{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"samplesheet-check-backend","owner":"umccr","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,4,0,0,0,0,3,3,3,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-21T03:33:06.015Z"}},{"type":"Public","name":"orcabus","owner":"umccr","isFork":false,"description":" 🐋 UMCCR Pipeline & Workflow Orchestration","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":31,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-20T23:38:14.677Z"}},{"type":"Public","name":"data-portal-apis","owner":"umccr","isFork":false,"description":"UMCCR Data Portal API Backend in cloud native serverless","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":19,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-14T08:00:56.435Z"}},{"type":"Public","name":"infrastructure","owner":"umccr","isFork":false,"description":"Infrastructure as Code at UMCCR","allTopics":["aws","terraform","infrastructure"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":12,"starsCount":10,"forksCount":8,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-08T10:23:46.252Z"}},{"type":"Public","name":"wrapica","owner":"umccr","isFork":false,"description":"A suite of secondary / tertiary functions for running ICA API calls","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":8,"starsCount":2,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-06T12:30:28.931Z"}},{"type":"Public","name":"icav2-cli-plugins","owner":"umccr","isFork":false,"description":"A set of additional subcommands for icav2","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":19,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-05T09:12:00.145Z"}},{"type":"Public","name":"cwl-ica-cli","owner":"umccr","isFork":false,"description":"The CLI used for creating/syncing CWL workflows from GitHub to ICAv1 ","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":9,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-03T05:32:55.058Z"}},{"type":"Public","name":"agha-data-validation-pipeline","owner":"umccr","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-16T04:14:15.204Z"}},{"type":"Public","name":"libumccr","owner":"umccr","isFork":false,"description":"🐍 UMCCR Reusable Python modules","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T01:33:39.665Z"}},{"type":"Public","name":"v2-samplesheet-maker","owner":"umccr","isFork":false,"description":"Generate V2 SampleSheets from JSON Inputs","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T07:01:04.799Z"}},{"type":"Public","name":"cttso-ica-to-pieriandx","owner":"umccr","isFork":false,"description":"Transfers data from GDS / creates PierianDx case / run and informatics job for each sample.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T17:53:07.256Z"}},{"type":"Public","name":"fake-passport-client-example","owner":"umccr","isFork":false,"description":"A locally runnable example of a GA4GH passport/visa client","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T16:01:20.712Z"}},{"type":"Public","name":"umccrise","owner":"umccr","isFork":false,"description":"🐍 DRAGEN Tumor/Normal workflow post-processing","allTopics":["pipeline","reporting","cancer-genomics","variant-calls","bcbio","bcbio-nextgen","cancer-report","umccrise","pcgr"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":21,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-18T09:25:30.634Z"}},{"type":"Public","name":"oviraptor","owner":"umccr","isFork":true,"description":"Oncoviral integration in cancer whole genome data 🦕","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-04T07:21:46.786Z"}},{"type":"Public","name":"gridss-purple-linx-nf","owner":"umccr","isFork":false,"description":"Nextflow pipeline and AWS stack for the GRIDSS/PURPLE/LINX toolkit","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-28T03:57:43.531Z"}},{"type":"Public","name":"MultiQC","owner":"umccr","isFork":true,"description":"Aggregate results from bioinformatics analyses across many samples into a single report.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":593,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-14T08:27:26.313Z"}},{"type":"Public","name":"agha-data-validation-scripts","owner":"umccr","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-15T03:38:11.581Z"}},{"type":"Public","name":"reference_data","owner":"umccr","isFork":false,"description":"Reference data version tracking for UMCCR","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-06T07:29:33.078Z"}},{"type":"Public","name":"pyriandx","owner":"umccr","isFork":false,"description":"CLI client and Python SDK/Library for PierianDx CGW web services","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-31T01:34:55.155Z"}},{"type":"Public","name":"umccr-dictionary","owner":"umccr","isFork":false,"description":"UMCCR Data Dictionary","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-31T07:43:28.971Z"}},{"type":"Public","name":"MultiQC_bcbio","owner":"umccr","isFork":true,"description":"MultiQC plugin for bcbio_nextgen pipeline","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-18T03:04:24.950Z"}},{"type":"Public","name":"g3po","owner":"umccr","isFork":false,"description":"🤖 Assorted utility CLI to work with Gen3","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-27T07:06:20.896Z"}},{"type":"Public archive","name":"woof-nf","owner":"umccr","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-19T03:14:02.746Z"}},{"type":"Public","name":"neoantigens","owner":"umccr","isFork":false,"description":"🏺 Exploring novel tumor epitope identification","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":34,"forksCount":10,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-10-07T08:30:25.668Z"}},{"type":"Public","name":"hpc_utils","owner":"umccr","isFork":false,"description":"🖥️ Cluster utils and paths to the reference data in UMCCR servers","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-05-18T10:10:27.337Z"}},{"type":"Public archive","name":"crypt4gh-python","owner":"umccr","isFork":true,"description":"GA4GH cryptographic tools","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":12,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-01T00:16:13.329Z"}},{"type":"Public archive","name":"longranger","owner":"umccr","isFork":true,"description":"10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling","allTopics":["genomics","deprecated-repo"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":4,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-17T21:53:29.371Z"}}],"repositoryCount":27,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"umccr repositories"}