added documentation. this refs #133

ornlneutronimaging · Jan 28, 2022 · ab75960 · ab75960
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diff --git a/docs/usageScenarios/automatic_reconstruction_scenario.rst b/docs/usageScenarios/automatic_reconstruction_scenario.rst
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+For this scenario, as soon as a full set of 3D acquisition is done (when all the rotation angle have been acquired)
+iMars3D should be automatically triggered and reconstruct the data and export them into the IPTS-XXXX/shared/processed_data folder.
+
+This scenario used to work and stopped working 2 years ago. Script used can be find in `/HFIR/CG1D/shared/autoreduce`
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diff --git a/docs/usageScenarios/command_line_scenario.rst b/docs/usageScenarios/command_line_scenario.rst
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+Data used: IPTS-25777
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+* Raw projections:   /HFIR/CG1D/IPTS-25777/raw/ct_scans/iron_man/*
+* ob: /HFIR/CG1D/IPTS-25777/raw/ob/Oct29_2019/*
+* df: /HFIR/CG1D/IPTS-25777/raw/df/Oct29_2019/*
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+iMars3D should be available to the user as a conda or pip application and be executed using a simple command line
+that may look like
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+```
+iMars3d --raw-projections /HFIR/CG1D/IPTS-25777/raw/ct_scans/iron_man/* --ob /HFIR/CG1D/IPTS-25777/raw/ob/Oct29_2019/*
+--df /HFIR/CG1D/IPTS-25777/raw/df/Oct29_2019/* --tilt-correction 0.01 --crop-x0 10 --crop-y0 20 --crop-x1 500 --crop-y1 390
+```
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