioinformatics sevenbridges common-workflow-language cwl
Python
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Other
•3•19•0•1•Updated Oct 26, 2022Oct 26, 2022
sevenbridges-r
Public
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
cloud bioinformatics api-client bioconductor sevenbridges common-workflow-language
R
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Apache License 2.0
•14•35•12•1•Updated Jan 28, 2022Jan 28, 2022
okAPI
Public
Recipes and Tutorials for Automation & Extension on the CGC and SBPLAT platforms
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•1•3•1•0•Updated Sep 2, 2021Sep 2, 2021
adk-examples
Public
Seven Bridges RHEO Automation Development Kit (ADK) examples
automation sevenbridges
3•5•0•0•Updated Apr 21, 2021Apr 21, 2021
docs
Public
Supplementary resources for documentation for Seven Bridges producs
Jupyter Notebook
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Creative Commons Attribution 4.0 International
•1•1•0•0•Updated Mar 25, 2021Mar 25, 2021
GENAVi
Public
Example R Shiny app demonstrating Seven Bridges Platform integration via OAuth2.
oauth2 rna-seq r shiny-apps differential-gene-expression
HTML
•16•2•0•0•Updated Feb 24, 2021Feb 24, 2021
smart-variant-filtering
Public
Python
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BSD 3-Clause "New" or "Revised" License
•5•30•0•0•Updated Feb 17, 2021Feb 17, 2021
sbg_dockstore_tools
Public
cwl
Common Workflow Language
•6•2•0•1•Updated Dec 30, 2020Dec 30, 2020
dante
Public
Dante is a Python dependency validation tool
python dependencies requirements-management lockfiles
Python
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Apache License 2.0
•4•5•3•0•Updated Oct 2, 2019Oct 2, 2019
data-repository-service-schemas
Public
A repository for the schemas used for the Data Repository Service.
Python
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Apache License 2.0
•53•0•0•0•Updated Mar 11, 2019Mar 11, 2019
Mitty
Public
Seven Bridges Genomics aligner/caller debugging and analysis tools
bioinformatics simulator genomics
Python
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Apache License 2.0
•2•13•5•2•Updated Nov 20, 2018Nov 20, 2018
seventweets
Public
SevenTweets is project done as part of SevenBridges PythonWorkshop. This is one example of implementation.
Python
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Apache License 2.0
•2•2•0•0•Updated Oct 29, 2018Oct 29, 2018
cgc-api-documentation
Public
0•0•0•0•Updated May 15, 2018May 15, 2018
VBT-TrioAnalysis
Public
C++
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GNU General Public License v3.0
•2•13•4•0•Updated May 2, 2018May 2, 2018
geck
Public
Python
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GNU General Public License v3.0
•2•8•0•0•Updated Apr 5, 2018Apr 5, 2018
fuse
Public
A Go package for implementing a FUSE file system.
Go
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Apache License 2.0
•107•0•0•0•Updated Nov 30, 2017Nov 30, 2017
sevenbridges-java
Public
Seven Bridges Platform Java Library
java sevenbridges apiclient
Java
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Apache License 2.0
•2•2•0•0•Updated Aug 20, 2017Aug 20, 2017
sparqb
Public
Python
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Apache License 2.0
•1•1•0•0•Updated Jun 20, 2017Jun 20, 2017
public-ontologies
Public
Apache License 2.0
•1•2•0•0•Updated Jun 19, 2017Jun 19, 2017
dna2protein
Public
An example how to port a workflow with two commandtool to the CWL
Python
•4•4•0•0•Updated Apr 28, 2017Apr 28, 2017
icr-workshop
Public
ICR Workshop
Shell
•3•3•0•0•Updated Jan 25, 2017Jan 25, 2017
sevenbridges-node
Public
TypeScript
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Apache License 2.0
•0•0•0•0•Updated Oct 10, 2016Oct 10, 2016
dreamwebinars
Public
A repository for resources from the DREAM Challenge Webinars
Jupyter Notebook
•1•6•0•0•Updated Sep 27, 2016Sep 27, 2016