From 79aac56066ccb65bda97f10bcc649afc43698529 Mon Sep 17 00:00:00 2001 From: oschwengers Date: Mon, 5 Oct 2020 16:14:42 +0200 Subject: [PATCH] update RDS thresholds to new database --- platon/constants.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/platon/constants.py b/platon/constants.py index f9ead14..8f44ace 100644 --- a/platon/constants.py +++ b/platon/constants.py @@ -4,9 +4,9 @@ MIN_CONTIG_LENGTH = 1000 MAX_CONTIG_LENGTH = 500000 MIN_PROTEIN_IDENTITY = 90.0 -RDS_SENSITIVITY_THRESHOLD = -7.7 # sensitivity => 95 % -RDS_CONSERVATIVE_THRESHOLD = 0.1 # (-0.9) specificity >= 95 % -RDS_SPECIFICITY_THRESHOLD = 0.4 # (-0.5) specificity >= 99.9 % +RDS_SENSITIVITY_THRESHOLD = -7.9 # sensitivity => 95 % +RDS_CONSERVATIVE_THRESHOLD = 0.1 # highest accuracy +RDS_SPECIFICITY_THRESHOLD = 0.7 # specificity >= 99.9 % MIN_CIRC_BASEPAIR_OVERLAP = 100 SPADES_CONTIG_PATTERN = re.compile(r'NODE_\d+_length_\d+_cov_(\d+\.\d+)')